2026-04-06T14:03:31,807 Created temporary directory: /tmp/pip-ephem-wheel-cache-u0ksrjel 2026-04-06T14:03:31,809 Created temporary directory: /tmp/pip-build-tracker-p3no8ib_ 2026-04-06T14:03:31,810 Initialized build tracking at /tmp/pip-build-tracker-p3no8ib_ 2026-04-06T14:03:31,810 Created build tracker: /tmp/pip-build-tracker-p3no8ib_ 2026-04-06T14:03:31,811 Entered build tracker: /tmp/pip-build-tracker-p3no8ib_ 2026-04-06T14:03:31,812 Created temporary directory: /tmp/pip-wheel-p93zqugj 2026-04-06T14:03:31,815 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T14:03:31,817 Created temporary directory: /tmp/pip-ephem-wheel-cache-5no6dypc 2026-04-06T14:03:31,839 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T14:03:31,843 2 location(s) to search for versions of pirlygenes: 2026-04-06T14:03:31,843 * https://pypi.org/simple/pirlygenes/ 2026-04-06T14:03:31,843 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T14:03:31,844 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-06T14:03:31,844 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-06T14:03:31,846 Found index url https://pypi.org/simple 2026-04-06T14:03:32,070 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-06T14:03:32,076 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,077 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-06T14:03:32,078 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,079 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-06T14:03:32,080 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,081 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-06T14:03:32,082 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,083 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-06T14:03:32,084 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,085 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-06T14:03:32,086 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,086 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-06T14:03:32,087 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,088 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-06T14:03:32,088 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,089 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-06T14:03:32,090 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,091 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-06T14:03:32,091 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/23/eb/83f7d6be1025085e7c29efc3a3d0e5ba1adab69b03202b425503da5e13b6/pirlygenes-2.3.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,092 Found link https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.0 2026-04-06T14:03:32,093 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/72/59/5cb1b74270e4b9f43f9db46affd988d079371b6a7fd5ac939bfd8a90550e/pirlygenes-2.3.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,094 Found link https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.1 2026-04-06T14:03:32,095 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,096 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-06T14:03:32,096 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,097 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.0 2026-04-06T14:03:32,098 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/03/65/848fbf13686f897447a15f7253d01911214fcbdcf291f647e00c00f9fdbb/pirlygenes-2.4.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,099 Found link https://files.pythonhosted.org/packages/45/7f/c57a8646cfb684413ba4687e8c8727cbe8dd7debc4a84bf211a9e5ffeaa5/pirlygenes-2.4.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.1 2026-04-06T14:03:32,099 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T14:03:32,100 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T14:03:32,101 Found index url https://www.piwheels.org/simple 2026-04-06T14:03:32,283 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-06T14:03:32,287 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,287 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,288 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,289 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,289 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,290 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,291 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,291 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,292 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,292 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,293 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-06T14:03:32,294 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-06T14:03:32,294 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-06T14:03:32,316 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-06T14:03:32,336 Collecting pirlygenes==2.3.2 2026-04-06T14:03:32,338 Created temporary directory: /tmp/pip-unpack-nkkam35i 2026-04-06T14:03:32,567 Downloading pirlygenes-2.3.2.tar.gz (673 kB) 2026-04-06T14:03:32,874 Added pirlygenes==2.3.2 from https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-p3no8ib_' 2026-04-06T14:03:32,880 Created temporary directory: /tmp/pip-build-env-0zua8sp1 2026-04-06T14:03:32,884 Installing build dependencies: started 2026-04-06T14:03:32,886 Running command pip subprocess to install build dependencies 2026-04-06T14:03:34,021 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-06T14:03:34,512 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-06T14:03:34,535 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-06T14:03:36,331 Collecting setuptools>=60 2026-04-06T14:03:36,423 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-06T14:03:36,807 Collecting setuptools-scm>=8.0 2026-04-06T14:03:36,826 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-06T14:03:36,913 Collecting vcs-versioning>=1.0.0.dev0 2026-04-06T14:03:36,932 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-06T14:03:37,112 Collecting packaging>=20 2026-04-06T14:03:37,133 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-06T14:03:40,142 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-06T14:03:43,772 Creating /tmp/pip-build-env-0zua8sp1/overlay/local/bin 2026-04-06T14:03:43,774 changing mode of /tmp/pip-build-env-0zua8sp1/overlay/local/bin/vcs-versioning to 755 2026-04-06T14:03:43,889 changing mode of /tmp/pip-build-env-0zua8sp1/overlay/local/bin/setuptools-scm to 755 2026-04-06T14:03:43,916 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-06T14:03:44,202 Installing build dependencies: finished with status 'done' 2026-04-06T14:03:44,220 Getting requirements to build wheel: started 2026-04-06T14:03:44,221 Running command Getting requirements to build wheel 2026-04-06T14:03:44,893 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T14:03:45,011 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:45,011 !! 