2026-04-05T07:22:38,461 Created temporary directory: /tmp/pip-ephem-wheel-cache-_vi44a6a 2026-04-05T07:22:38,463 Created temporary directory: /tmp/pip-build-tracker-m9z6sqv1 2026-04-05T07:22:38,464 Initialized build tracking at /tmp/pip-build-tracker-m9z6sqv1 2026-04-05T07:22:38,464 Created build tracker: /tmp/pip-build-tracker-m9z6sqv1 2026-04-05T07:22:38,465 Entered build tracker: /tmp/pip-build-tracker-m9z6sqv1 2026-04-05T07:22:38,465 Created temporary directory: /tmp/pip-wheel-q5frt0hm 2026-04-05T07:22:38,468 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T07:22:38,471 Created temporary directory: /tmp/pip-ephem-wheel-cache-p2m460s5 2026-04-05T07:22:38,492 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T07:22:38,496 2 location(s) to search for versions of omicverse-skills: 2026-04-05T07:22:38,496 * https://pypi.org/simple/omicverse-skills/ 2026-04-05T07:22:38,496 * https://www.piwheels.org/simple/omicverse-skills/ 2026-04-05T07:22:38,497 Fetching project page and analyzing links: https://pypi.org/simple/omicverse-skills/ 2026-04-05T07:22:38,497 Getting page https://pypi.org/simple/omicverse-skills/ 2026-04-05T07:22:38,499 Found index url https://pypi.org/simple 2026-04-05T07:22:38,727 Fetched page https://pypi.org/simple/omicverse-skills/ as application/vnd.pypi.simple.v1+json 2026-04-05T07:22:38,729 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/9c/ab/10f05fbb75a503681ea79a69db4fc9b4a51e9efe8cc3d8c7024860e788e4/omicverse_skills-0.1.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-05T07:22:38,730 Found link https://files.pythonhosted.org/packages/9f/cd/33af9075cdeb5cda8422702a12ee500a3e67dcdf8e19753ae9875c05d3f5/omicverse_skills-0.1.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.1.0 2026-04-05T07:22:38,731 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/b5/e0/5bf909c4007540eedc84e255a375fcdd700902a6020e9595b786f83b9729/omicverse_skills-0.2.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-05T07:22:38,733 Found link https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.2.0 2026-04-05T07:22:38,734 Fetching project page and analyzing links: https://www.piwheels.org/simple/omicverse-skills/ 2026-04-05T07:22:38,736 Getting page https://www.piwheels.org/simple/omicverse-skills/ 2026-04-05T07:22:38,737 Found index url https://www.piwheels.org/simple 2026-04-05T07:22:39,025 Fetched page https://www.piwheels.org/simple/omicverse-skills/ as text/html 2026-04-05T07:22:39,026 Skipping link: No binaries permitted for omicverse-skills: https://www.piwheels.org/simple/omicverse-skills/omicverse_skills-0.1.0-py3-none-any.whl#sha256=e437d750b17759f8e44d5df94ae4e8fbe3f4b9740155e3a6af36e9fba9bf12ae (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-05T07:22:39,027 Skipping link: not a file: https://www.piwheels.org/simple/omicverse-skills/ 2026-04-05T07:22:39,027 Skipping link: not a file: https://pypi.org/simple/omicverse-skills/ 2026-04-05T07:22:39,046 Given no hashes to check 1 links for project 'omicverse-skills': discarding no candidates 2026-04-05T07:22:39,064 Collecting omicverse-skills==0.2.0 2026-04-05T07:22:39,067 Created temporary directory: /tmp/pip-unpack-d1xb1o6l 2026-04-05T07:22:39,292 Downloading omicverse_skills-0.2.0.tar.gz (177 kB) 2026-04-05T07:22:39,702 Added omicverse-skills==0.2.0 from https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-m9z6sqv1' 2026-04-05T07:22:39,707 Created temporary directory: /tmp/pip-build-env-9ibrss5_ 2026-04-05T07:22:39,711 Installing build dependencies: started 2026-04-05T07:22:39,712 Running command pip subprocess to install build dependencies 2026-04-05T07:22:40,870 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T07:22:41,307 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T07:22:41,330 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T07:22:43,091 Collecting setuptools>=67 2026-04-05T07:22:43,250 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T07:22:43,799 Collecting wheel 2026-04-05T07:22:43,813 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-05T07:22:43,997 Collecting packaging>=24.0 2026-04-05T07:22:44,012 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T07:22:46,999 Installing collected packages: setuptools, packaging, wheel 2026-04-05T07:22:50,347 Creating /tmp/pip-build-env-9ibrss5_/overlay/local/bin 2026-04-05T07:22:50,349 changing mode of /tmp/pip-build-env-9ibrss5_/overlay/local/bin/wheel to 755 2026-04-05T07:22:50,370 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-05T07:22:50,650 Installing build dependencies: finished with status 'done' 2026-04-05T07:22:50,656 Getting requirements to build wheel: started 2026-04-05T07:22:50,657 Running command Getting requirements to build wheel 2026-04-05T07:22:51,365 running egg_info 2026-04-05T07:22:51,371 writing src/omicverse_skills.egg-info/PKG-INFO 2026-04-05T07:22:51,374 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-04-05T07:22:51,377 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-04-05T07:22:51,505 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:51,515 reading manifest template 'MANIFEST.in' 2026-04-05T07:22:51,588 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T07:22:51,590 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T07:22:51,591 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T07:22:51,592 adding license file 'LICENSE' 2026-04-05T07:22:51,603 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:51,701 Getting requirements to build wheel: finished with status 'done' 2026-04-05T07:22:51,704 Created temporary directory: /tmp/pip-modern-metadata-jh0py78o 2026-04-05T07:22:51,707 Preparing metadata (pyproject.toml): started 2026-04-05T07:22:51,708 Running command Preparing metadata (pyproject.toml) 2026-04-05T07:22:52,354 running dist_info 2026-04-05T07:22:52,365 creating /tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info 2026-04-05T07:22:52,366 writing /tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/PKG-INFO 2026-04-05T07:22:52,369 writing dependency_links to /tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/dependency_links.txt 2026-04-05T07:22:52,371 writing top-level names to /tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/top_level.txt 2026-04-05T07:22:52,372 writing manifest file '/tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:52,478 reading manifest file '/tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:52,480 reading manifest template 'MANIFEST.in' 2026-04-05T07:22:52,553 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T07:22:52,554 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T07:22:52,556 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T07:22:52,556 adding license file 'LICENSE' 2026-04-05T07:22:52,565 writing manifest file '/tmp/pip-modern-metadata-jh0py78o/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:52,567 creating '/tmp/pip-modern-metadata-jh0py78o/omicverse_skills-0.2.0.dist-info' 2026-04-05T07:22:52,686 