2026-04-05T06:19:41,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-d5j7iagt 2026-04-05T06:19:41,437 Created temporary directory: /tmp/pip-build-tracker-rcrfyb4h 2026-04-05T06:19:41,437 Initialized build tracking at /tmp/pip-build-tracker-rcrfyb4h 2026-04-05T06:19:41,438 Created build tracker: /tmp/pip-build-tracker-rcrfyb4h 2026-04-05T06:19:41,438 Entered build tracker: /tmp/pip-build-tracker-rcrfyb4h 2026-04-05T06:19:41,439 Created temporary directory: /tmp/pip-wheel-f427fcrp 2026-04-05T06:19:41,442 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T06:19:41,445 Created temporary directory: /tmp/pip-ephem-wheel-cache-q_8w2vvp 2026-04-05T06:19:41,467 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T06:19:41,470 2 location(s) to search for versions of peplink: 2026-04-05T06:19:41,470 * https://pypi.org/simple/peplink/ 2026-04-05T06:19:41,470 * https://www.piwheels.org/simple/peplink/ 2026-04-05T06:19:41,471 Fetching project page and analyzing links: https://pypi.org/simple/peplink/ 2026-04-05T06:19:41,472 Getting page https://pypi.org/simple/peplink/ 2026-04-05T06:19:41,474 Found index url https://pypi.org/simple 2026-04-05T06:19:41,701 Fetched page https://pypi.org/simple/peplink/ as application/vnd.pypi.simple.v1+json 2026-04-05T06:19:41,703 Skipping link: No binaries permitted for peplink: https://files.pythonhosted.org/packages/ab/7e/7f29ac824622cf98b04b25fa0d26c1f8e093113de761a2aeaf686c0b41a8/peplink-0.1.0-py3-none-any.whl (from https://pypi.org/simple/peplink/) (requires-python:>=3.9) 2026-04-05T06:19:41,704 Found link https://files.pythonhosted.org/packages/a8/ad/b9434bed0f128dd18c03a1b86475ed2340ab906152907099f0d861843b6e/peplink-0.1.0.tar.gz (from https://pypi.org/simple/peplink/) (requires-python:>=3.9), version: 0.1.0 2026-04-05T06:19:41,705 Fetching project page and analyzing links: https://www.piwheels.org/simple/peplink/ 2026-04-05T06:19:41,705 Getting page https://www.piwheels.org/simple/peplink/ 2026-04-05T06:19:41,707 Found index url https://www.piwheels.org/simple 2026-04-05T06:19:41,877 Fetched page https://www.piwheels.org/simple/peplink/ as text/html 2026-04-05T06:19:41,879 Skipping link: not a file: https://www.piwheels.org/simple/peplink/ 2026-04-05T06:19:41,879 Skipping link: not a file: https://pypi.org/simple/peplink/ 2026-04-05T06:19:41,898 Given no hashes to check 1 links for project 'peplink': discarding no candidates 2026-04-05T06:19:41,916 Collecting peplink==0.1.0 2026-04-05T06:19:41,919 Created temporary directory: /tmp/pip-unpack-luft56ct 2026-04-05T06:19:42,144 Downloading peplink-0.1.0.tar.gz (47 kB) 2026-04-05T06:19:42,249 Added peplink==0.1.0 from https://files.pythonhosted.org/packages/a8/ad/b9434bed0f128dd18c03a1b86475ed2340ab906152907099f0d861843b6e/peplink-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-rcrfyb4h' 2026-04-05T06:19:42,253 Created temporary directory: /tmp/pip-build-env-s72p54co 2026-04-05T06:19:42,258 Installing build dependencies: started 2026-04-05T06:19:42,260 Running command pip subprocess to install build dependencies 2026-04-05T06:19:43,397 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T06:19:43,839 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T06:19:43,862 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T06:19:45,626 Collecting setuptools>=68 2026-04-05T06:19:45,699 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T06:19:45,965 Collecting wheel 2026-04-05T06:19:45,987 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-05T06:19:46,171 Collecting packaging>=24.0 2026-04-05T06:19:46,188 