2026-04-07T10:14:49,919 Created temporary directory: /tmp/pip-ephem-wheel-cache-2maf38y2
2026-04-07T10:14:49,921 Created temporary directory: /tmp/pip-build-tracker-oaaizxun
2026-04-07T10:14:49,921 Initialized build tracking at /tmp/pip-build-tracker-oaaizxun
2026-04-07T10:14:49,922 Created build tracker: /tmp/pip-build-tracker-oaaizxun
2026-04-07T10:14:49,922 Entered build tracker: /tmp/pip-build-tracker-oaaizxun
2026-04-07T10:14:49,923 Created temporary directory: /tmp/pip-wheel-9s74xlhn
2026-04-07T10:14:49,926 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-07T10:14:49,929 Created temporary directory: /tmp/pip-ephem-wheel-cache-nf6_21v8
2026-04-07T10:14:49,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-07T10:14:49,954 2 location(s) to search for versions of scipion-em-tomo:
2026-04-07T10:14:49,954 * https://pypi.org/simple/scipion-em-tomo/
2026-04-07T10:14:49,954 * https://www.piwheels.org/simple/scipion-em-tomo/
2026-04-07T10:14:49,955 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo/
2026-04-07T10:14:49,956 Getting page https://pypi.org/simple/scipion-em-tomo/
2026-04-07T10:14:49,957 Found index url https://pypi.org/simple
2026-04-07T10:14:50,188 Fetched page https://pypi.org/simple/scipion-em-tomo/ as application/vnd.pypi.simple.v1+json
2026-04-07T10:14:50,203   Found link https://files.pythonhosted.org/packages/4b/4c/5b70aecaa1ac9210c87ace96840ea974ccd610a88008cb14ad1274ccb307/scipion-em-tomo-0.0.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 0.0.1
2026-04-07T10:14:50,204   Found link https://files.pythonhosted.org/packages/64/5d/767f112679414c6fc0068867f3a600f2e1d2be0b39b70902d21ae0d8b6bb/scipion-em-tomo-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.0
2026-04-07T10:14:50,205   Found link https://files.pythonhosted.org/packages/89/b7/09e587c8eebf58e9d466cd4f03dc25961c43aec8cb28a16b905b9a184dbe/scipion-em-tomo-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.2
2026-04-07T10:14:50,206   Found link https://files.pythonhosted.org/packages/ee/b3/696e070fef608e88eac8cbfbb6751cc4a6ffb6b0da0f7ab95d5c8bac77eb/scipion-em-tomo-3.0.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.4
2026-04-07T10:14:50,206   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c9/6a/d73fa696ec196b9920750e18e346f24f251d5563427b335dde8418050d60/scipion_em_tomo-3.0.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,207   Found link https://files.pythonhosted.org/packages/1e/79/1fe5055e381bc7efc7a2326c4fb955d3bfad453b43f65a3e4c321aaacade/scipion-em-tomo-3.0.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.5
2026-04-07T10:14:50,208   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/f1/07/cd52d74299dbbc1f12a5c91a690482728f8df411325608f9d496ddaa2873/scipion_em_tomo-3.0.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,209   Found link https://files.pythonhosted.org/packages/7d/7e/82239c4147b00b92b5d8569e693c1b65319faebe69724d9d42c3e2d1d02b/scipion-em-tomo-3.0.6.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.6
2026-04-07T10:14:50,210   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c1/2c/2b352785ef9211e1666d3849e35b1705b4a7a3f0c22a7881b65c8bc8aef0/scipion_em_tomo-3.0.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,210   Found link https://files.pythonhosted.org/packages/48/1b/218c21edfe5a3e136b5cb310cb2a79795c0d9e282cff00262057a7595d5a/scipion-em-tomo-3.0.7.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.7
2026-04-07T10:14:50,211   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/71/b0/fd5ce9ecbf5006136e2af54c1174acefe8496140a5665e270e8e68f34748/scipion_em_tomo-3.0.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,212   Found link https://files.pythonhosted.org/packages/09/7f/12c990023ae8f1514968476800cf90017bb578f5747fd1d2a64e133b7e27/scipion-em-tomo-3.0.8.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.8
2026-04-07T10:14:50,213   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d9/64/6b4b1293fe099422194d59ccf5a12375e481030341e8ddbdb198b8247d04/scipion_em_tomo-3.0.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,213   Found link https://files.pythonhosted.org/packages/68/74/7bdf7f0557e323371550c0a64e241512ecc24784abcf9e75338e4fbf94a5/scipion-em-tomo-3.0.9.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.9
2026-04-07T10:14:50,214   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/05/92/cd9a65cca32fdaf357d074ce1d2f51858fe2378a6e8b72539d26561418e3/scipion_em_tomo-3.0.9-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,214   Found link https://files.pythonhosted.org/packages/0b/fd/509e9148c9f6b8eb192a3aa201f4728b9233655b0f4a90183228b0037f77/scipion-em-tomo-3.0.10.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.10
2026-04-07T10:14:50,215   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d6/c1/ddb298fc9b11aa8206e120231583efa6d9f2bfc02c925f9a316b093f49fa/scipion_em_tomo-3.0.10-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,215   Found link https://files.pythonhosted.org/packages/dc/7f/834745f70596330af5c0af882ce5aea8074e288b96d0e5c12eb0bc4d0c1e/scipion-em-tomo-3.0.11.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.11
2026-04-07T10:14:50,216   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/a8/9d/95d4f3fc3c8e1d72ce99a4cc25646174a3751cae7c08cf7984ea1a111e79/scipion_em_tomo-3.0.11-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,217   Found link https://files.pythonhosted.org/packages/a2/8c/13644e0a04b94ba99ffdf7d61687bf2b76b4424efd431f8105d9849f4fe1/scipion-em-tomo-3.0.12.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.12
2026-04-07T10:14:50,218   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/e1/07/de68c987adcde252d671bcb58462d31e0e070b46fa6d46f0246dcfe406ff/scipion_em_tomo-3.0.12-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,219   Found link https://files.pythonhosted.org/packages/85/de/dbe234d7c7f4b000dc84755225b68c69d8860feab2d63be07716dfab290e/scipion-em-tomo-3.0.13.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.13
2026-04-07T10:14:50,219   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/6c/b6/00e9730d92c9ae305f7b94de91a2157f34fd2a1cf91b922277a4f56cf2ae/scipion_em_tomo-3.0.13-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,220   Found link https://files.pythonhosted.org/packages/d3/82/9a509444c48d8f1696c0c8760e236d0a788ab8eff20af46bac3864724eef/scipion-em-tomo-3.0.14.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.14
2026-04-07T10:14:50,221   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/a4/ee/d9bd2c12c01b1b21dc05657d9c193e13a546048aab39056150a7132d5ec4/scipion_em_tomo-3.0.14-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,221   Found link https://files.pythonhosted.org/packages/3b/2a/11bdfc8ac9198b2f13fae692999cef17a9d43ebafb628ed811e0ff6e61ae/scipion-em-tomo-3.0.15.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.0.15
2026-04-07T10:14:50,222   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/7d/84/b48cbf33ca559ec97210f164bedcb4e88fba1a6bed30049ff27f8dfb1c77/scipion_em_tomo-3.0.15-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,223   Found link https://files.pythonhosted.org/packages/52/2d/402e7f7e52cb4fd2d104308ecc058d05c10c96e2115c5b2d84a9df5efb3f/scipion-em-tomo-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.0
2026-04-07T10:14:50,224   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/6e/0d/928f81e2a365e5a359c03eeed1c6fac1df920aa91de65f87b54d56301780/scipion_em_tomo-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,224   Found link https://files.pythonhosted.org/packages/ed/62/12eeec013e35d9cb4b60162edafdbab91aab497aa1a99ed1d0dbb22c7d86/scipion-em-tomo-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.1
2026-04-07T10:14:50,225   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c0/ec/7fe29c40cc3dba11359fff2b78d8608c88984da2364ce2e35831105023c9/scipion_em_tomo-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,225   Found link https://files.pythonhosted.org/packages/b8/d2/40f08695253523e3c5bdba6696f5d624b9bcc7f4ad634564c8981dd66fd4/scipion-em-tomo-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.2