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T07:22:52,690 Source in /tmp/pip-wheel-q5frt0hm/omicverse-skills_447ed3ed944a497589f34fda5ee8455f has version 0.2.0, which satisfies requirement omicverse-skills==0.2.0 from https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz 2026-04-05T07:22:52,691 Removed omicverse-skills==0.2.0 from https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-m9z6sqv1' 2026-04-05T07:22:52,696 Created temporary directory: /tmp/pip-unpack-ddm5vks0 2026-04-05T07:22:52,697 Building wheels for collected packages: omicverse-skills 2026-04-05T07:22:52,701 Created temporary directory: /tmp/pip-wheel-400l8to3 2026-04-05T07:22:52,701 Destination directory: /tmp/pip-wheel-400l8to3 2026-04-05T07:22:52,704 Building wheel for omicverse-skills (pyproject.toml): started 2026-04-05T07:22:52,705 Running command Building wheel for omicverse-skills (pyproject.toml) 2026-04-05T07:22:53,333 running bdist_wheel 2026-04-05T07:22:53,350 running build 2026-04-05T07:22:53,351 running build_py 2026-04-05T07:22:53,357 creating build/lib/omicverse_skills 2026-04-05T07:22:53,359 copying src/omicverse_skills/__init__.py -> build/lib/omicverse_skills 2026-04-05T07:22:53,361 copying src/omicverse_skills/registry.py -> build/lib/omicverse_skills 2026-04-05T07:22:53,379 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-05T07:22:53,381 copying src/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-05T07:22:53,384 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-05T07:22:53,386 copying src/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-05T07:22:53,389 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-05T07:22:53,391 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-05T07:22:53,394 creating build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-05T07:22:53,395 copying src/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-05T07:22:53,398 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-05T07:22:53,400 copying src/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-05T07:22:53,403 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-05T07:22:53,405 copying src/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-05T07:22:53,408 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-05T07:22:53,410 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-05T07:22:53,413 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-05T07:22:53,414 copying src/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-05T07:22:53,417 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-05T07:22:53,419 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-05T07:22:53,421 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-05T07:22:53,423 copying src/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-05T07:22:53,426 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-05T07:22:53,427 copying src/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-05T07:22:53,431 running egg_info 2026-04-05T07:22:53,441 writing src/omicverse_skills.egg-info/PKG-INFO 2026-04-05T07:22:53,443 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-04-05T07:22:53,445 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-04-05T07:22:53,537 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:53,546 reading manifest template 'MANIFEST.in' 2026-04-05T07:22:53,622 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T07:22:53,624 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T07:22:53,626 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T07:22:53,627 adding license file 'LICENSE' 2026-04-05T07:22:53,638 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-05T07:22:53,725 copying src/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance 2026-04-05T07:22:53,728 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-05T07:22:53,729 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-05T07:22:53,732 creating build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:53,733 copying src/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:53,735 copying src/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:53,738 creating build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:53,740 copying src/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:53,742 copying src/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:53,745 creating build/lib/omicverse_skills/skills/gsea-enrichment 2026-04-05T07:22:53,746 copying src/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/lib/omicverse_skills/skills/gsea-enrichment 2026-04-05T07:22:53,749 creating build/lib/omicverse_skills/skills/data-stats-analysis 2026-04-05T07:22:53,750 copying src/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/lib/omicverse_skills/skills/data-stats-analysis 2026-04-05T07:22:53,754 copying src/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity 2026-04-05T07:22:53,756 creating build/lib/omicverse_skills/skills/single-multiomics 2026-04-05T07:22:53,758 copying src/omicverse_skills/skills/single-multiomics/reference.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-04-05T07:22:53,760 copying src/omicverse_skills/skills/single-multiomics/SKILL.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-04-05T07:22:53,763 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-05T07:22:53,766 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-04-05T07:22:53,767 copying src/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-04-05T07:22:53,770 creating build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:53,772 copying src/omicverse_skills/skills/single-popv-annotation/reference.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:53,774 copying src/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:53,778 copying src/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-scenic 2026-04-05T07:22:53,780 creating build/lib/omicverse_skills/skills/reference-label-transfer 2026-04-05T07:22:53,782 copying src/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/lib/omicverse_skills/skills/reference-label-transfer 2026-04-05T07:22:53,785 copying src/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends 2026-04-05T07:22:53,788 creating build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:53,789 copying src/omicverse_skills/skills/fm-foundation-models/reference.md -> build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:53,792 copying src/omicverse_skills/skills/fm-foundation-models/SKILL.md -> build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:53,795 creating build/lib/omicverse_skills/skills/data-io-loading 2026-04-05T07:22:53,796 copying src/omicverse_skills/skills/data-io-loading/reference.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-04-05T07:22:53,799 copying src/omicverse_skills/skills/data-io-loading/SKILL.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-04-05T07:22:53,802 creating build/lib/omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:53,803 copying src/omicverse_skills/skills/plotting-visualization/reference.