2026-04-05T19:41:59,473 Created temporary directory: /tmp/pip-ephem-wheel-cache-lx3pp3bw 2026-04-05T19:41:59,475 Created temporary directory: /tmp/pip-build-tracker-wosbrbm8 2026-04-05T19:41:59,476 Initialized build tracking at /tmp/pip-build-tracker-wosbrbm8 2026-04-05T19:41:59,476 Created build tracker: /tmp/pip-build-tracker-wosbrbm8 2026-04-05T19:41:59,477 Entered build tracker: /tmp/pip-build-tracker-wosbrbm8 2026-04-05T19:41:59,478 Created temporary directory: /tmp/pip-wheel-51tuazdn 2026-04-05T19:41:59,481 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T19:41:59,483 Created temporary directory: /tmp/pip-ephem-wheel-cache-l8h01_jj 2026-04-05T19:41:59,505 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T19:41:59,508 2 location(s) to search for versions of pirlygenes: 2026-04-05T19:41:59,508 * https://pypi.org/simple/pirlygenes/ 2026-04-05T19:41:59,508 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:41:59,509 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-05T19:41:59,510 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-05T19:41:59,511 Found index url https://pypi.org/simple 2026-04-05T19:41:59,740 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-05T19:41:59,744 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,745 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-05T19:41:59,746 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,747 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-05T19:41:59,748 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,749 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-05T19:41:59,750 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,751 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-05T19:41:59,751 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,752 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-05T19:41:59,753 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,754 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-05T19:41:59,755 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,756 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-05T19:41:59,756 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,757 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-05T19:41:59,758 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,759 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-05T19:41:59,760 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:41:59,761 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:41:59,762 Found index url https://www.piwheels.org/simple 2026-04-05T19:41:59,934 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-05T19:41:59,937 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,938 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,939 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,939 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,940 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,941 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,941 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:41:59,942 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:41:59,942 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-05T19:41:59,962 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-05T19:41:59,980 Collecting pirlygenes==2.2.0 2026-04-05T19:41:59,983 Created temporary directory: /tmp/pip-unpack-uxsmag5d 2026-04-05T19:42:00,210 Downloading pirlygenes-2.2.0.tar.gz (671 kB) 2026-04-05T19:42:00,591 Added pirlygenes==2.2.0 from https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-wosbrbm8' 2026-04-05T19:42:00,597 Created temporary directory: /tmp/pip-build-env-ivm7t73s 2026-04-05T19:42:00,602 Installing build dependencies: started 2026-04-05T19:42:00,603 Running command pip subprocess to install build dependencies 2026-04-05T19:42:02,220 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T19:42:02,883 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T19:42:02,906 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T19:42:04,668 Collecting setuptools>=60 2026-04-05T19:42:04,747 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T19:42:05,122 Collecting setuptools-scm>=8.0 2026-04-05T19:42:05,139 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-05T19:42:05,219 Collecting vcs-versioning>=1.0.0.dev0 2026-04-05T19:42:05,240 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-05T19:42:05,450 Collecting packaging>=20 2026-04-05T19:42:05,465 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T19:42:08,477 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-05T19:42:12,311 Creating /tmp/pip-build-env-ivm7t73s/overlay/local/bin 2026-04-05T19:42:12,313 changing mode of /tmp/pip-build-env-ivm7t73s/overlay/local/bin/vcs-versioning to 755 2026-04-05T19:42:12,420 changing mode of /tmp/pip-build-env-ivm7t73s/overlay/local/bin/setuptools-scm to 755 2026-04-05T19:42:12,447 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-05T19:42:12,740 Installing build dependencies: finished with status 'done' 2026-04-05T19:42:12,755 Getting requirements to build wheel: started 2026-04-05T19:42:12,756 Running command Getting requirements to build wheel 2026-04-05T19:42:13,407 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:42:13,517 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:13,518 !! 2026-04-05T19:42:13,519 ******************************************************************************** 2026-04-05T19:42:13,519 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:13,520 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:13,521 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:13,522 ******************************************************************************** 2026-04-05T19:42:13,523 !! 