2026-04-06T02:45:33,111 Created temporary directory: /tmp/pip-ephem-wheel-cache-ut6psnu0 2026-04-06T02:45:33,113 Created temporary directory: /tmp/pip-build-tracker-gdntkzsf 2026-04-06T02:45:33,114 Initialized build tracking at /tmp/pip-build-tracker-gdntkzsf 2026-04-06T02:45:33,114 Created build tracker: /tmp/pip-build-tracker-gdntkzsf 2026-04-06T02:45:33,115 Entered build tracker: /tmp/pip-build-tracker-gdntkzsf 2026-04-06T02:45:33,115 Created temporary directory: /tmp/pip-wheel-0tr770cm 2026-04-06T02:45:33,118 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T02:45:33,121 Created temporary directory: /tmp/pip-ephem-wheel-cache-vpm5hpv1 2026-04-06T02:45:33,142 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T02:45:33,146 2 location(s) to search for versions of pirlygenes: 2026-04-06T02:45:33,146 * https://pypi.org/simple/pirlygenes/ 2026-04-06T02:45:33,146 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T02:45:33,147 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-06T02:45:33,147 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-06T02:45:33,149 Found index url https://pypi.org/simple 2026-04-06T02:45:33,375 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-06T02:45:33,379 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,380 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-06T02:45:33,381 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,382 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-06T02:45:33,383 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,384 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-06T02:45:33,385 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,386 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-06T02:45:33,386 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,387 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-06T02:45:33,388 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,389 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-06T02:45:33,390 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,391 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-06T02:45:33,391 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,392 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-06T02:45:33,392 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,393 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-06T02:45:33,394 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/23/eb/83f7d6be1025085e7c29efc3a3d0e5ba1adab69b03202b425503da5e13b6/pirlygenes-2.3.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,395 Found link https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.0 2026-04-06T02:45:33,396 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/72/59/5cb1b74270e4b9f43f9db46affd988d079371b6a7fd5ac939bfd8a90550e/pirlygenes-2.3.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,397 Found link https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.1 2026-04-06T02:45:33,398 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T02:45:33,398 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T02:45:33,400 Found index url https://www.piwheels.org/simple 2026-04-06T02:45:33,573 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-06T02:45:33,577 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,577 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,578 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,579 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,579 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,579 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,580 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,581 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,581 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T02:45:33,582 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T02:45:33,583 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-06T02:45:33,604 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-06T02:45:33,624 Collecting pirlygenes==2.3.0 2026-04-06T02:45:33,626 Created temporary directory: /tmp/pip-unpack-occ0glk9 2026-04-06T02:45:33,773 Downloading pirlygenes-2.3.0.tar.gz (672 kB) 2026-04-06T02:45:34,186 Added pirlygenes==2.3.0 from https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-gdntkzsf' 2026-04-06T02:45:34,192 Created temporary directory: /tmp/pip-build-env-h7_95jnq 2026-04-06T02:45:34,196 Installing build dependencies: started 2026-04-06T02:45:34,198 Running command pip subprocess to install build dependencies 2026-04-06T02:45:34,228 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-06T02:45:34,267 Traceback (most recent call last): 2026-04-06T02:45:34,268 File "", line 192, in addpackage 2026-04-06T02:45:34,269 File "", line 1, in 2026-04-06T02:45:34,269 ModuleNotFoundError: No module named 'outofcuda' 2026-04-06T02:45:34,271 Remainder of file ignored 2026-04-06T02:45:35,348 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-06T02:45:35,761 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T02:45:35,784 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T02:45:37,581 Collecting setuptools>=60 2026-04-06T02:45:37,719 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-06T02:45:38,133 Collecting setuptools-scm>=8.0 2026-04-06T02:45:38,153 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-06T02:45:38,234 Collecting vcs-versioning>=1.0.0.dev0 2026-04-06T02:45:38,252 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-06T02:45:38,474 Collecting packaging>=20 2026-04-06T02:45:38,491 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-06T02:45:41,493 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-06T02:45:45,104 Creating /tmp/pip-build-env-h7_95jnq/overlay/local/bin 2026-04-06T02:45:45,106 changing mode of /tmp/pip-build-env-h7_95jnq/overlay/local/bin/vcs-versioning to 755 2026-04-06T02:45:45,217 changing mode of /tmp/pip-build-env-h7_95jnq/overlay/local/bin/setuptools-scm to 755 2026-04-06T02:45:45,245 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-06T02:45:45,527 Installing build dependencies: finished with status 'done' 2026-04-06T02:45:45,542 Getting requirements to build wheel: started 2026-04-06T02:45:45,543 Running command Getting requirements to build wheel 2026-04-06T02:45:46,203 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T02:45:46,529 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:46,530 !! 