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:53,805 copying src/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:53,809 copying src/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference 2026-04-05T07:22:53,812 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-05T07:22:53,814 creating build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:53,816 copying src/omicverse_skills/skills/spatial-tutorials/reference.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:53,818 copying src/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:53,821 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-05T07:22:53,823 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-05T07:22:53,826 creating build/lib/omicverse_skills/skills/datasets-loading 2026-04-05T07:22:53,827 copying src/omicverse_skills/skills/datasets-loading/reference.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-04-05T07:22:53,830 copying src/omicverse_skills/skills/datasets-loading/SKILL.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-04-05T07:22:53,833 creating build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:53,834 copying src/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:53,836 copying src/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:53,839 creating build/lib/omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:53,840 copying src/omicverse_skills/skills/fastq-analysis/reference.md -> build/lib/omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:53,843 copying src/omicverse_skills/skills/fastq-analysis/SKILL.md -> build/lib/omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:53,846 creating build/lib/omicverse_skills/skills/data-viz-plots 2026-04-05T07:22:53,847 copying src/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/lib/omicverse_skills/skills/data-viz-plots 2026-04-05T07:22:53,851 creating build/lib/omicverse_skills/skills/data-export-excel 2026-04-05T07:22:53,852 copying src/omicverse_skills/skills/data-export-excel/SKILL.md -> build/lib/omicverse_skills/skills/data-export-excel 2026-04-05T07:22:53,855 creating build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:53,856 copying src/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:53,859 copying src/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:53,862 copying src/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2 2026-04-05T07:22:53,865 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-05T07:22:53,868 creating build/lib/omicverse_skills/skills/data-export-pdf 2026-04-05T07:22:53,869 copying src/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/lib/omicverse_skills/skills/data-export-pdf 2026-04-05T07:22:53,872 creating build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:53,873 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:53,876 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:53,879 creating build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:53,880 copying src/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:53,882 copying src/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:53,885 creating build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:53,886 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:53,888 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:53,891 copying src/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression 2026-04-05T07:22:53,894 creating build/lib/omicverse_skills/skills/single-cell-annotation 2026-04-05T07:22:53,895 copying src/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-annotation 2026-04-05T07:22:53,897 creating build/lib/omicverse_skills/skills/data-transform 2026-04-05T07:22:53,898 copying src/omicverse_skills/skills/data-transform/SKILL.md -> build/lib/omicverse_skills/skills/data-transform 2026-04-05T07:22:53,901 copying src/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration 2026-04-05T07:22:53,903 creating build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:53,904 copying src/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:53,906 copying src/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:53,909 creating build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:53,910 copying src/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:53,912 copying src/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:53,915 creating build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:53,916 copying src/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:53,918 copying src/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:53,920 creating build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:53,921 copying src/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:53,923 copying src/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:53,926 creating build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-04-05T07:22:53,927 copying src/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-04-05T07:22:53,929 creating build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:53,930 copying src/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:53,932 copying src/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:53,935 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:53,936 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:53,938 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:53,940 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:53,942 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:53,944 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:53,945 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:53,948 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:53,950 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:53,952 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:53,953 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:53,955 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:53,957 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:53,959 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:53,961 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:53,962 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:53,964 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:53,966 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:53,968 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:53,970 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:53,971 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:53,973 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:53,976 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:53,978 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:53,980 creating build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:53,981 copying src/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:53,983 copying src/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:53,985 copying