2026-04-06T03:43:40,739 Created temporary directory: /tmp/pip-ephem-wheel-cache-bzle4e7p 2026-04-06T03:43:40,740 Created temporary directory: /tmp/pip-build-tracker-29mxqcil 2026-04-06T03:43:40,741 Initialized build tracking at /tmp/pip-build-tracker-29mxqcil 2026-04-06T03:43:40,742 Created build tracker: /tmp/pip-build-tracker-29mxqcil 2026-04-06T03:43:40,742 Entered build tracker: /tmp/pip-build-tracker-29mxqcil 2026-04-06T03:43:40,743 Created temporary directory: /tmp/pip-wheel-7zc2mwbd 2026-04-06T03:43:40,746 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T03:43:40,748 Created temporary directory: /tmp/pip-ephem-wheel-cache-mn384sz2 2026-04-06T03:43:40,770 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T03:43:40,774 2 location(s) to search for versions of pirlygenes: 2026-04-06T03:43:40,774 * https://pypi.org/simple/pirlygenes/ 2026-04-06T03:43:40,774 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T03:43:40,775 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-06T03:43:40,775 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-06T03:43:40,777 Found index url https://pypi.org/simple 2026-04-06T03:43:40,929 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-06T03:43:40,934 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,935 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-06T03:43:40,936 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,937 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-06T03:43:40,938 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,938 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-06T03:43:40,939 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,940 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-06T03:43:40,941 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,942 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-06T03:43:40,943 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,944 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-06T03:43:40,944 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,945 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-06T03:43:40,946 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,946 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-06T03:43:40,947 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,948 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-06T03:43:40,948 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/23/eb/83f7d6be1025085e7c29efc3a3d0e5ba1adab69b03202b425503da5e13b6/pirlygenes-2.3.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,950 Found link https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.0 2026-04-06T03:43:40,950 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/72/59/5cb1b74270e4b9f43f9db46affd988d079371b6a7fd5ac939bfd8a90550e/pirlygenes-2.3.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:40,951 Found link https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.1 2026-04-06T03:43:40,952 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T03:43:40,953 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T03:43:40,954 Found index url https://www.piwheels.org/simple 2026-04-06T03:43:41,124 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-06T03:43:41,128 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,129 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,129 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,130 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,130 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,131 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,131 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,132 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,133 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,133 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T03:43:41,134 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T03:43:41,135 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-06T03:43:41,157 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-06T03:43:41,176 Collecting pirlygenes==2.3.1 2026-04-06T03:43:41,178 Created temporary directory: /tmp/pip-unpack-l28ti4dh 2026-04-06T03:43:41,410 Downloading pirlygenes-2.3.1.tar.gz (673 kB) 2026-04-06T03:43:41,732 Added pirlygenes==2.3.1 from https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-29mxqcil' 2026-04-06T03:43:41,738 Created temporary directory: /tmp/pip-build-env-1dqw0epl 2026-04-06T03:43:41,742 Installing build dependencies: started 2026-04-06T03:43:41,744 Running command pip subprocess to install build dependencies 2026-04-06T03:43:41,775 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-06T03:43:41,815 Traceback (most recent call last): 2026-04-06T03:43:41,815 File "", line 192, in addpackage 2026-04-06T03:43:41,816 File "", line 1, in 2026-04-06T03:43:41,816 ModuleNotFoundError: No module named 'outofcuda' 2026-04-06T03:43:41,818 Remainder of file ignored 2026-04-06T03:43:42,916 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-06T03:43:43,333 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T03:43:43,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T03:43:45,146 Collecting setuptools>=60 2026-04-06T03:43:45,253 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-06T03:43:45,708 Collecting setuptools-scm>=8.0 2026-04-06T03:43:45,722 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-06T03:43:45,803 Collecting vcs-versioning>=1.0.0.dev0 2026-04-06T03:43:45,819 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-06T03:43:46,001 Collecting packaging>=20 2026-04-06T03:43:46,017 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-06T03:43:49,031 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-06T03:43:52,694 Creating /tmp/pip-build-env-1dqw0epl/overlay/local/bin 2026-04-06T03:43:52,696 changing mode of /tmp/pip-build-env-1dqw0epl/overlay/local/bin/vcs-versioning to 755 2026-04-06T03:43:52,808 changing mode of /tmp/pip-build-env-1dqw0epl/overlay/local/bin/setuptools-scm to 755 2026-04-06T03:43:52,837 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-06T03:43:53,120 Installing build dependencies: finished with status 'done' 2026-04-06T03:43:53,136 Getting requirements to build wheel: started 2026-04-06T03:43:53,137 Running command Getting requirements to build wheel 2026-04-06T03:43:53,830 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T03:43:53,945 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:53,945 !! 