2026-04-07T05:08:20,484 Created temporary directory: /tmp/pip-ephem-wheel-cache-all05dt_ 2026-04-07T05:08:20,486 Created temporary directory: /tmp/pip-build-tracker-lpp2es8_ 2026-04-07T05:08:20,486 Initialized build tracking at /tmp/pip-build-tracker-lpp2es8_ 2026-04-07T05:08:20,487 Created build tracker: /tmp/pip-build-tracker-lpp2es8_ 2026-04-07T05:08:20,487 Entered build tracker: /tmp/pip-build-tracker-lpp2es8_ 2026-04-07T05:08:20,488 Created temporary directory: /tmp/pip-wheel-5ces4yh7 2026-04-07T05:08:20,491 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T05:08:20,494 Created temporary directory: /tmp/pip-ephem-wheel-cache-dgadpsi_ 2026-04-07T05:08:20,515 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T05:08:20,519 2 location(s) to search for versions of robokop-genetics: 2026-04-07T05:08:20,519 * https://pypi.org/simple/robokop-genetics/ 2026-04-07T05:08:20,519 * https://www.piwheels.org/simple/robokop-genetics/ 2026-04-07T05:08:20,520 Fetching project page and analyzing links: https://pypi.org/simple/robokop-genetics/ 2026-04-07T05:08:20,520 Getting page https://pypi.org/simple/robokop-genetics/ 2026-04-07T05:08:20,522 Found index url https://pypi.org/simple 2026-04-07T05:08:20,747 Fetched page https://pypi.org/simple/robokop-genetics/ as application/vnd.pypi.simple.v1+json 2026-04-07T05:08:20,750 Skipping link: No binaries permitted for robokop-genetics: https://files.pythonhosted.org/packages/a6/bf/db4bd7d8c1ce00811bfd32da8171f73866ed4fa45cd2f154b8c9bc227428/robokop_genetics-0.5.0-py3-none-any.whl (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:20,751 Found link https://files.pythonhosted.org/packages/1a/37/4499032b5d119bc593a843ff168054e507ba6016bb1cd9e254f6736d37fc/robokop_genetics-0.5.0.tar.gz (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9), version: 0.5.0 2026-04-07T05:08:20,752 Skipping link: No binaries permitted for robokop-genetics: https://files.pythonhosted.org/packages/6f/2f/75fd58f8d0e840c53d7840c6b50cbea36293f2037a14e776ad4180379150/robokop_genetics-0.6.2-py3-none-any.whl (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:20,753 Found link https://files.pythonhosted.org/packages/86/62/6912b264495a3c134cf3e33182b0314db7ad00ebb5200d546e67a622f337/robokop_genetics-0.6.2.tar.gz (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9), version: 0.6.2 2026-04-07T05:08:20,754 Skipping link: No binaries permitted for robokop-genetics: https://files.pythonhosted.org/packages/7f/96/7e941b2ad392429aac56b0826965534e79edff20784eb767c702cab8fbef/robokop_genetics-0.7.0-py3-none-any.whl (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:20,755 Found link https://files.pythonhosted.org/packages/41/a6/75b9edf1186d3dbfb485910b40570ea9c7452ffce195934de2a40d17167f/robokop_genetics-0.7.0.tar.gz (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9), version: 0.7.0 2026-04-07T05:08:20,755 Skipping link: No binaries permitted for robokop-genetics: https://files.pythonhosted.org/packages/ae/e8/dd70c2cc4e0e076d31a0266aaeb710620d987016eddc65c84f2dee08d07f/robokop_genetics-0.8.0-py3-none-any.whl (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:20,756 Found link https://files.pythonhosted.org/packages/a7/17/063c21735ef3ce7fb5abb3d3c7bae122db37e45185ecec510bcab3dfb2b2/robokop_genetics-0.8.0.tar.gz (from https://pypi.org/simple/robokop-genetics/) (requires-python:>=3.9), version: 0.8.0 2026-04-07T05:08:20,757 Fetching project page and analyzing links: https://www.piwheels.org/simple/robokop-genetics/ 2026-04-07T05:08:20,758 Getting page https://www.piwheels.org/simple/robokop-genetics/ 2026-04-07T05:08:20,760 Found index url https://www.piwheels.org/simple 2026-04-07T05:08:21,137 Fetched page https://www.piwheels.org/simple/robokop-genetics/ as text/html 2026-04-07T05:08:21,139 Skipping link: No binaries permitted for robokop-genetics: https://archive1.piwheels.org/simple/robokop-genetics/robokop_genetics-0.7.0-py3-none-any.whl#sha256=5408f95b435dfbb4be870903026f8332a86b6890f69e8ffe5a66b9ee79f38f51 (from https://www.piwheels.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:21,140 Skipping link: No binaries permitted for robokop-genetics: https://archive1.piwheels.org/simple/robokop-genetics/robokop_genetics-0.6.2-py3-none-any.whl#sha256=ec27fd662758e77c6e61f176d54f14259f452a80cc8c97642ae86295657a8ad6 (from https://www.piwheels.