2026-04-07T10:14:50,226   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/0e/7d/2bbc9681e4e8a611697b4ebcca09c252d5271de849b36929199f428690ef/scipion_em_tomo-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,227   Found link https://files.pythonhosted.org/packages/89/c9/41a4d33c66adfd6a4a977542f149d2709f8b52656fd59478bd5c408ff8cd/scipion-em-tomo-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.3
2026-04-07T10:14:50,227   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/b7/a5/053968418f445baf5ba5e9154bb46a995acc919238bf44d1143f421020ee/scipion_em_tomo-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,228   Found link https://files.pythonhosted.org/packages/22/d6/aa06a0d73aa4688cb4530fb3b78473d16af8e86d57c9b2fc731f192bdded/scipion-em-tomo-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.4
2026-04-07T10:14:50,229   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/67/12/385eb1c78f220e90d6bbab27d262283cb8face0e865c212291003662e2da/scipion_em_tomo-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,230   Found link https://files.pythonhosted.org/packages/2b/d0/ff2c8658221f1f87df302baa72d614194552e6dc59e17c688de1185c6a34/scipion-em-tomo-3.1.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.5
2026-04-07T10:14:50,230   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/d6/20/49484a7eec2b228822e29a65e6625bd70471b506a8e9ad6c053b01ab0327/scipion_em_tomo-3.1.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,231   Found link https://files.pythonhosted.org/packages/80/8f/8bfa3300950a13f7fffa00515f2d83d164cee07eef31e10b4e849388a2f1/scipion-em-tomo-3.1.6.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.6
2026-04-07T10:14:50,232   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/f3/e9/ffce27d9103b12544997e3c307018f040747368497043825f8f2f0f07421/scipion_em_tomo-3.1.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,232   Found link https://files.pythonhosted.org/packages/e0/14/edac03039b27c59dbf29b6a7953cd2ec29f4e3ffa358f332f5d661340021/scipion-em-tomo-3.1.7.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.7
2026-04-07T10:14:50,233   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/4f/64/6da2171d34cccd06f45bb32c434fa0c8fb715c778049cda3ff4aa7b77955/scipion_em_tomo-3.1.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,234   Found link https://files.pythonhosted.org/packages/8e/54/f7c0776e9516ae2c43bba075f25b62f44cd972286af90e15008778d5d07d/scipion-em-tomo-3.1.8.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.8
2026-04-07T10:14:50,235   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cd/c3/1329006d7166c9f1d77e42336c867de3eabcf5b1482ca7049a7312925c18/scipion_em_tomo-3.1.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,235   Found link https://files.pythonhosted.org/packages/49/e8/860425d7e3f49a135d088eef9fb53406cd6c6fed051c232b09de1b80fa66/scipion-em-tomo-3.1.9.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.1.9
2026-04-07T10:14:50,236   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/e0/8e/6510653355e001efa66380410c6a3557d65969f86dc084f275b92c0dbf24/scipion_em_tomo-3.1.9-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,236   Found link https://files.pythonhosted.org/packages/41/da/dfdec0d60d53c086b01bb6c891fe5da550f1a11f63d9e2a9905f9ae6fba2/scipion-em-tomo-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.2.0
2026-04-07T10:14:50,237   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c7/3a/e3cd1ce4d1b1077626fb6a05940160d9a1dd5482d90b95f9e1f1e803c926/scipion_em_tomo-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,237   Found link https://files.pythonhosted.org/packages/88/ed/22560e0b3b77369c37d26db0efdeb61797421fe403459c5f8e1612a24113/scipion-em-tomo-3.3.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.3.0
2026-04-07T10:14:50,238   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/2b/27/d0b7770bc3717af55b5553072b556586257d8a8b2e03099ed87e4ca03e06/scipion_em_tomo-3.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,239   Found link https://files.pythonhosted.org/packages/c5/31/5ab268c56fcfbf735dc7ac69aef960487609195939e4f1338c07f490041f/scipion-em-tomo-3.4.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.4.0
2026-04-07T10:14:50,240   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/35/9e/f0fb3cbf6bee02520c8da704fe01cf88e6c7cee2baf71a8604712836ced1/scipion_em_tomo-3.4.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,240   Found link https://files.pythonhosted.org/packages/f4/64/1237aed2180c90ebde019c82517330131858da6af2210c5658d79f890f48/scipion-em-tomo-3.4.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.4.1
2026-04-07T10:14:50,241   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cc/33/5fe83f86542f53108078d770956e8bda4608b5fd1a83c06707d46d19bdb8/scipion_em_tomo-3.4.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,242   Found link https://files.pythonhosted.org/packages/51/99/5f5707ff74b0212081dac4438946d7df7d0244c49fc4e9ea52ffc1e0e11b/scipion-em-tomo-3.5.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.5.1
2026-04-07T10:14:50,242   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/13/7c/c45713ff8c39e0d4fa7fde9099d1410f2a3d61f55f1454f21df573159073/scipion_em_tomo-3.5.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,243   Found link https://files.pythonhosted.org/packages/f2/58/26759f7b22a3c34a70b9a8c426f887793cf6f183d754a35e14d5dd8e9787/scipion-em-tomo-3.6.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.6.0
2026-04-07T10:14:50,244   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cd/37/bf31b29151100ca6932509d51046481333b56fbf66a9fb6018f098076afd/scipion_em_tomo-3.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,245   Found link https://files.pythonhosted.org/packages/11/39/e8be6a170fa04431a23d6b84a0b037240ec168925411e4e9cd1e6de35ea7/scipion-em-tomo-3.6.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.6.1
2026-04-07T10:14:50,246   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/ec/f7/fcc782cfa2b18512865b0fff79dfe869c01c7cf6510df0d507211460124e/scipion_em_tomo-3.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,246   Found link https://files.pythonhosted.org/packages/aa/0c/b53570117a260035827387eab332e4d7aae0d781e4ff210baca3e21d3bd6/scipion-em-tomo-3.7.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.0
2026-04-07T10:14:50,247   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/5c/02/8ba7933cac14333d9df1cf13885f8893270644cd5bb35cb540f81cfe9a4b/scipion_em_tomo-3.7.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,247   Found link https://files.pythonhosted.org/packages/04/da/f1e2b8393e8491ab100476dc15a0ab149dcadbc2809cc2b5b438bba26ba3/scipion-em-tomo-3.7.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.1
2026-04-07T10:14:50,248   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/30/6f/2e09235406700c76c732a554fea5a6f445f0762cdb9f331d8d3c67b021da/scipion_em_tomo-3.7.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,248   Found link https://files.pythonhosted.org/packages/f2/27/a17a83a4c1f8b7cbe03e848bca784ef1baef29156774b85adb3318a6bc44/scipion-em-tomo-3.7.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.7.2
2026-04-07T10:14:50,249   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/58/13/443ef4613f73c64c381c9a08ff6a46d18b8c6bbe8a05c496256ba6f0d87d/scipion_em_tomo-3.7.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,250   Found link https://files.pythonhosted.org/packages/29/6b/d47a5ab218722cde4dddc85a86ff78a335b17a38c1c8d668165d1d671e76/scipion-em-tomo-3.8.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.8.0
2026-04-07T10:14:50,250   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/c0/c1/d9af4a08dcbabd048927b989f54b8b0514b976982c67851a5edc3c4a6be0/scipion_em_tomo-3.8.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,251   Found link https://files.pythonhosted.org/packages/5a/04/f2a09d3c4fb896ace07efc8cb1c8241de65a7c185b7aef37d9cdfe16c4a7/scipion-em-tomo-3.9.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.0
2026-04-07T10:14:50,252   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/95/84/288b3afdb371bfe4c3174a39b58c93afe0d45332659fc777496fddfd6741/scipion_em_tomo-3.9.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,252   Found link https://files.pythonhosted.org/packages/0f/ec/266ed7a46bda0c7108aba5c2ad96c2e93d47e4ca4cdd4f51f0e926811136/scipion-em-tomo-3.9.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.1
