2026-04-05T19:52:35,916 Created temporary directory: /tmp/pip-ephem-wheel-cache-xm9_3i0e 2026-04-05T19:52:35,918 Created temporary directory: /tmp/pip-build-tracker-fwdklfrd 2026-04-05T19:52:35,919 Initialized build tracking at /tmp/pip-build-tracker-fwdklfrd 2026-04-05T19:52:35,919 Created build tracker: /tmp/pip-build-tracker-fwdklfrd 2026-04-05T19:52:35,919 Entered build tracker: /tmp/pip-build-tracker-fwdklfrd 2026-04-05T19:52:35,920 Created temporary directory: /tmp/pip-wheel-h2jdmamk 2026-04-05T19:52:35,923 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T19:52:35,926 Created temporary directory: /tmp/pip-ephem-wheel-cache-g9z81i7y 2026-04-05T19:52:35,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T19:52:35,953 2 location(s) to search for versions of pirlygenes: 2026-04-05T19:52:35,953 * https://pypi.org/simple/pirlygenes/ 2026-04-05T19:52:35,953 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:52:35,954 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-05T19:52:35,955 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-05T19:52:35,956 Found index url https://pypi.org/simple 2026-04-05T19:52:36,110 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-05T19:52:36,114 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,115 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-05T19:52:36,116 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,117 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-05T19:52:36,118 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,119 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-05T19:52:36,119 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,120 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-05T19:52:36,121 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,122 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-05T19:52:36,123 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,124 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-05T19:52:36,124 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,125 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-05T19:52:36,125 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,126 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-05T19:52:36,127 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,128 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-05T19:52:36,129 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:52:36,129 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:52:36,131 Found index url https://www.piwheels.org/simple 2026-04-05T19:52:36,308 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-05T19:52:36,311 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,312 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,312 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,313 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,314 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,314 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,315 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,315 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-05T19:52:36,316 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-05T19:52:36,316 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-05T19:52:36,336 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-05T19:52:36,354 Collecting pirlygenes==2.2.1 2026-04-05T19:52:36,356 Created temporary directory: /tmp/pip-unpack-f_v6wg8o 2026-04-05T19:52:36,585 Downloading pirlygenes-2.2.1.tar.gz (671 kB) 2026-04-05T19:52:36,888 Added pirlygenes==2.2.1 from https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-fwdklfrd' 2026-04-05T19:52:36,893 Created temporary directory: /tmp/pip-build-env-hpj0t8un 2026-04-05T19:52:36,898 Installing build dependencies: started 2026-04-05T19:52:36,899 Running command pip subprocess to install build dependencies 2026-04-05T19:52:38,026 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T19:52:38,466 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T19:52:38,489 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T19:52:40,285 Collecting setuptools>=60 2026-04-05T19:52:40,413 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T19:52:40,829 Collecting setuptools-scm>=8.0 2026-04-05T19:52:40,847 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-05T19:52:40,933 Collecting vcs-versioning>=1.0.0.dev0 2026-04-05T19:52:41,174 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-05T19:52:41,355 Collecting packaging>=20 2026-04-05T19:52:41,406 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T19:52:44,420 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-05T19:52:48,009 Creating /tmp/pip-build-env-hpj0t8un/overlay/local/bin 2026-04-05T19:52:48,012 changing mode of /tmp/pip-build-env-hpj0t8un/overlay/local/bin/vcs-versioning to 755 2026-04-05T19:52:48,142 changing mode of /tmp/pip-build-env-hpj0t8un/overlay/local/bin/setuptools-scm to 755 2026-04-05T19:52:48,179 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-05T19:52:48,474 Installing build dependencies: finished with status 'done' 2026-04-05T19:52:48,491 Getting requirements to build wheel: started 2026-04-05T19:52:48,492 Running command Getting requirements to build wheel 2026-04-05T19:52:49,182 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:52:49,297 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:49,298 !! 2026-04-05T19:52:49,299 ******************************************************************************** 2026-04-05T19:52:49,299 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:49,300 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:49,301 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:49,301 ******************************************************************************** 2026-04-05T19:52:49,302 !! 