2026-04-06T14:03:45,012 ******************************************************************************** 2026-04-06T14:03:45,013 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:45,014 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:45,015 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:45,015 ******************************************************************************** 2026-04-06T14:03:45,016 !! 2026-04-06T14:03:45,016 dist._finalize_license_expression() 2026-04-06T14:03:45,017 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:45,017 !! 2026-04-06T14:03:45,019 ******************************************************************************** 2026-04-06T14:03:45,019 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:45,020 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:45,021 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:45,022 ******************************************************************************** 2026-04-06T14:03:45,023 !! 2026-04-06T14:03:45,023 self._finalize_license_expression() 2026-04-06T14:03:45,026 running egg_info 2026-04-06T14:03:45,034 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T14:03:45,038 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T14:03:45,040 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T14:03:45,042 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T14:03:45,043 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T14:03:45,084 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T14:03:45,085 return get_active_overrides().subprocess_timeout 2026-04-06T14:03:45,092 listing git files failed - pretending there aren't any 2026-04-06T14:03:45,102 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:45,110 adding license file 'LICENSE' 2026-04-06T14:03:45,115 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:45,220 Getting requirements to build wheel: finished with status 'done' 2026-04-06T14:03:45,224 Created temporary directory: /tmp/pip-modern-metadata-1awfzc0v 2026-04-06T14:03:45,227 Preparing metadata (pyproject.toml): started 2026-04-06T14:03:45,228 Running command Preparing metadata (pyproject.toml) 2026-04-06T14:03:45,856 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T14:03:45,971 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:45,972 !! 2026-04-06T14:03:45,973 ******************************************************************************** 2026-04-06T14:03:45,973 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:45,974 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:45,976 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:45,976 ******************************************************************************** 2026-04-06T14:03:45,977 !! 2026-04-06T14:03:45,978 dist._finalize_license_expression() 2026-04-06T14:03:45,979 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:45,979 !! 2026-04-06T14:03:45,980 ******************************************************************************** 2026-04-06T14:03:45,981 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:45,982 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:45,983 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:45,983 ******************************************************************************** 2026-04-06T14:03:45,984 !! 2026-04-06T14:03:45,985 self._finalize_license_expression() 2026-04-06T14:03:45,986 running dist_info 2026-04-06T14:03:46,001 creating /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info 2026-04-06T14:03:46,002 writing /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/PKG-INFO 2026-04-06T14:03:46,006 writing dependency_links to /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/dependency_links.txt 2026-04-06T14:03:46,008 writing entry points to /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/entry_points.txt 2026-04-06T14:03:46,009 writing requirements to /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/requires.txt 2026-04-06T14:03:46,010 writing top-level names to /tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/top_level.txt 2026-04-06T14:03:46,012 writing manifest file '/tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:46,049 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T14:03:46,050 return get_active_overrides().subprocess_timeout 2026-04-06T14:03:46,056 listing git files failed - pretending there aren't any 2026-04-06T14:03:46,064 reading manifest file '/tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:46,066 adding license file 'LICENSE' 2026-04-06T14:03:46,070 writing manifest file '/tmp/pip-modern-metadata-1awfzc0v/pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:46,071 creating '/tmp/pip-modern-metadata-1awfzc0v/pirlygenes-2.3.2.dist-info' 2026-04-06T14:03:46,206 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-06T14:03:46,212 Source in /tmp/pip-wheel-p93zqugj/pirlygenes_c9d17b7e78894c9d8d64527ff6b444b8 has version 2.3.2, which satisfies requirement pirlygenes==2.3.2 from https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz 2026-04-06T14:03:46,213 Removed pirlygenes==2.3.2 from https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-p3no8ib_' 2026-04-06T14:03:46,219 Created temporary directory: /tmp/pip-unpack-f24spxlk 2026-04-06T14:03:46,220 Building wheels for collected packages: pirlygenes 2026-04-06T14:03:46,225 Created temporary directory: /tmp/pip-wheel-_ze50ytj 2026-04-06T14:03:46,225 Destination directory: /tmp/pip-wheel-_ze50ytj 2026-04-06T14:03:46,228 Building wheel for pirlygenes (pyproject.toml): started 2026-04-06T14:03:46,229 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-06T14:03:46,841 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-06T14:03:46,946 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:46,946 !! 