2026-04-07T18:24:26,769 Created temporary directory: /tmp/pip-ephem-wheel-cache-tmr065al 2026-04-07T18:24:26,771 Created temporary directory: /tmp/pip-build-tracker-a1r8jy1j 2026-04-07T18:24:26,771 Initialized build tracking at /tmp/pip-build-tracker-a1r8jy1j 2026-04-07T18:24:26,772 Created build tracker: /tmp/pip-build-tracker-a1r8jy1j 2026-04-07T18:24:26,772 Entered build tracker: /tmp/pip-build-tracker-a1r8jy1j 2026-04-07T18:24:26,773 Created temporary directory: /tmp/pip-wheel-6vl8lppq 2026-04-07T18:24:26,775 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T18:24:26,778 Created temporary directory: /tmp/pip-ephem-wheel-cache-4dmkooz6 2026-04-07T18:24:26,802 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T18:24:26,805 2 location(s) to search for versions of topiary: 2026-04-07T18:24:26,805 * https://pypi.org/simple/topiary/ 2026-04-07T18:24:26,805 * https://www.piwheels.org/simple/topiary/ 2026-04-07T18:24:26,806 Fetching project page and analyzing links: https://pypi.org/simple/topiary/ 2026-04-07T18:24:26,807 Getting page https://pypi.org/simple/topiary/ 2026-04-07T18:24:26,808 Found index url https://pypi.org/simple 2026-04-07T18:24:27,036 Fetched page https://pypi.org/simple/topiary/ as application/vnd.pypi.simple.v1+json 2026-04-07T18:24:27,043 Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.0 2026-04-07T18:24:27,044 Found link https://files.pythonhosted.org/packages/40/7f/4c423389757bae0b47f7640d8b66bf9d5f5bbf6e387faa2dfa34fa0b809e/topiary-0.0.1.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.1 2026-04-07T18:24:27,044 Found link https://files.pythonhosted.org/packages/29/a2/eb5e9dec8dafc167f24cd4234a8d75b815411ea8b6af4724e8218038d52e/topiary-0.0.2.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.2 2026-04-07T18:24:27,045 Found link https://files.pythonhosted.org/packages/42/e4/e8450b31eac4229cfbe29bc87b8594ac1b03bc06f3272996cb3d50038c15/topiary-0.0.3.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.3 2026-04-07T18:24:27,046 Found link https://files.pythonhosted.org/packages/bc/ea/f0de38c2ba7970d28fe8404cd7bd32b2d041e7d3dc2027d7efff390e213c/topiary-0.0.4.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.4 2026-04-07T18:24:27,047 Found link https://files.pythonhosted.org/packages/92/85/fd3447ea12115e2274295bbdd728707a1e3870cf5e32dd63caa5ce17e0b2/topiary-0.0.5.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.5 2026-04-07T18:24:27,047 Found link https://files.pythonhosted.org/packages/03/98/eaceb57e744d5324a242e9b18e2e137e6c6960dca63c5cbfdb462d60e79f/topiary-0.0.6.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.6 2026-04-07T18:24:27,048 Found link https://files.pythonhosted.org/packages/6b/a2/9ac4d08a189dfa90e576d8bf8769249673d2dfd9cd2a9464674c56892501/topiary-0.0.7.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.7 2026-04-07T18:24:27,049 Found link https://files.pythonhosted.org/packages/6a/a5/a8446cebca687d391bbb67d26873adbbfa878d9b057a613f7756568911bb/topiary-0.0.8.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.8 2026-04-07T18:24:27,050 Found link https://files.pythonhosted.org/packages/19/7f/bf4d188a19634549a26b6b995a60146510435b5687a4c9afa5af01da4215/topiary-0.0.9.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.9 2026-04-07T18:24:27,050 Found link https://files.pythonhosted.org/packages/bb/b2/e507265c740fa360bf05b47f9e957ad5f8803233dd7c892979ee6d772e9b/topiary-0.0.10.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.10 2026-04-07T18:24:27,051 Found link https://files.pythonhosted.org/packages/d8/d8/d85f730eddd20a2df9d378a4d58a96d39e700c4fa109f1ead1a8f2509170/topiary-0.0.13.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.13 2026-04-07T18:24:27,052 Found link https://files.pythonhosted.org/packages/1a/e9/c5aad02530e1d64fc410dfc2e4eb32d4ace35d2367b6dbf9927b655e2af4/topiary-0.0.14.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.14 2026-04-07T18:24:27,053 Found link https://files.pythonhosted.org/packages/b1/4f/8410302ba478be063f5ba41028ad88db4dde24f4a2096643b9c55109b176/topiary-0.0.15.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.15 2026-04-07T18:24:27,053 Found link https://files.pythonhosted.org/packages/49/3a/ea68dc25b9c97e7fabecbbb5138c7be94eb3a9426f211db68f4c1ecd9ed4/topiary-0.0.16.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.16 2026-04-07T18:24:27,054 Found link https://files.pythonhosted.org/packages/6b/51/a9a4af9588db8d60bd38ca7851f85308bde8023ce09b12cb61687f68e2f6/topiary-0.0.17.