2026-04-06T02:45:46,531 ******************************************************************************** 2026-04-06T02:45:46,531 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:46,533 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:46,534 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:46,535 ******************************************************************************** 2026-04-06T02:45:46,536 !! 2026-04-06T02:45:46,536 dist._finalize_license_expression() 2026-04-06T02:45:46,537 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:46,538 !! 2026-04-06T02:45:46,539 ******************************************************************************** 2026-04-06T02:45:46,539 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:46,540 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:46,542 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:46,542 ******************************************************************************** 2026-04-06T02:45:46,544 !! 2026-04-06T02:45:46,544 self._finalize_license_expression() 2026-04-06T02:45:46,545 running egg_info 2026-04-06T02:45:46,550 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T02:45:46,554 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T02:45:46,556 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T02:45:46,557 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T02:45:46,558 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T02:45:46,598 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T02:45:46,599 return get_active_overrides().subprocess_timeout 2026-04-06T02:45:46,606 listing git files failed - pretending there aren't any 2026-04-06T02:45:46,617 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:46,625 adding license file 'LICENSE' 2026-04-06T02:45:46,629 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:46,732 Getting requirements to build wheel: finished with status 'done' 2026-04-06T02:45:46,735 Created temporary directory: /tmp/pip-modern-metadata-v3xmfyti 2026-04-06T02:45:46,738 Preparing metadata (pyproject.toml): started 2026-04-06T02:45:46,739 Running command Preparing metadata (pyproject.toml) 2026-04-06T02:45:47,381 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T02:45:47,489 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:47,490 !! 2026-04-06T02:45:47,491 ******************************************************************************** 2026-04-06T02:45:47,492 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:47,493 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:47,494 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:47,495 ******************************************************************************** 2026-04-06T02:45:47,496 !! 2026-04-06T02:45:47,497 dist._finalize_license_expression() 2026-04-06T02:45:47,497 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:47,498 !! 2026-04-06T02:45:47,499 ******************************************************************************** 2026-04-06T02:45:47,500 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:47,501 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:47,502 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:47,503 ******************************************************************************** 2026-04-06T02:45:47,504 !! 2026-04-06T02:45:47,505 self._finalize_license_expression() 2026-04-06T02:45:47,506 running dist_info 2026-04-06T02:45:47,521 creating /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info 2026-04-06T02:45:47,522 writing /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/PKG-INFO 2026-04-06T02:45:47,526 writing dependency_links to /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/dependency_links.txt 2026-04-06T02:45:47,528 writing entry points to /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/entry_points.txt 2026-04-06T02:45:47,529 writing requirements to /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/requires.txt 2026-04-06T02:45:47,530 writing top-level names to /tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/top_level.txt 2026-04-06T02:45:47,532 writing manifest file '/tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:47,569 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T02:45:47,569 return get_active_overrides().subprocess_timeout 2026-04-06T02:45:47,576 listing git files failed - pretending there aren't any 2026-04-06T02:45:47,584 reading manifest file '/tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:47,586 adding license file 'LICENSE' 2026-04-06T02:45:47,589 writing manifest file '/tmp/pip-modern-metadata-v3xmfyti/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:47,590 creating '/tmp/pip-modern-metadata-v3xmfyti/pirlygenes-2.3.0.dist-info' 2026-04-06T02:45:47,725 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-06T02:45:47,731 Source in /tmp/pip-wheel-0tr770cm/pirlygenes_25361c3cf8c64ac5ba7cec27862dd001 has version 2.3.0, which satisfies requirement pirlygenes==2.3.0 from https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz 2026-04-06T02:45:47,732 Removed pirlygenes==2.3.0 from https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-gdntkzsf' 2026-04-06T02:45:47,738 Created temporary directory: /tmp/pip-unpack-9tcl_gbs 2026-04-06T02:45:47,738 Building wheels for collected packages: pirlygenes 2026-04-06T02:45:47,743 Created temporary directory: /tmp/pip-wheel-hp6vfi6y 2026-04-06T02:45:47,744 Destination directory: /tmp/pip-wheel-hp6vfi6y 2026-04-06T02:45:47,746 Building wheel for pirlygenes (pyproject.toml): started 2026-04-06T02:45:47,748 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-06T02:45:48,348 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T02:45:48,447 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:48,448 !! 