2026-04-07T10:14:50,253   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/7a/c2/31d44262fb95ea9594fa85c91fa942ad8d338d61f127b648f7871b64cf23/scipion_em_tomo-3.9.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,254   Found link https://files.pythonhosted.org/packages/60/8b/c21a18e69d44b6d787516fdc21df98fb5689e009c02c311e5afebafd7908/scipion-em-tomo-3.9.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo/), version: 3.9.2
2026-04-07T10:14:50,254   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/50/92/59978fd6aba3ef7870ce4b2375edd55d23a659e763ed1029c3aa79c891b6/scipion_em_tomo-3.9.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,255   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/cb/4f/a2de4aaa136fe23ab354cb48bcb737e2a7524fe01802fe65750ae1111c3a/scipion_em_tomo-3.10.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,256   Found link https://files.pythonhosted.org/packages/49/54/22228b763352d92de03bc5b6bc138e5322ff781328aee51b04266c127eff/scipion_em_tomo-3.10.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.10.0
2026-04-07T10:14:50,257   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/0e/32/615a433f3e22df1e6e1f9d83f73e693957a7f962ef7663eb25d563a6f798/scipion_em_tomo-3.11.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,257   Found link https://files.pythonhosted.org/packages/c2/25/445eaf87d65ca0ac47358a9252ccf324aa1458b28cc4b771e7888c5af2e3/scipion_em_tomo-3.11.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.3
2026-04-07T10:14:50,258   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/5c/63/0543444ee4f3692f8c5f0741134565be82dc5a33bdc7d01c15b750430332/scipion_em_tomo-3.11.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,259   Found link https://files.pythonhosted.org/packages/42/01/a403683bcf21535facb41ea57a05ed467510edca4107faf97894a432eea5/scipion_em_tomo-3.11.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.4
2026-04-07T10:14:50,260   Skipping link: No binaries permitted for scipion-em-tomo: https://files.pythonhosted.org/packages/3e/fe/2684137cbe10960e395380a1d8ca1d09f58fd1033890650f6e5cf2209f33/scipion_em_tomo-3.11.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,261   Found link https://files.pythonhosted.org/packages/0a/cd/1a8347104b0cbd8630017fef3a6d57b2fc4d165d3fd1650989a361e69794/scipion_em_tomo-3.11.5.tar.gz (from https://pypi.org/simple/scipion-em-tomo/) (requires-python:>=3.8), version: 3.11.5
2026-04-07T10:14:50,261 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo/
2026-04-07T10:14:50,262 Getting page https://www.piwheels.org/simple/scipion-em-tomo/
2026-04-07T10:14:50,264 Found index url https://www.piwheels.org/simple
2026-04-07T10:14:50,433 Fetched page https://www.piwheels.org/simple/scipion-em-tomo/ as text/html
2026-04-07T10:14:50,438   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.11.4-py3-none-any.whl#sha256=6294874759b9776f0946e0792373601a350c223393bfab0043e60954b50b307d (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,439   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.11.3-py3-none-any.whl#sha256=32aa2d896ab04309432bdfd4a5131ea537c5fc4e7ed801aba9a5d66c3b54a700 (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,440   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.10.0-py3-none-any.whl#sha256=d7426bea38a94f109569c29238c3c16a8df365ca04099b510f1e699c95a7b403 (from https://www.piwheels.org/simple/scipion-em-tomo/) (requires-python:>=3.8)
2026-04-07T10:14:50,440   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.10-py3-none-any.whl#sha256=ff7c8a2634853720654c729d8868be0ee38e6a06400157ea95521bb4bce439f2 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,441   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.9-py3-none-any.whl#sha256=0e3d4d4680d976ec72c3bd289d10d07b8dd7673d9a5465dfa9a4a418b87fc963 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,441   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.8-py3-none-any.whl#sha256=d692dd0a5b52a2ce3fcff9dd4c1709e41ab5d5bf30aaf7668ee5660e8170205c (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,442   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.7-py3-none-any.whl#sha256=fea40e7f7927c46468d6be4159fda7ddaf7ee32fc06d9cd350283bc411d82c35 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,442   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.6-py3-none-any.whl#sha256=8c575df02024489797dfb206c8f3ab8a443df79c36f23e6e4255c65ad80505dd (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,443   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.5-py3-none-any.whl#sha256=1d0acf0b97a40541a691c021428641453291095b6c74469987d786cc1b25eb84 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,443   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.4-py3-none-any.whl#sha256=9f0c7111043ce030d7e1d75bacdc774b1e4ef59837aa7f681e824cfdb483d6ff (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,444   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.2-py3-none-any.whl#sha256=ab66f4be38893d6016420d476acda5c18d85f739383935906efdb66b2e0bdfab (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,444   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-3.0.0-py3-none-any.whl#sha256=3eae830f3329dbe994cc8155a307396f86e4643ad956f61010a1fe281a0d3556 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,445   Skipping link: No binaries permitted for scipion-em-tomo: https://archive1.piwheels.org/simple/scipion-em-tomo/scipion_em_tomo-0.0.1-py3-none-any.whl#sha256=ad9ff32c3d6574e3915e471c471427e4e732a3cf21f3a5cb675edb0d2c083607 (from https://www.piwheels.org/simple/scipion-em-tomo/)
2026-04-07T10:14:50,446 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo/
2026-04-07T10:14:50,446 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo/
2026-04-07T10:14:50,470 Given no hashes to check 1 links for project 'scipion-em-tomo': discarding no candidates
2026-04-07T10:14:50,488 Collecting scipion-em-tomo==3.11.5
2026-04-07T10:14:50,491   Created temporary directory: /tmp/pip-unpack-3oi26oki
2026-04-07T10:14:50,638   Downloading scipion_em_tomo-3.11.5.tar.gz (246 kB)
2026-04-07T10:14:50,985   Added scipion-em-tomo==3.11.5 from https://files.pythonhosted.org/packages/0a/cd/1a8347104b0cbd8630017fef3a6d57b2fc4d165d3fd1650989a361e69794/scipion_em_tomo-3.11.5.tar.gz to build tracker '/tmp/pip-build-tracker-oaaizxun'
2026-04-07T10:14:50,990   Created temporary directory: /tmp/pip-build-env-flatn82b
2026-04-07T10:14:50,995   Installing build dependencies: started
2026-04-07T10:14:50,996   Running command pip subprocess to install build dependencies
2026-04-07T10:14:52,159   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-07T10:14:52,603   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-07T10:14:52,627   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-07T10:14:54,432   Collecting setuptools
2026-04-07T10:14:54,506     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-07T10:14:54,777   Collecting wheel
2026-04-07T10:14:54,792     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-04-07T10:14:54,980   Collecting packaging>=24.0
2026-04-07T10:14:54,995     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-04-07T10:14:57,972   Installing collected packages: setuptools, packaging, wheel
2026-04-07T10:15:01,467     Creating /tmp/pip-build-env-flatn82b/overlay/local/bin
2026-04-07T10:15:01,469     changing mode of /tmp/pip-build-env-flatn82b/overlay/local/bin/wheel to 755
2026-04-07T10:15:01,491   Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3
2026-04-07T10:15:01,770   Installing build dependencies: finished with status 'done'
2026-04-07T10:15:01,777   Getting requirements to build wheel: started
2026-04-07T10:15:01,778   Running command Getting requirements to build wheel
2026-04-07T10:15:02,379   No `packages` or `py_modules` configuration, performing automatic discovery.
2026-04-07T10:15:02,379   `flat-layout` detected -- analysing .
2026-04-07T10:15:02,398   discovered packages -- ['tomo', 'tomo.viewers', 'tomo.tests', 'tomo.protocols', 'tomo.convert', 'tomo.templates', 'tomo.viewers.deprecated', 'tomo.protocols.deprecated']
2026-04-07T10:15:02,404   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-07T10:15:02,405   !!