src/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:53,987 copying src/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:53,990 creating build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:53,991 copying src/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:53,993 copying src/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:53,995 copying src/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:53,997 copying src/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:53,999 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,000 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,002 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,004 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,006 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,008 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,009 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,011 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,014 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,016 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,018 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,019 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,021 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,023 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,025 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,027 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,028 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,030 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,032 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,035 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,036 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,037 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,040 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,042 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,044 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,046 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,047 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,049 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,051 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,056 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,058 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,059 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,061 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,063 copying src/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,065 copying src/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,068 creating build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,069 copying src/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,071 copying src/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,074 copying src/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,076 copying src/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,078 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,079 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,081 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,084 copying src/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,086 copying src/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,088 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,089 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,091 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,094 copying src/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,096 copying src/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,121 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints 2026-04-05T07:22:54,122 copying src/omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints/SKILL-checkpoint.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints 2026-04-05T07:22:54,181 installing to build/bdist.linux-armv7l/wheel 2026-04-05T07:22:54,181 running install 2026-04-05T07:22:54,204 running install_lib 2026-04-05T07:22:54,209 creating build/bdist.linux-armv7l/wheel 2026-04-05T07:22:54,212 creating build/bdist.linux-armv7l/wheel/omicverse_skills 2026-04-05T07:22:54,213 copying build/lib/omicverse_skills/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-05T07:22:54,215 copying build/lib/omicverse_skills/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-05T07:22:54,218 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills 2026-04-05T07:22:54,219 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance 2026-04-05T07:22:54,221 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:54,222 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:54,224 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:54,226 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:54,228 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-05T07:22:54,230 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-05T07:22:54,231 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-05T07:22:54,233 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance 2026-04-05T07:22:54,236 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-05T07:22:54,238 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:54,240 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:54,242 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:54,245 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-05T07:22:54,247 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-05T07:22:54,250 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:54,252 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:54,254 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-04-05T07:22:54,258 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:54,259 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:54,262 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-04-05T07:22:54,265 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/gsea-enrichment 2026-04-05T07:22:54,266 copying build/lib/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/gsea-enrichment 2026-04-05T07:22:54,270 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-stats-analysis 2026-04-05T07:22:54,271 copying build/lib/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-stats-analysis 2026-04-05T07:22:54,275 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity 2026-04-05T07:22:54,277 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:54,279 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:54,281 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:54,284 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:54,286 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-05T07:22:54,289 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-05T07:22:54,290 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-05T07:22:54,293 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity 2026-04-05T07:22:54,296 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-multiomics 2026-04-05T07:22:54,297 copying