2026-04-06T03:43:53,946 ******************************************************************************** 2026-04-06T03:43:53,947 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:53,948 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:53,949 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:53,950 ******************************************************************************** 2026-04-06T03:43:53,951 !! 2026-04-06T03:43:53,952 dist._finalize_license_expression() 2026-04-06T03:43:53,953 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:53,953 !! 2026-04-06T03:43:53,955 ******************************************************************************** 2026-04-06T03:43:53,956 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:53,957 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:53,958 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:53,959 ******************************************************************************** 2026-04-06T03:43:53,961 !! 2026-04-06T03:43:53,961 self._finalize_license_expression() 2026-04-06T03:43:53,962 running egg_info 2026-04-06T03:43:53,968 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T03:43:53,972 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T03:43:53,974 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T03:43:53,975 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T03:43:53,977 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T03:43:54,020 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T03:43:54,020 return get_active_overrides().subprocess_timeout 2026-04-06T03:43:54,028 listing git files failed - pretending there aren't any 2026-04-06T03:43:54,038 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:54,047 adding license file 'LICENSE' 2026-04-06T03:43:54,052 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:54,156 Getting requirements to build wheel: finished with status 'done' 2026-04-06T03:43:54,159 Created temporary directory: /tmp/pip-modern-metadata-cxr6l9bb 2026-04-06T03:43:54,162 Preparing metadata (pyproject.toml): started 2026-04-06T03:43:54,163 Running command Preparing metadata (pyproject.toml) 2026-04-06T03:43:54,775 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T03:43:54,883 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:54,884 !! 2026-04-06T03:43:54,885 ******************************************************************************** 2026-04-06T03:43:54,886 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:54,887 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:54,888 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:54,889 ******************************************************************************** 2026-04-06T03:43:54,890 !! 2026-04-06T03:43:54,891 dist._finalize_license_expression() 2026-04-06T03:43:54,891 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:54,892 !! 2026-04-06T03:43:54,893 ******************************************************************************** 2026-04-06T03:43:54,894 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:54,895 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:54,896 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:54,896 ******************************************************************************** 2026-04-06T03:43:54,898 !! 2026-04-06T03:43:54,898 self._finalize_license_expression() 2026-04-06T03:43:54,899 running dist_info 2026-04-06T03:43:54,913 creating /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info 2026-04-06T03:43:54,914 writing /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/PKG-INFO 2026-04-06T03:43:54,918 writing dependency_links to /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/dependency_links.txt 2026-04-06T03:43:54,920 writing entry points to /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/entry_points.txt 2026-04-06T03:43:54,921 writing requirements to /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/requires.txt 2026-04-06T03:43:54,922 writing top-level names to /tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/top_level.txt 2026-04-06T03:43:54,924 writing manifest file '/tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:54,961 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T03:43:54,962 return get_active_overrides().subprocess_timeout 2026-04-06T03:43:54,968 listing git files failed - pretending there aren't any 2026-04-06T03:43:54,976 reading manifest file '/tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:54,978 adding license file 'LICENSE' 2026-04-06T03:43:54,982 writing manifest file '/tmp/pip-modern-metadata-cxr6l9bb/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:54,983 creating '/tmp/pip-modern-metadata-cxr6l9bb/pirlygenes-2.3.1.dist-info' 2026-04-06T03:43:55,118 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-06T03:43:55,123 Source in /tmp/pip-wheel-7zc2mwbd/pirlygenes_4f00c169221b43bcbad1a72db53b7b94 has version 2.3.1, which satisfies requirement pirlygenes==2.3.1 from https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz 2026-04-06T03:43:55,124 Removed pirlygenes==2.3.1 from https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-29mxqcil' 2026-04-06T03:43:55,130 Created temporary directory: /tmp/pip-unpack-jz73ncq4 2026-04-06T03:43:55,131 Building wheels for collected packages: pirlygenes 2026-04-06T03:43:55,136 Created temporary directory: /tmp/pip-wheel-jzm94lm0 2026-04-06T03:43:55,137 Destination directory: /tmp/pip-wheel-jzm94lm0 2026-04-06T03:43:55,139 Building wheel for pirlygenes (pyproject.toml): started 2026-04-06T03:43:55,141 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-06T03:43:55,742 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T03:43:55,843 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:55,844 !! 