2026-04-05T09:34:55,163 Created temporary directory: /tmp/pip-ephem-wheel-cache-g3ist5_t 2026-04-05T09:34:55,165 Created temporary directory: /tmp/pip-build-tracker-86d8o2yq 2026-04-05T09:34:55,166 Initialized build tracking at /tmp/pip-build-tracker-86d8o2yq 2026-04-05T09:34:55,166 Created build tracker: /tmp/pip-build-tracker-86d8o2yq 2026-04-05T09:34:55,166 Entered build tracker: /tmp/pip-build-tracker-86d8o2yq 2026-04-05T09:34:55,167 Created temporary directory: /tmp/pip-wheel-iane3k3j 2026-04-05T09:34:55,170 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T09:34:55,173 Created temporary directory: /tmp/pip-ephem-wheel-cache-i1js_hfj 2026-04-05T09:34:55,194 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T09:34:55,198 2 location(s) to search for versions of efishent: 2026-04-05T09:34:55,198 * https://pypi.org/simple/efishent/ 2026-04-05T09:34:55,198 * https://www.piwheels.org/simple/efishent/ 2026-04-05T09:34:55,199 Fetching project page and analyzing links: https://pypi.org/simple/efishent/ 2026-04-05T09:34:55,200 Getting page https://pypi.org/simple/efishent/ 2026-04-05T09:34:55,201 Found index url https://pypi.org/simple 2026-04-05T09:34:55,440 Fetched page https://pypi.org/simple/efishent/ as application/vnd.pypi.simple.v1+json 2026-04-05T09:34:55,445 Found link https://files.pythonhosted.org/packages/e2/2c/cf7d5a5be6e84e7e329b534a05d89d2db8218048a28c4e80818b4cfae92d/eFISHent-0.0.1.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>3.9), version: 0.0.1 2026-04-05T09:34:55,446 Found link https://files.pythonhosted.org/packages/1b/6d/e04885c0954cb2a767ea5afd763bb193d1759fd9a108ff47fe5c6ae12226/eFISHent-0.0.2.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.7), version: 0.0.2 2026-04-05T09:34:55,447 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/0b/c4/2dbaa48be02a5d5b51ca3f95d6e3970a1d8de3bccfa74330a3a427413ec1/eFISHent-0.0.3-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.7) 2026-04-05T09:34:55,448 Found link https://files.pythonhosted.org/packages/7c/38/3cdd097202e06174dc949e08f46a8476a392224a0a3a7bbf76f4472b124c/eFISHent-0.0.3.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.7), version: 0.0.3 2026-04-05T09:34:55,449 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/d4/14/ef578628f34f7567bcce9889ff00aca27da51ac282757761bd73b6a5300d/eFISHent-0.0.4-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,450 Found link https://files.pythonhosted.org/packages/ae/4b/c1fc2fecd6f2e011b5f0fa20af95deb154940dbcbc75c0b64da28fad7596/eFISHent-0.0.4.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.4 2026-04-05T09:34:55,451 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/8a/91/b3ae940cef1d924534652a7b7ad11c28cbcddc788bb29b688a1c4f60009d/eFISHent-0.0.5-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,451 Found link https://files.pythonhosted.org/packages/83/76/80891af507e5cf883195304428ab91e5905b65e772fac2095225636fd738/eFISHent-0.0.5.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.5 2026-04-05T09:34:55,452 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/bc/ec/8d61161ec14ea79f34114fb832680f0bc462f2dce8a1944ec049563e2784/efishent-0.0.7-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,453 Found link https://files.pythonhosted.org/packages/d3/13/6d429bcb2a4da2cbd03aff6874d2afe778ac681ea0c5a8476b18609d996e/efishent-0.0.7.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.7 2026-04-05T09:34:55,454 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/60/72/232f3d80c8abec6d9e49afe1f459e54862650633ce6920ba48a2aeb8461c/efishent-0.0.8-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,455 Found link https://files.pythonhosted.org/packages/22/ea/75207a248bd229ff01b371c35c9297bcac191b1de8f4f8b608db78ace84b/efishent-0.0.8.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.8 2026-04-05T09:34:55,456 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/da/2f/05de2636b6c75bbab631ba8494016846366d63544e0906ac47b535f1ae40/efishent-0.0.9-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,457 Found link https://files.pythonhosted.org/packages/5c/f2/4822805871815b0db01a86c27522e87ac7894f973cd320489c1574908592/efishent-0.0.9.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.9 2026-04-05T09:34:55,457 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/3d/fd/77b88132c4493d5d77568b2c0c6e20316cab877eb2b70f2f0eb4b01757b1/efishent-0.0.11-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,458 Found link https://files.pythonhosted.org/packages/ba/33/aed5967982ef50b5529fa2d02bf35166e3f006fc29e79ba6c5bffd8f9bec/efishent-0.0.11.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.11 2026-04-05T09:34:55,459 Skipping link: No binaries permitted for efishent: https://files.pythonhosted.org/packages/7e/7a/4b557090a258740a1a8be27513ad30228ce3cde546f67a2a42aa9a948b51/efishent-0.0.12-py3-none-any.whl (from https://pypi.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,460 Found link https://files.pythonhosted.org/packages/19/17/2d553c1a5b282e2c54bc903926096bb4de589fc2038af5a1a9bb66a0065f/efishent-0.0.12.tar.gz (from https://pypi.org/simple/efishent/) (requires-python:>=3.8), version: 0.0.12 2026-04-05T09:34:55,461 Fetching project page and analyzing links: https://www.piwheels.org/simple/efishent/ 2026-04-05T09:34:55,462 Getting page https://www.piwheels.org/simple/efishent/ 2026-04-05T09:34:55,463 Found index url https://www.piwheels.org/simple 2026-04-05T09:34:55,832 Fetched page https://www.piwheels.org/simple/efishent/ as text/html 2026-04-05T09:34:55,836 Skipping link: No binaries permitted for efishent: https://www.piwheels.org/simple/efishent/efishent-0.0.11-py3-none-any.whl#sha256=2922584b42d0277c6f8815b97350fb70130086b312eaa4cf47980cecccfea991 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,837 Skipping link: No binaries permitted for efishent: https://www.piwheels.org/simple/efishent/efishent-0.0.9-py3-none-any.whl#sha256=24fae90e78894a32878541aa5858f1a4861174058e3dc7da3d3e59c17d10e64e (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,838 Skipping link: No binaries permitted for efishent: https://www.piwheels.org/simple/efishent/efishent-0.0.8-py3-none-any.whl#sha256=d499d4fc4d92413671203aa610466707717f10d4f7ef5e139fd0ce08e034ea14 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,838 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/efishent-0.0.7-py3-none-any.whl#sha256=53739ef8bb4a81d07f33d44b47229249878f07e0cd7f522b6e755221240b0826 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,839 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/eFISHent-0.0.5-py3-none-any.whl#sha256=52a9305d3023e96658e150d1eb743d122c0c2d3d035b4f089ea7ac3a90ec2227 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,839 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/eFISHent-0.0.4-py3-none-any.whl#sha256=a0fced7c03a7f2980ec1b77a09fbde6b06f3471d474cbd6c2a0226e7eae3d9f4 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.8) 2026-04-05T09:34:55,840 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/eFISHent-0.0.3-py3-none-any.whl#sha256=2630fc0f3eb21e001c3fdb4b1fa4032537d8bfcfb6309038a3b62b582fbbfe47 (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.7) 2026-04-05T09:34:55,841 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/eFISHent-0.0.2-py3-none-any.whl#sha256=ef8bd7d96a16e1353939128da53ed0f24fb76d56c258f4089ab106550b821bac (from https://www.piwheels.org/simple/efishent/) (requires-python:>=3.7) 2026-04-05T09:34:55,841 Skipping link: No binaries permitted for efishent: https://archive1.piwheels.org/simple/efishent/eFISHent-0.0.1-py2.py3-none-any.whl#sha256=bd0922ddbe9ed4e571408464b76cd95dbd713299c18231e28f3c4b7dbe9852c1 (from https://www.piwheels.org/simple/efishent/) (requires-python:>3.9) 2026-04-05T09:34:55,842 Skipping link: not a file: https://www.piwheels.org/simple/efishent/ 2026-04-05T09:34:55,842 Skipping link: not a file: https://pypi.org/simple/efishent/ 2026-04-05T09:34:55,863 Given no hashes to check 1 links for project 'efishent': discarding no candidates 2026-04-05T09:34:55,883 Collecting efishent==0.0.12 2026-04-05T09:34:55,885 Created temporary directory: /tmp/pip-unpack-s1168z74 2026-04-05T09:34:56,127 Downloading efishent-0.0.12.tar.gz (2.8 MB) 2026-04-05T09:34:57,716 Added efishent==0.0.12 from https://files.pythonhosted.org/packages/19/17/2d553c1a5b282e2c54bc903926096bb4de589fc2038af5a1a9bb66a0065f/efishent-0.0.12.tar.gz to build tracker '/tmp/pip-build-tracker-86d8o2yq' 2026-04-05T09:34:57,721 Created temporary directory: /tmp/pip-build-env-sldsdhbu 2026-04-05T09:34:57,727 Installing build dependencies: started 2026-04-05T09:34:57,728 Running command pip subprocess to install build dependencies 2026-04-05T09:34:57,760 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-05T09:34:57,799 Traceback (most recent call last): 2026-04-05T09:34:57,800 File "", line 192, in addpackage 2026-04-05T09:34:57,801 File "", line 1, in 2026-04-05T09:34:57,801 ModuleNotFoundError: No module named 'outofcuda' 2026-04-05T09:34:57,803 Remainder of file ignored 2026-04-05T09:34:58,899 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T09:34:59,314 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T09:34:59,337 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T09:35:01,229 Collecting setuptools>=61.0 2026-04-05T09:35:01,325 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T09:35:01,591 Collecting wheel 2026-04-05T09:35:01,607 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-05T09:35:01,793 Collecting packaging>=24.0 2026-04-05T09:35:01,808 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T09:35:04,750 Installing collected packages: setuptools, packaging, wheel 2026-04-05T09:35:08,412 Creating /tmp/pip-build-env-sldsdhbu/overlay/local/bin 2026-04-05T09:35:08,415 changing mode of /tmp/pip-build-env-sldsdhbu/overlay/local/bin/wheel to 755 2026-04-05T09:35:08,437 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-05T09:35:08,714 Installing build dependencies: finished with status 'done' 2026-04-05T09:35:08,721 Getting requirements to build wheel: started 2026-04-05T09:35:08,722 Running command Getting requirements to build wheel 2026-04-05T09:35:09,358 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-04-05T09:35:09,358 corresp(dist, value, root_dir) 2026-04-05T09:35:09,359 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-05T09:35:09,360 corresp(dist, value, root_dir) 2026-04-05T09:35:09,445 running egg_info 2026-04-05T09:35:09,451 writing eFISHent.egg-info/PKG-INFO 2026-04-05T09:35:09,455 writing dependency_links to eFISHent.egg-info/dependency_links.txt 2026-04-05T09:35:09,457 writing entry points to eFISHent.egg-info/entry_points.txt 2026-04-05T09:35:09,459 writing requirements to eFISHent.egg-info/requires.txt 2026-04-05T09:35:09,460 writing top-level names to eFISHent.egg-info/top_level.txt 2026-04-05T09:35:09,503 reading manifest file 'eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:09,518 reading manifest template 'MANIFEST.in' 2026-04-05T09:35:09,520 no previously-included directories found matching 'tests' 2026-04-05T09:35:09,521 no previously-included directories found matching 'dist' 2026-04-05T09:35:09,522 warning: no previously-included files found matching '.