2026-04-05T19:42:13,523 dist._finalize_license_expression() 2026-04-05T19:42:13,524 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:13,524 !! 2026-04-05T19:42:13,525 ******************************************************************************** 2026-04-05T19:42:13,526 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:13,527 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:13,528 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:13,528 ******************************************************************************** 2026-04-05T19:42:13,530 !! 2026-04-05T19:42:13,530 self._finalize_license_expression() 2026-04-05T19:42:13,531 running egg_info 2026-04-05T19:42:13,537 writing pirlygenes.egg-info/PKG-INFO 2026-04-05T19:42:13,541 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:42:13,543 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-05T19:42:13,544 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-05T19:42:13,545 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-05T19:42:13,585 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:42:13,586 return get_active_overrides().subprocess_timeout 2026-04-05T19:42:13,593 listing git files failed - pretending there aren't any 2026-04-05T19:42:13,602 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:13,610 adding license file 'LICENSE' 2026-04-05T19:42:13,614 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:13,720 Getting requirements to build wheel: finished with status 'done' 2026-04-05T19:42:13,724 Created temporary directory: /tmp/pip-modern-metadata-w02qrtqq 2026-04-05T19:42:13,726 Preparing metadata (pyproject.toml): started 2026-04-05T19:42:13,727 Running command Preparing metadata (pyproject.toml) 2026-04-05T19:42:14,332 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:42:14,438 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:14,438 !! 2026-04-05T19:42:14,439 ******************************************************************************** 2026-04-05T19:42:14,440 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:14,441 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:14,442 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:14,443 ******************************************************************************** 2026-04-05T19:42:14,444 !! 2026-04-05T19:42:14,445 dist._finalize_license_expression() 2026-04-05T19:42:14,445 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:14,446 !! 2026-04-05T19:42:14,446 ******************************************************************************** 2026-04-05T19:42:14,447 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:14,448 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:14,449 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:14,449 ******************************************************************************** 2026-04-05T19:42:14,450 !! 2026-04-05T19:42:14,450 self._finalize_license_expression() 2026-04-05T19:42:14,452 running dist_info 2026-04-05T19:42:14,466 creating /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info 2026-04-05T19:42:14,467 writing /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/PKG-INFO 2026-04-05T19:42:14,470 writing dependency_links to /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:42:14,472 writing entry points to /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/entry_points.txt 2026-04-05T19:42:14,474 writing requirements to /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/requires.txt 2026-04-05T19:42:14,475 writing top-level names to /tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/top_level.txt 2026-04-05T19:42:14,476 writing manifest file '/tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:14,512 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:42:14,513 return get_active_overrides().subprocess_timeout 2026-04-05T19:42:14,519 listing git files failed - pretending there aren't any 2026-04-05T19:42:14,527 reading manifest file '/tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:14,529 adding license file 'LICENSE' 2026-04-05T19:42:14,532 writing manifest file '/tmp/pip-modern-metadata-w02qrtqq/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:14,533 creating '/tmp/pip-modern-metadata-w02qrtqq/pirlygenes-2.2.0.dist-info' 2026-04-05T19:42:14,668 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T19:42:14,674 Source in /tmp/pip-wheel-51tuazdn/pirlygenes_55d932c9f8fe4f94b4e92830c52b3a55 has version 2.2.0, which satisfies requirement pirlygenes==2.2.0 from https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz 2026-04-05T19:42:14,675 Removed pirlygenes==2.2.0 from https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-wosbrbm8' 2026-04-05T19:42:14,681 Created temporary directory: /tmp/pip-unpack-5kbjd_qf 2026-04-05T19:42:14,681 Building wheels for collected packages: pirlygenes 2026-04-05T19:42:14,686 Created temporary directory: /tmp/pip-wheel-9rn71jr6 2026-04-05T19:42:14,686 Destination directory: /tmp/pip-wheel-9rn71jr6 2026-04-05T19:42:14,688 Building wheel for pirlygenes (pyproject.toml): started 2026-04-05T19:42:14,689 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-05T19:42:15,281 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:42:15,383 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:15,383 !! 2026-04-05T19:42:15,384 ******************************************************************************** 2026-04-05T19:42:15,385 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:15,386 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:15,387 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:15,387 ******************************************************************************** 2026-04-05T19:42:15,388 !! 