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T06:19:49,157 Installing collected packages: setuptools, packaging, wheel 2026-04-05T06:19:52,710 Creating /tmp/pip-build-env-s72p54co/overlay/local/bin 2026-04-05T06:19:52,712 changing mode of /tmp/pip-build-env-s72p54co/overlay/local/bin/wheel to 755 2026-04-05T06:19:52,734 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-05T06:19:53,014 Installing build dependencies: finished with status 'done' 2026-04-05T06:19:53,020 Getting requirements to build wheel: started 2026-04-05T06:19:53,021 Running command Getting requirements to build wheel 2026-04-05T06:19:53,710 running egg_info 2026-04-05T06:19:53,716 writing PepLink.egg-info/PKG-INFO 2026-04-05T06:19:53,720 writing dependency_links to PepLink.egg-info/dependency_links.txt 2026-04-05T06:19:53,722 writing requirements to PepLink.egg-info/requires.txt 2026-04-05T06:19:53,724 writing top-level names to PepLink.egg-info/top_level.txt 2026-04-05T06:19:53,746 reading manifest file 'PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:53,752 writing manifest file 'PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:53,849 Getting requirements to build wheel: finished with status 'done' 2026-04-05T06:19:53,853 Created temporary directory: /tmp/pip-modern-metadata-gn2luquy 2026-04-05T06:19:53,855 Preparing metadata (pyproject.toml): started 2026-04-05T06:19:53,856 Running command Preparing metadata (pyproject.toml) 2026-04-05T06:19:54,502 running dist_info 2026-04-05T06:19:54,512 creating /tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info 2026-04-05T06:19:54,514 writing /tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/PKG-INFO 2026-04-05T06:19:54,518 writing dependency_links to /tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/dependency_links.txt 2026-04-05T06:19:54,520 writing requirements to /tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/requires.txt 2026-04-05T06:19:54,521 writing top-level names to /tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/top_level.txt 2026-04-05T06:19:54,523 writing manifest file '/tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:54,541 reading manifest file '/tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:54,546 writing manifest file '/tmp/pip-modern-metadata-gn2luquy/PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:54,547 creating '/tmp/pip-modern-metadata-gn2luquy/peplink-0.1.0.dist-info' 2026-04-05T06:19:54,669 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T06:19:54,675 Source in /tmp/pip-wheel-f427fcrp/peplink_f77700d55c80452d85e39ea065c3d6ad has version 0.1.0, which satisfies requirement peplink==0.1.0 from https://files.pythonhosted.org/packages/a8/ad/b9434bed0f128dd18c03a1b86475ed2340ab906152907099f0d861843b6e/peplink-0.1.0.tar.gz 2026-04-05T06:19:54,676 Removed peplink==0.1.0 from https://files.pythonhosted.org/packages/a8/ad/b9434bed0f128dd18c03a1b86475ed2340ab906152907099f0d861843b6e/peplink-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-rcrfyb4h' 2026-04-05T06:19:54,683 Created temporary directory: /tmp/pip-unpack-7_oe7bg6 2026-04-05T06:19:54,684 Building wheels for collected packages: peplink 2026-04-05T06:19:54,688 Created temporary directory: /tmp/pip-wheel-4otkwlfg 2026-04-05T06:19:54,689 Destination directory: /tmp/pip-wheel-4otkwlfg 2026-04-05T06:19:54,691 Building wheel for peplink (pyproject.toml): started 2026-04-05T06:19:54,692 Running command Building wheel for peplink (pyproject.toml) 2026-04-05T06:19:55,315 running bdist_wheel 2026-04-05T06:19:55,333 running build 2026-04-05T06:19:55,334 running build_py 