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.17 2026-04-07T18:24:27,054 Found link https://files.pythonhosted.org/packages/ca/3c/01cb5d9e817ff2195d4579330d8b2d8b42e890d27109c8dd671253ea0a25/topiary-0.0.18.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.18 2026-04-07T18:24:27,055 Found link https://files.pythonhosted.org/packages/0e/4a/fbc62d6da7aeb1fa64fabd8d7f0836f5a079b0a098d9b2812b3158070672/topiary-0.0.19.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.19 2026-04-07T18:24:27,055 Found link https://files.pythonhosted.org/packages/8a/f7/6b7e6863daa1cb5125420e68e85c4da83490b0700a0cd743ff0505f49df0/topiary-0.0.20.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.20 2026-04-07T18:24:27,056 Found link https://files.pythonhosted.org/packages/0c/18/4fce39e2b363296333b7833c4624ad0fdfc799aab2771af18d5b13006be0/topiary-0.0.21.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.21 2026-04-07T18:24:27,057 Found link https://files.pythonhosted.org/packages/4f/8d/cfcda3d246e6a9dfd10fcda4de1b3cba171ffcf0508d3b8807f02765af1b/topiary-0.1.0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.0 2026-04-07T18:24:27,057 Found link https://files.pythonhosted.org/packages/f4/24/61c55b78e2597bbec4941edcf4161328f725f96836e20dd3b55e4d9d5fc3/topiary-0.1.1-0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.1-0 2026-04-07T18:24:27,058 Found link https://files.pythonhosted.org/packages/c4/6e/c3e2335ab2b5be7be8772ddd20bb158915ce5fdd0b11f8d55dea779638de/topiary-0.1.2.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.2 2026-04-07T18:24:27,059 Found link https://files.pythonhosted.org/packages/d3/fe/3b790a8e6401f8d7cfb50de1a4005e237f6c91ffa541c41524520c71e881/topiary-1.2.0.tar.gz (from https://pypi.org/simple/topiary/), version: 1.2.0 2026-04-07T18:24:27,060 Found link https://files.pythonhosted.org/packages/66/cd/6713c0c5cb9b5902943586a918f000ad4521e5d24a4ff32ee99b1d211167/topiary-1.2.1.tar.gz (from https://pypi.org/simple/topiary/), version: 1.2.1 2026-04-07T18:24:27,060 Found link https://files.pythonhosted.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.0.0 2026-04-07T18:24:27,061 Found link https://files.pythonhosted.org/packages/e2/13/7f3c8607ff3671a0d9f1f4eb58cb7f602ce540138329dee9a3bd581c84ea/topiary-2.1.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.1.0 2026-04-07T18:24:27,062 Found link https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.2.0 2026-04-07T18:24:27,062 Found link https://files.pythonhosted.org/packages/8a/d1/5ff5c84ea223c671f94c9f7df80481663f3bd0755bdbdd597e83fe52ca81/topiary-3.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.0 2026-04-07T18:24:27,063 Found link https://files.pythonhosted.org/packages/f0/e5/e560a7ec932717d57aa88285331314549bfb43565b014416db30f826ce61/topiary-3.0.2.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.2 2026-04-07T18:24:27,064 Found link https://files.pythonhosted.org/packages/b2/0b/b44009ee261861f74d13b506f7d69a1c44f2df1990d046f7a852a5fe6540/topiary-3.0.6.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.6 2026-04-07T18:24:27,065 Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/92/7e/4f1c24c87e1139b70f771b5b8248f28879e904b54c6b7bbf09ba52b3b019/topiary-4.0.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9) 2026-04-07T18:24:27,065 Found link https://files.pythonhosted.org/packages/ac/7a/aeb62683f7f6927facf941ff7afec97b8e4870a2ffd50769d17da45d2d39/topiary-4.0.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.0.0 2026-04-07T18:24:27,066 Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/5d/42/858c5ac8bdb667c2175917adcdf342bbd83a0a5dff92c78b9bc4250b678f/topiary-4.0.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9) 2026-04-07T18:24:27,067 Found link https://files.pythonhosted.org/packages/14/09/67a3423dc279acfc48e7597c866f55b375a3b927257eed1d5e6a89d5743a/topiary-4.0.