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:21,140 Skipping link: No binaries permitted for robokop-genetics: https://archive1.piwheels.org/simple/robokop-genetics/robokop_genetics-0.5.0-py3-none-any.whl#sha256=a50421892c5a7ca0f1a0aa902c28104af1daf07acde5fbb526b20347747dcbd1 (from https://www.piwheels.org/simple/robokop-genetics/) (requires-python:>=3.9) 2026-04-07T05:08:21,141 Skipping link: not a file: https://www.piwheels.org/simple/robokop-genetics/ 2026-04-07T05:08:21,141 Skipping link: not a file: https://pypi.org/simple/robokop-genetics/ 2026-04-07T05:08:21,162 Given no hashes to check 1 links for project 'robokop-genetics': discarding no candidates 2026-04-07T05:08:21,181 Collecting robokop-genetics==0.8.0 2026-04-07T05:08:21,184 Created temporary directory: /tmp/pip-unpack-cc78mt22 2026-04-07T05:08:21,332 Downloading robokop_genetics-0.8.0.tar.gz (18 kB) 2026-04-07T05:08:21,398 Added robokop-genetics==0.8.0 from https://files.pythonhosted.org/packages/a7/17/063c21735ef3ce7fb5abb3d3c7bae122db37e45185ecec510bcab3dfb2b2/robokop_genetics-0.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-lpp2es8_' 2026-04-07T05:08:21,401 Created temporary directory: /tmp/pip-build-env-me72jknv 2026-04-07T05:08:21,405 Installing build dependencies: started 2026-04-07T05:08:21,407 Running command pip subprocess to install build dependencies 2026-04-07T05:08:22,570 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-07T05:08:22,982 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T05:08:23,005 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T05:08:24,767 Collecting setuptools 2026-04-07T05:08:24,856 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-07T05:08:27,842 Installing collected packages: setuptools 2026-04-07T05:08:30,977 Successfully installed setuptools-82.0.1 2026-04-07T05:08:31,244 Installing build dependencies: finished with status 'done' 2026-04-07T05:08:31,250 Getting requirements to build wheel: started 2026-04-07T05:08:31,252 Running command Getting requirements to build wheel 2026-04-07T05:08:31,832 /tmp/pip-build-env-me72jknv/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T05:08:31,832 !! 2026-04-07T05:08:31,833 ******************************************************************************** 2026-04-07T05:08:31,834 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T05:08:31,835 License :: OSI Approved :: MIT License 2026-04-07T05:08:31,837 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T05:08:31,837 ******************************************************************************** 2026-04-07T05:08:31,839 !! 2026-04-07T05:08:31,839 self._finalize_license_expression() 2026-04-07T05:08:31,856 running egg_info 2026-04-07T05:08:31,862 writing robokop_genetics.egg-info/PKG-INFO 2026-04-07T05:08:31,866 writing dependency_links to robokop_genetics.egg-info/dependency_links.txt 2026-04-07T05:08:31,868 writing requirements to robokop_genetics.egg-info/requires.txt 2026-04-07T05:08:31,869 writing top-level names to robokop_genetics.egg-info/top_level.txt 2026-04-07T05:08:31,896 reading manifest file 'robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:31,899 adding license file 'LICENSE' 2026-04-07T05:08:31,903 writing manifest file 'robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:31,992 Getting requirements to build wheel: finished with status 'done' 2026-04-07T05:08:31,995 Created temporary directory: /tmp/pip-modern-metadata-bqk89wjo 2026-04-07T05:08:31,998 Preparing metadata (pyproject.toml): started 2026-04-07T05:08:31,999 Running command Preparing metadata (pyproject.toml) 2026-04-07T05:08:32,538 /tmp/pip-build-env-me72jknv/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T05:08:32,538 !! 2026-04-07T05:08:32,539 ******************************************************************************** 2026-04-07T05:08:32,540 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T05:08:32,541 License :: OSI Approved :: MIT License 2026-04-07T05:08:32,542 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T05:08:32,543 ******************************************************************************** 2026-04-07T05:08:32,544 !! 