2026-04-06T02:45:48,449 ******************************************************************************** 2026-04-06T02:45:48,449 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:48,450 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:48,452 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:48,452 ******************************************************************************** 2026-04-06T02:45:48,454 !! 2026-04-06T02:45:48,454 dist._finalize_license_expression() 2026-04-06T02:45:48,455 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T02:45:48,455 !! 2026-04-06T02:45:48,457 ******************************************************************************** 2026-04-06T02:45:48,457 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T02:45:48,458 License :: OSI Approved :: Apache Software License 2026-04-06T02:45:48,460 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T02:45:48,460 ******************************************************************************** 2026-04-06T02:45:48,461 !! 2026-04-06T02:45:48,462 self._finalize_license_expression() 2026-04-06T02:45:48,463 running bdist_wheel 2026-04-06T02:45:48,482 running build 2026-04-06T02:45:48,482 running build_py 2026-04-06T02:45:48,484 creating build/lib/pirlygenes 2026-04-06T02:45:48,487 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-06T02:45:48,490 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-06T02:45:48,492 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-06T02:45:48,494 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-06T02:45:48,496 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-06T02:45:48,499 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-06T02:45:48,502 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-06T02:45:48,505 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-06T02:45:48,507 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-06T02:45:48,509 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-06T02:45:48,511 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-06T02:45:48,513 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-06T02:45:48,516 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-06T02:45:48,518 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-06T02:45:48,520 running egg_info 2026-04-06T02:45:48,535 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T02:45:48,538 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T02:45:48,540 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T02:45:48,541 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T02:45:48,542 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T02:45:48,572 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T02:45:48,572 return get_active_overrides().subprocess_timeout 2026-04-06T02:45:48,579 listing git files failed - pretending there aren't any 2026-04-06T02:45:48,586 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:48,591 adding license file 'LICENSE' 2026-04-06T02:45:48,596 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T02:45:48,598 /tmp/pip-build-env-h7_95jnq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-06T02:45:48,599 !! 2026-04-06T02:45:48,600 ******************************************************************************** 2026-04-06T02:45:48,601 ############################ 2026-04-06T02:45:48,601 # Package would be ignored # 2026-04-06T02:45:48,602 ############################ 2026-04-06T02:45:48,602 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-06T02:45:48,603 but it is absent from setuptools' `packages` configuration. 2026-04-06T02:45:48,604 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-06T02:45:48,605 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-06T02:45:48,605 to the `packages` configuration field. 2026-04-06T02:45:48,606 Alternatively, you can also rely on setuptools' discovery methods 2026-04-06T02:45:48,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-06T02:45:48,607 instead of `find_packages(...)`/`find:`). 2026-04-06T02:45:48,608 You can read more about "package discovery" on setuptools documentation page: 2026-04-06T02:45:48,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-06T02:45:48,611 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-06T02:45:48,611 already explicitly excluding 'pirlygenes.data' via 2026-04-06T02:45:48,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-06T02:45:48,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-06T02:45:48,614 combination with a more fine grained `package-data` configuration. 2026-04-06T02:45:48,614 You can read more about "package data files" on setuptools documentation page: 2026-04-06T02:45:48,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-06T02:45:48,617 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-06T02:45:48,617 even if it does not contain any `.py` files. 2026-04-06T02:45:48,617 On the other hand, currently there is no concept of package data 2026-04-06T02:45:48,618 directory, all directories are treated like packages. 2026-04-06T02:45:48,618 ******************************************************************************** 2026-04-06T02:45:48,619 !! 