2026-04-05T19:52:49,303 dist._finalize_license_expression() 2026-04-05T19:52:49,303 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:49,304 !! 2026-04-05T19:52:49,305 ******************************************************************************** 2026-04-05T19:52:49,305 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:49,307 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:49,308 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:49,308 ******************************************************************************** 2026-04-05T19:52:49,310 !! 2026-04-05T19:52:49,310 self._finalize_license_expression() 2026-04-05T19:52:49,312 running egg_info 2026-04-05T19:52:49,321 writing pirlygenes.egg-info/PKG-INFO 2026-04-05T19:52:49,325 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:52:49,327 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-05T19:52:49,329 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-05T19:52:49,330 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-05T19:52:49,371 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:52:49,372 return get_active_overrides().subprocess_timeout 2026-04-05T19:52:49,379 listing git files failed - pretending there aren't any 2026-04-05T19:52:49,389 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:49,396 adding license file 'LICENSE' 2026-04-05T19:52:49,401 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:49,507 Getting requirements to build wheel: finished with status 'done' 2026-04-05T19:52:49,511 Created temporary directory: /tmp/pip-modern-metadata-xmonizvx 2026-04-05T19:52:49,513 Preparing metadata (pyproject.toml): started 2026-04-05T19:52:49,515 Running command Preparing metadata (pyproject.toml) 2026-04-05T19:52:50,135 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:52:50,244 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:50,245 !! 2026-04-05T19:52:50,247 ******************************************************************************** 2026-04-05T19:52:50,248 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:50,249 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:50,250 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:50,251 ******************************************************************************** 2026-04-05T19:52:50,252 !! 2026-04-05T19:52:50,252 dist._finalize_license_expression() 2026-04-05T19:52:50,253 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:50,253 !! 2026-04-05T19:52:50,254 ******************************************************************************** 2026-04-05T19:52:50,254 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:50,256 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:50,257 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:50,257 ******************************************************************************** 2026-04-05T19:52:50,258 !! 2026-04-05T19:52:50,258 self._finalize_license_expression() 2026-04-05T19:52:50,262 running dist_info 2026-04-05T19:52:50,277 creating /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info 2026-04-05T19:52:50,278 writing /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/PKG-INFO 2026-04-05T19:52:50,282 writing dependency_links to /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:52:50,284 writing entry points to /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/entry_points.txt 2026-04-05T19:52:50,285 writing requirements to /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/requires.txt 2026-04-05T19:52:50,286 writing top-level names to /tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/top_level.txt 2026-04-05T19:52:50,288 writing manifest file '/tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:50,325 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:52:50,326 return get_active_overrides().subprocess_timeout 2026-04-05T19:52:50,332 listing git files failed - pretending there aren't any 2026-04-05T19:52:50,341 reading manifest file '/tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:50,343 adding license file 'LICENSE' 2026-04-05T19:52:50,347 writing manifest file '/tmp/pip-modern-metadata-xmonizvx/pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:50,348 creating '/tmp/pip-modern-metadata-xmonizvx/pirlygenes-2.2.1.dist-info' 2026-04-05T19:52:50,488 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T19:52:50,494 Source in /tmp/pip-wheel-h2jdmamk/pirlygenes_fd49c9dc9900498fb221f3ede7f6db77 has version 2.2.1, which satisfies requirement pirlygenes==2.2.1 from https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz 2026-04-05T19:52:50,495 Removed pirlygenes==2.2.1 from https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-fwdklfrd' 2026-04-05T19:52:50,501 Created temporary directory: /tmp/pip-unpack-5oc79v3o 2026-04-05T19:52:50,502 Building wheels for collected packages: pirlygenes 2026-04-05T19:52:50,507 Created temporary directory: /tmp/pip-wheel-xer8l6sb 2026-04-05T19:52:50,507 Destination directory: /tmp/pip-wheel-xer8l6sb 2026-04-05T19:52:50,510 Building wheel for pirlygenes (pyproject.toml): started 2026-04-05T19:52:50,511 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-05T19:52:51,108 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-05T19:52:51,209 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:51,210 !! 2026-04-05T19:52:51,211 ******************************************************************************** 2026-04-05T19:52:51,211 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:51,212 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:51,213 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:51,214 ******************************************************************************** 2026-04-05T19:52:51,215 !! 