2026-04-06T03:43:55,845 ******************************************************************************** 2026-04-06T03:43:55,845 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:55,847 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:55,848 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:55,848 ******************************************************************************** 2026-04-06T03:43:55,850 !! 2026-04-06T03:43:55,850 dist._finalize_license_expression() 2026-04-06T03:43:55,851 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T03:43:55,851 !! 2026-04-06T03:43:55,853 ******************************************************************************** 2026-04-06T03:43:55,853 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T03:43:55,854 License :: OSI Approved :: Apache Software License 2026-04-06T03:43:55,856 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T03:43:55,856 ******************************************************************************** 2026-04-06T03:43:55,858 !! 2026-04-06T03:43:55,859 self._finalize_license_expression() 2026-04-06T03:43:55,859 running bdist_wheel 2026-04-06T03:43:55,878 running build 2026-04-06T03:43:55,878 running build_py 2026-04-06T03:43:55,880 creating build/lib/pirlygenes 2026-04-06T03:43:55,882 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-06T03:43:55,884 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-06T03:43:55,886 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-06T03:43:55,888 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-06T03:43:55,890 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-06T03:43:55,892 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-06T03:43:55,895 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-06T03:43:55,897 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-06T03:43:55,900 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-06T03:43:55,902 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-06T03:43:55,904 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-06T03:43:55,906 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-06T03:43:55,908 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-06T03:43:55,911 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-06T03:43:55,912 running egg_info 2026-04-06T03:43:55,927 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T03:43:55,930 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T03:43:55,932 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T03:43:55,933 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T03:43:55,934 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T03:43:55,964 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T03:43:55,965 return get_active_overrides().subprocess_timeout 2026-04-06T03:43:55,971 listing git files failed - pretending there aren't any 2026-04-06T03:43:55,979 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:55,984 adding license file 'LICENSE' 2026-04-06T03:43:55,989 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T03:43:55,992 /tmp/pip-build-env-1dqw0epl/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-06T03:43:55,993 !! 2026-04-06T03:43:55,994 ******************************************************************************** 2026-04-06T03:43:55,995 ############################ 2026-04-06T03:43:55,995 # Package would be ignored # 2026-04-06T03:43:55,996 ############################ 2026-04-06T03:43:55,996 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-06T03:43:55,997 but it is absent from setuptools' `packages` configuration. 2026-04-06T03:43:55,998 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-06T03:43:55,999 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-06T03:43:55,999 to the `packages` configuration field. 2026-04-06T03:43:56,000 Alternatively, you can also rely on setuptools' discovery methods 2026-04-06T03:43:56,001 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-06T03:43:56,001 instead of `find_packages(...)`/`find:`). 2026-04-06T03:43:56,002 You can read more about "package discovery" on setuptools documentation page: 2026-04-06T03:43:56,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-06T03:43:56,005 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-06T03:43:56,005 already explicitly excluding 'pirlygenes.data' via 2026-04-06T03:43:56,005 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-06T03:43:56,006 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-06T03:43:56,007 combination with a more fine grained `package-data` configuration. 2026-04-06T03:43:56,008 You can read more about "package data files" on setuptools documentation page: 2026-04-06T03:43:56,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-06T03:43:56,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-06T03:43:56,010 even if it does not contain any `.py` files. 2026-04-06T03:43:56,011 On the other hand, currently there is no concept of package data 2026-04-06T03:43:56,011 directory, all directories are treated like packages. 2026-04-06T03:43:56,012 ******************************************************************************** 2026-04-06T03:43:56,013 !! 