2026-04-07T10:15:02,406           ********************************************************************************
2026-04-07T10:15:02,407           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-07T10:15:02,408           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-07T10:15:02,408           or your builds will no longer be supported.

2026-04-07T10:15:02,410           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:02,410           ********************************************************************************

2026-04-07T10:15:02,411   !!
2026-04-07T10:15:02,412     corresp(dist, value, root_dir)
2026-04-07T10:15:02,480   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:02,480   !!

2026-04-07T10:15:02,481           ********************************************************************************
2026-04-07T10:15:02,482           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:02,483           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:02,484           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:02,485           ********************************************************************************

2026-04-07T10:15:02,486   !!
2026-04-07T10:15:02,487     dist._finalize_license_expression()
2026-04-07T10:15:02,487   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:02,488   !!

2026-04-07T10:15:02,489           ********************************************************************************
2026-04-07T10:15:02,490           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:02,490           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:02,491           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:02,492           ********************************************************************************

2026-04-07T10:15:02,493   !!
2026-04-07T10:15:02,493     self._finalize_license_expression()
2026-04-07T10:15:02,494   running egg_info
2026-04-07T10:15:02,496   writing scipion_em_tomo.egg-info/PKG-INFO
2026-04-07T10:15:02,499   writing dependency_links to scipion_em_tomo.egg-info/dependency_links.txt
2026-04-07T10:15:02,501   writing entry points to scipion_em_tomo.egg-info/entry_points.txt
2026-04-07T10:15:02,502   writing requirements to scipion_em_tomo.egg-info/requires.txt
2026-04-07T10:15:02,503   writing top-level names to scipion_em_tomo.egg-info/top_level.txt
2026-04-07T10:15:02,532   reading manifest file 'scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:02,538   reading manifest template 'MANIFEST.in'
2026-04-07T10:15:02,542   adding license file 'LICENSE'
2026-04-07T10:15:02,548   writing manifest file 'scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:02,645   Getting requirements to build wheel: finished with status 'done'
2026-04-07T10:15:02,648   Created temporary directory: /tmp/pip-modern-metadata-11o_rv7y
2026-04-07T10:15:02,650   Preparing metadata (pyproject.toml): started
2026-04-07T10:15:02,652   Running command Preparing metadata (pyproject.toml)
2026-04-07T10:15:03,211   No `packages` or `py_modules` configuration, performing automatic discovery.
2026-04-07T10:15:03,211   `flat-layout` detected -- analysing .
2026-04-07T10:15:03,228   discovered packages -- ['tomo', 'tomo.viewers', 'tomo.tests', 'tomo.protocols', 'tomo.convert', 'tomo.templates', 'tomo.viewers.deprecated', 'tomo.protocols.deprecated']
2026-04-07T10:15:03,233   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-07T10:15:03,233   !!

2026-04-07T10:15:03,235           ********************************************************************************
2026-04-07T10:15:03,235           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-07T10:15:03,237           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-07T10:15:03,237           or your builds will no longer be supported.

2026-04-07T10:15:03,238           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:03,239           ********************************************************************************

2026-04-07T10:15:03,240   !!
2026-04-07T10:15:03,241     corresp(dist, value, root_dir)
2026-04-07T10:15:03,307   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:03,308   !!

2026-04-07T10:15:03,309           ********************************************************************************
2026-04-07T10:15:03,309           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:03,311           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:03,312           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:03,313           ********************************************************************************

2026-04-07T10:15:03,314   !!
2026-04-07T10:15:03,314     dist._finalize_license_expression()
2026-04-07T10:15:03,315   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:03,316   !!

2026-04-07T10:15:03,316           ********************************************************************************
2026-04-07T10:15:03,317           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:03,318           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:03,319           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:03,319           ********************************************************************************