*' 2026-04-05T09:35:09,837 warning: no files found matching 'LICENSE' 2026-04-05T09:35:09,838 warning: no files found matching 'environment.yml' 2026-04-05T09:35:09,838 warning: no files found matching 'requirements.txt' 2026-04-05T09:35:09,855 writing manifest file 'eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:09,953 Getting requirements to build wheel: finished with status 'done' 2026-04-05T09:35:09,957 Created temporary directory: /tmp/pip-modern-metadata-1xrgeig8 2026-04-05T09:35:09,959 Preparing metadata (pyproject.toml): started 2026-04-05T09:35:09,960 Running command Preparing metadata (pyproject.toml) 2026-04-05T09:35:10,564 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-04-05T09:35:10,564 corresp(dist, value, root_dir) 2026-04-05T09:35:10,565 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-05T09:35:10,566 corresp(dist, value, root_dir) 2026-04-05T09:35:10,648 running dist_info 2026-04-05T09:35:10,659 creating /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info 2026-04-05T09:35:10,660 writing /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/PKG-INFO 2026-04-05T09:35:10,665 writing dependency_links to /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/dependency_links.txt 2026-04-05T09:35:10,666 writing entry points to /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/entry_points.txt 2026-04-05T09:35:10,668 writing requirements to /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/requires.txt 2026-04-05T09:35:10,670 writing top-level names to /tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/top_level.txt 2026-04-05T09:35:10,671 writing manifest file '/tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:10,712 reading manifest file '/tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:10,714 reading manifest template 'MANIFEST.in' 2026-04-05T09:35:10,715 no previously-included directories found matching 'tests' 2026-04-05T09:35:10,716 no previously-included directories found matching 'dist' 2026-04-05T09:35:10,717 warning: no previously-included files found matching '.*' 2026-04-05T09:35:11,047 warning: no files found matching 'LICENSE' 2026-04-05T09:35:11,048 warning: no files found matching 'environment.yml' 2026-04-05T09:35:11,049 warning: no files found matching 'requirements.txt' 2026-04-05T09:35:11,061 writing manifest file '/tmp/pip-modern-metadata-1xrgeig8/eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:11,063 creating '/tmp/pip-modern-metadata-1xrgeig8/efishent-0.0.12.dist-info' 2026-04-05T09:35:11,189 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T09:35:11,195 Source in /tmp/pip-wheel-iane3k3j/efishent_853044ff9a544161b13c4f50c31281f2 has version 0.0.12, which satisfies requirement efishent==0.0.12 from https://files.pythonhosted.org/packages/19/17/2d553c1a5b282e2c54bc903926096bb4de589fc2038af5a1a9bb66a0065f/efishent-0.0.12.tar.gz 2026-04-05T09:35:11,196 Removed efishent==0.0.12 from https://files.pythonhosted.org/packages/19/17/2d553c1a5b282e2c54bc903926096bb4de589fc2038af5a1a9bb66a0065f/efishent-0.0.12.tar.gz from build tracker '/tmp/pip-build-tracker-86d8o2yq' 2026-04-05T09:35:11,205 Created temporary directory: /tmp/pip-unpack-jeo7xitu 2026-04-05T09:35:11,206 Building wheels for collected packages: efishent 2026-04-05T09:35:11,210 Created temporary directory: /tmp/pip-wheel-zxs6580y 2026-04-05T09:35:11,211 Destination directory: /tmp/pip-wheel-zxs6580y 2026-04-05T09:35:11,213 Building wheel for efishent (pyproject.toml): started 2026-04-05T09:35:11,214 Running command Building wheel for efishent (pyproject.toml) 2026-04-05T09:35:11,772 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-04-05T09:35:11,772 corresp(dist, value, root_dir) 2026-04-05T09:35:11,773 /tmp/pip-build-env-sldsdhbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-05T09:35:11,773 corresp(dist, value, root_dir) 2026-04-05T09:35:11,845 running bdist_wheel 2026-04-05T09:35:11,862 running build 2026-04-05T09:35:11,862 running build_py 2026-04-05T09:35:11,869 creating build/lib/eFISHent 2026-04-05T09:35:11,871 copying eFISHent/transcriptome_filter.py -> build/lib/eFISHent 2026-04-05T09:35:11,874 copying eFISHent/alignment.py -> build/lib/eFISHent 2026-04-05T09:35:11,876 copying eFISHent/__init__.py -> build/lib/eFISHent 2026-04-05T09:35:11,878 copying eFISHent/cleanup.py -> build/lib/eFISHent 2026-04-05T09:35:11,881 copying eFISHent/util.py -> build/lib/eFISHent 2026-04-05T09:35:11,883 copying eFISHent/indexing.py -> build/lib/eFISHent 2026-04-05T09:35:11,885 copying eFISHent/constants.py -> build/lib/eFISHent 2026-04-05T09:35:11,887 copying eFISHent/kmers.py -> build/lib/eFISHent 2026-04-05T09:35:11,889 copying eFISHent/config.py -> build/lib/eFISHent 2026-04-05T09:35:11,892 copying eFISHent/basic_filtering.py -> build/lib/eFISHent 2026-04-05T09:35:11,894 copying eFISHent/presets.py -> build/lib/eFISHent 2026-04-05T09:35:11,896 copying eFISHent/secondary_structure.py -> build/lib/eFISHent 2026-04-05T09:35:11,898 copying eFISHent/cli.py -> build/lib/eFISHent 2026-04-05T09:35:11,901 copying eFISHent/optimization.py -> build/lib/eFISHent 2026-04-05T09:35:11,903 copying eFISHent/rdna_filter.py -> build/lib/eFISHent 2026-04-05T09:35:11,905 copying eFISHent/console.py -> build/lib/eFISHent 2026-04-05T09:35:11,908 copying eFISHent/gene_annotation.py -> build/lib/eFISHent 2026-04-05T09:35:11,910 copying eFISHent/prepare_sequence.py -> build/lib/eFISHent 2026-04-05T09:35:11,913 copying eFISHent/analyze.py -> build/lib/eFISHent 2026-04-05T09:35:11,915 copying eFISHent/generate_probes.py -> build/lib/eFISHent 2026-04-05T09:35:11,918 copying eFISHent/__main__.py -> build/lib/eFISHent 2026-04-05T09:35:11,921 running egg_info 2026-04-05T09:35:11,931 writing eFISHent.egg-info/PKG-INFO 2026-04-05T09:35:11,934 writing dependency_links to eFISHent.egg-info/dependency_links.txt 2026-04-05T09:35:11,936 writing entry points to eFISHent.egg-info/entry_points.txt 2026-04-05T09:35:11,937 writing requirements to eFISHent.egg-info/requires.txt 2026-04-05T09:35:11,938 writing top-level names to eFISHent.egg-info/top_level.txt 2026-04-05T09:35:11,971 reading manifest file 'eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:11,986 reading manifest template 'MANIFEST.in' 2026-04-05T09:35:11,987 no previously-included directories found matching 'tests' 2026-04-05T09:35:11,988 no previously-included directories found matching 'dist' 2026-04-05T09:35:11,989 warning: no previously-included files found matching '.*' 2026-04-05T09:35:12,305 warning: no files found matching 'LICENSE' 2026-04-05T09:35:12,305 warning: no files found matching 'environment.yml' 2026-04-05T09:35:12,306 warning: no files found matching 'requirements.txt' 2026-04-05T09:35:12,322 writing manifest file 'eFISHent.egg-info/SOURCES.txt' 2026-04-05T09:35:12,355 copying eFISHent/Fold_linux -> build/lib/eFISHent 2026-04-05T09:35:12,378 copying eFISHent/Fold_osx -> build/lib/eFISHent 2026-04-05T09:35:12,404 copying eFISHent/luigi.cfg -> build/lib/eFISHent 2026-04-05T09:35:12,406 creating build/lib/eFISHent/data_tables 2026-04-05T09:35:12,407 copying eFISHent/data_tables/rna.coaxstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,410 copying eFISHent/data_tables/b-test.miscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,412 copying eFISHent/data_tables/dna.tstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,414 copying eFISHent/data_tables/rna.tstacki23.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,417 copying eFISHent/data_tables/dynalignmiscloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,419 copying eFISHent/data_tables/dna.int22.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,423 copying eFISHent/data_tables/dna.stack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,425 copying eFISHent/data_tables/stack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,427 copying eFISHent/data_tables/int11.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,430 copying eFISHent/data_tables/b-test.tstackcoax.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,432 copying eFISHent/data_tables/dnatloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,435 copying eFISHent/data_tables/dna.hexaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,437 copying eFISHent/data_tables/b-test.triloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,439 copying eFISHent/data_tables/coaxstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,441 copying eFISHent/data_tables/dna.tstacki.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,444 copying eFISHent/data_tables/b-test.int11.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,446 copying eFISHent/data_tables/dna.coaxstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,449 copying eFISHent/data_tables/dnatriloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,451 copying eFISHent/data_tables/dnaint21.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,454 copying eFISHent/data_tables/m6A.stack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,457 copying eFISHent/data_tables/b-test.coaxial.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,459 copying eFISHent/data_tables/pseudconst.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,461 copying eFISHent/data_tables/rna.triloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,463 copying eFISHent/data_tables/dna.triloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,466 copying eFISHent/data_tables/rna.coaxial.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,468 copying eFISHent/data_tables/dnaint11.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,470 copying eFISHent/data_tables/average_ensemble_defect.model -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,477 copying eFISHent/data_tables/rna.tstackcoax.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,479 copying eFISHent/data_tables/dnahexaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,481 copying eFISHent/data_tables/std_ensemble_defect.model -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,484 copying eFISHent/data_tables/description.txt -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,486 copying eFISHent/data_tables/hexaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,488 copying eFISHent/data_tables/dna.tstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,490 copying eFISHent/data_tables/b-test.tstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,492 copying eFISHent/data_tables/dnahexaloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,494 copying eFISHent/data_tables/dna.tstackm.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,497 copying eFISHent/data_tables/m6A.tstackm.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,499 copying eFISHent/data_tables/helix.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,501 copying eFISHent/data_tables/miscloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,503 copying eFISHent/data_tables/dna.dangle.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,505 copying eFISHent/data_tables/m6A.hexaloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,507 copying eFISHent/data_tables/rna.cov.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,532 copying eFISHent/data_tables/tstackm.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,534 copying eFISHent/data_tables/m6A.tstackcoax.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,537 copying eFISHent/data_tables/dna.int21.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,540 copying eFISHent/data_tables/int21.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,543 copying eFISHent/data_tables/stack.ds -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,545 copying eFISHent/data_tables/dnatriloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,547 copying eFISHent/data_tables/m6A.tstacki.