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.0.1 2026-04-07T18:24:27,068 Fetching project page and analyzing links: https://www.piwheels.org/simple/topiary/ 2026-04-07T18:24:27,068 Getting page https://www.piwheels.org/simple/topiary/ 2026-04-07T18:24:27,070 Found index url https://www.piwheels.org/simple 2026-04-07T18:24:27,360 Fetched page https://www.piwheels.org/simple/topiary/ as text/html 2026-04-07T18:24:27,369 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.6-py3-none-any.whl#sha256=bbfaba8444095e39ed9ed8d14e7460f26f7c5d785e452bd44bcb533ef77fc8e4 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,370 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.2-py3-none-any.whl#sha256=8a9776d2965569019b41fbae3578df6ac218b66915ac8b5e209b73b7df1e4ac0 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,371 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.0-py3-none-any.whl#sha256=687e9928c772d363c854ecaf8e073eba63cbdaf8b974690d8f83f522fcd7723f (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,371 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.2.0-py3-none-any.whl#sha256=afb7b09b18f345de86420e8f1d61284c526a3bdcb0e352639c7383105203b2f9 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,372 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.1.0-py3-none-any.whl#sha256=6a54b133dc04b282ecb6254205dd09896a559c40a793a5470a1e8d77ed2244b1 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,373 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.0.0-py3-none-any.whl#sha256=bf376c02311efd5c80a0793be89ae4a34d82ab5397b5861dd664ce96d3e48a38 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,373 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.1-py3-none-any.whl#sha256=bc761dde043d0b6aa59153fc4cef4c3f4173d9cc2af622fc8263962c2fc21f0d (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,374 Skipping link: No binaries permitted for topiary: 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https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,376 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.20-py3-none-any.whl#sha256=3fb43551e5d6896e3e54f5a33a29922523c71c15b3849801206d04a8c4805350 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,377 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.19-py3-none-any.whl#sha256=0bdd9a0f991558f802326026fec79812c40392013a16fa27d697a9c37d0cf12c (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,377 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.18-py3-none-any.whl#sha256=9e812f2912a401afd7be2c4905413e0c158d97a57ddd49a478edb0b8d9805a28 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,378 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.17-py3-none-any.whl#sha256=9caa65a5a200720510e1c38a256ba0ee4702a443d0c0f9e56724aaa16b907517 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,378 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.16-py3-none-any.whl#sha256=1cce9bca3cbb426edd71bbf7bbd1c069b0498c46d67ce549315317b0f75ab1d6 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,379 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.15-py3-none-any.whl#sha256=ca5ae7481368a4fb5d839d1ac3cab6823cbebeb2733ef0e9c6b2275854eb895f (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,379 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.14-py3-none-any.whl#sha256=48e8744f89c7f03717c8e36a17ede28b495b845c7106cb5638c216db27054fad (from 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https://archive1.piwheels.org/simple/topiary/topiary-0.0.8-py3-none-any.whl#sha256=12b4f283d8fbedbd316649be8833a17fee852097f1e5cd8963264e6c4a2721e0 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,382 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.7-py3-none-any.whl#sha256=6e23dbd38e19c12b658a8373b501f1e929c6fd3420749dee506a82b60b190d42 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,383 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.6-py3-none-any.whl#sha256=f3b597a0744c3a7540c3ffe571b8f4fad3d2ad40ddc6198952e2aee7c96ff82c (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,384 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.5-py3-none-any.whl#sha256=52f489eb5876b619e9988ee4c2fabec4df1a087c2f67f96cbb99ece92eb57576 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,385 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.4-py3-none-any.whl#sha256=5c94fb56e54399233efc5f88a6f6cfe2914773c5b2aa67a24f6ddf6089561b3b (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,385 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.3-py3-none-any.whl#sha256=197f9da38cd367d77acaec6282f0d22aefaf1e1ab6754379f671902958348f15 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,385 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.2-py3-none-any.whl#sha256=accaff90bafe6c929aece0f65b8ccedd45839064bf361d8f69bfefd543127ec2 