2026-04-07T16:09:50,976 Created temporary directory: /tmp/pip-ephem-wheel-cache-i5l_5wsw 2026-04-07T16:09:50,978 Created temporary directory: /tmp/pip-build-tracker-cawge3ih 2026-04-07T16:09:50,978 Initialized build tracking at /tmp/pip-build-tracker-cawge3ih 2026-04-07T16:09:50,979 Created build tracker: /tmp/pip-build-tracker-cawge3ih 2026-04-07T16:09:50,979 Entered build tracker: /tmp/pip-build-tracker-cawge3ih 2026-04-07T16:09:50,980 Created temporary directory: /tmp/pip-wheel-tbrg02x2 2026-04-07T16:09:50,983 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T16:09:50,985 Created temporary directory: /tmp/pip-ephem-wheel-cache-eobhskut 2026-04-07T16:09:51,007 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T16:09:51,010 2 location(s) to search for versions of pirlygenes: 2026-04-07T16:09:51,010 * https://pypi.org/simple/pirlygenes/ 2026-04-07T16:09:51,010 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-07T16:09:51,011 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-07T16:09:51,011 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-07T16:09:51,013 Found index url https://pypi.org/simple 2026-04-07T16:09:51,241 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-07T16:09:51,253 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,254 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-07T16:09:51,255 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,256 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-07T16:09:51,256 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,257 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-07T16:09:51,258 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,259 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-07T16:09:51,260 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,261 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-07T16:09:51,262 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,263 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-07T16:09:51,263 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,264 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-07T16:09:51,265 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,266 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-07T16:09:51,266 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,267 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-07T16:09:51,268 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/23/eb/83f7d6be1025085e7c29efc3a3d0e5ba1adab69b03202b425503da5e13b6/pirlygenes-2.3.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,269 Found link https://files.pythonhosted.org/packages/1d/8f/3303633fa1cf06d5ca29da10eda17f6a15dc63ab6409a2a44d7c2c0c0ecb/pirlygenes-2.3.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.0 2026-04-07T16:09:51,270 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/72/59/5cb1b74270e4b9f43f9db46affd988d079371b6a7fd5ac939bfd8a90550e/pirlygenes-2.3.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,271 Found link https://files.pythonhosted.org/packages/53/f7/8cb01c8ddf2b85a258c021c1e4fe367a3221132c44293a5fcf3f15d6f332/pirlygenes-2.3.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.1 2026-04-07T16:09:51,271 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,272 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-07T16:09:51,273 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,274 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.0 2026-04-07T16:09:51,275 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/03/65/848fbf13686f897447a15f7253d01911214fcbdcf291f647e00c00f9fdbb/pirlygenes-2.4.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,276 Found link https://files.pythonhosted.org/packages/45/7f/c57a8646cfb684413ba4687e8c8727cbe8dd7debc4a84bf211a9e5ffeaa5/pirlygenes-2.4.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.1 2026-04-07T16:09:51,276 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/cd/76/2eab340e9647df83214ba9b206adaabd25ee29a39b0602dab5ef5f05675c/pirlygenes-2.4.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,277 Found link https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-07T16:09:51,277 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,278 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-07T16:09:51,279 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,280 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-07T16:09:51,280 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,281 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-07T16:09:51,282 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,283 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-07T16:09:51,283 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,284 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-07T16:09:51,285 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,286 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-07T16:09:51,287 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,287 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.8.0 2026-04-07T16:09:51,288 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/df/83/41cf7cc0aae6cbf96bcc5855f77b43c27aa675f949ddf382f85607a078cb/pirlygenes-2.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,289 Found link https://files.pythonhosted.org/packages/e2/74/d3dfac2a8085a1705b93a8e24b5e3112b3c27610b10f53a19294ccf89926/pirlygenes-2.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.8.1 2026-04-07T16:09:51,289 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9b/8f/cd34cbadb7b38a6a974763069dd07bb780d1c82337fa1c9400bee98978f8/pirlygenes-2.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,290 Found link https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-07T16:09:51,291 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,292 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-07T16:09:51,292 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,293 Found link https://files.pythonhosted.org/packages/c9/89/795bf75972aba487519c579848a6a0aa41af85cdb40a4ef6655f6ccff9b0/pirlygenes-2.11.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.11.0 2026-04-07T16:09:51,294 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3f/6dcb76599cb2820f5cd1066c0d8cd842b7bc6bb8c6917d477ba6b2220947/pirlygenes-2.12.