2026-04-07T10:15:03,320   !!
2026-04-07T10:15:03,320     self._finalize_license_expression()
2026-04-07T10:15:03,321   running dist_info
2026-04-07T10:15:03,329   creating /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info
2026-04-07T10:15:03,330   writing /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/PKG-INFO
2026-04-07T10:15:03,334   writing dependency_links to /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/dependency_links.txt
2026-04-07T10:15:03,335   writing entry points to /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/entry_points.txt
2026-04-07T10:15:03,337   writing requirements to /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/requires.txt
2026-04-07T10:15:03,338   writing top-level names to /tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/top_level.txt
2026-04-07T10:15:03,339   writing manifest file '/tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:03,365   reading manifest file '/tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:03,367   reading manifest template 'MANIFEST.in'
2026-04-07T10:15:03,370   adding license file 'LICENSE'
2026-04-07T10:15:03,375   writing manifest file '/tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:03,376   creating '/tmp/pip-modern-metadata-11o_rv7y/scipion_em_tomo-3.11.5.dist-info'
2026-04-07T10:15:03,501   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-07T10:15:03,506   Source in /tmp/pip-wheel-9s74xlhn/scipion-em-tomo_ab870a71b6f643918bcbccfc2c596701 has version 3.11.5, which satisfies requirement scipion-em-tomo==3.11.5 from https://files.pythonhosted.org/packages/0a/cd/1a8347104b0cbd8630017fef3a6d57b2fc4d165d3fd1650989a361e69794/scipion_em_tomo-3.11.5.tar.gz
2026-04-07T10:15:03,507   Removed scipion-em-tomo==3.11.5 from https://files.pythonhosted.org/packages/0a/cd/1a8347104b0cbd8630017fef3a6d57b2fc4d165d3fd1650989a361e69794/scipion_em_tomo-3.11.5.tar.gz from build tracker '/tmp/pip-build-tracker-oaaizxun'
2026-04-07T10:15:03,512 Created temporary directory: /tmp/pip-unpack-hwofmq4n
2026-04-07T10:15:03,513 Building wheels for collected packages: scipion-em-tomo
2026-04-07T10:15:03,517   Created temporary directory: /tmp/pip-wheel-j7oze9in
2026-04-07T10:15:03,518   Destination directory: /tmp/pip-wheel-j7oze9in
2026-04-07T10:15:03,520   Building wheel for scipion-em-tomo (pyproject.toml): started
2026-04-07T10:15:03,522   Running command Building wheel for scipion-em-tomo (pyproject.toml)
2026-04-07T10:15:04,066   No `packages` or `py_modules` configuration, performing automatic discovery.
2026-04-07T10:15:04,066   `flat-layout` detected -- analysing .
2026-04-07T10:15:04,083   discovered packages -- ['tomo', 'tomo.viewers', 'tomo.tests', 'tomo.protocols', 'tomo.convert', 'tomo.templates', 'tomo.viewers.deprecated', 'tomo.protocols.deprecated']
2026-04-07T10:15:04,089   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-07T10:15:04,089   !!

2026-04-07T10:15:04,091           ********************************************************************************
2026-04-07T10:15:04,091           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-07T10:15:04,092           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-07T10:15:04,093           or your builds will no longer be supported.

2026-04-07T10:15:04,094           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:04,094           ********************************************************************************

2026-04-07T10:15:04,095   !!
2026-04-07T10:15:04,095     corresp(dist, value, root_dir)
2026-04-07T10:15:04,157   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:04,157   !!

2026-04-07T10:15:04,158           ********************************************************************************
2026-04-07T10:15:04,159           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:04,160           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:04,161           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:04,161           ********************************************************************************

2026-04-07T10:15:04,163   !!
2026-04-07T10:15:04,163     dist._finalize_license_expression()
2026-04-07T10:15:04,164   /tmp/pip-build-env-flatn82b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-07T10:15:04,164   !!

2026-04-07T10:15:04,166           ********************************************************************************
2026-04-07T10:15:04,166           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-07T10:15:04,168           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-07T10:15:04,169           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-07T10:15:04,170           ********************************************************************************