2026-04-06T03:43:56,013 check.warn(importable) 2026-04-06T03:43:56,014 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-06T03:43:56,014 creating build/lib/pirlygenes/data 2026-04-06T03:43:56,014 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,015 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,015 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,016 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,016 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,017 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,019 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,022 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,025 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,029 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,033 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,035 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,037 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,039 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,042 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-06T03:43:56,059 installing to build/bdist.linux-armv7l/wheel 2026-04-06T03:43:56,060 running install 2026-04-06T03:43:56,084 running install_lib 2026-04-06T03:43:56,093 creating build/bdist.linux-armv7l/wheel 2026-04-06T03:43:56,095 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-06T03:43:56,096 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,098 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,100 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,102 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,104 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,107 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-06T03:43:56,108 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,112 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,115 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,117 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,118 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,120 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,122 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,124 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,126 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,129 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,131 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,132 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,135 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,138 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,140 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T03:43:56,142 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,145 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,147 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,150 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,152 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,154 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,156 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,159 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,161 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,164 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T03:43:56,165 running install_egg_info 2026-04-06T03:43:56,174 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.3.1-py3.11.egg-info 2026-04-06T03:43:56,187 running install_scripts 2026-04-06T03:43:56,200 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.3.1.dist-info/WHEEL 2026-04-06T03:43:56,204 creating '/tmp/pip-wheel-jzm94lm0/.tmp-4x6n27ii/pirlygenes-2.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-06T03:43:56,206 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-06T03:43:56,208 adding 'pirlygenes/__init__.py' 2026-04-06T03:43:56,209 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-06T03:43:56,211 adding 'pirlygenes/cli.py' 2026-04-06T03:43:56,212 adding 'pirlygenes/common.py' 2026-04-06T03:43:56,214 adding 'pirlygenes/gene_ids.py' 2026-04-06T03:43:56,215 adding 'pirlygenes/gene_names.py' 2026-04-06T03:43:56,218 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-06T03:43:56,220 adding 'pirlygenes/gene_sets_old.py' 2026-04-06T03:43:56,221 adding 'pirlygenes/load_dataset.py' 2026-04-06T03:43:56,223 adding 'pirlygenes/load_expression.py' 2026-04-06T03:43:56,225 adding 'pirlygenes/plot.py' 2026-04-06T03:43:56,227 adding 'pirlygenes/plot_data_helpers.py' 2026-04-06T03:43:56,228 adding 'pirlygenes/transcript_to_gene.py' 2026-04-06T03:43:56,230 adding 'pirlygenes/version.py' 2026-04-06T03:43:56,232 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-06T03:43:56,236 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-06T03:43:56,238 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-06T03:43:56,239 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-06T03:43:56,240 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-06T03:43:56,244 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-06T03:43:56,245 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-06T03:43:56,251 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-06T03:43:56,253 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-06T03:43:56,259 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-06T03:43:56,261 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-06T03:43:56,263 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-06T03:43:56,264 adding 'pirlygenes/data/interferon-response.csv' 2026-04-06T03:43:56,266 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-06T03:43:56,267 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-06T03:43:56,271 adding 'pirlygenes-2.3.1.dist-info/licenses/LICENSE' 2026-04-06T03:43:56,273 adding 'pirlygenes-2.3.1.dist-info/METADATA' 2026-04-06T03:43:56,274 adding 'pirlygenes-2.3.1.dist-info/WHEEL' 2026-04-06T03:43:56,275 adding 'pirlygenes-2.3.1.dist-info/entry_points.txt' 2026-04-06T03:43:56,276 adding 'pirlygenes-2.3.1.dist-info/top_level.txt' 2026-04-06T03:43:56,277 adding 'pirlygenes-2.3.1.dist-info/RECORD' 2026-04-06T03:43:56,279 removing build/bdist.linux-armv7l/wheel 2026-04-06T03:43:56,393 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-06T03:43:56,400 Created wheel for pirlygenes: filename=pirlygenes-2.3.1-py3-none-any.whl size=93662 sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 2026-04-06T03:43:56,402 Stored in directory: /tmp/pip-ephem-wheel-cache-mn384sz2/wheels/ec/5b/5c/6b50e676b9dc5943ed34991b4788fb119f0f7690456829d5a4 2026-04-06T03:43:56,416 Successfully built pirlygenes 2026-04-06T03:43:56,422 Removed build tracker: '/tmp/pip-build-tracker-29mxqcil'