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,295 Found link https://files.pythonhosted.org/packages/29/79/0eb36ca46c02af18da5f7be69c7815f03d21bacac92bde80c37ac742f328/pirlygenes-2.12.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.12.0 2026-04-07T16:09:51,295 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/1b/b031480204c158068a8a9a41f9943f64a8d79db6208bb248992194647b41/pirlygenes-2.13.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,296 Found link https://files.pythonhosted.org/packages/6a/ab/24d8ae363a602cdc9546b361c682f9617021dcc21108da752a133e924d61/pirlygenes-2.13.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.13.0 2026-04-07T16:09:51,297 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/11/09/638a409f1f5e952118c66b24f370b4e8a3e897d91071099ff155be9becc8/pirlygenes-2.14.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,298 Found link https://files.pythonhosted.org/packages/73/b5/f9e8f070a97da840f6e6e486d49bde55bc00bc6ecae9bf11f0d08025a6dd/pirlygenes-2.14.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.14.0 2026-04-07T16:09:51,298 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/95/2a/b43f3803bea70ac0974ab8c4df778feb31086978651b9f3c72f8eb65f42b/pirlygenes-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,299 Found link https://files.pythonhosted.org/packages/52/c6/b99e09d09e6fd528005a69015eb30c5993ba204329d4e94b6031f9fadaf2/pirlygenes-3.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.0.0 2026-04-07T16:09:51,300 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-07T16:09:51,300 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-07T16:09:51,302 Found index url https://www.piwheels.org/simple 2026-04-07T16:09:51,475 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-07T16:09:51,484 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,485 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,485 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.10.0-py3-none-any.whl#sha256=393a743c2c0abdcbb8f787acfe60892c2335aa4a6be80038396dc5b27473274c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,486 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.9.0-py3-none-any.whl#sha256=ca97e53c115bc9d06958ccce0494c60d942faba3dd044564ca15284523b8ec19 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,486 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.8.1-py3-none-any.whl#sha256=1b346af13b190e47650615724130b80dc1044b25269d3603013a7436e13f4ab6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,487 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,488 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,488 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,489 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,490 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,490 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,490 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.5.0-py3-none-any.whl#sha256=7ed846a4e0950617d0103bb8a51b54f0f00bfa982caa83c9013067f52251e39e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,491 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.4.2-py3-none-any.whl#sha256=25793e34918b22dc36562123fdf4e753df72f9cc712aa69c1f151b96a09ab68a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,491 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,492 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,492 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,493 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,494 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,494 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,495 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,495 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,496 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,496 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,497 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,497 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,498 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,498 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-07T16:09:51,499 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-07T16:09:51,499 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-07T16:09:51,523 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-07T16:09:51,543 Collecting pirlygenes==2.13.0 2026-04-07T16:09:51,545 Created temporary directory: /tmp/pip-unpack-i4dbdt77 2026-04-07T16:09:51,807 Downloading pirlygenes-2.13.0.tar.gz (1.4 MB) 2026-04-07T16:09:52,335 Added pirlygenes==2.13.0 from https://files.pythonhosted.org/packages/6a/ab/24d8ae363a602cdc9546b361c682f9617021dcc21108da752a133e924d61/pirlygenes-2.13.0.tar.gz to build tracker '/tmp/pip-build-tracker-cawge3ih' 2026-04-07T16:09:52,340 Created temporary directory: /tmp/pip-build-env-jgxm315c 2026-04-07T16:09:52,345 Installing build dependencies: started 2026-04-07T16:09:52,346 Running command pip subprocess to install build dependencies 2026-04-07T16:09:53,480 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-07T16:09:53,888 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T16:09:53,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T16:09:55,709 Collecting setuptools>=60 2026-04-07T16:09:55,807 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-07T16:09:56,187 Collecting setuptools-scm>=8.0 2026-04-07T16:09:56,204 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-07T16:09:56,288 Collecting vcs-versioning>=1.0.0.dev0 2026-04-07T16:09:56,307 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-07T16:09:56,485 Collecting packaging>=20 2026-04-07T16:09:56,501 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-07T16:09:59,504 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-07T16:10:03,481 Creating /tmp/pip-build-env-jgxm315c/overlay/local/bin 2026-04-07T16:10:03,484 changing mode of /tmp/pip-build-env-jgxm315c/overlay/local/bin/vcs-versioning to 755 2026-04-07T16:10:03,605 changing mode of /tmp/pip-build-env-jgxm315c/overlay/local/bin/setuptools-scm to 755 2026-04-07T16:10:03,635 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-07T16:10:03,931 Installing build dependencies: finished with status 'done' 2026-04-07T16:10:03,946 Getting requirements to build wheel: started 2026-04-07T16:10:03,947 Running command Getting requirements to build wheel 2026-04-07T16:10:04,631 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-07T16:10:04,741 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:04,742 !! 