2026-04-07T10:15:04,171   !!
2026-04-07T10:15:04,171     self._finalize_license_expression()
2026-04-07T10:15:04,172   running bdist_wheel
2026-04-07T10:15:04,182   running build
2026-04-07T10:15:04,182   running build_py
2026-04-07T10:15:04,188   creating build/lib/tomo
2026-04-07T10:15:04,190   copying tomo/objects.py -> build/lib/tomo
2026-04-07T10:15:04,195   copying tomo/__init__.py -> build/lib/tomo
2026-04-07T10:15:04,196   copying tomo/constants.py -> build/lib/tomo
2026-04-07T10:15:04,199   copying tomo/wizards.py -> build/lib/tomo
2026-04-07T10:15:04,200   copying tomo/utils.py -> build/lib/tomo
2026-04-07T10:15:04,203   creating build/lib/tomo/viewers
2026-04-07T10:15:04,204   copying tomo/viewers/viewers_data.py -> build/lib/tomo/viewers
2026-04-07T10:15:04,207   copying tomo/viewers/__init__.py -> build/lib/tomo/viewers
2026-04-07T10:15:04,209   copying tomo/viewers/views.py -> build/lib/tomo/viewers
2026-04-07T10:15:04,211   copying tomo/viewers/viewer_split_evenodd.py -> build/lib/tomo/viewers
2026-04-07T10:15:04,213   copying tomo/viewers/views_tkinter_tree.py -> build/lib/tomo/viewers
2026-04-07T10:15:04,217   creating build/lib/tomo/tests
2026-04-07T10:15:04,218   copying tomo/tests/test_import_with_pattern.py -> build/lib/tomo/tests
2026-04-07T10:15:04,221   copying tomo/tests/test_tomo_base.py -> build/lib/tomo/tests
2026-04-07T10:15:04,224   copying tomo/tests/test_base_centralized_layer.py -> build/lib/tomo/tests
2026-04-07T10:15:04,227   copying tomo/tests/tests_tomo_apply_tomomask.py -> build/lib/tomo/tests
2026-04-07T10:15:04,229   copying tomo/tests/test_import.py -> build/lib/tomo/tests
2026-04-07T10:15:04,232   copying tomo/tests/__init__.py -> build/lib/tomo/tests
2026-04-07T10:15:04,234   copying tomo/tests/tests_ts_invert_tilt_angles.py -> build/lib/tomo/tests
2026-04-07T10:15:04,237   copying tomo/tests/test_correct_tilt_offset.py -> build/lib/tomo/tests
2026-04-07T10:15:04,238   copying tomo/tests/test_compose_TS.py -> build/lib/tomo/tests
2026-04-07T10:15:04,241   copying tomo/tests/test_mesh_from_segmentation.py -> build/lib/tomo/tests
2026-04-07T10:15:04,242   copying tomo/tests/test_export.py -> build/lib/tomo/tests
2026-04-07T10:15:04,244   copying tomo/tests/test_ts_from_tomos.py -> build/lib/tomo/tests
2026-04-07T10:15:04,246   copying tomo/tests/test_join_sets.py -> build/lib/tomo/tests
2026-04-07T10:15:04,249   copying tomo/tests/test_objects.py -> build/lib/tomo/tests
2026-04-07T10:15:04,251   copying tomo/tests/test_transformations.py -> build/lib/tomo/tests
2026-04-07T10:15:04,254   creating build/lib/tomo/protocols
2026-04-07T10:15:04,255   copying tomo/protocols/protocol_import_ctf.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,258   copying tomo/protocols/protocol_import_coordinates_from_scipion.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,260   copying tomo/protocols/protocol_ts_correct_motion.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,263   copying tomo/protocols/protocol_ts_consensus_alignment.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,265   copying tomo/protocols/protocol_import_tomomasks.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,267   copying tomo/protocols/protocol_ts_import.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,270   copying tomo/protocols/protocol_ts_import_coordinates.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,273   copying tomo/protocols/protocol_extract_coordinates.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,275   copying tomo/protocols/protocol_particles_to_subtomograms.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,277   copying tomo/protocols/protocol_import_subtomograms.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,279   copying tomo/protocols/__init__.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,281   copying tomo/protocols/protocol_import_coordinates.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,283   copying tomo/protocols/protocol_correct_tilt_offset.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,285   copying tomo/protocols/protocol_export_coords.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,288   copying tomo/protocols/protocol_compose_TS.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,291   copying tomo/protocols/protocol_base.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,294   copying tomo/protocols/protocol_misalignTS.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,296   copying tomo/protocols/protocol_import_tomograms.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,299   copying tomo/protocols/protocol_mesh_from_segmentation.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,302   copying tomo/protocols/protocol_ts_from_tomograms.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,304   copying tomo/protocols/protocol_split_evenodd_subtomos.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,306   copying tomo/protocols/protocol_ts_base.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,308   copying tomo/protocols/protocol_ts_convert_coords3d.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,311   copying tomo/protocols/protocol_mask_coordinates.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,313   copying tomo/protocols/protocol_ts_estimate_ctf.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,315   copying tomo/protocols/protocol_tomo_apply_tomomask.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,318   copying tomo/protocols/protocol_tomo_to_mics.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,321   copying tomo/protocols/protocol_invert_tilt_angles.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,323   copying tomo/protocols/protocol_assignTransformationTS.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,326   copying tomo/protocols/protocol_project_coordinates.py -> build/lib/tomo/protocols
2026-04-07T10:15:04,329   creating build/lib/tomo/convert
2026-04-07T10:15:04,330   copying tomo/convert/__init__.py -> build/lib/tomo/convert
2026-04-07T10:15:04,332   copying tomo/convert/mdoc.py -> build/lib/tomo/convert
2026-04-07T10:15:04,335   copying tomo/convert/convert.py -> build/lib/tomo/convert
2026-04-07T10:15:04,338   creating build/lib/tomo/viewers/deprecated
2026-04-07T10:15:04,338   copying tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py -> build/lib/tomo/viewers/deprecated
2026-04-07T10:15:04,341   copying tomo/viewers/deprecated/__init__.py -> build/lib/tomo/viewers/deprecated
2026-04-07T10:15:04,343   creating build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,344   copying tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,346   copying tomo/protocols/deprecated/protocol_fit_ellipsoid.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,349   copying tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,351   copying tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,353   copying tomo/protocols/deprecated/__init__.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,355   copying tomo/protocols/deprecated/protocol_ctf_consensus.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,358   copying tomo/protocols/deprecated/protocol_ctf_validate.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,360   copying tomo/protocols/deprecated/protocol_rotate_astigmatism.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,362   copying tomo/protocols/deprecated/protocol_landmark_to_2d.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,365   copying tomo/protocols/deprecated/protocol_alignment_assign.py -> build/lib/tomo/protocols/deprecated
2026-04-07T10:15:04,367   running egg_info
2026-04-07T10:15:04,376   writing scipion_em_tomo.egg-info/PKG-INFO
2026-04-07T10:15:04,380   writing dependency_links to scipion_em_tomo.egg-info/dependency_links.txt
2026-04-07T10:15:04,381   writing entry points to scipion_em_tomo.egg-info/entry_points.txt
2026-04-07T10:15:04,382   writing requirements to scipion_em_tomo.egg-info/requires.txt
2026-04-07T10:15:04,384   writing top-level names to scipion_em_tomo.egg-info/top_level.txt
2026-04-07T10:15:04,401   reading manifest file 'scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:04,407   reading manifest template 'MANIFEST.in'
2026-04-07T10:15:04,410   adding license file 'LICENSE'
2026-04-07T10:15:04,416   writing manifest file 'scipion_em_tomo.egg-info/SOURCES.txt'
2026-04-07T10:15:04,424   copying tomo/icon.png -> build/lib/tomo
2026-04-07T10:15:04,427   copying tomo/protocols.conf -> build/lib/tomo
2026-04-07T10:15:04,429   creating build/lib/tomo/templates