build/lib/omicverse_skills/skills/single-multiomics/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-04-05T07:22:54,300 copying build/lib/omicverse_skills/skills/single-multiomics/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-04-05T07:22:54,304 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-05T07:22:54,306 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:54,307 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:54,310 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:54,312 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:54,314 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-05T07:22:54,317 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-05T07:22:54,319 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-05T07:22:54,321 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-05T07:22:54,324 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment 2026-04-05T07:22:54,326 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:54,328 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:54,330 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:54,333 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:54,335 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-05T07:22:54,337 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment 2026-04-05T07:22:54,340 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:54,340 copying build/lib/omicverse_skills/skills/single-popv-annotation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:54,343 copying build/lib/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-04-05T07:22:54,346 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic 2026-04-05T07:22:54,347 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:54,348 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:54,350 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:54,352 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:54,354 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-05T07:22:54,356 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-05T07:22:54,357 copying build/lib/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/scripts 2026-04-05T07:22:54,359 copying build/lib/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic 2026-04-05T07:22:54,361 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer 2026-04-05T07:22:54,363 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:54,364 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:54,366 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:54,368 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:54,370 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-05T07:22:54,372 copying build/lib/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer 2026-04-05T07:22:54,374 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends 2026-04-05T07:22:54,376 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,377 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,379 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,381 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,383 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-05T07:22:54,385 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-05T07:22:54,386 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-05T07:22:54,388 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends 2026-04-05T07:22:54,391 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:54,392 copying build/lib/omicverse_skills/skills/fm-foundation-models/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:54,394 copying build/lib/omicverse_skills/skills/fm-foundation-models/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fm-foundation-models 2026-04-05T07:22:54,397 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-io-loading 2026-04-05T07:22:54,398 copying build/lib/omicverse_skills/skills/data-io-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-04-05T07:22:54,401 copying build/lib/omicverse_skills/skills/data-io-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-04-05T07:22:54,403 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:54,404 copying build/lib/omicverse_skills/skills/plotting-visualization/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:54,406 copying build/lib/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-04-05T07:22:54,410 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference 2026-04-05T07:22:54,411 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,412 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,414 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,416 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,418 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-05T07:22:54,421 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-05T07:22:54,422 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-05T07:22:54,424 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference 2026-04-05T07:22:54,426 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-05T07:22:54,428 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,429 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,431 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,433 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,434 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-05T07:22:54,437 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-05T07:22:54,437 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-05T07:22:54,439 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-05T07:22:54,442 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:54,443 copying build/lib/omicverse_skills/skills/spatial-tutorials/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:54,445 copying build/lib/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-04-05T07:22:54,448 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-05T07:22:54,450 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,451 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,453 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,454 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,456 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-05T07:22:54,458 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-05T07:22:54,461 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/datasets-loading 2026-04-05T07:22:54,462 copying build/lib/omicverse_skills/skills/datasets-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-04-05T07:22:54,464 copying build/lib/omicverse_skills/skills/datasets-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-04-05T07:22:54,467 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:54,468 copying build/lib/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:54,471 copying build/lib/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-04-05T07:22:54,473 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:54,474 copying build/lib/omicverse_skills/skills/fastq-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:54,476 copying