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,549 copying eFISHent/data_tables/stackdr.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,552 copying eFISHent/data_tables/dna.loop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,554 copying eFISHent/data_tables/dnaint11.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,557 copying eFISHent/data_tables/dnacoaxial.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,559 copying eFISHent/data_tables/m6A.loop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,562 copying eFISHent/data_tables/tstackh.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,564 copying eFISHent/data_tables/b-test.specification.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,566 copying eFISHent/data_tables/dna.tloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,569 copying eFISHent/data_tables/helixdr.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,571 copying eFISHent/data_tables/b-test.hexaloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,573 copying eFISHent/data_tables/dnatstacki23.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,575 copying eFISHent/data_tables/stackdr.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,577 copying eFISHent/data_tables/autodetect.txt -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,579 copying eFISHent/data_tables/rna.coaxial.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,582 copying eFISHent/data_tables/dnatstackm.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,584 copying eFISHent/data_tables/m6A.tstackh.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,587 copying eFISHent/data_tables/design.RNA.Loops.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,590 copying eFISHent/data_tables/dnadangle.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,593 copying eFISHent/data_tables/tstacki23.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,595 copying eFISHent/data_tables/b-test.tstackh.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,598 copying eFISHent/data_tables/rna.dangle.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,600 copying eFISHent/data_tables/dna.tstackcoax.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,603 copying eFISHent/data_tables/tloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,605 copying eFISHent/data_tables/dnamiscloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,607 copying eFISHent/data_tables/loop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,610 copying eFISHent/data_tables/tstacki.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,612 copying eFISHent/data_tables/dnadynalignmiscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,615 copying eFISHent/data_tables/b-test.tstacki.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,617 copying eFISHent/data_tables/dnatstack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,619 copying eFISHent/data_tables/dangle.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,622 copying eFISHent/data_tables/dna.tstackm.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,625 copying eFISHent/data_tables/b-test.tstackm.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,627 copying eFISHent/data_tables/coaxial.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,630 copying eFISHent/data_tables/dna.coaxial.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,632 copying eFISHent/data_tables/rna.dangle.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,635 copying eFISHent/data_tables/rna.hexaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,637 copying eFISHent/data_tables/b-test.coaxstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,640 copying eFISHent/data_tables/b-test.tstacki23.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,643 copying eFISHent/data_tables/m6A.miscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,645 copying eFISHent/data_tables/m6A.int22.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,651 copying eFISHent/data_tables/int22-exp.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,655 copying eFISHent/data_tables/dna.tloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,657 copying eFISHent/data_tables/b-test.stack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,660 copying eFISHent/data_tables/m6A.triloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,662 copying eFISHent/data_tables/coaxstack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,665 copying eFISHent/data_tables/dnatstacki1n.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,668 copying eFISHent/data_tables/design.RNA.Helices.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,671 copying eFISHent/data_tables/design.DNA.Helices.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,675 copying eFISHent/data_tables/dna.coaxial.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,677 copying eFISHent/data_tables/dna.dynalignmiscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,680 copying eFISHent/data_tables/tstacki.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,682 copying eFISHent/data_tables/dnacoaxstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,685 copying eFISHent/data_tables/rna.loop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,687 copying eFISHent/data_tables/dna.hexaloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,690 copying eFISHent/data_tables/dnastack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,692 copying eFISHent/data_tables/dnadangle.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,695 copying eFISHent/data_tables/rna.loop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,698 copying eFISHent/data_tables/tstacki1n.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,700 copying eFISHent/data_tables/b-test.loop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,703 copying eFISHent/data_tables/dna.miscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,705 copying eFISHent/data_tables/dna.dangle.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,707 copying eFISHent/data_tables/dna.tstacki1n.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,710 copying eFISHent/data_tables/dna.tstacki23.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,712 copying eFISHent/data_tables/rna.specification.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,714 copying eFISHent/data_tables/m6A.coaxial.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,716 copying eFISHent/data_tables/m6A.int21.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,720 copying eFISHent/data_tables/fam_hmm_pars.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,723 copying eFISHent/data_tables/dnamiscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,725 copying eFISHent/data_tables/rna.int22.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,728 copying eFISHent/data_tables/rna.int22.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,731 copying eFISHent/data_tables/tloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,734 copying eFISHent/data_tables/dna.coaxstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,736 copying eFISHent/data_tables/dnatstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,738 copying eFISHent/data_tables/b-test.int11.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,741 copying eFISHent/data_tables/tstackh.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,743 copying eFISHent/data_tables/m6A.tstacki23.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,745 copying eFISHent/data_tables/b-test.coaxial.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,747 copying eFISHent/data_tables/dna.int22.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,750 copying eFISHent/data_tables/dna.int11.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:12,753 copying eFISHent/data_tables/rna.param_map.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,139 copying eFISHent/data_tables/dnacoaxial.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,142 copying eFISHent/data_tables/dnaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,145 copying eFISHent/data_tables/b-test.tloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,147 copying eFISHent/data_tables/rna.triloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,149 copying eFISHent/data_tables/tstackcoax.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,153 copying eFISHent/data_tables/hexaloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,155 copying eFISHent/data_tables/b-test.tstackh.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,158 copying eFISHent/data_tables/triloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,160 copying eFISHent/data_tables/m6A.coaxstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,163 copying eFISHent/data_tables/m6A.tstacki1n.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,166 copying eFISHent/data_tables/dnatstacki.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,168 copying eFISHent/data_tables/rna.cov.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,231 copying eFISHent/data_tables/dna.tstacki23.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,233 copying eFISHent/data_tables/tstackm.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,236 copying eFISHent/data_tables/rna.coaxstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,239 copying eFISHent/data_tables/dnadynalignmiscloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,241 copying eFISHent/data_tables/dna.int21.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,245 copying eFISHent/data_tables/int11.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,248 copying eFISHent/data_tables/rna.tstacki.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,250 copying eFISHent/data_tables/new_training_z_ave.scale.model -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,268 copying eFISHent/data_tables/int21.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,272 copying eFISHent/data_tables/b-test.int22.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,281 copying eFISHent/data_tables/rna.stack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,284 copying eFISHent/data_tables/dna.int11.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,286 copying eFISHent/data_tables/m6A.tloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,288 copying eFISHent/data_tables/dnatstackh.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,290 copying eFISHent/data_tables/dnatstackm.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,293 copying eFISHent/data_tables/rna.tloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,295 copying eFISHent/data_tables/dnatstackcoax.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,297 copying eFISHent/data_tables/rna.tstacki.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,299 copying eFISHent/data_tables/dna.tstacki.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,301 copying eFISHent/data_tables/b-test.tstackcoax.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,304 copying eFISHent/data_tables/rna.tstacki23.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,306 copying eFISHent/data_tables/b-test.dangle.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,309 copying eFISHent/data_tables/b-test.tstacki.