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,386 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.1-py3-none-any.whl#sha256=6743a02aee34bc7567913bbe5c15a321924d9e1cb2c15f956e4ebb9b321707f4 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,386 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.0-py3-none-any.whl#sha256=a4de4e13dc8561c43fd350094d3cbc3267e0faacf5e65b94501ef15affdf51e6 (from https://www.piwheels.org/simple/topiary/) 2026-04-07T18:24:27,387 Skipping link: not a file: https://www.piwheels.org/simple/topiary/ 2026-04-07T18:24:27,387 Skipping link: not a file: https://pypi.org/simple/topiary/ 2026-04-07T18:24:27,412 Given no hashes to check 1 links for project 'topiary': discarding no candidates 2026-04-07T18:24:27,432 Collecting topiary==4.0.0 2026-04-07T18:24:27,435 Created temporary directory: /tmp/pip-unpack-cq8xi_5a 2026-04-07T18:24:27,661 Downloading topiary-4.0.0.tar.gz (29 kB) 2026-04-07T18:24:27,799 Added topiary==4.0.0 from https://files.pythonhosted.org/packages/ac/7a/aeb62683f7f6927facf941ff7afec97b8e4870a2ffd50769d17da45d2d39/topiary-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-a1r8jy1j' 2026-04-07T18:24:27,804 Created temporary directory: /tmp/pip-build-env-crakxpfp 2026-04-07T18:24:27,808 Installing build dependencies: started 2026-04-07T18:24:27,810 Running command pip subprocess to install build dependencies 2026-04-07T18:24:28,928 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-07T18:24:29,367 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-07T18:24:29,390 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-07T18:24:31,167 Collecting setuptools>=64 2026-04-07T18:24:31,255 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-07T18:24:34,222 Installing collected packages: setuptools 2026-04-07T18:24:37,315 Successfully installed setuptools-82.0.1 2026-04-07T18:24:37,582 Installing build dependencies: finished with status 'done' 2026-04-07T18:24:37,588 Getting requirements to build wheel: started 2026-04-07T18:24:37,589 Running command Getting requirements to build wheel 2026-04-07T18:24:38,275 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:38,276 !! 2026-04-07T18:24:38,277 ******************************************************************************** 2026-04-07T18:24:38,278 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:38,278 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:38,279 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:38,280 ******************************************************************************** 2026-04-07T18:24:38,281 !! 2026-04-07T18:24:38,281 dist._finalize_license_expression() 2026-04-07T18:24:38,282 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:38,282 !! 2026-04-07T18:24:38,283 ******************************************************************************** 2026-04-07T18:24:38,284 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:38,284 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:38,285 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:38,286 ******************************************************************************** 2026-04-07T18:24:38,287 !! 2026-04-07T18:24:38,287 self._finalize_license_expression() 2026-04-07T18:24:38,288 running egg_info 2026-04-07T18:24:38,294 writing topiary.egg-info/PKG-INFO 2026-04-07T18:24:38,298 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-04-07T18:24:38,300 writing entry points to topiary.egg-info/entry_points.txt 2026-04-07T18:24:38,302 writing requirements to topiary.egg-info/requires.txt 2026-04-07T18:24:38,303 writing top-level names to topiary.egg-info/top_level.txt 2026-04-07T18:24:38,327 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:38,331 adding license file 'LICENSE' 2026-04-07T18:24:38,335 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:38,432 Getting requirements to build wheel: finished with status 'done' 2026-04-07T18:24:38,435 Created temporary directory: /tmp/pip-modern-metadata-30ful50n 2026-04-07T18:24:38,438 Preparing metadata (pyproject.toml): started 2026-04-07T18:24:38,439 Running command Preparing metadata (pyproject.toml) 2026-04-07T18:24:39,072 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:39,072 !! 