2026-04-07T10:15:04,430   copying tomo/templates/202601_F_Streaming_Chlamy.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,433   copying tomo/templates/tutorial_STA_HIV.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,436   copying tomo/templates/tutorial_STA_apoferritin.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,439   copying tomo/templates/202601_Streaming_HIV.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,442   copying tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,446   copying tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,448   copying tomo/templates/202601_Streaming_Chlamy.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,451   copying tomo/templates/202601_F_Streaming_HIV.json.template -> build/lib/tomo/templates
2026-04-07T10:15:04,470   installing to build/bdist.linux-armv7l/wheel
2026-04-07T10:15:04,471   running install
2026-04-07T10:15:04,494   running install_lib
2026-04-07T10:15:04,499   creating build/bdist.linux-armv7l/wheel
2026-04-07T10:15:04,502   creating build/bdist.linux-armv7l/wheel/tomo
2026-04-07T10:15:04,503   copying build/lib/tomo/objects.py -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,508   creating build/bdist.linux-armv7l/wheel/tomo/viewers
2026-04-07T10:15:04,509   copying build/lib/tomo/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers
2026-04-07T10:15:04,512   copying build/lib/tomo/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers
2026-04-07T10:15:04,514   copying build/lib/tomo/viewers/views.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers
2026-04-07T10:15:04,516   copying build/lib/tomo/viewers/viewer_split_evenodd.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers
2026-04-07T10:15:04,518   creating build/bdist.linux-armv7l/wheel/tomo/viewers/deprecated
2026-04-07T10:15:04,519   copying build/lib/tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers/deprecated
2026-04-07T10:15:04,522   copying build/lib/tomo/viewers/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers/deprecated
2026-04-07T10:15:04,523   copying build/lib/tomo/viewers/views_tkinter_tree.py -> build/bdist.linux-armv7l/wheel/./tomo/viewers
2026-04-07T10:15:04,529   creating build/bdist.linux-armv7l/wheel/tomo/tests
2026-04-07T10:15:04,530   copying build/lib/tomo/tests/test_import_with_pattern.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,533   copying build/lib/tomo/tests/test_tomo_base.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,537   copying build/lib/tomo/tests/test_base_centralized_layer.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,540   copying build/lib/tomo/tests/tests_tomo_apply_tomomask.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,542   copying build/lib/tomo/tests/test_import.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,545   copying build/lib/tomo/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,547   copying build/lib/tomo/tests/tests_ts_invert_tilt_angles.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,550   copying build/lib/tomo/tests/test_correct_tilt_offset.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,552   copying build/lib/tomo/tests/test_compose_TS.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,554   copying build/lib/tomo/tests/test_mesh_from_segmentation.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,556   copying build/lib/tomo/tests/test_export.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,558   copying build/lib/tomo/tests/test_ts_from_tomos.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,560   copying build/lib/tomo/tests/test_join_sets.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,563   copying build/lib/tomo/tests/test_objects.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,565   copying build/lib/tomo/tests/test_transformations.py -> build/bdist.linux-armv7l/wheel/./tomo/tests
2026-04-07T10:15:04,567   copying build/lib/tomo/protocols.conf -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,571   creating build/bdist.linux-armv7l/wheel/tomo/protocols
2026-04-07T10:15:04,572   copying build/lib/tomo/protocols/protocol_import_ctf.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,574   copying build/lib/tomo/protocols/protocol_import_coordinates_from_scipion.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,576   copying build/lib/tomo/protocols/protocol_ts_correct_motion.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,579   copying build/lib/tomo/protocols/protocol_ts_consensus_alignment.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,582   copying build/lib/tomo/protocols/protocol_import_tomomasks.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,584   copying build/lib/tomo/protocols/protocol_ts_import.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,587   copying build/lib/tomo/protocols/protocol_ts_import_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,589   copying build/lib/tomo/protocols/protocol_extract_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,591   copying build/lib/tomo/protocols/protocol_particles_to_subtomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,593   copying build/lib/tomo/protocols/protocol_import_subtomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,595   copying build/lib/tomo/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,597   copying build/lib/tomo/protocols/protocol_import_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,600   copying build/lib/tomo/protocols/protocol_correct_tilt_offset.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,602   copying build/lib/tomo/protocols/protocol_export_coords.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,604   copying build/lib/tomo/protocols/protocol_compose_TS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,607   copying build/lib/tomo/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,609   copying build/lib/tomo/protocols/protocol_misalignTS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,612   copying build/lib/tomo/protocols/protocol_import_tomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,615   copying build/lib/tomo/protocols/protocol_mesh_from_segmentation.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,618   copying build/lib/tomo/protocols/protocol_ts_from_tomograms.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,620   copying build/lib/tomo/protocols/protocol_split_evenodd_subtomos.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,622   copying build/lib/tomo/protocols/protocol_ts_base.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,624   copying build/lib/tomo/protocols/protocol_ts_convert_coords3d.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,627   copying build/lib/tomo/protocols/protocol_mask_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,629   copying build/lib/tomo/protocols/protocol_ts_estimate_ctf.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,632   creating build/bdist.linux-armv7l/wheel/tomo/protocols/deprecated
2026-04-07T10:15:04,633   copying build/lib/tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,635   copying build/lib/tomo/protocols/deprecated/protocol_fit_ellipsoid.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,637   copying build/lib/tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,640   copying build/lib/tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,642   copying build/lib/tomo/protocols/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,644   copying build/lib/tomo/protocols/deprecated/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,647   copying build/lib/tomo/protocols/deprecated/protocol_ctf_validate.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,649   copying build/lib/tomo/protocols/deprecated/protocol_rotate_astigmatism.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,652   copying build/lib/tomo/protocols/deprecated/protocol_landmark_to_2d.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,654   copying build/lib/tomo/protocols/deprecated/protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols/deprecated
2026-04-07T10:15:04,656   copying build/lib/tomo/protocols/protocol_tomo_apply_tomomask.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,658   copying build/lib/tomo/protocols/protocol_tomo_to_mics.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,661   copying build/lib/tomo/protocols/protocol_invert_tilt_angles.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,663   copying build/lib/tomo/protocols/protocol_assignTransformationTS.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,665   copying build/lib/tomo/protocols/protocol_project_coordinates.py -> build/bdist.linux-armv7l/wheel/./tomo/protocols
2026-04-07T10:15:04,668   copying build/lib/tomo/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,670   copying build/lib/tomo/constants.py -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,672   creating build/bdist.linux-armv7l/wheel/tomo/convert
2026-04-07T10:15:04,673   copying build/lib/tomo/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo/convert
2026-04-07T10:15:04,675   copying build/lib/tomo/convert/mdoc.py -> build/bdist.linux-armv7l/wheel/./tomo/convert
2026-04-07T10:15:04,678   copying build/lib/tomo/convert/convert.py -> build/bdist.linux-armv7l/wheel/./tomo/convert