2026-04-05T19:42:15,389 dist._finalize_license_expression() 2026-04-05T19:42:15,389 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:42:15,390 !! 2026-04-05T19:42:15,391 ******************************************************************************** 2026-04-05T19:42:15,391 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:42:15,392 License :: OSI Approved :: Apache Software License 2026-04-05T19:42:15,393 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:42:15,394 ******************************************************************************** 2026-04-05T19:42:15,395 !! 2026-04-05T19:42:15,395 self._finalize_license_expression() 2026-04-05T19:42:15,396 running bdist_wheel 2026-04-05T19:42:15,418 running build 2026-04-05T19:42:15,418 running build_py 2026-04-05T19:42:15,420 creating build/lib/pirlygenes 2026-04-05T19:42:15,423 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-05T19:42:15,425 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-05T19:42:15,427 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-05T19:42:15,429 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-05T19:42:15,431 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-05T19:42:15,434 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-05T19:42:15,436 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-05T19:42:15,437 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-05T19:42:15,440 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-05T19:42:15,442 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-05T19:42:15,444 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-05T19:42:15,446 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-05T19:42:15,448 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-05T19:42:15,450 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-05T19:42:15,453 running egg_info 2026-04-05T19:42:15,468 writing pirlygenes.egg-info/PKG-INFO 2026-04-05T19:42:15,471 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:42:15,472 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-05T19:42:15,474 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-05T19:42:15,475 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-05T19:42:15,504 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:42:15,505 return get_active_overrides().subprocess_timeout 2026-04-05T19:42:15,511 listing git files failed - pretending there aren't any 2026-04-05T19:42:15,518 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:15,523 adding license file 'LICENSE' 2026-04-05T19:42:15,528 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:42:15,531 /tmp/pip-build-env-ivm7t73s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-05T19:42:15,531 !! 2026-04-05T19:42:15,532 ******************************************************************************** 2026-04-05T19:42:15,533 ############################ 2026-04-05T19:42:15,533 # Package would be ignored # 2026-04-05T19:42:15,534 ############################ 2026-04-05T19:42:15,534 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-05T19:42:15,534 but it is absent from setuptools' `packages` configuration. 2026-04-05T19:42:15,535 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-05T19:42:15,536 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-05T19:42:15,536 to the `packages` configuration field. 2026-04-05T19:42:15,537 Alternatively, you can also rely on setuptools' discovery methods 2026-04-05T19:42:15,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-05T19:42:15,538 instead of `find_packages(...)`/`find:`). 2026-04-05T19:42:15,539 You can read more about "package discovery" on setuptools documentation page: 2026-04-05T19:42:15,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-05T19:42:15,541 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-05T19:42:15,541 already explicitly excluding 'pirlygenes.data' via 2026-04-05T19:42:15,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-05T19:42:15,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-05T19:42:15,543 combination with a more fine grained `package-data` configuration. 2026-04-05T19:42:15,544 You can read more about "package data files" on setuptools documentation page: 2026-04-05T19:42:15,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-05T19:42:15,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-05T19:42:15,547 even if it does not contain any `.py` files. 2026-04-05T19:42:15,547 On the other hand, currently there is no concept of package data 2026-04-05T19:42:15,548 directory, all directories are treated like packages. 2026-04-05T19:42:15,548 ******************************************************************************** 2026-04-05T19:42:15,549 !! 