2026-04-07T05:08:32,544 self._finalize_license_expression() 2026-04-07T05:08:32,565 running dist_info 2026-04-07T05:08:32,576 creating /tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info 2026-04-07T05:08:32,577 writing /tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/PKG-INFO 2026-04-07T05:08:32,580 writing dependency_links to /tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/dependency_links.txt 2026-04-07T05:08:32,581 writing requirements to /tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/requires.txt 2026-04-07T05:08:32,582 writing top-level names to /tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/top_level.txt 2026-04-07T05:08:32,584 writing manifest file '/tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:32,609 reading manifest file '/tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:32,611 adding license file 'LICENSE' 2026-04-07T05:08:32,614 writing manifest file '/tmp/pip-modern-metadata-bqk89wjo/robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:32,615 creating '/tmp/pip-modern-metadata-bqk89wjo/robokop_genetics-0.8.0.dist-info' 2026-04-07T05:08:32,737 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-07T05:08:32,742 Source in /tmp/pip-wheel-5ces4yh7/robokop-genetics_2688ea27262149859988fde279073719 has version 0.8.0, which satisfies requirement robokop-genetics==0.8.0 from https://files.pythonhosted.org/packages/a7/17/063c21735ef3ce7fb5abb3d3c7bae122db37e45185ecec510bcab3dfb2b2/robokop_genetics-0.8.0.tar.gz 2026-04-07T05:08:32,743 Removed robokop-genetics==0.8.0 from https://files.pythonhosted.org/packages/a7/17/063c21735ef3ce7fb5abb3d3c7bae122db37e45185ecec510bcab3dfb2b2/robokop_genetics-0.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-lpp2es8_' 2026-04-07T05:08:32,749 Created temporary directory: /tmp/pip-unpack-qwfg6ede 2026-04-07T05:08:32,749 Building wheels for collected packages: robokop-genetics 2026-04-07T05:08:32,754 Created temporary directory: /tmp/pip-wheel-he4lryan 2026-04-07T05:08:32,754 Destination directory: /tmp/pip-wheel-he4lryan 2026-04-07T05:08:32,757 Building wheel for robokop-genetics (pyproject.toml): started 2026-04-07T05:08:32,758 Running command Building wheel for robokop-genetics (pyproject.toml) 2026-04-07T05:08:33,281 /tmp/pip-build-env-me72jknv/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T05:08:33,282 !! 2026-04-07T05:08:33,283 ******************************************************************************** 2026-04-07T05:08:33,283 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T05:08:33,284 License :: OSI Approved :: MIT License 2026-04-07T05:08:33,285 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T05:08:33,285 ******************************************************************************** 2026-04-07T05:08:33,286 !! 2026-04-07T05:08:33,287 self._finalize_license_expression() 2026-04-07T05:08:33,308 running bdist_wheel 2026-04-07T05:08:33,335 running build 2026-04-07T05:08:33,336 running build_py 2026-04-07T05:08:33,345 creating build/lib/robokop_genetics 2026-04-07T05:08:33,347 copying robokop_genetics/__init__.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,348 copying robokop_genetics/simple_graph_components.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,350 copying robokop_genetics/util.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,352 copying robokop_genetics/genetics_cache.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,354 copying robokop_genetics/node_types.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,356 copying robokop_genetics/genetics_services.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,358 copying robokop_genetics/genetics_normalization.py -> build/lib/robokop_genetics 2026-04-07T05:08:33,361 creating build/lib/robokop_genetics/services 2026-04-07T05:08:33,362 copying robokop_genetics/services/__init__.py -> build/lib/robokop_genetics/services 2026-04-07T05:08:33,364 copying robokop_genetics/services/hgnc.py -> build/lib/robokop_genetics/services 2026-04-07T05:08:33,366 copying robokop_genetics/services/clingen.py -> build/lib/robokop_genetics/services 2026-04-07T05:08:33,368 copying robokop_genetics/services/ensembl.py -> build/lib/robokop_genetics/services 2026-04-07T05:08:33,384 installing to build/bdist.linux-armv7l/wheel 2026-04-07T05:08:33,385 running install 2026-04-07T05:08:33,408 running install_lib 2026-04-07T05:08:33,416 creating build/bdist.linux-armv7l/wheel 2026-04-07T05:08:33,418 creating build/bdist.linux-armv7l/wheel/robokop_genetics 2026-04-07T05:08:33,420 creating build/bdist.linux-armv7l/wheel/robokop_genetics/services 2026-04-07T05:08:33,421 copying build/lib/robokop_genetics/services/__init__.