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,311 copying eFISHent/data_tables/rna.stack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,313 copying eFISHent/data_tables/dnatloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,315 copying eFISHent/data_tables/rna.miscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,317 copying eFISHent/data_tables/rna.tstackh.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,319 copying eFISHent/data_tables/dnatstacki.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,322 copying eFISHent/data_tables/rna.tstacki1n.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,324 copying eFISHent/data_tables/m6A.dangle.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,326 copying eFISHent/data_tables/rna.int21.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,330 copying eFISHent/data_tables/miscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,332 copying eFISHent/data_tables/data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,339 copying eFISHent/data_tables/b-test.tstackm.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,341 copying eFISHent/data_tables/dnacoaxstack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,343 copying eFISHent/data_tables/dnaint22.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,347 copying eFISHent/data_tables/loop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,349 copying eFISHent/data_tables/int22.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,353 copying eFISHent/data_tables/b-test.dangle.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,355 copying eFISHent/data_tables/int22.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,359 copying eFISHent/data_tables/dnatstacki23.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,361 copying eFISHent/data_tables/b-test.tstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,363 copying eFISHent/data_tables/dna.tstacki1n.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,365 copying eFISHent/data_tables/rna.tstackm.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,368 copying eFISHent/data_tables/b-test.int21.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,372 copying eFISHent/data_tables/dnaint21.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,375 copying eFISHent/data_tables/dna.stack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,377 copying eFISHent/data_tables/dna.tstackh.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,379 copying eFISHent/data_tables/dnastack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,382 copying eFISHent/data_tables/dna.miscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,384 copying eFISHent/data_tables/m6A.int11.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,387 copying eFISHent/data_tables/tstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,389 copying eFISHent/data_tables/dna.dynalignmiscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,391 copying eFISHent/data_tables/b-test.dynalignmiscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,393 copying eFISHent/data_tables/triloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,395 copying eFISHent/data_tables/dna.triloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,397 copying eFISHent/data_tables/stackdr.ds -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,399 copying eFISHent/data_tables/b-test.tstacki1n.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,401 copying eFISHent/data_tables/rna.dynalignmiscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,403 copying eFISHent/data_tables/rna.tstackh.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,405 copying eFISHent/data_tables/dna.tstackh.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,407 copying eFISHent/data_tables/b-test.stack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,409 copying eFISHent/data_tables/new_training_z_std.scale.model -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,418 copying eFISHent/data_tables/b-test.miscloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,421 copying eFISHent/data_tables/b-test.tstacki1n.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,424 copying eFISHent/data_tables/tstack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,426 copying eFISHent/data_tables/m6A.tstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,428 copying eFISHent/data_tables/rna.miscloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,430 copying eFISHent/data_tables/dna.loop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,432 copying eFISHent/data_tables/rna.tstacki1n.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,434 copying eFISHent/data_tables/design.DNA.Loops.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,437 copying eFISHent/data_tables/rna.tstackcoax.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,440 copying eFISHent/data_tables/dna.specification.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,442 copying eFISHent/data_tables/tstackcoax.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,445 copying eFISHent/data_tables/rna.tloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,447 copying eFISHent/data_tables/dnatstackh.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,449 copying eFISHent/data_tables/coaxial.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,451 copying eFISHent/data_tables/rna.int21.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,454 copying eFISHent/data_tables/b-test.triloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,456 copying eFISHent/data_tables/rna.int11.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,459 copying eFISHent/data_tables/rna.hexaloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,461 copying eFISHent/data_tables/m6A.specification.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,463 copying eFISHent/data_tables/b-test.hexaloop.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,465 copying eFISHent/data_tables/stack.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,468 copying eFISHent/data_tables/dnatstackcoax.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,470 copying eFISHent/data_tables/rna.tstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,472 copying eFISHent/data_tables/tstacki23.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,474 copying eFISHent/data_tables/b-test.coaxstack.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,477 copying eFISHent/data_tables/dnatstacki1n.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,479 copying eFISHent/data_tables/rna.tstackm.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,481 copying eFISHent/data_tables/b-test.tstacki23.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,483 copying eFISHent/data_tables/rna.tstack.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,485 copying eFISHent/data_tables/dnaint22.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,489 copying eFISHent/data_tables/b-test.int21.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,493 copying eFISHent/data_tables/dangle.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,495 copying eFISHent/data_tables/b-test.tloop.dg -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,497 copying eFISHent/data_tables/rna.int11.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,500 copying eFISHent/data_tables/dnaloop.dat -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,502 copying eFISHent/data_tables/dna.tstackcoax.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,504 copying eFISHent/data_tables/tstacki1n.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,506 copying eFISHent/data_tables/b-test.int22.dh -> build/lib/eFISHent/data_tables 2026-04-05T09:35:13,525 creating build/lib/eFISHent/data 2026-04-05T09:35:13,526 copying eFISHent/data/rDNA_45S_U13369.fasta -> build/lib/eFISHent/data 2026-04-05T09:35:13,529 copying eFISHent/data/imaging_risk_rnas.fasta -> build/lib/eFISHent/data 2026-04-05T09:35:13,532 copying eFISHent/data/alpha_satellite_consensus.fasta -> build/lib/eFISHent/data 2026-04-05T09:35:13,778 installing to build/bdist.linux-armv7l/wheel 2026-04-05T09:35:13,779 running install 2026-04-05T09:35:13,801 running install_lib 2026-04-05T09:35:13,807 creating build/bdist.linux-armv7l/wheel 2026-04-05T09:35:13,809 creating build/bdist.linux-armv7l/wheel/eFISHent 2026-04-05T09:35:13,810 copying build/lib/eFISHent/transcriptome_filter.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,813 copying build/lib/eFISHent/alignment.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,816 copying build/lib/eFISHent/__init__.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,819 copying build/lib/eFISHent/cleanup.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,822 copying build/lib/eFISHent/util.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,824 copying build/lib/eFISHent/indexing.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,827 copying build/lib/eFISHent/constants.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,829 copying build/lib/eFISHent/kmers.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,832 creating build/bdist.linux-armv7l/wheel/eFISHent/data 2026-04-05T09:35:13,833 copying build/lib/eFISHent/data/rDNA_45S_U13369.fasta -> build/bdist.linux-armv7l/wheel/./eFISHent/data 2026-04-05T09:35:13,837 copying build/lib/eFISHent/data/imaging_risk_rnas.fasta -> build/bdist.linux-armv7l/wheel/./eFISHent/data 2026-04-05T09:35:13,840 copying build/lib/eFISHent/data/alpha_satellite_consensus.fasta -> build/bdist.linux-armv7l/wheel/./eFISHent/data 2026-04-05T09:35:13,842 copying build/lib/eFISHent/luigi.cfg -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,844 copying build/lib/eFISHent/config.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,847 copying build/lib/eFISHent/basic_filtering.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,850 copying build/lib/eFISHent/presets.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,852 copying build/lib/eFISHent/secondary_structure.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,854 copying build/lib/eFISHent/cli.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,857 copying build/lib/eFISHent/optimization.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,859 copying build/lib/eFISHent/rdna_filter.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,862 copying build/lib/eFISHent/Fold_osx -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,901 copying build/lib/eFISHent/Fold_linux -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,927 copying build/lib/eFISHent/console.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:13,933 creating build/bdist.linux-armv7l/wheel/eFISHent/data_tables 2026-04-05T09:35:13,934 copying build/lib/eFISHent/data_tables/rna.coaxstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,936 copying build/lib/eFISHent/data_tables/b-test.miscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,938 copying build/lib/eFISHent/data_tables/dna.tstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,940 copying build/lib/eFISHent/data_tables/rna.tstacki23.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,942 copying build/lib/eFISHent/data_tables/dynalignmiscloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,944 copying build/lib/eFISHent/data_tables/dna.int22.