2026-04-05T19:42:15,550 check.warn(importable) 2026-04-05T19:42:15,550 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-05T19:42:15,551 creating build/lib/pirlygenes/data 2026-04-05T19:42:15,551 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,552 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,552 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,553 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,553 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,555 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,558 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,560 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,564 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,566 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,570 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,572 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,574 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,577 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-05T19:42:15,593 installing to build/bdist.linux-armv7l/wheel 2026-04-05T19:42:15,594 running install 2026-04-05T19:42:15,616 running install_lib 2026-04-05T19:42:15,624 creating build/bdist.linux-armv7l/wheel 2026-04-05T19:42:15,626 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-05T19:42:15,628 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,630 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,632 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,634 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,636 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,638 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,640 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,642 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,644 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,647 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,649 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,651 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,653 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,655 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,658 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-05T19:42:15,659 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,661 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,663 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,665 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,669 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,672 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,674 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,676 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,679 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,682 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,684 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,686 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,690 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,694 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:42:15,696 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:42:15,698 running install_egg_info 2026-04-05T19:42:15,706 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.2.0-py3.11.egg-info 2026-04-05T19:42:15,719 running install_scripts 2026-04-05T19:42:15,733 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.2.0.dist-info/WHEEL 2026-04-05T19:42:15,736 creating '/tmp/pip-wheel-9rn71jr6/.tmp-3mrli5oy/pirlygenes-2.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T19:42:15,739 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-05T19:42:15,741 adding 'pirlygenes/__init__.py' 2026-04-05T19:42:15,743 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-05T19:42:15,745 adding 'pirlygenes/cli.py' 2026-04-05T19:42:15,747 adding 'pirlygenes/common.py' 2026-04-05T19:42:15,749 adding 'pirlygenes/gene_ids.py' 2026-04-05T19:42:15,751 adding 'pirlygenes/gene_names.py' 2026-04-05T19:42:15,754 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-05T19:42:15,756 adding 'pirlygenes/gene_sets_old.py' 2026-04-05T19:42:15,758 adding 'pirlygenes/load_dataset.py' 2026-04-05T19:42:15,760 adding 'pirlygenes/load_expression.py' 2026-04-05T19:42:15,762 adding 'pirlygenes/plot.py' 2026-04-05T19:42:15,764 adding 'pirlygenes/plot_data_helpers.py' 2026-04-05T19:42:15,766 adding 'pirlygenes/transcript_to_gene.py' 2026-04-05T19:42:15,768 adding 'pirlygenes/version.py' 2026-04-05T19:42:15,771 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-05T19:42:15,775 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-05T19:42:15,777 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-05T19:42:15,779 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-05T19:42:15,781 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-05T19:42:15,785 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-05T19:42:15,787 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-05T19:42:15,792 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-05T19:42:15,795 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-05T19:42:15,802 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-05T19:42:15,804 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-05T19:42:15,806 adding 'pirlygenes/data/interferon-response.csv' 2026-04-05T19:42:15,808 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-05T19:42:15,810 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-05T19:42:15,813 adding 'pirlygenes-2.2.0.dist-info/licenses/LICENSE' 2026-04-05T19:42:15,815 adding 'pirlygenes-2.2.0.dist-info/METADATA' 2026-04-05T19:42:15,817 adding 'pirlygenes-2.2.0.dist-info/WHEEL' 2026-04-05T19:42:15,818 adding 'pirlygenes-2.2.0.dist-info/entry_points.txt' 2026-04-05T19:42:15,819 adding 'pirlygenes-2.2.0.dist-info/top_level.txt' 2026-04-05T19:42:15,820 adding 'pirlygenes-2.2.0.dist-info/RECORD' 2026-04-05T19:42:15,822 removing build/bdist.linux-armv7l/wheel 2026-04-05T19:42:15,939 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-05T19:42:15,945 Created wheel for pirlygenes: filename=pirlygenes-2.2.0-py3-none-any.whl size=91563 sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 2026-04-05T19:42:15,946 Stored in directory: /tmp/pip-ephem-wheel-cache-l8h01_jj/wheels/73/51/ae/344ca7dc3bd65cc78aac83faa6aa95e04da34207f7884ae0e0 2026-04-05T19:42:15,960 Successfully built pirlygenes 2026-04-05T19:42:15,966 Removed build tracker: '/tmp/pip-build-tracker-wosbrbm8'