2026-04-06T02:45:48,620 check.warn(importable) 2026-04-06T02:45:48,620 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-06T02:45:48,621 creating build/lib/pirlygenes/data 2026-04-06T02:45:48,621 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,621 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,622 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,622 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,623 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,623 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,625 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,628 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,631 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,634 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,638 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,640 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,643 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,645 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,647 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-06T02:45:48,664 installing to build/bdist.linux-armv7l/wheel 2026-04-06T02:45:48,665 running install 2026-04-06T02:45:48,688 running install_lib 2026-04-06T02:45:48,696 creating build/bdist.linux-armv7l/wheel 2026-04-06T02:45:48,699 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-06T02:45:48,700 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,702 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,704 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,706 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,708 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,711 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-06T02:45:48,712 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,715 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,719 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,721 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,723 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,724 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,726 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,728 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,730 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,732 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,734 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,736 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,738 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,741 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,744 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T02:45:48,746 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,748 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,750 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,753 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,755 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,757 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,759 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,762 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,764 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,766 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T02:45:48,768 running install_egg_info 2026-04-06T02:45:48,775 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.3.0-py3.11.egg-info 2026-04-06T02:45:48,788 running install_scripts 2026-04-06T02:45:48,800 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.3.0.dist-info/WHEEL 2026-04-06T02:45:48,803 creating '/tmp/pip-wheel-hp6vfi6y/.tmp-48bbo0e2/pirlygenes-2.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-06T02:45:48,806 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-06T02:45:48,807 adding 'pirlygenes/__init__.py' 2026-04-06T02:45:48,809 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-06T02:45:48,810 adding 'pirlygenes/cli.py' 2026-04-06T02:45:48,812 adding 'pirlygenes/common.py' 2026-04-06T02:45:48,813 adding 'pirlygenes/gene_ids.py' 2026-04-06T02:45:48,815 adding 'pirlygenes/gene_names.py' 2026-04-06T02:45:48,817 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-06T02:45:48,819 adding 'pirlygenes/gene_sets_old.py' 2026-04-06T02:45:48,820 adding 'pirlygenes/load_dataset.py' 2026-04-06T02:45:48,822 adding 'pirlygenes/load_expression.py' 2026-04-06T02:45:48,824 adding 'pirlygenes/plot.py' 2026-04-06T02:45:48,826 adding 'pirlygenes/plot_data_helpers.py' 2026-04-06T02:45:48,827 adding 'pirlygenes/transcript_to_gene.py' 2026-04-06T02:45:48,828 adding 'pirlygenes/version.py' 2026-04-06T02:45:48,830 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-06T02:45:48,834 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-06T02:45:48,836 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-06T02:45:48,837 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-06T02:45:48,838 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-06T02:45:48,842 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-06T02:45:48,843 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-06T02:45:48,848 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-06T02:45:48,850 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-06T02:45:48,857 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-06T02:45:48,858 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-06T02:45:48,860 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-06T02:45:48,861 adding 'pirlygenes/data/interferon-response.csv' 2026-04-06T02:45:48,863 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-06T02:45:48,864 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-06T02:45:48,868 adding 'pirlygenes-2.3.0.dist-info/licenses/LICENSE' 2026-04-06T02:45:48,870 adding 'pirlygenes-2.3.0.dist-info/METADATA' 2026-04-06T02:45:48,871 adding 'pirlygenes-2.3.0.dist-info/WHEEL' 2026-04-06T02:45:48,872 adding 'pirlygenes-2.3.0.dist-info/entry_points.txt' 2026-04-06T02:45:48,873 adding 'pirlygenes-2.3.0.dist-info/top_level.txt' 2026-04-06T02:45:48,874 adding 'pirlygenes-2.3.0.dist-info/RECORD' 2026-04-06T02:45:48,876 removing build/bdist.linux-armv7l/wheel 2026-04-06T02:45:48,989 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-06T02:45:48,995 Created wheel for pirlygenes: filename=pirlygenes-2.3.0-py3-none-any.whl size=93306 sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d 2026-04-06T02:45:48,997 Stored in directory: /tmp/pip-ephem-wheel-cache-vpm5hpv1/wheels/88/a0/a2/2aec1db5dde75784bba1f20c60f8fd59746e9a00b6d1ce657e 2026-04-06T02:45:49,009 Successfully built pirlygenes 2026-04-06T02:45:49,016 Removed build tracker: '/tmp/pip-build-tracker-gdntkzsf'