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,947 copying build/lib/eFISHent/data_tables/dna.stack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,948 copying build/lib/eFISHent/data_tables/stack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,950 copying build/lib/eFISHent/data_tables/int11.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,953 copying build/lib/eFISHent/data_tables/b-test.tstackcoax.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,955 copying build/lib/eFISHent/data_tables/dnatloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,957 copying build/lib/eFISHent/data_tables/dna.hexaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,958 copying build/lib/eFISHent/data_tables/b-test.triloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,960 copying build/lib/eFISHent/data_tables/coaxstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,962 copying build/lib/eFISHent/data_tables/dna.tstacki.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,964 copying build/lib/eFISHent/data_tables/b-test.int11.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,967 copying build/lib/eFISHent/data_tables/dna.coaxstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,969 copying build/lib/eFISHent/data_tables/dnatriloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,971 copying build/lib/eFISHent/data_tables/dnaint21.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,974 copying build/lib/eFISHent/data_tables/m6A.stack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,976 copying build/lib/eFISHent/data_tables/b-test.coaxial.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,978 copying build/lib/eFISHent/data_tables/pseudconst.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,980 copying build/lib/eFISHent/data_tables/rna.triloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,981 copying build/lib/eFISHent/data_tables/dna.triloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,983 copying build/lib/eFISHent/data_tables/rna.coaxial.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,985 copying build/lib/eFISHent/data_tables/dnaint11.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,987 copying build/lib/eFISHent/data_tables/average_ensemble_defect.model -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,992 copying build/lib/eFISHent/data_tables/rna.tstackcoax.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,994 copying build/lib/eFISHent/data_tables/dnahexaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,995 copying build/lib/eFISHent/data_tables/std_ensemble_defect.model -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:13,998 copying build/lib/eFISHent/data_tables/description.txt -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,000 copying build/lib/eFISHent/data_tables/hexaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,002 copying build/lib/eFISHent/data_tables/dna.tstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,004 copying build/lib/eFISHent/data_tables/b-test.tstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,005 copying build/lib/eFISHent/data_tables/dnahexaloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,007 copying build/lib/eFISHent/data_tables/dna.tstackm.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,009 copying build/lib/eFISHent/data_tables/m6A.tstackm.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,011 copying build/lib/eFISHent/data_tables/helix.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,013 copying build/lib/eFISHent/data_tables/miscloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,014 copying build/lib/eFISHent/data_tables/dna.dangle.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,017 copying build/lib/eFISHent/data_tables/m6A.hexaloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,019 copying build/lib/eFISHent/data_tables/rna.cov.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,066 copying build/lib/eFISHent/data_tables/tstackm.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,069 copying build/lib/eFISHent/data_tables/m6A.tstackcoax.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,070 copying build/lib/eFISHent/data_tables/dna.int21.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,073 copying build/lib/eFISHent/data_tables/int21.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,076 copying build/lib/eFISHent/data_tables/stack.ds -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,078 copying build/lib/eFISHent/data_tables/dnatriloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,080 copying build/lib/eFISHent/data_tables/m6A.tstacki.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,082 copying build/lib/eFISHent/data_tables/stackdr.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,085 copying build/lib/eFISHent/data_tables/dna.loop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,087 copying build/lib/eFISHent/data_tables/dnaint11.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,089 copying build/lib/eFISHent/data_tables/dnacoaxial.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,091 copying build/lib/eFISHent/data_tables/m6A.loop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,093 copying build/lib/eFISHent/data_tables/tstackh.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,095 copying build/lib/eFISHent/data_tables/b-test.specification.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,097 copying build/lib/eFISHent/data_tables/dna.tloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,099 copying build/lib/eFISHent/data_tables/helixdr.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,100 copying build/lib/eFISHent/data_tables/b-test.hexaloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,102 copying build/lib/eFISHent/data_tables/dnatstacki23.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,104 copying build/lib/eFISHent/data_tables/stackdr.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,106 copying build/lib/eFISHent/data_tables/autodetect.txt -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,108 copying build/lib/eFISHent/data_tables/rna.coaxial.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,110 copying build/lib/eFISHent/data_tables/dnatstackm.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,112 copying build/lib/eFISHent/data_tables/m6A.tstackh.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,114 copying build/lib/eFISHent/data_tables/design.RNA.Loops.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,117 copying build/lib/eFISHent/data_tables/dnadangle.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,119 copying build/lib/eFISHent/data_tables/tstacki23.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,121 copying build/lib/eFISHent/data_tables/b-test.tstackh.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,123 copying build/lib/eFISHent/data_tables/rna.dangle.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,125 copying build/lib/eFISHent/data_tables/dna.tstackcoax.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,127 copying build/lib/eFISHent/data_tables/tloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,129 copying build/lib/eFISHent/data_tables/dnamiscloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,131 copying build/lib/eFISHent/data_tables/loop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,133 copying build/lib/eFISHent/data_tables/tstacki.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,135 copying build/lib/eFISHent/data_tables/dnadynalignmiscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,137 copying build/lib/eFISHent/data_tables/b-test.tstacki.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,139 copying build/lib/eFISHent/data_tables/dnatstack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,141 copying build/lib/eFISHent/data_tables/dangle.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,144 copying build/lib/eFISHent/data_tables/dna.tstackm.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,146 copying build/lib/eFISHent/data_tables/b-test.tstackm.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,148 copying build/lib/eFISHent/data_tables/coaxial.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,150 copying build/lib/eFISHent/data_tables/dna.coaxial.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,152 copying build/lib/eFISHent/data_tables/rna.dangle.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,154 copying build/lib/eFISHent/data_tables/rna.hexaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,156 copying build/lib/eFISHent/data_tables/b-test.coaxstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,158 copying build/lib/eFISHent/data_tables/b-test.tstacki23.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,160 copying build/lib/eFISHent/data_tables/m6A.miscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,162 copying build/lib/eFISHent/data_tables/m6A.int22.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,168 copying build/lib/eFISHent/data_tables/int22-exp.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,171 copying build/lib/eFISHent/data_tables/dna.tloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,173 copying build/lib/eFISHent/data_tables/b-test.stack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,175 copying build/lib/eFISHent/data_tables/m6A.triloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,176 copying build/lib/eFISHent/data_tables/coaxstack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,178 copying build/lib/eFISHent/data_tables/dnatstacki1n.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,180 copying build/lib/eFISHent/data_tables/design.RNA.Helices.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,183 copying build/lib/eFISHent/data_tables/design.DNA.Helices.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,186 copying build/lib/eFISHent/data_tables/dna.coaxial.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,188 copying build/lib/eFISHent/data_tables/dna.dynalignmiscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,190 copying build/lib/eFISHent/data_tables/tstacki.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,192 copying build/lib/eFISHent/data_tables/dnacoaxstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,194 copying build/lib/eFISHent/data_tables/rna.loop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,196 copying build/lib/eFISHent/data_tables/dna.hexaloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,198 copying build/lib/eFISHent/data_tables/dnastack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,200 copying build/lib/eFISHent/data_tables/dnadangle.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,202 copying build/lib/eFISHent/data_tables/rna.loop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,204 copying build/lib/eFISHent/data_tables/tstacki1n.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,206 copying build/lib/eFISHent/data_tables/b-test.loop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,208 copying build/lib/eFISHent/data_tables/dna.miscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,210 copying build/lib/eFISHent/data_tables/dna.dangle.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,212 copying build/lib/eFISHent/data_tables/dna.tstacki1n.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,214 copying build/lib/eFISHent/data_tables/dna.tstacki23.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,216 copying build/lib/eFISHent/data_tables/rna.specification.