2026-04-07T16:10:04,743 ******************************************************************************** 2026-04-07T16:10:04,743 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:04,744 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:04,745 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:04,746 ******************************************************************************** 2026-04-07T16:10:04,747 !! 2026-04-07T16:10:04,747 dist._finalize_license_expression() 2026-04-07T16:10:04,748 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:04,749 !! 2026-04-07T16:10:04,750 ******************************************************************************** 2026-04-07T16:10:04,750 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:04,752 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:04,753 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:04,753 ******************************************************************************** 2026-04-07T16:10:04,754 !! 2026-04-07T16:10:04,755 self._finalize_license_expression() 2026-04-07T16:10:04,756 running egg_info 2026-04-07T16:10:04,765 writing pirlygenes.egg-info/PKG-INFO 2026-04-07T16:10:04,768 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-07T16:10:04,770 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-07T16:10:04,772 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-07T16:10:04,773 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-07T16:10:04,814 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-07T16:10:04,815 return get_active_overrides().subprocess_timeout 2026-04-07T16:10:04,822 listing git files failed - pretending there aren't any 2026-04-07T16:10:04,832 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:04,840 adding license file 'LICENSE' 2026-04-07T16:10:04,845 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:04,949 Getting requirements to build wheel: finished with status 'done' 2026-04-07T16:10:04,952 Created temporary directory: /tmp/pip-modern-metadata-mqrswym7 2026-04-07T16:10:04,955 Preparing metadata (pyproject.toml): started 2026-04-07T16:10:04,956 Running command Preparing metadata (pyproject.toml) 2026-04-07T16:10:05,590 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-07T16:10:05,695 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:05,696 !! 2026-04-07T16:10:05,697 ******************************************************************************** 2026-04-07T16:10:05,697 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:05,698 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:05,699 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:05,699 ******************************************************************************** 2026-04-07T16:10:05,701 !! 2026-04-07T16:10:05,701 dist._finalize_license_expression() 2026-04-07T16:10:05,702 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:05,702 !! 2026-04-07T16:10:05,703 ******************************************************************************** 2026-04-07T16:10:05,704 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:05,705 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:05,706 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:05,707 ******************************************************************************** 2026-04-07T16:10:05,708 !! 2026-04-07T16:10:05,708 self._finalize_license_expression() 2026-04-07T16:10:05,710 running dist_info 2026-04-07T16:10:05,725 creating /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info 2026-04-07T16:10:05,726 writing /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/PKG-INFO 2026-04-07T16:10:05,730 writing dependency_links to /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/dependency_links.txt 2026-04-07T16:10:05,731 writing entry points to /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/entry_points.txt 2026-04-07T16:10:05,733 writing requirements to /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/requires.txt 2026-04-07T16:10:05,734 writing top-level names to /tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/top_level.txt 2026-04-07T16:10:05,735 writing manifest file '/tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:05,772 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-07T16:10:05,773 return get_active_overrides().subprocess_timeout 2026-04-07T16:10:05,779 listing git files failed - pretending there aren't any 2026-04-07T16:10:05,787 reading manifest file '/tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:05,789 adding license file 'LICENSE' 2026-04-07T16:10:05,793 writing manifest file '/tmp/pip-modern-metadata-mqrswym7/pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:05,794 creating '/tmp/pip-modern-metadata-mqrswym7/pirlygenes-2.13.0.dist-info' 2026-04-07T16:10:05,929 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-07T16:10:05,935 Source in /tmp/pip-wheel-tbrg02x2/pirlygenes_c3508a458f4f4ddd8c82bcd01f999414 has version 2.13.0, which satisfies requirement pirlygenes==2.13.0 from https://files.pythonhosted.org/packages/6a/ab/24d8ae363a602cdc9546b361c682f9617021dcc21108da752a133e924d61/pirlygenes-2.13.0.tar.gz 2026-04-07T16:10:05,936 Removed pirlygenes==2.13.0 from https://files.pythonhosted.org/packages/6a/ab/24d8ae363a602cdc9546b361c682f9617021dcc21108da752a133e924d61/pirlygenes-2.13.0.tar.gz from build tracker '/tmp/pip-build-tracker-cawge3ih' 2026-04-07T16:10:05,943 Created temporary directory: /tmp/pip-unpack-5kmsho8c 2026-04-07T16:10:05,944 Building wheels for collected packages: pirlygenes 2026-04-07T16:10:05,948 Created temporary directory: /tmp/pip-wheel-2py329h7 2026-04-07T16:10:05,949 Destination directory: /tmp/pip-wheel-2py329h7 2026-04-07T16:10:05,952 Building wheel for pirlygenes (pyproject.toml): started 2026-04-07T16:10:05,953 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-07T16:10:06,579 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-07T16:10:06,681 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:06,682 !! 