2026-04-05T19:52:51,215 dist._finalize_license_expression() 2026-04-05T19:52:51,216 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-05T19:52:51,216 !! 2026-04-05T19:52:51,217 ******************************************************************************** 2026-04-05T19:52:51,218 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-05T19:52:51,219 License :: OSI Approved :: Apache Software License 2026-04-05T19:52:51,220 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T19:52:51,221 ******************************************************************************** 2026-04-05T19:52:51,222 !! 2026-04-05T19:52:51,223 self._finalize_license_expression() 2026-04-05T19:52:51,224 running bdist_wheel 2026-04-05T19:52:51,244 running build 2026-04-05T19:52:51,245 running build_py 2026-04-05T19:52:51,247 creating build/lib/pirlygenes 2026-04-05T19:52:51,250 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-05T19:52:51,253 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-05T19:52:51,255 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-05T19:52:51,257 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-05T19:52:51,259 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-05T19:52:51,262 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-05T19:52:51,264 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-05T19:52:51,265 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-05T19:52:51,268 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-05T19:52:51,270 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-05T19:52:51,272 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-05T19:52:51,274 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-05T19:52:51,276 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-05T19:52:51,279 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-05T19:52:51,281 running egg_info 2026-04-05T19:52:51,297 writing pirlygenes.egg-info/PKG-INFO 2026-04-05T19:52:51,301 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-05T19:52:51,302 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-05T19:52:51,303 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-05T19:52:51,304 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-05T19:52:51,336 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-05T19:52:51,337 return get_active_overrides().subprocess_timeout 2026-04-05T19:52:51,343 listing git files failed - pretending there aren't any 2026-04-05T19:52:51,350 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:51,355 adding license file 'LICENSE' 2026-04-05T19:52:51,360 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-05T19:52:51,363 /tmp/pip-build-env-hpj0t8un/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-05T19:52:51,363 !! 2026-04-05T19:52:51,364 ******************************************************************************** 2026-04-05T19:52:51,365 ############################ 2026-04-05T19:52:51,365 # Package would be ignored # 2026-04-05T19:52:51,365 ############################ 2026-04-05T19:52:51,366 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-05T19:52:51,366 but it is absent from setuptools' `packages` configuration. 2026-04-05T19:52:51,367 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-05T19:52:51,368 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-05T19:52:51,368 to the `packages` configuration field. 2026-04-05T19:52:51,369 Alternatively, you can also rely on setuptools' discovery methods 2026-04-05T19:52:51,370 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-05T19:52:51,370 instead of `find_packages(...)`/`find:`). 2026-04-05T19:52:51,371 You can read more about "package discovery" on setuptools documentation page: 2026-04-05T19:52:51,372 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-05T19:52:51,373 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-05T19:52:51,373 already explicitly excluding 'pirlygenes.data' via 2026-04-05T19:52:51,374 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-05T19:52:51,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-05T19:52:51,376 combination with a more fine grained `package-data` configuration. 2026-04-05T19:52:51,377 You can read more about "package data files" on setuptools documentation page: 2026-04-05T19:52:51,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-05T19:52:51,380 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-05T19:52:51,380 even if it does not contain any `.py` files. 2026-04-05T19:52:51,381 On the other hand, currently there is no concept of package data 2026-04-05T19:52:51,381 directory, all directories are treated like packages. 2026-04-05T19:52:51,382 ******************************************************************************** 2026-04-05T19:52:51,383 !! 