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics/services 2026-04-07T05:08:33,423 copying build/lib/robokop_genetics/services/hgnc.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics/services 2026-04-07T05:08:33,425 copying build/lib/robokop_genetics/services/clingen.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics/services 2026-04-07T05:08:33,427 copying build/lib/robokop_genetics/services/ensembl.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics/services 2026-04-07T05:08:33,430 copying build/lib/robokop_genetics/__init__.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,431 copying build/lib/robokop_genetics/simple_graph_components.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,433 copying build/lib/robokop_genetics/util.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,435 copying build/lib/robokop_genetics/genetics_cache.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,437 copying build/lib/robokop_genetics/node_types.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,439 copying build/lib/robokop_genetics/genetics_services.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,441 copying build/lib/robokop_genetics/genetics_normalization.py -> build/bdist.linux-armv7l/wheel/./robokop_genetics 2026-04-07T05:08:33,442 running install_egg_info 2026-04-07T05:08:33,462 running egg_info 2026-04-07T05:08:33,467 writing robokop_genetics.egg-info/PKG-INFO 2026-04-07T05:08:33,470 writing dependency_links to robokop_genetics.egg-info/dependency_links.txt 2026-04-07T05:08:33,471 writing requirements to robokop_genetics.egg-info/requires.txt 2026-04-07T05:08:33,472 writing top-level names to robokop_genetics.egg-info/top_level.txt 2026-04-07T05:08:33,481 reading manifest file 'robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:33,484 adding license file 'LICENSE' 2026-04-07T05:08:33,487 writing manifest file 'robokop_genetics.egg-info/SOURCES.txt' 2026-04-07T05:08:33,489 Copying robokop_genetics.egg-info to build/bdist.linux-armv7l/wheel/./robokop_genetics-0.8.0-py3.11.egg-info 2026-04-07T05:08:33,499 running install_scripts 2026-04-07T05:08:33,508 creating build/bdist.linux-armv7l/wheel/robokop_genetics-0.8.0.dist-info/WHEEL 2026-04-07T05:08:33,511 creating '/tmp/pip-wheel-he4lryan/.tmp-hflwx5ms/robokop_genetics-0.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-07T05:08:33,513 adding 'robokop_genetics/__init__.py' 2026-04-07T05:08:33,515 adding 'robokop_genetics/genetics_cache.py' 2026-04-07T05:08:33,517 adding 'robokop_genetics/genetics_normalization.py' 2026-04-07T05:08:33,518 adding 'robokop_genetics/genetics_services.py' 2026-04-07T05:08:33,519 adding 'robokop_genetics/node_types.py' 2026-04-07T05:08:33,521 adding 'robokop_genetics/simple_graph_components.py' 2026-04-07T05:08:33,522 adding 'robokop_genetics/util.py' 2026-04-07T05:08:33,524 adding 'robokop_genetics/services/__init__.py' 2026-04-07T05:08:33,526 adding 'robokop_genetics/services/clingen.py' 2026-04-07T05:08:33,528 adding 'robokop_genetics/services/ensembl.py' 2026-04-07T05:08:33,529 adding 'robokop_genetics/services/hgnc.py' 2026-04-07T05:08:33,532 adding 'robokop_genetics-0.8.0.dist-info/licenses/LICENSE' 2026-04-07T05:08:33,533 adding 'robokop_genetics-0.8.0.dist-info/METADATA' 2026-04-07T05:08:33,534 adding 'robokop_genetics-0.8.0.dist-info/WHEEL' 2026-04-07T05:08:33,535 adding 'robokop_genetics-0.8.0.dist-info/top_level.txt' 2026-04-07T05:08:33,536 adding 'robokop_genetics-0.8.0.dist-info/RECORD' 2026-04-07T05:08:33,538 removing build/bdist.linux-armv7l/wheel 2026-04-07T05:08:33,637 Building wheel for robokop-genetics (pyproject.toml): finished with status 'done' 2026-04-07T05:08:33,642 Created wheel for robokop-genetics: filename=robokop_genetics-0.8.0-py3-none-any.whl size=18313 sha256=54a67fce0c50b4669d95c391f22f16279ab0c2957e85e354698d4439cb25fbec 2026-04-07T05:08:33,643 Stored in directory: /tmp/pip-ephem-wheel-cache-dgadpsi_/wheels/8b/bf/2f/87fecb5b6193b565a41ed2e8ca496a0fae9702b3376be9a9f4 2026-04-07T05:08:33,653 Successfully built robokop-genetics 2026-04-07T05:08:33,657 Removed build tracker: '/tmp/pip-build-tracker-lpp2es8_'