2026-04-07T16:10:06,683 ******************************************************************************** 2026-04-07T16:10:06,684 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:06,685 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:06,687 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:06,687 ******************************************************************************** 2026-04-07T16:10:06,724 !! 2026-04-07T16:10:06,725 dist._finalize_license_expression() 2026-04-07T16:10:06,725 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T16:10:06,726 !! 2026-04-07T16:10:06,727 ******************************************************************************** 2026-04-07T16:10:06,728 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T16:10:06,729 License :: OSI Approved :: Apache Software License 2026-04-07T16:10:06,730 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T16:10:06,731 ******************************************************************************** 2026-04-07T16:10:06,732 !! 2026-04-07T16:10:06,733 self._finalize_license_expression() 2026-04-07T16:10:06,734 running bdist_wheel 2026-04-07T16:10:06,755 running build 2026-04-07T16:10:06,756 running build_py 2026-04-07T16:10:06,758 creating build/lib/pirlygenes 2026-04-07T16:10:06,763 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-07T16:10:06,766 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-07T16:10:06,768 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-07T16:10:06,772 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-07T16:10:06,775 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-07T16:10:06,778 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-07T16:10:06,780 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-07T16:10:06,783 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-07T16:10:06,786 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-07T16:10:06,789 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-07T16:10:06,792 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-07T16:10:06,795 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-07T16:10:06,799 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-07T16:10:06,802 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-07T16:10:06,806 running egg_info 2026-04-07T16:10:06,822 writing pirlygenes.egg-info/PKG-INFO 2026-04-07T16:10:06,826 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-07T16:10:06,828 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-07T16:10:06,829 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-07T16:10:06,830 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-07T16:10:06,862 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-07T16:10:06,863 return get_active_overrides().subprocess_timeout 2026-04-07T16:10:06,871 listing git files failed - pretending there aren't any 2026-04-07T16:10:06,879 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:06,886 adding license file 'LICENSE' 2026-04-07T16:10:06,891 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-07T16:10:06,894 /tmp/pip-build-env-jgxm315c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-07T16:10:06,894 !! 2026-04-07T16:10:06,895 ******************************************************************************** 2026-04-07T16:10:06,896 ############################ 2026-04-07T16:10:06,896 # Package would be ignored # 2026-04-07T16:10:06,897 ############################ 2026-04-07T16:10:06,897 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-07T16:10:06,898 but it is absent from setuptools' `packages` configuration. 2026-04-07T16:10:06,899 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-07T16:10:06,900 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-07T16:10:06,900 to the `packages` configuration field. 2026-04-07T16:10:06,901 Alternatively, you can also rely on setuptools' discovery methods 2026-04-07T16:10:06,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-07T16:10:06,902 instead of `find_packages(...)`/`find:`). 2026-04-07T16:10:06,903 You can read more about "package discovery" on setuptools documentation page: 2026-04-07T16:10:06,905 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-07T16:10:06,906 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-07T16:10:06,906 already explicitly excluding 'pirlygenes.data' via 2026-04-07T16:10:06,907 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-07T16:10:06,908 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-07T16:10:06,909 combination with a more fine grained `package-data` configuration. 2026-04-07T16:10:06,912 You can read more about "package data files" on setuptools documentation page: 2026-04-07T16:10:06,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-07T16:10:06,918 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-07T16:10:06,920 even if it does not contain any `.py` files. 2026-04-07T16:10:06,921 On the other hand, currently there is no concept of package data 2026-04-07T16:10:06,922 directory, all directories are treated like packages. 2026-04-07T16:10:06,923 ******************************************************************************** 2026-04-07T16:10:06,925 !! 2026-04-07T16:10:06,926 check.warn(importable) 2026-04-07T16:10:06,927 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-07T16:10:06,929 creating build/lib/pirlygenes/data 2026-04-07T16:10:06,975 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:06,976 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:06,977 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:06,978 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:06,979 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:06,984 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,027 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,029 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,033 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,036 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,040 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,048 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,052 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,057 copying pirlygenes/data/immune-gene-sets.