2026-04-05T19:52:51,383 check.warn(importable) 2026-04-05T19:52:51,384 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-05T19:52:51,385 creating build/lib/pirlygenes/data 2026-04-05T19:52:51,385 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,385 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,386 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,387 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,387 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,388 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,391 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,393 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,397 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,399 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,403 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,405 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,407 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,410 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-05T19:52:51,426 installing to build/bdist.linux-armv7l/wheel 2026-04-05T19:52:51,427 running install 2026-04-05T19:52:51,450 running install_lib 2026-04-05T19:52:51,458 creating build/bdist.linux-armv7l/wheel 2026-04-05T19:52:51,460 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-05T19:52:51,461 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,463 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,465 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,467 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,469 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,471 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,473 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,475 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,477 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,480 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,482 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,484 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,486 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,488 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,491 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-05T19:52:51,492 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,494 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,496 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,497 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,501 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,503 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,505 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,507 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,510 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,513 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,515 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,516 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,520 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,524 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-05T19:52:51,526 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-05T19:52:51,529 running install_egg_info 2026-04-05T19:52:51,536 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.2.1-py3.11.egg-info 2026-04-05T19:52:51,547 running install_scripts 2026-04-05T19:52:51,560 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.2.1.dist-info/WHEEL 2026-04-05T19:52:51,563 creating '/tmp/pip-wheel-xer8l6sb/.tmp-bwdyigwf/pirlygenes-2.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T19:52:51,565 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-05T19:52:51,567 adding 'pirlygenes/__init__.py' 2026-04-05T19:52:51,568 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-05T19:52:51,570 adding 'pirlygenes/cli.py' 2026-04-05T19:52:51,571 adding 'pirlygenes/common.py' 2026-04-05T19:52:51,573 adding 'pirlygenes/gene_ids.py' 2026-04-05T19:52:51,574 adding 'pirlygenes/gene_names.py' 2026-04-05T19:52:51,577 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-05T19:52:51,578 adding 'pirlygenes/gene_sets_old.py' 2026-04-05T19:52:51,579 adding 'pirlygenes/load_dataset.py' 2026-04-05T19:52:51,581 adding 'pirlygenes/load_expression.py' 2026-04-05T19:52:51,583 adding 'pirlygenes/plot.py' 2026-04-05T19:52:51,585 adding 'pirlygenes/plot_data_helpers.py' 2026-04-05T19:52:51,586 adding 'pirlygenes/transcript_to_gene.py' 2026-04-05T19:52:51,588 adding 'pirlygenes/version.py' 2026-04-05T19:52:51,590 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-05T19:52:51,594 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-05T19:52:51,595 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-05T19:52:51,597 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-05T19:52:51,598 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-05T19:52:51,601 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-05T19:52:51,603 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-05T19:52:51,608 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-05T19:52:51,610 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-05T19:52:51,617 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-05T19:52:51,618 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-05T19:52:51,619 adding 'pirlygenes/data/interferon-response.csv' 2026-04-05T19:52:51,621 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-05T19:52:51,622 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-05T19:52:51,626 adding 'pirlygenes-2.2.1.dist-info/licenses/LICENSE' 2026-04-05T19:52:51,628 adding 'pirlygenes-2.2.1.dist-info/METADATA' 2026-04-05T19:52:51,629 adding 'pirlygenes-2.2.1.dist-info/WHEEL' 2026-04-05T19:52:51,630 adding 'pirlygenes-2.2.1.dist-info/entry_points.txt' 2026-04-05T19:52:51,631 adding 'pirlygenes-2.2.1.dist-info/top_level.txt' 2026-04-05T19:52:51,632 adding 'pirlygenes-2.2.1.dist-info/RECORD' 2026-04-05T19:52:51,635 removing build/bdist.linux-armv7l/wheel 2026-04-05T19:52:51,751 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-05T19:52:51,757 Created wheel for pirlygenes: filename=pirlygenes-2.2.1-py3-none-any.whl size=91805 sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 2026-04-05T19:52:51,758 Stored in directory: /tmp/pip-ephem-wheel-cache-g9z81i7y/wheels/6b/ae/75/35be68b009d4dbc581b09f5e8cd7006ec8573b03385023b3e3 2026-04-05T19:52:51,772 Successfully built pirlygenes 2026-04-05T19:52:51,778 Removed build tracker: '/tmp/pip-build-tracker-fwdklfrd'