2026-04-06T14:03:46,947 ******************************************************************************** 2026-04-06T14:03:46,948 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:46,949 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:46,950 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:46,950 ******************************************************************************** 2026-04-06T14:03:46,951 !! 2026-04-06T14:03:46,952 dist._finalize_license_expression() 2026-04-06T14:03:46,952 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-06T14:03:46,953 !! 2026-04-06T14:03:46,954 ******************************************************************************** 2026-04-06T14:03:46,954 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-06T14:03:46,955 License :: OSI Approved :: Apache Software License 2026-04-06T14:03:46,956 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-06T14:03:46,956 ******************************************************************************** 2026-04-06T14:03:46,957 !! 2026-04-06T14:03:46,958 self._finalize_license_expression() 2026-04-06T14:03:46,958 running bdist_wheel 2026-04-06T14:03:46,983 running build 2026-04-06T14:03:46,983 running build_py 2026-04-06T14:03:46,985 creating build/lib/pirlygenes 2026-04-06T14:03:46,988 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-06T14:03:46,990 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-06T14:03:46,992 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-06T14:03:46,994 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-06T14:03:46,996 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-06T14:03:46,999 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-06T14:03:47,001 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-06T14:03:47,003 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-06T14:03:47,006 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-06T14:03:47,008 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-06T14:03:47,010 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-06T14:03:47,012 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-06T14:03:47,014 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-06T14:03:47,016 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-06T14:03:47,018 running egg_info 2026-04-06T14:03:47,034 writing pirlygenes.egg-info/PKG-INFO 2026-04-06T14:03:47,037 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-06T14:03:47,038 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-06T14:03:47,040 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-06T14:03:47,041 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-06T14:03:47,070 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-06T14:03:47,071 return get_active_overrides().subprocess_timeout 2026-04-06T14:03:47,077 listing git files failed - pretending there aren't any 2026-04-06T14:03:47,084 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:47,090 adding license file 'LICENSE' 2026-04-06T14:03:47,094 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-06T14:03:47,097 /tmp/pip-build-env-0zua8sp1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-06T14:03:47,098 !! 2026-04-06T14:03:47,099 ******************************************************************************** 2026-04-06T14:03:47,099 ############################ 2026-04-06T14:03:47,100 # Package would be ignored # 2026-04-06T14:03:47,100 ############################ 2026-04-06T14:03:47,100 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-06T14:03:47,101 but it is absent from setuptools' `packages` configuration. 2026-04-06T14:03:47,102 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-06T14:03:47,102 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-06T14:03:47,103 to the `packages` configuration field. 2026-04-06T14:03:47,104 Alternatively, you can also rely on setuptools' discovery methods 2026-04-06T14:03:47,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-06T14:03:47,104 instead of `find_packages(...)`/`find:`). 2026-04-06T14:03:47,105 You can read more about "package discovery" on setuptools documentation page: 2026-04-06T14:03:47,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-06T14:03:47,107 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-06T14:03:47,108 already explicitly excluding 'pirlygenes.data' via 2026-04-06T14:03:47,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-06T14:03:47,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-06T14:03:47,109 combination with a more fine grained `package-data` configuration. 2026-04-06T14:03:47,110 You can read more about "package data files" on setuptools documentation page: 2026-04-06T14:03:47,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-06T14:03:47,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-06T14:03:47,114 even if it does not contain any `.py` files. 2026-04-06T14:03:47,114 On the other hand, currently there is no concept of package data 2026-04-06T14:03:47,115 directory, all directories are treated like packages. 2026-04-06T14:03:47,115 ******************************************************************************** 2026-04-06T14:03:47,116 !! 