2026-04-05T06:19:55,340 creating build/lib/PepLink 2026-04-05T06:19:55,342 copying PepLink/exceptions.py -> build/lib/PepLink 2026-04-05T06:19:55,344 copying PepLink/adapters.py -> build/lib/PepLink 2026-04-05T06:19:55,346 copying PepLink/models.py -> build/lib/PepLink 2026-04-05T06:19:55,348 copying PepLink/__init__.py -> build/lib/PepLink 2026-04-05T06:19:55,349 copying PepLink/aa_seqs_to_smiles.py -> build/lib/PepLink 2026-04-05T06:19:55,352 copying PepLink/data.py -> build/lib/PepLink 2026-04-05T06:19:55,354 copying PepLink/_smiles_to_aa_seqs_core.py -> build/lib/PepLink 2026-04-05T06:19:55,356 copying PepLink/_aa_seqs_to_smiles_core.py -> build/lib/PepLink 2026-04-05T06:19:55,361 copying PepLink/_chem.py -> build/lib/PepLink 2026-04-05T06:19:55,362 copying PepLink/smiles_to_aa_seqs.py -> build/lib/PepLink 2026-04-05T06:19:55,364 running egg_info 2026-04-05T06:19:55,374 writing PepLink.egg-info/PKG-INFO 2026-04-05T06:19:55,377 writing dependency_links to PepLink.egg-info/dependency_links.txt 2026-04-05T06:19:55,379 writing requirements to PepLink.egg-info/requires.txt 2026-04-05T06:19:55,379 writing top-level names to PepLink.egg-info/top_level.txt 2026-04-05T06:19:55,389 reading manifest file 'PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:55,395 writing manifest file 'PepLink.egg-info/SOURCES.txt' 2026-04-05T06:19:55,397 /tmp/pip-build-env-s72p54co/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'PepLink.data' is absent from the `packages` configuration. 2026-04-05T06:19:55,398 !! 2026-04-05T06:19:55,399 ******************************************************************************** 2026-04-05T06:19:55,399 ############################ 2026-04-05T06:19:55,400 # Package would be ignored # 2026-04-05T06:19:55,400 ############################ 2026-04-05T06:19:55,401 Python recognizes 'PepLink.data' as an importable package[^1], 2026-04-05T06:19:55,401 but it is absent from setuptools' `packages` configuration. 2026-04-05T06:19:55,402 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-05T06:19:55,403 package, please make sure that 'PepLink.data' is explicitly added 2026-04-05T06:19:55,404 to the `packages` configuration field. 2026-04-05T06:19:55,404 Alternatively, you can also rely on setuptools' discovery methods 2026-04-05T06:19:55,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-05T06:19:55,406 instead of `find_packages(...)`/`find:`). 2026-04-05T06:19:55,407 You can read more about "package discovery" on setuptools documentation page: 2026-04-05T06:19:55,408 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-05T06:19:55,409 If you don't want 'PepLink.data' to be distributed and are 2026-04-05T06:19:55,410 already explicitly excluding 'PepLink.data' via 2026-04-05T06:19:55,410 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-05T06:19:55,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-05T06:19:55,411 combination with a more fine grained `package-data` configuration. 2026-04-05T06:19:55,412 You can read more about "package data files" on setuptools documentation page: 2026-04-05T06:19:55,413 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-05T06:19:55,415 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-05T06:19:55,416 even if it does not contain any `.py` files. 2026-04-05T06:19:55,417 On the other hand, currently there is no concept of package data 2026-04-05T06:19:55,418 directory, all directories are treated like packages. 2026-04-05T06:19:55,418 ******************************************************************************** 2026-04-05T06:19:55,420 !! 