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,218 copying build/lib/eFISHent/data_tables/m6A.coaxial.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,220 copying build/lib/eFISHent/data_tables/m6A.int21.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,223 copying build/lib/eFISHent/data_tables/fam_hmm_pars.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,225 copying build/lib/eFISHent/data_tables/dnamiscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,227 copying build/lib/eFISHent/data_tables/rna.int22.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,231 copying build/lib/eFISHent/data_tables/rna.int22.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,234 copying build/lib/eFISHent/data_tables/tloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,236 copying build/lib/eFISHent/data_tables/dna.coaxstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,237 copying build/lib/eFISHent/data_tables/dnatstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,239 copying build/lib/eFISHent/data_tables/b-test.int11.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,242 copying build/lib/eFISHent/data_tables/tstackh.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,244 copying build/lib/eFISHent/data_tables/m6A.tstacki23.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,246 copying build/lib/eFISHent/data_tables/b-test.coaxial.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,248 copying build/lib/eFISHent/data_tables/dna.int22.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,251 copying build/lib/eFISHent/data_tables/dna.int11.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,253 copying build/lib/eFISHent/data_tables/rna.param_map.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,379 copying build/lib/eFISHent/data_tables/dnacoaxial.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,381 copying build/lib/eFISHent/data_tables/dnaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,383 copying build/lib/eFISHent/data_tables/b-test.tloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,385 copying build/lib/eFISHent/data_tables/rna.triloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,386 copying build/lib/eFISHent/data_tables/tstackcoax.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,389 copying build/lib/eFISHent/data_tables/hexaloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,390 copying build/lib/eFISHent/data_tables/b-test.tstackh.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,392 copying build/lib/eFISHent/data_tables/triloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,394 copying build/lib/eFISHent/data_tables/m6A.coaxstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,396 copying build/lib/eFISHent/data_tables/m6A.tstacki1n.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,398 copying build/lib/eFISHent/data_tables/dnatstacki.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,409 copying build/lib/eFISHent/data_tables/rna.cov.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,432 copying build/lib/eFISHent/data_tables/dna.tstacki23.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,434 copying build/lib/eFISHent/data_tables/tstackm.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,437 copying build/lib/eFISHent/data_tables/rna.coaxstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,439 copying build/lib/eFISHent/data_tables/dnadynalignmiscloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,441 copying build/lib/eFISHent/data_tables/dna.int21.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,444 copying build/lib/eFISHent/data_tables/int11.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,447 copying build/lib/eFISHent/data_tables/rna.tstacki.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,450 copying build/lib/eFISHent/data_tables/new_training_z_ave.scale.model -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,462 copying build/lib/eFISHent/data_tables/int21.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,466 copying build/lib/eFISHent/data_tables/b-test.int22.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,474 copying build/lib/eFISHent/data_tables/rna.stack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,476 copying build/lib/eFISHent/data_tables/dna.int11.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,478 copying build/lib/eFISHent/data_tables/m6A.tloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,480 copying build/lib/eFISHent/data_tables/dnatstackh.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,482 copying build/lib/eFISHent/data_tables/dnatstackm.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,484 copying build/lib/eFISHent/data_tables/rna.tloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,485 copying build/lib/eFISHent/data_tables/dnatstackcoax.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,487 copying build/lib/eFISHent/data_tables/rna.tstacki.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,489 copying build/lib/eFISHent/data_tables/dna.tstacki.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,491 copying build/lib/eFISHent/data_tables/b-test.tstackcoax.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,494 copying build/lib/eFISHent/data_tables/rna.tstacki23.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,496 copying build/lib/eFISHent/data_tables/b-test.dangle.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,498 copying build/lib/eFISHent/data_tables/b-test.tstacki.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,500 copying build/lib/eFISHent/data_tables/rna.stack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,502 copying build/lib/eFISHent/data_tables/dnatloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,504 copying build/lib/eFISHent/data_tables/rna.miscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,505 copying build/lib/eFISHent/data_tables/rna.tstackh.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,507 copying build/lib/eFISHent/data_tables/dnatstacki.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,509 copying build/lib/eFISHent/data_tables/rna.tstacki1n.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,511 copying build/lib/eFISHent/data_tables/m6A.dangle.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,513 copying build/lib/eFISHent/data_tables/rna.int21.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,516 copying build/lib/eFISHent/data_tables/miscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,518 copying build/lib/eFISHent/data_tables/data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,524 copying build/lib/eFISHent/data_tables/b-test.tstackm.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,526 copying build/lib/eFISHent/data_tables/dnacoaxstack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,528 copying build/lib/eFISHent/data_tables/dnaint22.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,531 copying build/lib/eFISHent/data_tables/loop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,533 copying build/lib/eFISHent/data_tables/int22.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,537 copying build/lib/eFISHent/data_tables/b-test.dangle.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,539 copying build/lib/eFISHent/data_tables/int22.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,542 copying build/lib/eFISHent/data_tables/dnatstacki23.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,544 copying build/lib/eFISHent/data_tables/b-test.tstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,546 copying build/lib/eFISHent/data_tables/dna.tstacki1n.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,548 copying build/lib/eFISHent/data_tables/rna.tstackm.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,550 copying build/lib/eFISHent/data_tables/b-test.int21.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,553 copying build/lib/eFISHent/data_tables/dnaint21.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,556 copying build/lib/eFISHent/data_tables/dna.stack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,558 copying build/lib/eFISHent/data_tables/dna.tstackh.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,559 copying build/lib/eFISHent/data_tables/dnastack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,562 copying build/lib/eFISHent/data_tables/dna.miscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,564 copying build/lib/eFISHent/data_tables/m6A.int11.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,566 copying build/lib/eFISHent/data_tables/tstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,569 copying build/lib/eFISHent/data_tables/dna.dynalignmiscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,571 copying build/lib/eFISHent/data_tables/b-test.dynalignmiscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,573 copying build/lib/eFISHent/data_tables/triloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,575 copying build/lib/eFISHent/data_tables/dna.triloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,576 copying build/lib/eFISHent/data_tables/stackdr.ds -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,579 copying build/lib/eFISHent/data_tables/b-test.tstacki1n.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,581 copying build/lib/eFISHent/data_tables/rna.dynalignmiscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,583 copying build/lib/eFISHent/data_tables/rna.tstackh.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,585 copying build/lib/eFISHent/data_tables/dna.tstackh.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,587 copying build/lib/eFISHent/data_tables/b-test.stack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,589 copying build/lib/eFISHent/data_tables/new_training_z_std.scale.model -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,597 copying build/lib/eFISHent/data_tables/b-test.miscloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,599 copying build/lib/eFISHent/data_tables/b-test.tstacki1n.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,601 copying build/lib/eFISHent/data_tables/tstack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,603 copying build/lib/eFISHent/data_tables/m6A.tstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,604 copying build/lib/eFISHent/data_tables/rna.miscloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,606 copying build/lib/eFISHent/data_tables/dna.loop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,608 copying build/lib/eFISHent/data_tables/rna.tstacki1n.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,610 copying build/lib/eFISHent/data_tables/design.DNA.Loops.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,612 copying build/lib/eFISHent/data_tables/rna.tstackcoax.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,614 copying build/lib/eFISHent/data_tables/dna.specification.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,616 copying build/lib/eFISHent/data_tables/tstackcoax.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,619 copying build/lib/eFISHent/data_tables/rna.tloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,621 copying build/lib/eFISHent/data_tables/dnatstackh.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,623 copying build/lib/eFISHent/data_tables/coaxial.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,626 copying build/lib/eFISHent/data_tables/rna.int21.