build/lib/omicverse_skills/skills/fastq-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fastq-analysis 2026-04-05T07:22:54,479 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-viz-plots 2026-04-05T07:22:54,480 copying build/lib/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-viz-plots 2026-04-05T07:22:54,483 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-excel 2026-04-05T07:22:54,484 copying build/lib/omicverse_skills/skills/data-export-excel/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-excel 2026-04-05T07:22:54,486 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:54,487 copying build/lib/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:54,489 copying build/lib/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-04-05T07:22:54,492 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2 2026-04-05T07:22:54,494 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,495 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,497 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,498 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,500 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-05T07:22:54,503 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-05T07:22:54,504 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-05T07:22:54,506 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2 2026-04-05T07:22:54,508 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-05T07:22:54,510 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,511 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,513 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,515 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,517 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-05T07:22:54,519 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-05T07:22:54,520 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-05T07:22:54,522 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-05T07:22:54,524 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-pdf 2026-04-05T07:22:54,525 copying build/lib/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-pdf 2026-04-05T07:22:54,528 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:54,529 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:54,531 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-05T07:22:54,534 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:54,535 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:54,538 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-04-05T07:22:54,540 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:54,541 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:54,543 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-05T07:22:54,546 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression 2026-04-05T07:22:54,548 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,549 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,551 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,553 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,555 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-05T07:22:54,557 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-05T07:22:54,558 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-05T07:22:54,560 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression 2026-04-05T07:22:54,562 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation 2026-04-05T07:22:54,564 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,565 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,567 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,569 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,571 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-05T07:22:54,573 copying build/lib/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation 2026-04-05T07:22:54,576 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-transform 2026-04-05T07:22:54,577 copying build/lib/omicverse_skills/skills/data-transform/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-transform 2026-04-05T07:22:54,580 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration 2026-04-05T07:22:54,582 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,583 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,585 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,587 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,589 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-05T07:22:54,591 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-05T07:22:54,592 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-05T07:22:54,594 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration 2026-04-05T07:22:54,597 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:54,598 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:54,599 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-04-05T07:22:54,602 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:54,603 copying build/lib/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:54,605 copying build/lib/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-04-05T07:22:54,608 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:54,609 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:54,612 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-04-05T07:22:54,614 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:54,616 copying build/lib/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:54,618 copying build/lib/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-04-05T07:22:54,621 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing 2026-04-05T07:22:54,623 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints 2026-04-05T07:22:54,624 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints/SKILL-checkpoint.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints 2026-04-05T07:22:54,627 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,629 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,631 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,633 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,635 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-05T07:22:54,637 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing 2026-04-05T07:22:54,640 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:54,642 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:54,644 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-04-05T07:22:54,646 running install_egg_info 2026-04-05T07:22:54,652 Copying src/omicverse_skills.egg-info to build/bdist.linux-armv7l/wheel/./omicverse_skills-0.2.0-py3.11.egg-info 2026-04-05T07:22:54,660 running install_scripts 2026-04-05T07:22:54,670 creating build/bdist.linux-armv7l/wheel/omicverse_skills-0.2.0.dist-info/WHEEL 2026-04-05T07:22:54,673 creating '/tmp/pip-wheel-400l8to3/.tmp-l3dvdtvs/omicverse_skills-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T07:22:54,675 adding 'omicverse_skills/__init__.py' 2026-04-05T07:22:54,677 adding 