2026-04-05T06:19:55,420 check.warn(importable) 2026-04-05T06:19:55,421 /tmp/pip-build-env-s72p54co/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'PepLink.data.terminal_modifications' is absent from the `packages` configuration. 2026-04-05T06:19:55,421 !! 2026-04-05T06:19:55,422 ******************************************************************************** 2026-04-05T06:19:55,422 ############################ 2026-04-05T06:19:55,423 # Package would be ignored # 2026-04-05T06:19:55,423 ############################ 2026-04-05T06:19:55,424 Python recognizes 'PepLink.data.terminal_modifications' as an importable package[^1], 2026-04-05T06:19:55,424 but it is absent from setuptools' `packages` configuration. 2026-04-05T06:19:55,425 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-05T06:19:55,426 package, please make sure that 'PepLink.data.terminal_modifications' is explicitly added 2026-04-05T06:19:55,426 to the `packages` configuration field. 2026-04-05T06:19:55,427 Alternatively, you can also rely on setuptools' discovery methods 2026-04-05T06:19:55,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-05T06:19:55,428 instead of `find_packages(...)`/`find:`). 2026-04-05T06:19:55,429 You can read more about "package discovery" on setuptools documentation page: 2026-04-05T06:19:55,430 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-05T06:19:55,432 If you don't want 'PepLink.data.terminal_modifications' to be distributed and are 2026-04-05T06:19:55,432 already explicitly excluding 'PepLink.data.terminal_modifications' via 2026-04-05T06:19:55,433 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-05T06:19:55,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-05T06:19:55,434 combination with a more fine grained `package-data` configuration. 2026-04-05T06:19:55,435 You can read more about "package data files" on setuptools documentation page: 2026-04-05T06:19:55,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-05T06:19:55,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-05T06:19:55,439 even if it does not contain any `.py` files. 2026-04-05T06:19:55,440 On the other hand, currently there is no concept of package data 2026-04-05T06:19:55,440 directory, all directories are treated like packages. 2026-04-05T06:19:55,441 ******************************************************************************** 2026-04-05T06:19:55,442 !! 2026-04-05T06:19:55,443 check.warn(importable) 2026-04-05T06:19:55,443 creating build/lib/PepLink/data 2026-04-05T06:19:55,444 copying PepLink/data/all_aa_smiles_new_handcrafted.csv -> build/lib/PepLink/data 2026-04-05T06:19:55,444 creating build/lib/PepLink/data/terminal_modifications 2026-04-05T06:19:55,445 copying PepLink/data/terminal_modifications/c_terminal_smiles_from_PubChem_handcrafted.csv -> build/lib/PepLink/data/terminal_modifications 2026-04-05T06:19:55,445 copying PepLink/data/terminal_modifications/n_terminal_smiles_from_PubChem_handcrafted.csv -> build/lib/PepLink/data/terminal_modifications 2026-04-05T06:19:55,446 installing to build/bdist.linux-armv7l/wheel 2026-04-05T06:19:55,446 running install 2026-04-05T06:19:55,453 running install_lib 2026-04-05T06:19:55,459 creating build/bdist.linux-armv7l/wheel 2026-04-05T06:19:55,461 creating build/bdist.linux-armv7l/wheel/PepLink 2026-04-05T06:19:55,463 copying build/lib/PepLink/exceptions.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,465 copying build/lib/PepLink/adapters.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,468 copying build/lib/PepLink/models.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,470 copying build/lib/PepLink/__init__.