2026-04-07T10:15:04,680   copying build/lib/tomo/icon.png -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,682   copying build/lib/tomo/wizards.py -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,684   creating build/bdist.linux-armv7l/wheel/tomo/templates
2026-04-07T10:15:04,685   copying build/lib/tomo/templates/202601_F_Streaming_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,688   copying build/lib/tomo/templates/tutorial_STA_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,690   copying build/lib/tomo/templates/tutorial_STA_apoferritin.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,693   copying build/lib/tomo/templates/202601_Streaming_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,695   copying build/lib/tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,698   copying build/lib/tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,701   copying build/lib/tomo/templates/202601_Streaming_Chlamy.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,703   copying build/lib/tomo/templates/202601_F_Streaming_HIV.json.template -> build/bdist.linux-armv7l/wheel/./tomo/templates
2026-04-07T10:15:04,705   copying build/lib/tomo/utils.py -> build/bdist.linux-armv7l/wheel/./tomo
2026-04-07T10:15:04,708   running install_egg_info
2026-04-07T10:15:04,712   Copying scipion_em_tomo.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_tomo-3.11.5-py3.11.egg-info
2026-04-07T10:15:04,724   running install_scripts
2026-04-07T10:15:04,738   creating build/bdist.linux-armv7l/wheel/scipion_em_tomo-3.11.5.dist-info/WHEEL
2026-04-07T10:15:04,740   creating '/tmp/pip-wheel-j7oze9in/.tmp-l18j5fw2/scipion_em_tomo-3.11.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-07T10:15:04,749   adding 'scipion_em_tomo-3.11.5.dist-info/licenses/LICENSE'
2026-04-07T10:15:04,751   adding 'tomo/__init__.py'
2026-04-07T10:15:04,753   adding 'tomo/constants.py'
2026-04-07T10:15:04,754   adding 'tomo/icon.png'
2026-04-07T10:15:04,770   adding 'tomo/objects.py'
2026-04-07T10:15:04,772   adding 'tomo/protocols.conf'
2026-04-07T10:15:04,774   adding 'tomo/utils.py'
2026-04-07T10:15:04,776   adding 'tomo/wizards.py'
2026-04-07T10:15:04,778   adding 'tomo/convert/__init__.py'
2026-04-07T10:15:04,779   adding 'tomo/convert/convert.py'
2026-04-07T10:15:04,782   adding 'tomo/convert/mdoc.py'
2026-04-07T10:15:04,784   adding 'tomo/protocols/__init__.py'
2026-04-07T10:15:04,786   adding 'tomo/protocols/protocol_assignTransformationTS.py'
2026-04-07T10:15:04,789   adding 'tomo/protocols/protocol_base.py'
2026-04-07T10:15:04,792   adding 'tomo/protocols/protocol_compose_TS.py'
2026-04-07T10:15:04,794   adding 'tomo/protocols/protocol_correct_tilt_offset.py'
2026-04-07T10:15:04,795   adding 'tomo/protocols/protocol_export_coords.py'
2026-04-07T10:15:04,797   adding 'tomo/protocols/protocol_extract_coordinates.py'
2026-04-07T10:15:04,800   adding 'tomo/protocols/protocol_import_coordinates.py'
2026-04-07T10:15:04,801   adding 'tomo/protocols/protocol_import_coordinates_from_scipion.py'
2026-04-07T10:15:04,803   adding 'tomo/protocols/protocol_import_ctf.py'
2026-04-07T10:15:04,805   adding 'tomo/protocols/protocol_import_subtomograms.py'
2026-04-07T10:15:04,807   adding 'tomo/protocols/protocol_import_tomograms.py'
2026-04-07T10:15:04,809   adding 'tomo/protocols/protocol_import_tomomasks.py'
2026-04-07T10:15:04,810   adding 'tomo/protocols/protocol_invert_tilt_angles.py'
2026-04-07T10:15:04,812   adding 'tomo/protocols/protocol_mask_coordinates.py'
2026-04-07T10:15:04,814   adding 'tomo/protocols/protocol_mesh_from_segmentation.py'
2026-04-07T10:15:04,817   adding 'tomo/protocols/protocol_misalignTS.py'
2026-04-07T10:15:04,818   adding 'tomo/protocols/protocol_particles_to_subtomograms.py'
2026-04-07T10:15:04,820   adding 'tomo/protocols/protocol_project_coordinates.py'
2026-04-07T10:15:04,821   adding 'tomo/protocols/protocol_split_evenodd_subtomos.py'
2026-04-07T10:15:04,823   adding 'tomo/protocols/protocol_tomo_apply_tomomask.py'
2026-04-07T10:15:04,825   adding 'tomo/protocols/protocol_tomo_to_mics.py'
2026-04-07T10:15:04,827   adding 'tomo/protocols/protocol_ts_base.py'
2026-04-07T10:15:04,830   adding 'tomo/protocols/protocol_ts_consensus_alignment.py'
2026-04-07T10:15:04,831   adding 'tomo/protocols/protocol_ts_convert_coords3d.py'
2026-04-07T10:15:04,834   adding 'tomo/protocols/protocol_ts_correct_motion.py'
2026-04-07T10:15:04,836   adding 'tomo/protocols/protocol_ts_estimate_ctf.py'
2026-04-07T10:15:04,838   adding 'tomo/protocols/protocol_ts_from_tomograms.py'
2026-04-07T10:15:04,844   adding 'tomo/protocols/protocol_ts_import.py'
2026-04-07T10:15:04,846   adding 'tomo/protocols/protocol_ts_import_coordinates.py'
2026-04-07T10:15:04,848   adding 'tomo/protocols/deprecated/__init__.py'
2026-04-07T10:15:04,849   adding 'tomo/protocols/deprecated/protocol_alignment_assign.py'
2026-04-07T10:15:04,851   adding 'tomo/protocols/deprecated/protocol_assign_tomo2subtomo.py'
2026-04-07T10:15:04,853   adding 'tomo/protocols/deprecated/protocol_assign_tomo2tomoMask.py'
2026-04-07T10:15:04,854   adding 'tomo/protocols/deprecated/protocol_consensus_classes_subtomo.py'
2026-04-07T10:15:04,857   adding 'tomo/protocols/deprecated/protocol_ctf_consensus.py'
2026-04-07T10:15:04,859   adding 'tomo/protocols/deprecated/protocol_ctf_validate.py'
2026-04-07T10:15:04,861   adding 'tomo/protocols/deprecated/protocol_fit_ellipsoid.py'
2026-04-07T10:15:04,863   adding 'tomo/protocols/deprecated/protocol_landmark_to_2d.py'
2026-04-07T10:15:04,865   adding 'tomo/protocols/deprecated/protocol_rotate_astigmatism.py'
2026-04-07T10:15:04,867   adding 'tomo/templates/202601_F_Streaming_Chlamy.json.template'
2026-04-07T10:15:04,869   adding 'tomo/templates/202601_F_Streaming_HIV.json.template'
2026-04-07T10:15:04,871   adding 'tomo/templates/202601_Streaming_Chlamy.json.template'
2026-04-07T10:15:04,873   adding 'tomo/templates/202601_Streaming_HIV.json.template'
2026-04-07T10:15:04,875   adding 'tomo/templates/tutorial_STA_CellEnv_Chlamy.json.template'
2026-04-07T10:15:04,877   adding 'tomo/templates/tutorial_STA_HIV.json.template'
2026-04-07T10:15:04,880   adding 'tomo/templates/tutorial_STA_apoferritin.json.template'
2026-04-07T10:15:04,881   adding 'tomo/templates/tutorial_nonOrientedPicking_ribosome.json.template'
2026-04-07T10:15:04,884   adding 'tomo/tests/__init__.py'
2026-04-07T10:15:04,891   adding 'tomo/tests/test_base_centralized_layer.py'
2026-04-07T10:15:04,893   adding 'tomo/tests/test_compose_TS.py'
2026-04-07T10:15:04,894   adding 'tomo/tests/test_correct_tilt_offset.py'
2026-04-07T10:15:04,896   adding 'tomo/tests/test_export.py'
2026-04-07T10:15:04,900   adding 'tomo/tests/test_import.py'
2026-04-07T10:15:04,904   adding 'tomo/tests/test_import_with_pattern.py'
2026-04-07T10:15:04,906   adding 'tomo/tests/test_join_sets.py'
2026-04-07T10:15:04,907   adding 'tomo/tests/test_mesh_from_segmentation.py'
2026-04-07T10:15:04,909   adding 'tomo/tests/test_objects.py'
2026-04-07T10:15:04,912   adding 'tomo/tests/test_tomo_base.py'
2026-04-07T10:15:04,914   adding 'tomo/tests/test_transformations.py'
2026-04-07T10:15:04,916   adding 'tomo/tests/test_ts_from_tomos.py'
2026-04-07T10:15:04,918   adding 'tomo/tests/tests_tomo_apply_tomomask.py'
2026-04-07T10:15:04,919   adding 'tomo/tests/tests_ts_invert_tilt_angles.py'
2026-04-07T10:15:04,921   adding 'tomo/viewers/__init__.py'
2026-04-07T10:15:04,922   adding 'tomo/viewers/viewer_split_evenodd.py'
2026-04-07T10:15:04,924   adding 'tomo/viewers/viewers_data.py'
2026-04-07T10:15:04,925   adding 'tomo/viewers/views.py'
2026-04-07T10:15:04,935   adding 'tomo/viewers/views_tkinter_tree.py'
2026-04-07T10:15:04,937   adding 'tomo/viewers/deprecated/__init__.py'
2026-04-07T10:15:04,939   adding 'tomo/viewers/deprecated/viewer_ctf_tomo_consensus.py'
2026-04-07T10:15:04,940   adding 'scipion_em_tomo-3.11.5.dist-info/METADATA'
2026-04-07T10:15:04,941   adding 'scipion_em_tomo-3.11.5.dist-info/WHEEL'
2026-04-07T10:15:04,942   adding 'scipion_em_tomo-3.11.5.dist-info/entry_points.txt'
2026-04-07T10:15:04,943   adding 'scipion_em_tomo-3.11.5.dist-info/top_level.txt'
2026-04-07T10:15:04,945   adding 'scipion_em_tomo-3.11.5.dist-info/RECORD'
2026-04-07T10:15:04,951   removing build/bdist.linux-armv7l/wheel
2026-04-07T10:15:05,070   Building wheel for scipion-em-tomo (pyproject.toml): finished with status 'done'
2026-04-07T10:15:05,082   Created wheel for scipion-em-tomo: filename=scipion_em_tomo-3.11.5-py3-none-any.whl size=320271 sha256=1d6b7c9fb642428a2309fdcf8795bf8eb76eb266f5db4c2492ee4809cbda5749
2026-04-07T10:15:05,084   Stored in directory: /tmp/pip-ephem-wheel-cache-nf6_21v8/wheels/5f/3e/90/1a96cccf646d4adb9c0565b6c49009840e506fb9abf62accfa
2026-04-07T10:15:05,098 Successfully built scipion-em-tomo
2026-04-07T10:15:05,108 Removed build tracker: '/tmp/pip-build-tracker-oaaizxun'