2026-04-07T18:24:39,073 ******************************************************************************** 2026-04-07T18:24:39,074 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:39,075 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:39,076 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:39,076 ******************************************************************************** 2026-04-07T18:24:39,078 !! 2026-04-07T18:24:39,078 dist._finalize_license_expression() 2026-04-07T18:24:39,079 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:39,080 !! 2026-04-07T18:24:39,081 ******************************************************************************** 2026-04-07T18:24:39,081 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:39,083 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:39,084 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:39,084 ******************************************************************************** 2026-04-07T18:24:39,086 !! 2026-04-07T18:24:39,086 self._finalize_license_expression() 2026-04-07T18:24:39,087 running dist_info 2026-04-07T18:24:39,096 creating /tmp/pip-modern-metadata-30ful50n/topiary.egg-info 2026-04-07T18:24:39,098 writing /tmp/pip-modern-metadata-30ful50n/topiary.egg-info/PKG-INFO 2026-04-07T18:24:39,101 writing dependency_links to /tmp/pip-modern-metadata-30ful50n/topiary.egg-info/dependency_links.txt 2026-04-07T18:24:39,103 writing entry points to /tmp/pip-modern-metadata-30ful50n/topiary.egg-info/entry_points.txt 2026-04-07T18:24:39,105 writing requirements to /tmp/pip-modern-metadata-30ful50n/topiary.egg-info/requires.txt 2026-04-07T18:24:39,106 writing top-level names to /tmp/pip-modern-metadata-30ful50n/topiary.egg-info/top_level.txt 2026-04-07T18:24:39,107 writing manifest file '/tmp/pip-modern-metadata-30ful50n/topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:39,128 reading manifest file '/tmp/pip-modern-metadata-30ful50n/topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:39,130 adding license file 'LICENSE' 2026-04-07T18:24:39,134 writing manifest file '/tmp/pip-modern-metadata-30ful50n/topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:39,135 creating '/tmp/pip-modern-metadata-30ful50n/topiary-4.0.0.dist-info' 2026-04-07T18:24:39,264 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-07T18:24:39,269 Source in /tmp/pip-wheel-6vl8lppq/topiary_49d7ee2edd57405b946d06f9f542e94e has version 4.0.0, which satisfies requirement topiary==4.0.0 from https://files.pythonhosted.org/packages/ac/7a/aeb62683f7f6927facf941ff7afec97b8e4870a2ffd50769d17da45d2d39/topiary-4.0.0.tar.gz 2026-04-07T18:24:39,270 Removed topiary==4.0.0 from https://files.pythonhosted.org/packages/ac/7a/aeb62683f7f6927facf941ff7afec97b8e4870a2ffd50769d17da45d2d39/topiary-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-a1r8jy1j' 2026-04-07T18:24:39,276 Created temporary directory: /tmp/pip-unpack-ybooc9a2 2026-04-07T18:24:39,277 Building wheels for collected packages: topiary 2026-04-07T18:24:39,282 Created temporary directory: /tmp/pip-wheel-s7xyy9vd 2026-04-07T18:24:39,282 Destination directory: /tmp/pip-wheel-s7xyy9vd 2026-04-07T18:24:39,285 Building wheel for topiary (pyproject.toml): started 2026-04-07T18:24:39,286 Running command Building wheel for topiary (pyproject.toml) 2026-04-07T18:24:39,910 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:39,911 !! 2026-04-07T18:24:39,912 ******************************************************************************** 2026-04-07T18:24:39,913 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:39,914 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:39,915 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:39,916 ******************************************************************************** 2026-04-07T18:24:39,917 !! 2026-04-07T18:24:39,917 dist._finalize_license_expression() 2026-04-07T18:24:39,918 /tmp/pip-build-env-crakxpfp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-07T18:24:39,919 !! 2026-04-07T18:24:39,920 ******************************************************************************** 2026-04-07T18:24:39,921 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-07T18:24:39,922 License :: OSI Approved :: Apache Software License 2026-04-07T18:24:39,923 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-07T18:24:39,924 ******************************************************************************** 2026-04-07T18:24:39,926 !! 