2026-04-06T14:03:47,117 check.warn(importable) 2026-04-06T14:03:47,117 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-06T14:03:47,118 creating build/lib/pirlygenes/data 2026-04-06T14:03:47,118 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,119 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,119 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,120 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,120 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,121 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,123 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,125 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,129 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,133 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,137 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,139 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,141 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,143 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,146 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-06T14:03:47,163 installing to build/bdist.linux-armv7l/wheel 2026-04-06T14:03:47,164 running install 2026-04-06T14:03:47,187 running install_lib 2026-04-06T14:03:47,196 creating build/bdist.linux-armv7l/wheel 2026-04-06T14:03:47,198 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-06T14:03:47,199 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,201 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,213 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,215 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,217 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,220 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-06T14:03:47,221 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,223 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,225 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,228 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,230 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,232 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,235 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,237 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,239 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,242 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,244 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,248 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,250 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,252 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,254 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-06T14:03:47,256 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,258 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,261 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,263 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,266 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,268 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,270 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,272 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,274 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,276 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-06T14:03:47,278 running install_egg_info 2026-04-06T14:03:47,285 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.3.2-py3.11.egg-info 2026-04-06T14:03:47,297 running install_scripts 2026-04-06T14:03:47,310 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.3.2.dist-info/WHEEL 2026-04-06T14:03:47,313 creating '/tmp/pip-wheel-_ze50ytj/.tmp-ifsgeqm8/pirlygenes-2.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-06T14:03:47,316 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-06T14:03:47,317 adding 'pirlygenes/__init__.py' 2026-04-06T14:03:47,319 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-06T14:03:47,320 adding 'pirlygenes/cli.py' 2026-04-06T14:03:47,322 adding 'pirlygenes/common.py' 2026-04-06T14:03:47,323 adding 'pirlygenes/gene_ids.py' 2026-04-06T14:03:47,325 adding 'pirlygenes/gene_names.py' 2026-04-06T14:03:47,327 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-06T14:03:47,329 adding 'pirlygenes/gene_sets_old.py' 2026-04-06T14:03:47,330 adding 'pirlygenes/load_dataset.py' 2026-04-06T14:03:47,332 adding 'pirlygenes/load_expression.py' 2026-04-06T14:03:47,334 adding 'pirlygenes/plot.py' 2026-04-06T14:03:47,336 adding 'pirlygenes/plot_data_helpers.py' 2026-04-06T14:03:47,338 adding 'pirlygenes/transcript_to_gene.py' 2026-04-06T14:03:47,339 adding 'pirlygenes/version.py' 2026-04-06T14:03:47,341 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-06T14:03:47,345 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-06T14:03:47,347 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-06T14:03:47,348 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-06T14:03:47,350 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-06T14:03:47,353 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-06T14:03:47,354 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-06T14:03:47,359 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-06T14:03:47,362 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-06T14:03:47,368 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-06T14:03:47,371 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-06T14:03:47,372 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-06T14:03:47,373 adding 'pirlygenes/data/interferon-response.csv' 2026-04-06T14:03:47,375 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-06T14:03:47,376 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-06T14:03:47,380 adding 'pirlygenes-2.3.2.dist-info/licenses/LICENSE' 2026-04-06T14:03:47,382 adding 'pirlygenes-2.3.2.dist-info/METADATA' 2026-04-06T14:03:47,383 adding 'pirlygenes-2.3.2.dist-info/WHEEL' 2026-04-06T14:03:47,384 adding 'pirlygenes-2.3.2.dist-info/entry_points.txt' 2026-04-06T14:03:47,386 adding 'pirlygenes-2.3.2.dist-info/top_level.txt' 2026-04-06T14:03:47,387 adding 'pirlygenes-2.3.2.dist-info/RECORD' 2026-04-06T14:03:47,390 removing build/bdist.linux-armv7l/wheel 2026-04-06T14:03:47,505 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-06T14:03:47,511 Created wheel for pirlygenes: filename=pirlygenes-2.3.2-py3-none-any.whl size=93633 sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f 2026-04-06T14:03:47,512 Stored in directory: /tmp/pip-ephem-wheel-cache-5no6dypc/wheels/8c/2f/3c/8fb2e72cd613fcb36d6d21a8b9e74afa7c9dda2acafd3623e0 2026-04-06T14:03:47,526 Successfully built pirlygenes 2026-04-06T14:03:47,532 Removed build tracker: '/tmp/pip-build-tracker-p3no8ib_'