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,630 copying build/lib/eFISHent/data_tables/b-test.triloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,632 copying build/lib/eFISHent/data_tables/rna.int11.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,635 copying build/lib/eFISHent/data_tables/rna.hexaloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,637 copying build/lib/eFISHent/data_tables/m6A.specification.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,639 copying build/lib/eFISHent/data_tables/b-test.hexaloop.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,642 copying build/lib/eFISHent/data_tables/stack.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,644 copying build/lib/eFISHent/data_tables/dnatstackcoax.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,647 copying build/lib/eFISHent/data_tables/rna.tstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,649 copying build/lib/eFISHent/data_tables/tstacki23.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,652 copying build/lib/eFISHent/data_tables/b-test.coaxstack.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,654 copying build/lib/eFISHent/data_tables/dnatstacki1n.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,657 copying build/lib/eFISHent/data_tables/rna.tstackm.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,660 copying build/lib/eFISHent/data_tables/b-test.tstacki23.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,662 copying build/lib/eFISHent/data_tables/rna.tstack.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,664 copying build/lib/eFISHent/data_tables/dnaint22.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,668 copying build/lib/eFISHent/data_tables/b-test.int21.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,674 copying build/lib/eFISHent/data_tables/dangle.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,676 copying build/lib/eFISHent/data_tables/b-test.tloop.dg -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,678 copying build/lib/eFISHent/data_tables/rna.int11.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,681 copying build/lib/eFISHent/data_tables/dnaloop.dat -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,683 copying build/lib/eFISHent/data_tables/dna.tstackcoax.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,686 copying build/lib/eFISHent/data_tables/tstacki1n.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,689 copying build/lib/eFISHent/data_tables/b-test.int22.dh -> build/bdist.linux-armv7l/wheel/./eFISHent/data_tables 2026-04-05T09:35:14,696 copying build/lib/eFISHent/gene_annotation.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:14,700 copying build/lib/eFISHent/prepare_sequence.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:14,703 copying build/lib/eFISHent/analyze.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:14,706 copying build/lib/eFISHent/generate_probes.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:14,709 copying build/lib/eFISHent/__main__.py -> build/bdist.linux-armv7l/wheel/./eFISHent 2026-04-05T09:35:14,711 running install_egg_info 2026-04-05T09:35:14,718 Copying eFISHent.egg-info to build/bdist.linux-armv7l/wheel/./eFISHent-0.0.12-py3.11.egg-info 2026-04-05T09:35:14,736 running install_scripts 2026-04-05T09:35:14,748 creating build/bdist.linux-armv7l/wheel/efishent-0.0.12.dist-info/WHEEL 2026-04-05T09:35:14,752 creating '/tmp/pip-wheel-zxs6580y/.tmp-2wwj5kvn/efishent-0.0.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T09:35:15,043 adding 'eFISHent/Fold_linux' 2026-04-05T09:35:15,321 adding 'eFISHent/Fold_osx' 2026-04-05T09:35:15,333 adding 'eFISHent/__init__.py' 2026-04-05T09:35:15,334 adding 'eFISHent/__main__.py' 2026-04-05T09:35:15,337 adding 'eFISHent/alignment.py' 2026-04-05T09:35:15,340 adding 'eFISHent/analyze.py' 2026-04-05T09:35:15,341 adding 'eFISHent/basic_filtering.py' 2026-04-05T09:35:15,345 adding 'eFISHent/cleanup.py' 2026-04-05T09:35:15,350 adding 'eFISHent/cli.py' 2026-04-05T09:35:15,352 adding 'eFISHent/config.py' 2026-04-05T09:35:15,356 adding 'eFISHent/console.py' 2026-04-05T09:35:15,357 adding 'eFISHent/constants.py' 2026-04-05T09:35:15,359 adding 'eFISHent/gene_annotation.py' 2026-04-05T09:35:15,361 adding 'eFISHent/generate_probes.py' 2026-04-05T09:35:15,362 adding 'eFISHent/indexing.py' 2026-04-05T09:35:15,364 adding 'eFISHent/kmers.py' 2026-04-05T09:35:15,365 adding 'eFISHent/luigi.cfg' 2026-04-05T09:35:15,368 adding 'eFISHent/optimization.py' 2026-04-05T09:35:15,370 adding 'eFISHent/prepare_sequence.py' 2026-04-05T09:35:15,371 adding 'eFISHent/presets.py' 2026-04-05T09:35:15,373 adding 'eFISHent/rdna_filter.py' 2026-04-05T09:35:15,374 adding 'eFISHent/secondary_structure.py' 2026-04-05T09:35:15,376 adding 'eFISHent/transcriptome_filter.py' 2026-04-05T09:35:15,378 adding 'eFISHent/util.py' 2026-04-05T09:35:15,380 adding 'eFISHent/data/alpha_satellite_consensus.fasta' 2026-04-05T09:35:15,382 adding 'eFISHent/data/imaging_risk_rnas.fasta' 2026-04-05T09:35:15,402 adding 'eFISHent/data/rDNA_45S_U13369.fasta' 2026-04-05T09:35:15,408 adding 'eFISHent/data_tables/autodetect.txt' 2026-04-05T09:35:15,426 adding 'eFISHent/data_tables/average_ensemble_defect.model' 2026-04-05T09:35:15,428 adding 'eFISHent/data_tables/b-test.coaxial.dg' 2026-04-05T09:35:15,430 adding 'eFISHent/data_tables/b-test.coaxial.dh' 2026-04-05T09:35:15,431 adding 'eFISHent/data_tables/b-test.coaxstack.dg' 2026-04-05T09:35:15,432 adding 'eFISHent/data_tables/b-test.coaxstack.dh' 2026-04-05T09:35:15,433 adding 'eFISHent/data_tables/b-test.dangle.dg' 2026-04-05T09:35:15,435 adding 'eFISHent/data_tables/b-test.dangle.dh' 2026-04-05T09:35:15,436 adding 'eFISHent/data_tables/b-test.dynalignmiscloop.dg' 2026-04-05T09:35:15,437 adding 'eFISHent/data_tables/b-test.hexaloop.dg' 2026-04-05T09:35:15,438 adding 'eFISHent/data_tables/b-test.hexaloop.dh' 2026-04-05T09:35:15,440 adding 'eFISHent/data_tables/b-test.int11.dg' 2026-04-05T09:35:15,441 adding 'eFISHent/data_tables/b-test.int11.dh' 2026-04-05T09:35:15,445 adding 'eFISHent/data_tables/b-test.int21.dg' 2026-04-05T09:35:15,448 adding 'eFISHent/data_tables/b-test.int21.dh' 2026-04-05T09:35:15,461 adding 'eFISHent/data_tables/b-test.int22.dg' 2026-04-05T09:35:15,477 adding 'eFISHent/data_tables/b-test.int22.dh' 2026-04-05T09:35:15,480 adding 'eFISHent/data_tables/b-test.loop.dg' 2026-04-05T09:35:15,481 adding 'eFISHent/data_tables/b-test.miscloop.dg' 2026-04-05T09:35:15,482 adding 'eFISHent/data_tables/b-test.miscloop.dh' 2026-04-05T09:35:15,483 adding 'eFISHent/data_tables/b-test.specification.dat' 2026-04-05T09:35:15,484 adding 'eFISHent/data_tables/b-test.stack.dg' 2026-04-05T09:35:15,486 adding 'eFISHent/data_tables/b-test.stack.dh' 2026-04-05T09:35:15,487 adding 'eFISHent/data_tables/b-test.tloop.dg' 2026-04-05T09:35:15,488 adding 'eFISHent/data_tables/b-test.tloop.dh' 2026-04-05T09:35:15,489 adding 'eFISHent/data_tables/b-test.triloop.dg' 2026-04-05T09:35:15,490 adding 'eFISHent/data_tables/b-test.triloop.dh' 2026-04-05T09:35:15,492 adding 'eFISHent/data_tables/b-test.tstack.dg' 2026-04-05T09:35:15,493 adding 'eFISHent/data_tables/b-test.tstack.dh' 2026-04-05T09:35:15,494 adding 'eFISHent/data_tables/b-test.tstackcoax.dg' 2026-04-05T09:35:15,496 adding 'eFISHent/data_tables/b-test.tstackcoax.dh' 2026-04-05T09:35:15,497 adding 'eFISHent/data_tables/b-test.tstackh.dg' 2026-04-05T09:35:15,498 adding 'eFISHent/data_tables/b-test.tstackh.dh' 2026-04-05T09:35:15,499 adding 'eFISHent/data_tables/b-test.tstacki.dg' 2026-04-05T09:35:15,501 adding 'eFISHent/data_tables/b-test.tstacki.dh' 2026-04-05T09:35:15,502 adding 'eFISHent/data_tables/b-test.tstacki1n.dg' 2026-04-05T09:35:15,503 adding 'eFISHent/data_tables/b-test.tstacki1n.dh' 2026-04-05T09:35:15,504 adding 'eFISHent/data_tables/b-test.tstacki23.dg' 2026-04-05T09:35:15,505 adding 'eFISHent/data_tables/b-test.tstacki23.dh' 2026-04-05T09:35:15,507 adding 'eFISHent/data_tables/b-test.tstackm.dg' 2026-04-05T09:35:15,508 adding 'eFISHent/data_tables/b-test.tstackm.dh' 2026-04-05T09:35:15,509 adding 'eFISHent/data_tables/coaxial.dat' 2026-04-05T09:35:15,511 adding 'eFISHent/data_tables/coaxial.dh' 2026-04-05T09:35:15,512 adding 'eFISHent/data_tables/coaxstack.dat' 2026-04-05T09:35:15,513 adding 'eFISHent/data_tables/coaxstack.dh' 2026-04-05T09:35:15,515 adding 'eFISHent/data_tables/dangle.dat' 2026-04-05T09:35:15,516 adding 'eFISHent/data_tables/dangle.dh' 2026-04-05T09:35:15,571 adding 'eFISHent/data_tables/data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model' 2026-04-05T09:35:15,574 adding 'eFISHent/data_tables/description.txt' 2026-04-05T09:35:15,585 adding 'eFISHent/data_tables/design.DNA.Helices.dat' 2026-04-05T09:35:15,592 adding 'eFISHent/data_tables/design.DNA.Loops.dat' 2026-04-05T09:35:15,603 adding 'eFISHent/data_tables/design.RNA.Helices.dat' 2026-04-05T09:35:15,609 adding 'eFISHent/data_tables/design.RNA.Loops.dat' 2026-04-05T09:35:15,611 adding 'eFISHent/data_tables/dna.coaxial.dg' 2026-04-05T09:35:15,612 adding 'eFISHent/data_tables/dna.coaxial.dh' 2026-04-05T09:35:15,613 adding 'eFISHent/data_tables/dna.coaxstack.dg' 2026-04-05T09:35:15,614 adding 'eFISHent/data_tables/dna.coaxstack.dh' 2026-04-05T09:35:15,615 adding 'eFISHent/data_tables/dna.dangle.dg' 2026-04-05T09:35:15,616 adding 'eFISHent/data_tables/dna.dangle.dh' 2026-04-05T09:35:15,618 adding 'eFISHent/data_tables/dna.dynalignmiscloop.dg' 2026-04-05T09:35:15,619 adding 'eFISHent/data_tables/dna.dynalignmiscloop.dh' 2026-04-05T09:35:15,620 adding 'eFISHent/data_tables/dna.hexaloop.dg' 2026-04-05T09:35:15,621 adding 'eFISHent/data_tables/dna.hexaloop.dh' 2026-04-05T09:35:15,622 adding 'eFISHent/data_tables/dna.int11.dg' 2026-04-05T09:35:15,624 adding 'eFISHent/data_tables/dna.int11.dh' 2026-04-05T09:35:15,627 adding 'eFISHent/data_tables/dna.int21.dg' 2026-04-05T09:35:15,629 adding 'eFISHent/data_tables/dna.int21.dh' 2026-04-05T09:35:15,633 adding 'eFISHent/data_tables/dna.int22.dg' 2026-04-05T09:35:15,637 adding 'eFISHent/data_tables/dna.int22.dh' 2026-04-05T09:35:15,638 adding 'eFISHent/data_tables/dna.loop.dg' 2026-04-05T09:35:15,639 adding 'eFISHent/data_tables/dna.loop.dh' 2026-04-05T09:35:15,640 adding 'eFISHent/data_tables/dna.miscloop.dg' 2026-04-05T09:35:15,642 adding 'eFISHent/data_tables/dna.miscloop.dh' 2026-04-05T09:35:15,643 adding 'eFISHent/data_tables/dna.specification.dat' 2026-04-05T09:35:15,644 adding 'eFISHent/data_tables/dna.stack.dg' 2026-04-05T09:35:15,645 adding 'eFISHent/data_tables/dna.stack.dh' 2026-04-05T09:35:15,646 adding 'eFISHent/data_tables/dna.tloop.dg' 2026-04-05T09:35:15,648 adding 'eFISHent/data_tables/dna.tloop.dh' 2026-04-05T09:35:15,649 adding 'eFISHent/data_tables/dna.triloop.dg' 2026-04-05T09:35:15,650 adding 'eFISHent/data_tables/dna.triloop.dh' 2026-04-05T09:35:15,651 adding 'eFISHent/data_tables/dna.tstack.dg' 2026-04-05T09:35:15,652 adding 'eFISHent/data_tables/dna.tstack.dh' 2026-04-05T09:35:15,654 adding 'eFISHent/data_tables/dna.tstackcoax.dg' 2026-04-05T09:35:15,655 adding 'eFISHent/data_tables/dna.tstackcoax.dh' 2026-04-05T09:35:15,656 adding 'eFISHent/data_tables/dna.tstackh.dg' 2026-04-05T09:35:15,657 adding 'eFISHent/data_tables/dna.tstackh.dh' 2026-04-05T09:35:15,659 adding 'eFISHent/data_tables/dna.tstacki.dg' 2026-04-05T09:35:15,660 adding 'eFISHent/data_tables/dna.tstacki.dh' 2026-04-05T09:35:15,661 adding 'eFISHent/data_tables/dna.tstacki1n.dg' 