2026-04-07T18:24:39,926 self._finalize_license_expression() 2026-04-07T18:24:39,926 running bdist_wheel 2026-04-07T18:24:39,936 running build 2026-04-07T18:24:39,936 running build_py 2026-04-07T18:24:39,942 creating build/lib/topiary 2026-04-07T18:24:39,944 copying topiary/sequence_helpers.py -> build/lib/topiary 2026-04-07T18:24:39,947 copying topiary/__init__.py -> build/lib/topiary 2026-04-07T18:24:39,948 copying topiary/filters.py -> build/lib/topiary 2026-04-07T18:24:39,951 copying topiary/predictor.py -> build/lib/topiary 2026-04-07T18:24:39,954 creating build/lib/tests 2026-04-07T18:24:39,955 copying tests/test_dataframe.py -> build/lib/tests 2026-04-07T18:24:39,957 copying tests/test_padding.py -> build/lib/tests 2026-04-07T18:24:39,959 copying tests/test_mutant_epitope_predictions_class2.py -> build/lib/tests 2026-04-07T18:24:39,961 copying tests/test_args_outputs.py -> build/lib/tests 2026-04-07T18:24:39,963 copying tests/test_cli_protein_changes.py -> build/lib/tests 2026-04-07T18:24:39,964 copying tests/common.py -> build/lib/tests 2026-04-07T18:24:39,966 copying tests/__init__.py -> build/lib/tests 2026-04-07T18:24:39,968 copying tests/test_mutant_epitope_predictions_class1.py -> build/lib/tests 2026-04-07T18:24:39,970 copying tests/test_load_stringtie_gtf_fpkm.py -> build/lib/tests 2026-04-07T18:24:39,972 copying tests/test_rna_helpers.py -> build/lib/tests 2026-04-07T18:24:39,973 copying tests/data.py -> build/lib/tests 2026-04-07T18:24:39,975 copying tests/test_variant_expression_filters.py -> build/lib/tests 2026-04-07T18:24:39,977 copying tests/test_epitopes_from_commandline_args.py -> build/lib/tests 2026-04-07T18:24:39,979 copying tests/test_effect_expression_filters.py -> build/lib/tests 2026-04-07T18:24:39,981 copying tests/test_contains_mutant_residues.py -> build/lib/tests 2026-04-07T18:24:39,983 copying tests/test_peptide_mutation_interval.py -> build/lib/tests 2026-04-07T18:24:39,985 copying tests/test_load_cufflinks_fpkm.py -> build/lib/tests 2026-04-07T18:24:39,988 creating build/lib/topiary/cli 2026-04-07T18:24:39,989 copying topiary/cli/filtering.py -> build/lib/topiary/cli 2026-04-07T18:24:39,991 copying topiary/cli/sequence.py -> build/lib/topiary/cli 2026-04-07T18:24:39,993 copying topiary/cli/outputs.py -> build/lib/topiary/cli 2026-04-07T18:24:39,995 copying topiary/cli/script.py -> build/lib/topiary/cli 2026-04-07T18:24:39,997 copying topiary/cli/__init__.py -> build/lib/topiary/cli 2026-04-07T18:24:39,999 copying topiary/cli/errors.py -> build/lib/topiary/cli 2026-04-07T18:24:40,000 copying topiary/cli/rna.py -> build/lib/topiary/cli 2026-04-07T18:24:40,002 copying topiary/cli/args.py -> build/lib/topiary/cli 2026-04-07T18:24:40,004 copying topiary/cli/protein_changes.py -> build/lib/topiary/cli 2026-04-07T18:24:40,007 creating build/lib/topiary/rna 2026-04-07T18:24:40,008 copying topiary/rna/cufflinks.py -> build/lib/topiary/rna 2026-04-07T18:24:40,010 copying topiary/rna/common.py -> build/lib/topiary/rna 2026-04-07T18:24:40,012 copying topiary/rna/__init__.py -> build/lib/topiary/rna 2026-04-07T18:24:40,014 copying topiary/rna/gtf.py -> build/lib/topiary/rna 2026-04-07T18:24:40,016 running egg_info 2026-04-07T18:24:40,025 writing topiary.egg-info/PKG-INFO 2026-04-07T18:24:40,028 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-04-07T18:24:40,030 writing entry points to topiary.egg-info/entry_points.txt 2026-04-07T18:24:40,031 writing requirements to topiary.egg-info/requires.txt 2026-04-07T18:24:40,032 writing top-level names to topiary.egg-info/top_level.txt 2026-04-07T18:24:40,045 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:40,049 adding license file 'LICENSE' 2026-04-07T18:24:40,053 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-07T18:24:40,067 installing to build/bdist.linux-armv7l/wheel 2026-04-07T18:24:40,068 running install 2026-04-07T18:24:40,091 running install_lib 2026-04-07T18:24:40,097 creating build/bdist.linux-armv7l/wheel 2026-04-07T18:24:40,099 creating build/bdist.linux-armv7l/wheel/topiary 2026-04-07T18:24:40,100 copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-07T18:24:40,104 creating build/bdist.linux-armv7l/wheel/topiary/cli 2026-04-07T18:24:40,104 copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,107 copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,109 copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,110 copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,112 copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,114 copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,116 copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,118 copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,120 copying build/lib/topiary/cli/protein_changes.