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,061 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,066 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,069 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,154 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,156 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-07T16:10:07,178 installing to build/bdist.linux-armv7l/wheel 2026-04-07T16:10:07,178 running install 2026-04-07T16:10:07,201 running install_lib 2026-04-07T16:10:07,209 creating build/bdist.linux-armv7l/wheel 2026-04-07T16:10:07,212 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-07T16:10:07,213 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,216 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,218 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,221 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,223 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,225 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,228 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,231 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,233 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,236 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,239 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,242 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-07T16:10:07,244 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,277 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,279 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,288 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,292 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,295 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,297 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,299 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,301 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,303 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,305 copying build/lib/pirlygenes/data/immune-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,307 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,309 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,311 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,314 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,317 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,320 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,322 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,326 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-07T16:10:07,329 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,331 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,335 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,337 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-07T16:10:07,340 running install_egg_info 2026-04-07T16:10:07,352 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-2.13.0-py3.11.egg-info 2026-04-07T16:10:07,374 running install_scripts 2026-04-07T16:10:07,394 creating build/bdist.linux-armv7l/wheel/pirlygenes-2.13.0.dist-info/WHEEL 2026-04-07T16:10:07,398 creating '/tmp/pip-wheel-2py329h7/.tmp-2byk4e0t/pirlygenes-2.13.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-07T16:10:07,402 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-07T16:10:07,404 adding 'pirlygenes/__init__.py' 2026-04-07T16:10:07,407 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-07T16:10:07,409 adding 'pirlygenes/cli.py' 2026-04-07T16:10:07,412 adding 'pirlygenes/common.py' 2026-04-07T16:10:07,415 adding 'pirlygenes/gene_ids.py' 2026-04-07T16:10:07,417 adding 'pirlygenes/gene_names.py' 2026-04-07T16:10:07,422 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-07T16:10:07,425 adding 'pirlygenes/gene_sets_old.py' 2026-04-07T16:10:07,427 adding 'pirlygenes/load_dataset.py' 2026-04-07T16:10:07,430 adding 'pirlygenes/load_expression.py' 2026-04-07T16:10:07,435 adding 'pirlygenes/plot.py' 2026-04-07T16:10:07,440 adding 'pirlygenes/plot_data_helpers.py' 2026-04-07T16:10:07,444 adding 'pirlygenes/transcript_to_gene.py' 2026-04-07T16:10:07,446 adding 'pirlygenes/version.py' 2026-04-07T16:10:07,450 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-07T16:10:07,456 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-07T16:10:07,459 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-07T16:10:07,461 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-07T16:10:07,464 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-07T16:10:07,469 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-07T16:10:07,472 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-07T16:10:07,480 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-07T16:10:07,484 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-07T16:10:07,488 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-07T16:10:07,497 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-07T16:10:07,501 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-07T16:10:07,504 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-07T16:10:07,506 adding 'pirlygenes/data/immune-gene-sets.csv' 2026-04-07T16:10:07,508 adding 'pirlygenes/data/interferon-response.csv' 2026-04-07T16:10:07,511 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-07T16:10:07,899 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-07T16:10:07,912 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-07T16:10:07,934 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-07T16:10:07,941 adding 'pirlygenes-2.13.0.dist-info/licenses/LICENSE' 2026-04-07T16:10:07,943 adding 'pirlygenes-2.13.0.dist-info/METADATA' 2026-04-07T16:10:07,945 adding 'pirlygenes-2.13.0.dist-info/WHEEL' 2026-04-07T16:10:07,946 adding 'pirlygenes-2.13.0.dist-info/entry_points.txt' 2026-04-07T16:10:07,947 adding 'pirlygenes-2.13.0.dist-info/top_level.txt' 2026-04-07T16:10:07,948 adding 'pirlygenes-2.13.0.dist-info/RECORD' 2026-04-07T16:10:07,968 removing build/bdist.linux-armv7l/wheel 2026-04-07T16:10:08,091 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-07T16:10:08,112 Created wheel for pirlygenes: filename=pirlygenes-2.13.0-py3-none-any.whl size=682044 sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d 2026-04-07T16:10:08,113 Stored in directory: /tmp/pip-ephem-wheel-cache-eobhskut/wheels/c7/0c/ec/0942d3b4150913c08d0f355ce9c3ae7dfe4826ea931db307f9 2026-04-07T16:10:08,127 Successfully built pirlygenes 2026-04-07T16:10:08,209 Removed build tracker: '/tmp/pip-build-tracker-cawge3ih'