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,472 copying build/lib/PepLink/aa_seqs_to_smiles.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,474 copying build/lib/PepLink/data.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,477 copying build/lib/PepLink/_smiles_to_aa_seqs_core.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,480 copying build/lib/PepLink/_aa_seqs_to_smiles_core.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,485 copying build/lib/PepLink/_chem.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,487 copying build/lib/PepLink/smiles_to_aa_seqs.py -> build/bdist.linux-armv7l/wheel/./PepLink 2026-04-05T06:19:55,490 creating build/bdist.linux-armv7l/wheel/PepLink/data 2026-04-05T06:19:55,492 creating build/bdist.linux-armv7l/wheel/PepLink/data/terminal_modifications 2026-04-05T06:19:55,494 copying build/lib/PepLink/data/terminal_modifications/c_terminal_smiles_from_PubChem_handcrafted.csv -> build/bdist.linux-armv7l/wheel/./PepLink/data/terminal_modifications 2026-04-05T06:19:55,496 copying build/lib/PepLink/data/terminal_modifications/n_terminal_smiles_from_PubChem_handcrafted.csv -> build/bdist.linux-armv7l/wheel/./PepLink/data/terminal_modifications 2026-04-05T06:19:55,498 copying build/lib/PepLink/data/all_aa_smiles_new_handcrafted.csv -> build/bdist.linux-armv7l/wheel/./PepLink/data 2026-04-05T06:19:55,501 running install_egg_info 2026-04-05T06:19:55,506 Copying PepLink.egg-info to build/bdist.linux-armv7l/wheel/./PepLink-0.1.0-py3.11.egg-info 2026-04-05T06:19:55,518 running install_scripts 2026-04-05T06:19:55,526 creating build/bdist.linux-armv7l/wheel/peplink-0.1.0.dist-info/WHEEL 2026-04-05T06:19:55,529 creating '/tmp/pip-wheel-4otkwlfg/.tmp-0zwv59tt/peplink-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T06:19:55,532 adding 'PepLink/__init__.py' 2026-04-05T06:19:55,542 adding 'PepLink/_aa_seqs_to_smiles_core.py' 2026-04-05T06:19:55,545 adding 'PepLink/_chem.py' 2026-04-05T06:19:55,547 adding 'PepLink/_smiles_to_aa_seqs_core.py' 2026-04-05T06:19:55,549 adding 'PepLink/aa_seqs_to_smiles.py' 2026-04-05T06:19:55,551 adding 'PepLink/adapters.py' 2026-04-05T06:19:55,553 adding 'PepLink/data.py' 2026-04-05T06:19:55,555 adding 'PepLink/exceptions.py' 2026-04-05T06:19:55,556 adding 'PepLink/models.py' 2026-04-05T06:19:55,559 adding 'PepLink/smiles_to_aa_seqs.py' 2026-04-05T06:19:55,562 adding 'PepLink/data/all_aa_smiles_new_handcrafted.csv' 2026-04-05T06:19:55,565 adding 'PepLink/data/terminal_modifications/c_terminal_smiles_from_PubChem_handcrafted.csv' 2026-04-05T06:19:55,567 adding 'PepLink/data/terminal_modifications/n_terminal_smiles_from_PubChem_handcrafted.csv' 2026-04-05T06:19:55,571 adding 'peplink-0.1.0.dist-info/METADATA' 2026-04-05T06:19:55,572 adding 'peplink-0.1.0.dist-info/WHEEL' 2026-04-05T06:19:55,574 adding 'peplink-0.1.0.dist-info/top_level.txt' 2026-04-05T06:19:55,575 adding 'peplink-0.1.0.dist-info/RECORD' 2026-04-05T06:19:55,577 removing build/bdist.linux-armv7l/wheel 2026-04-05T06:19:55,682 Building wheel for peplink (pyproject.toml): finished with status 'done' 2026-04-05T06:19:55,688 Created wheel for peplink: filename=peplink-0.1.0-py3-none-any.whl size=44852 sha256=6175ba140feba972bf74b40949c5460d6fbdb24d6d82250f43624f4f69d6550b 2026-04-05T06:19:55,689 Stored in directory: /tmp/pip-ephem-wheel-cache-q_8w2vvp/wheels/0c/b0/28/e6f87d5d05a31dab7eb12026845bab6d3ef9899b4fe965a39a 2026-04-05T06:19:55,701 Successfully built peplink 2026-04-05T06:19:55,706 Removed build tracker: '/tmp/pip-build-tracker-rcrfyb4h'