'omicverse_skills/registry.py' 2026-04-05T07:22:54,680 adding 'omicverse_skills/skills/biocontext-knowledge/SKILL.md' 2026-04-05T07:22:54,682 adding 'omicverse_skills/skills/biocontext-knowledge/reference.md' 2026-04-05T07:22:54,685 adding 'omicverse_skills/skills/bulk-combat-correction/SKILL.md' 2026-04-05T07:22:54,686 adding 'omicverse_skills/skills/bulk-combat-correction/reference.md' 2026-04-05T07:22:54,689 adding 'omicverse_skills/skills/bulk-deg-analysis/SKILL.md' 2026-04-05T07:22:54,690 adding 'omicverse_skills/skills/bulk-deg-analysis/reference.md' 2026-04-05T07:22:54,693 adding 'omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md' 2026-04-05T07:22:54,694 adding 'omicverse_skills/skills/bulk-deseq2-analysis/reference.md' 2026-04-05T07:22:54,697 adding 'omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md' 2026-04-05T07:22:54,698 adding 'omicverse_skills/skills/bulk-stringdb-ppi/reference.md' 2026-04-05T07:22:54,701 adding 'omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md' 2026-04-05T07:22:54,702 adding 'omicverse_skills/skills/bulk-to-single-deconvolution/reference.md' 2026-04-05T07:22:54,705 adding 'omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md' 2026-04-05T07:22:54,707 adding 'omicverse_skills/skills/bulk-trajblend-interpolation/reference.md' 2026-04-05T07:22:54,709 adding 'omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md' 2026-04-05T07:22:54,711 adding 'omicverse_skills/skills/bulk-wgcna-analysis/reference.md' 2026-04-05T07:22:54,713 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md' 2026-04-05T07:22:54,715 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md' 2026-04-05T07:22:54,717 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md' 2026-04-05T07:22:54,719 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md' 2026-04-05T07:22:54,721 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md' 2026-04-05T07:22:54,723 adding 'omicverse_skills/skills/data-export-excel/SKILL.md' 2026-04-05T07:22:54,726 adding 'omicverse_skills/skills/data-export-pdf/SKILL.md' 2026-04-05T07:22:54,729 adding 'omicverse_skills/skills/data-io-loading/SKILL.md' 2026-04-05T07:22:54,731 adding 'omicverse_skills/skills/data-io-loading/reference.md' 2026-04-05T07:22:54,734 adding 'omicverse_skills/skills/data-stats-analysis/SKILL.md' 2026-04-05T07:22:54,738 adding 'omicverse_skills/skills/data-transform/SKILL.md' 2026-04-05T07:22:54,741 adding 'omicverse_skills/skills/data-viz-plots/SKILL.md' 2026-04-05T07:22:54,744 adding 'omicverse_skills/skills/datasets-loading/SKILL.md' 2026-04-05T07:22:54,746 adding 'omicverse_skills/skills/datasets-loading/reference.md' 2026-04-05T07:22:54,748 adding 'omicverse_skills/skills/fastq-analysis/SKILL.md' 2026-04-05T07:22:54,750 adding 'omicverse_skills/skills/fastq-analysis/reference.md' 2026-04-05T07:22:54,753 adding 'omicverse_skills/skills/fm-foundation-models/SKILL.md' 2026-04-05T07:22:54,755 adding 'omicverse_skills/skills/fm-foundation-models/reference.md' 2026-04-05T07:22:54,757 adding 'omicverse_skills/skills/gsea-enrichment/SKILL.md' 2026-04-05T07:22:54,760 adding 'omicverse_skills/skills/plotting-visualization/SKILL.md' 2026-04-05T07:22:54,762 adding 'omicverse_skills/skills/plotting-visualization/reference.md' 2026-04-05T07:22:54,764 adding 'omicverse_skills/skills/reference-label-transfer/SKILL.md' 2026-04-05T07:22:54,767 adding 'omicverse_skills/skills/reference-label-transfer/references/compatibility.md' 2026-04-05T07:22:54,768 adding 'omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md' 2026-04-05T07:22:54,770 adding 'omicverse_skills/skills/reference-label-transfer/references/source-grounding.md' 2026-04-05T07:22:54,772 adding 'omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md' 2026-04-05T07:22:54,775 adding 'omicverse_skills/skills/single-cell-annotation/SKILL.md' 2026-04-05T07:22:54,777 adding 'omicverse_skills/skills/single-cell-annotation/references/backend-selection.md' 2026-04-05T07:22:54,778 adding 'omicverse_skills/skills/single-cell-annotation/references/compatibility.md' 2026-04-05T07:22:54,780 adding 'omicverse_skills/skills/single-cell-annotation/references/source-grounding.md' 2026-04-05T07:22:54,782 adding 'omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md' 2026-04-05T07:22:54,785 adding 'omicverse_skills/skills/single-cell-batch-integration/SKILL.md' 2026-04-05T07:22:54,787 adding 'omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md' 2026-04-05T07:22:54,788 adding 'omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md' 2026-04-05T07:22:54,790 adding 'omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md' 2026-04-05T07:22:54,792 adding 'omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md' 2026-04-05T07:22:54,795 adding 'omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py' 2026-04-05T07:22:54,798 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md' 2026-04-05T07:22:54,800 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md' 2026-04-05T07:22:54,802 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md' 2026-04-05T07:22:54,803 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md' 2026-04-05T07:22:54,805 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md' 2026-04-05T07:22:54,808 adding 'omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py' 2026-04-05T07:22:54,810 adding 'omicverse_skills/skills/single-cell-clustering-backends/SKILL.md' 2026-04-05T07:22:54,812 adding 'omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md' 2026-04-05T07:22:54,814 adding 'omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md' 2026-04-05T07:22:54,816 adding 'omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md' 2026-04-05T07:22:54,818 adding 'omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md' 2026-04-05T07:22:54,820 adding 'omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py' 2026-04-05T07:22:54,822 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md' 2026-04-05T07:22:54,824 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md' 2026-04-05T07:22:54,826 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md' 2026-04-05T07:22:54,827 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md' 2026-04-05T07:22:54,829 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md' 2026-04-05T07:22:54,831 adding 'omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py' 2026-04-05T07:22:54,834 adding 'omicverse_skills/skills/single-cell-cytotrace2/SKILL.md' 2026-04-05T07:22:54,836 adding 'omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md' 2026-04-05T07:22:54,838 adding 'omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md' 2026-04-05T07:22:54,840 adding 'omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md' 2026-04-05T07:22:54,841 adding 'omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md' 2026-04-05T07:22:54,844 adding 'omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py' 2026-04-05T07:22:54,846 adding 