2026-04-05T09:35:15,662 adding 'eFISHent/data_tables/dna.tstacki1n.dh' 2026-04-05T09:35:15,664 adding 'eFISHent/data_tables/dna.tstacki23.dg' 2026-04-05T09:35:15,665 adding 'eFISHent/data_tables/dna.tstacki23.dh' 2026-04-05T09:35:15,666 adding 'eFISHent/data_tables/dna.tstackm.dg' 2026-04-05T09:35:15,667 adding 'eFISHent/data_tables/dna.tstackm.dh' 2026-04-05T09:35:15,669 adding 'eFISHent/data_tables/dnacoaxial.dat' 2026-04-05T09:35:15,670 adding 'eFISHent/data_tables/dnacoaxial.dh' 2026-04-05T09:35:15,671 adding 'eFISHent/data_tables/dnacoaxstack.dat' 2026-04-05T09:35:15,673 adding 'eFISHent/data_tables/dnacoaxstack.dh' 2026-04-05T09:35:15,674 adding 'eFISHent/data_tables/dnadangle.dat' 2026-04-05T09:35:15,675 adding 'eFISHent/data_tables/dnadangle.dh' 2026-04-05T09:35:15,677 adding 'eFISHent/data_tables/dnadynalignmiscloop.dat' 2026-04-05T09:35:15,678 adding 'eFISHent/data_tables/dnadynalignmiscloop.dh' 2026-04-05T09:35:15,679 adding 'eFISHent/data_tables/dnahexaloop.dat' 2026-04-05T09:35:15,680 adding 'eFISHent/data_tables/dnahexaloop.dh' 2026-04-05T09:35:15,682 adding 'eFISHent/data_tables/dnaint11.dat' 2026-04-05T09:35:15,683 adding 'eFISHent/data_tables/dnaint11.dh' 2026-04-05T09:35:15,686 adding 'eFISHent/data_tables/dnaint21.dat' 2026-04-05T09:35:15,689 adding 'eFISHent/data_tables/dnaint21.dh' 2026-04-05T09:35:15,694 adding 'eFISHent/data_tables/dnaint22.dat' 2026-04-05T09:35:15,698 adding 'eFISHent/data_tables/dnaint22.dh' 2026-04-05T09:35:15,700 adding 'eFISHent/data_tables/dnaloop.dat' 2026-04-05T09:35:15,701 adding 'eFISHent/data_tables/dnaloop.dh' 2026-04-05T09:35:15,702 adding 'eFISHent/data_tables/dnamiscloop.dat' 2026-04-05T09:35:15,703 adding 'eFISHent/data_tables/dnamiscloop.dh' 2026-04-05T09:35:15,704 adding 'eFISHent/data_tables/dnastack.dat' 2026-04-05T09:35:15,705 adding 'eFISHent/data_tables/dnastack.dh' 2026-04-05T09:35:15,707 adding 'eFISHent/data_tables/dnatloop.dat' 2026-04-05T09:35:15,708 adding 'eFISHent/data_tables/dnatloop.dh' 2026-04-05T09:35:15,709 adding 'eFISHent/data_tables/dnatriloop.dat' 2026-04-05T09:35:15,710 adding 'eFISHent/data_tables/dnatriloop.dh' 2026-04-05T09:35:15,711 adding 'eFISHent/data_tables/dnatstack.dat' 2026-04-05T09:35:15,712 adding 'eFISHent/data_tables/dnatstack.dh' 2026-04-05T09:35:15,714 adding 'eFISHent/data_tables/dnatstackcoax.dat' 2026-04-05T09:35:15,715 adding 'eFISHent/data_tables/dnatstackcoax.dh' 2026-04-05T09:35:15,717 adding 'eFISHent/data_tables/dnatstackh.dat' 2026-04-05T09:35:15,718 adding 'eFISHent/data_tables/dnatstackh.dh' 2026-04-05T09:35:15,719 adding 'eFISHent/data_tables/dnatstacki.dat' 2026-04-05T09:35:15,721 adding 'eFISHent/data_tables/dnatstacki.dh' 2026-04-05T09:35:15,722 adding 'eFISHent/data_tables/dnatstacki1n.dat' 2026-04-05T09:35:15,723 adding 'eFISHent/data_tables/dnatstacki1n.dh' 2026-04-05T09:35:15,725 adding 'eFISHent/data_tables/dnatstacki23.dat' 2026-04-05T09:35:15,726 adding 'eFISHent/data_tables/dnatstacki23.dh' 2026-04-05T09:35:15,727 adding 'eFISHent/data_tables/dnatstackm.dat' 2026-04-05T09:35:15,729 adding 'eFISHent/data_tables/dnatstackm.dh' 2026-04-05T09:35:15,730 adding 'eFISHent/data_tables/dynalignmiscloop.dat' 2026-04-05T09:35:15,731 adding 'eFISHent/data_tables/fam_hmm_pars.dat' 2026-04-05T09:35:15,733 adding 'eFISHent/data_tables/helix.dat' 2026-04-05T09:35:15,734 adding 'eFISHent/data_tables/helixdr.dat' 2026-04-05T09:35:15,735 adding 'eFISHent/data_tables/hexaloop.dat' 2026-04-05T09:35:15,736 adding 'eFISHent/data_tables/hexaloop.dh' 2026-04-05T09:35:15,737 adding 'eFISHent/data_tables/int11.dat' 2026-04-05T09:35:15,739 adding 'eFISHent/data_tables/int11.dh' 2026-04-05T09:35:15,742 adding 'eFISHent/data_tables/int21.dat' 2026-04-05T09:35:15,744 adding 'eFISHent/data_tables/int21.dh' 2026-04-05T09:35:15,747 adding 'eFISHent/data_tables/int22-exp.dh' 2026-04-05T09:35:15,754 adding 'eFISHent/data_tables/int22.dat' 2026-04-05T09:35:15,763 adding 'eFISHent/data_tables/int22.dh' 2026-04-05T09:35:15,764 adding 'eFISHent/data_tables/loop.dat' 2026-04-05T09:35:15,766 adding 'eFISHent/data_tables/loop.dh' 2026-04-05T09:35:15,767 adding 'eFISHent/data_tables/m6A.coaxial.dg' 2026-04-05T09:35:15,768 adding 'eFISHent/data_tables/m6A.coaxstack.dg' 2026-04-05T09:35:15,770 adding 'eFISHent/data_tables/m6A.dangle.dg' 2026-04-05T09:35:15,771 adding 'eFISHent/data_tables/m6A.hexaloop.dg' 2026-04-05T09:35:15,773 adding 'eFISHent/data_tables/m6A.int11.dg' 2026-04-05T09:35:15,776 adding 'eFISHent/data_tables/m6A.int21.dg' 2026-04-05T09:35:15,791 adding 'eFISHent/data_tables/m6A.int22.dg' 2026-04-05T09:35:15,794 adding 'eFISHent/data_tables/m6A.loop.dg' 2026-04-05T09:35:15,795 adding 'eFISHent/data_tables/m6A.miscloop.dg' 2026-04-05T09:35:15,796 adding 'eFISHent/data_tables/m6A.specification.dat' 2026-04-05T09:35:15,798 adding 'eFISHent/data_tables/m6A.stack.dg' 2026-04-05T09:35:15,799 adding 'eFISHent/data_tables/m6A.tloop.dg' 2026-04-05T09:35:15,800 adding 'eFISHent/data_tables/m6A.triloop.dg' 2026-04-05T09:35:15,801 adding 'eFISHent/data_tables/m6A.tstack.dg' 2026-04-05T09:35:15,803 adding 'eFISHent/data_tables/m6A.tstackcoax.dg' 2026-04-05T09:35:15,804 adding 'eFISHent/data_tables/m6A.tstackh.dg' 2026-04-05T09:35:15,805 adding 'eFISHent/data_tables/m6A.tstacki.dg' 2026-04-05T09:35:15,807 adding 'eFISHent/data_tables/m6A.tstacki1n.dg' 2026-04-05T09:35:15,808 adding 'eFISHent/data_tables/m6A.tstacki23.dg' 2026-04-05T09:35:15,809 adding 'eFISHent/data_tables/m6A.tstackm.dg' 2026-04-05T09:35:15,810 adding 'eFISHent/data_tables/miscloop.dat' 2026-04-05T09:35:15,811 adding 'eFISHent/data_tables/miscloop.dh' 2026-04-05T09:35:15,845 adding 'eFISHent/data_tables/new_training_z_ave.scale.model' 2026-04-05T09:35:15,886 adding 'eFISHent/data_tables/new_training_z_std.scale.model' 2026-04-05T09:35:15,890 adding 'eFISHent/data_tables/pseudconst.dat' 2026-04-05T09:35:15,891 adding 'eFISHent/data_tables/rna.coaxial.dg' 2026-04-05T09:35:15,892 adding 'eFISHent/data_tables/rna.coaxial.dh' 2026-04-05T09:35:15,893 adding 'eFISHent/data_tables/rna.coaxstack.dg' 2026-04-05T09:35:15,894 adding 'eFISHent/data_tables/rna.coaxstack.dh' 2026-04-05T09:35:16,198 adding 'eFISHent/data_tables/rna.cov.dg' 2026-04-05T09:35:16,592 adding 'eFISHent/data_tables/rna.cov.dh' 2026-04-05T09:35:16,602 adding 'eFISHent/data_tables/rna.dangle.dg' 2026-04-05T09:35:16,603 adding 'eFISHent/data_tables/rna.dangle.dh' 2026-04-05T09:35:16,605 adding 'eFISHent/data_tables/rna.dynalignmiscloop.dg' 2026-04-05T09:35:16,606 adding 'eFISHent/data_tables/rna.hexaloop.dg' 2026-04-05T09:35:16,607 adding 'eFISHent/data_tables/rna.hexaloop.dh' 2026-04-05T09:35:16,608 adding 'eFISHent/data_tables/rna.int11.dg' 2026-04-05T09:35:16,610 adding 'eFISHent/data_tables/rna.int11.dh' 2026-04-05T09:35:16,612 adding 'eFISHent/data_tables/rna.int21.dg' 2026-04-05T09:35:16,614 adding 'eFISHent/data_tables/rna.int21.dh' 2026-04-05T09:35:16,620 adding 'eFISHent/data_tables/rna.int22.dg' 2026-04-05T09:35:16,629 adding 'eFISHent/data_tables/rna.int22.dh' 2026-04-05T09:35:16,630 adding 'eFISHent/data_tables/rna.loop.dg' 2026-04-05T09:35:16,631 adding 'eFISHent/data_tables/rna.loop.dh' 2026-04-05T09:35:16,633 adding 'eFISHent/data_tables/rna.miscloop.dg' 2026-04-05T09:35:16,634 adding 'eFISHent/data_tables/rna.miscloop.dh' 2026-04-05T09:35:16,792 adding 'eFISHent/data_tables/rna.param_map.dg' 2026-04-05T09:35:16,842 adding 'eFISHent/data_tables/rna.specification.dat' 2026-04-05T09:35:16,843 adding 'eFISHent/data_tables/rna.stack.dg' 2026-04-05T09:35:16,844 adding 'eFISHent/data_tables/rna.stack.dh' 2026-04-05T09:35:16,845 adding 'eFISHent/data_tables/rna.tloop.dg' 2026-04-05T09:35:16,847 adding 'eFISHent/data_tables/rna.tloop.dh' 2026-04-05T09:35:16,848 adding 'eFISHent/data_tables/rna.triloop.dg' 2026-04-05T09:35:16,849 adding 'eFISHent/data_tables/rna.triloop.dh' 2026-04-05T09:35:16,850 adding 'eFISHent/data_tables/rna.tstack.dg' 2026-04-05T09:35:16,852 adding 'eFISHent/data_tables/rna.tstack.dh' 2026-04-05T09:35:16,853 adding 'eFISHent/data_tables/rna.tstackcoax.dg' 2026-04-05T09:35:16,854 adding 'eFISHent/data_tables/rna.tstackcoax.dh' 2026-04-05T09:35:16,856 adding 'eFISHent/data_tables/rna.tstackh.dg' 2026-04-05T09:35:16,857 adding 'eFISHent/data_tables/rna.tstackh.dh' 2026-04-05T09:35:16,858 adding 'eFISHent/data_tables/rna.tstacki.dg' 2026-04-05T09:35:16,860 adding 'eFISHent/data_tables/rna.tstacki.dh' 2026-04-05T09:35:16,861 adding 'eFISHent/data_tables/rna.tstacki1n.dg' 2026-04-05T09:35:16,862 adding 'eFISHent/data_tables/rna.tstacki1n.dh' 2026-04-05T09:35:16,863 adding 'eFISHent/data_tables/rna.tstacki23.dg' 2026-04-05T09:35:16,865 adding 'eFISHent/data_tables/rna.tstacki23.dh' 2026-04-05T09:35:16,866 adding 'eFISHent/data_tables/rna.tstackm.dg' 2026-04-05T09:35:16,867 adding 'eFISHent/data_tables/rna.tstackm.dh' 2026-04-05T09:35:16,868 adding 'eFISHent/data_tables/stack.dat' 2026-04-05T09:35:16,870 adding 'eFISHent/data_tables/stack.dh' 2026-04-05T09:35:16,871 adding 'eFISHent/data_tables/stack.ds' 2026-04-05T09:35:16,873 adding 'eFISHent/data_tables/stackdr.dat' 2026-04-05T09:35:16,874 adding 'eFISHent/data_tables/stackdr.dh' 2026-04-05T09:35:16,876 adding 'eFISHent/data_tables/stackdr.ds' 2026-04-05T09:35:16,880 adding 'eFISHent/data_tables/std_ensemble_defect.model' 2026-04-05T09:35:16,881 adding 'eFISHent/data_tables/tloop.dat' 2026-04-05T09:35:16,883 adding 'eFISHent/data_tables/tloop.dh' 2026-04-05T09:35:16,884 adding 'eFISHent/data_tables/triloop.dat' 2026-04-05T09:35:16,885 adding 'eFISHent/data_tables/triloop.dh' 2026-04-05T09:35:16,886 adding 'eFISHent/data_tables/tstack.dat' 2026-04-05T09:35:16,887 adding 'eFISHent/data_tables/tstack.dh' 2026-04-05T09:35:16,888 adding 'eFISHent/data_tables/tstackcoax.dat' 2026-04-05T09:35:16,889 adding 'eFISHent/data_tables/tstackcoax.dh' 2026-04-05T09:35:16,891 adding 'eFISHent/data_tables/tstackh.dat' 2026-04-05T09:35:16,892 adding 'eFISHent/data_tables/tstackh.dh' 2026-04-05T09:35:16,893 adding 'eFISHent/data_tables/tstacki.dat' 2026-04-05T09:35:16,894 adding 'eFISHent/data_tables/tstacki.dh' 2026-04-05T09:35:16,896 adding 'eFISHent/data_tables/tstacki1n.dat' 2026-04-05T09:35:16,897 adding 'eFISHent/data_tables/tstacki1n.dh' 2026-04-05T09:35:16,898 adding 'eFISHent/data_tables/tstacki23.dat' 2026-04-05T09:35:16,899 adding 'eFISHent/data_tables/tstacki23.dh' 2026-04-05T09:35:16,900 adding 'eFISHent/data_tables/tstackm.dat' 2026-04-05T09:35:16,902 adding 'eFISHent/data_tables/tstackm.dh' 2026-04-05T09:35:16,907 adding 'efishent-0.0.12.dist-info/METADATA' 2026-04-05T09:35:16,908 adding 'efishent-0.0.12.dist-info/WHEEL' 2026-04-05T09:35:16,909 adding 'efishent-0.0.12.dist-info/entry_points.txt' 2026-04-05T09:35:16,909 adding 'efishent-0.0.12.dist-info/top_level.txt' 2026-04-05T09:35:16,913 adding 'efishent-0.0.12.dist-info/RECORD' 2026-04-05T09:35:16,954 removing build/bdist.linux-armv7l/wheel 2026-04-05T09:35:17,115 Building wheel for efishent (pyproject.toml): finished with status 'done' 2026-04-05T09:35:17,175 Created wheel for efishent: filename=efishent-0.0.12-py3-none-any.whl size=2865732 sha256=6ab83e5c0f14eb8ae4dcf87c6ef27c88dd9214a89a6ef31970820c6efe42b40a 2026-04-05T09:35:17,176 Stored in directory: /tmp/pip-ephem-wheel-cache-i1js_hfj/wheels/fc/22/96/11ec990d72fa0acff76799a1903c3b9525332209b13af45b57 2026-04-05T09:35:17,199 Successfully built efishent 2026-04-05T09:35:17,279 Removed build tracker: '/tmp/pip-build-tracker-86d8o2yq'