'omicverse_skills/skills/single-cell-differential-abundance/SKILL.md' 2026-04-05T07:22:54,848 adding 'omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md' 2026-04-05T07:22:54,850 adding 'omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md' 2026-04-05T07:22:54,852 adding 'omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md' 2026-04-05T07:22:54,853 adding 'omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md' 2026-04-05T07:22:54,855 adding 'omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py' 2026-04-05T07:22:54,858 adding 'omicverse_skills/skills/single-cell-differential-expression/SKILL.md' 2026-04-05T07:22:54,860 adding 'omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md' 2026-04-05T07:22:54,862 adding 'omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md' 2026-04-05T07:22:54,863 adding 'omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md' 2026-04-05T07:22:54,865 adding 'omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md' 2026-04-05T07:22:54,867 adding 'omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py' 2026-04-05T07:22:54,870 adding 'omicverse_skills/skills/single-cell-kb-alignment/SKILL.md' 2026-04-05T07:22:54,871 adding 'omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md' 2026-04-05T07:22:54,873 adding 'omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md' 2026-04-05T07:22:54,875 adding 'omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md' 2026-04-05T07:22:54,876 adding 'omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md' 2026-04-05T07:22:54,878 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md' 2026-04-05T07:22:54,880 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md' 2026-04-05T07:22:54,882 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md' 2026-04-05T07:22:54,884 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md' 2026-04-05T07:22:54,885 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md' 2026-04-05T07:22:54,888 adding 'omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py' 2026-04-05T07:22:54,890 adding 'omicverse_skills/skills/single-cell-preprocessing/SKILL.md' 2026-04-05T07:22:54,893 adding 'omicverse_skills/skills/single-cell-preprocessing/.ipynb_checkpoints/SKILL-checkpoint.md' 2026-04-05T07:22:54,895 adding 'omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md' 2026-04-05T07:22:54,897 adding 'omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md' 2026-04-05T07:22:54,899 adding 'omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md' 2026-04-05T07:22:54,901 adding 'omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md' 2026-04-05T07:22:54,903 adding 'omicverse_skills/skills/single-cell-rna-velocity/SKILL.md' 2026-04-05T07:22:54,906 adding 'omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md' 2026-04-05T07:22:54,907 adding 'omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md' 2026-04-05T07:22:54,909 adding 'omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md' 2026-04-05T07:22:54,910 adding 'omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md' 2026-04-05T07:22:54,912 adding 'omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py' 2026-04-05T07:22:54,915 adding 'omicverse_skills/skills/single-cell-scenic/SKILL.md' 2026-04-05T07:22:54,917 adding 'omicverse_skills/skills/single-cell-scenic/references/branch-selection.md' 2026-04-05T07:22:54,919 adding 'omicverse_skills/skills/single-cell-scenic/references/compatibility.md' 2026-04-05T07:22:54,920 adding 'omicverse_skills/skills/single-cell-scenic/references/source-grounding.md' 2026-04-05T07:22:54,922 adding 'omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md' 2026-04-05T07:22:54,924 adding 'omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py' 2026-04-05T07:22:54,926 adding 'omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md' 2026-04-05T07:22:54,928 adding 'omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md' 2026-04-05T07:22:54,929 adding 'omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md' 2026-04-05T07:22:54,931 adding 'omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md' 2026-04-05T07:22:54,933 adding 'omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md' 2026-04-05T07:22:54,936 adding 'omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md' 2026-04-05T07:22:54,937 adding 'omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md' 2026-04-05T07:22:54,939 adding 'omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md' 2026-04-05T07:22:54,941 adding 'omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md' 2026-04-05T07:22:54,943 adding 'omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py' 2026-04-05T07:22:54,945 adding 'omicverse_skills/skills/single-cellfate-analysis/SKILL.md' 2026-04-05T07:22:54,947 adding 'omicverse_skills/skills/single-cellfate-analysis/reference.md' 2026-04-05T07:22:54,950 adding 'omicverse_skills/skills/single-downstream-analysis/SKILL.md' 2026-04-05T07:22:54,952 adding 'omicverse_skills/skills/single-downstream-analysis/reference.md' 2026-04-05T07:22:54,954 adding 'omicverse_skills/skills/single-multiomics/SKILL.md' 2026-04-05T07:22:54,956 adding 'omicverse_skills/skills/single-multiomics/reference.md' 2026-04-05T07:22:54,959 adding 'omicverse_skills/skills/single-popv-annotation/SKILL.md' 2026-04-05T07:22:54,961 adding 'omicverse_skills/skills/single-popv-annotation/reference.md' 2026-04-05T07:22:54,963 adding 'omicverse_skills/skills/single-to-spatial-mapping/SKILL.md' 2026-04-05T07:22:54,964 adding 'omicverse_skills/skills/single-to-spatial-mapping/reference.md' 2026-04-05T07:22:54,967 adding 'omicverse_skills/skills/spatial-tutorials/SKILL.md' 2026-04-05T07:22:54,969 adding 'omicverse_skills/skills/spatial-tutorials/reference.md' 2026-04-05T07:22:54,972 adding 'omicverse_skills/skills/tcga-preprocessing/SKILL.md' 2026-04-05T07:22:54,974 adding 'omicverse_skills/skills/tcga-preprocessing/reference.md' 2026-04-05T07:22:54,977 adding 'omicverse_skills-0.2.0.dist-info/licenses/LICENSE' 2026-04-05T07:22:54,979 adding 'omicverse_skills-0.2.0.dist-info/METADATA' 2026-04-05T07:22:54,980 adding 'omicverse_skills-0.2.0.dist-info/WHEEL' 2026-04-05T07:22:54,981 adding 'omicverse_skills-0.2.0.dist-info/top_level.txt' 2026-04-05T07:22:54,985 adding 'omicverse_skills-0.2.0.dist-info/RECORD' 2026-04-05T07:22:54,991 removing build/bdist.linux-armv7l/wheel 2026-04-05T07:22:55,143 Building wheel for omicverse-skills (pyproject.toml): finished with status 'done' 2026-04-05T07:22:55,155 Created wheel for omicverse-skills: filename=omicverse_skills-0.2.0-py3-none-any.whl size=265779 sha256=87d48d87edcc650a3962c213a91f329ecdcef1dd5c5023c0bd63d801cc66cc74 2026-04-05T07:22:55,156 Stored in directory: /tmp/pip-ephem-wheel-cache-p2m460s5/wheels/5c/37/3c/8df8d59833cc15d79df03843638ab0f61179f7136f6d64fc0b 2026-04-05T07:22:55,170 Successfully built omicverse-skills 2026-04-05T07:22:55,185 Removed build tracker: 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