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-07T18:24:40,122 creating build/bdist.linux-armv7l/wheel/topiary/rna 2026-04-07T18:24:40,123 copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-07T18:24:40,125 copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-07T18:24:40,127 copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-07T18:24:40,129 copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-07T18:24:40,131 copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-07T18:24:40,133 copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-07T18:24:40,135 copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-07T18:24:40,138 creating build/bdist.linux-armv7l/wheel/tests 2026-04-07T18:24:40,139 copying build/lib/tests/test_dataframe.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,141 copying build/lib/tests/test_padding.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,143 copying build/lib/tests/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,145 copying build/lib/tests/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,147 copying build/lib/tests/test_cli_protein_changes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,149 copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,150 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,152 copying build/lib/tests/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,154 copying build/lib/tests/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,156 copying build/lib/tests/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,158 copying build/lib/tests/data.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,159 copying build/lib/tests/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,161 copying build/lib/tests/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,163 copying build/lib/tests/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,165 copying build/lib/tests/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,167 copying build/lib/tests/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,169 copying build/lib/tests/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-07T18:24:40,171 running install_egg_info 2026-04-07T18:24:40,176 Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/./topiary-4.0.0-py3.11.egg-info 2026-04-07T18:24:40,188 running install_scripts 2026-04-07T18:24:40,200 creating build/bdist.linux-armv7l/wheel/topiary-4.0.0.dist-info/WHEEL 2026-04-07T18:24:40,203 creating '/tmp/pip-wheel-s7xyy9vd/.tmp-vmakgswo/topiary-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-07T18:24:40,205 adding 'tests/__init__.py' 2026-04-07T18:24:40,206 adding 'tests/common.py' 2026-04-07T18:24:40,208 adding 'tests/data.py' 2026-04-07T18:24:40,209 adding 'tests/test_args_outputs.py' 2026-04-07T18:24:40,210 adding 'tests/test_cli_protein_changes.py' 2026-04-07T18:24:40,212 adding 'tests/test_contains_mutant_residues.py' 2026-04-07T18:24:40,213 adding 'tests/test_dataframe.py' 2026-04-07T18:24:40,214 adding 'tests/test_effect_expression_filters.py' 2026-04-07T18:24:40,216 adding 'tests/test_epitopes_from_commandline_args.py' 2026-04-07T18:24:40,217 adding 'tests/test_load_cufflinks_fpkm.py' 2026-04-07T18:24:40,218 adding 'tests/test_load_stringtie_gtf_fpkm.py' 2026-04-07T18:24:40,219 adding 'tests/test_mutant_epitope_predictions_class1.py' 2026-04-07T18:24:40,221 adding 'tests/test_mutant_epitope_predictions_class2.py' 2026-04-07T18:24:40,222 adding 'tests/test_padding.py' 2026-04-07T18:24:40,223 adding 'tests/test_peptide_mutation_interval.py' 2026-04-07T18:24:40,224 adding 'tests/test_rna_helpers.py' 2026-04-07T18:24:40,225 adding 'tests/test_variant_expression_filters.py' 2026-04-07T18:24:40,227 adding 'topiary/__init__.py' 2026-04-07T18:24:40,229 adding 'topiary/filters.py' 2026-04-07T18:24:40,231 adding 'topiary/predictor.py' 2026-04-07T18:24:40,233 adding 'topiary/sequence_helpers.py' 2026-04-07T18:24:40,235 adding 'topiary/cli/__init__.py' 2026-04-07T18:24:40,236 adding 'topiary/cli/args.py' 2026-04-07T18:24:40,237 adding 'topiary/cli/errors.py' 2026-04-07T18:24:40,239 adding 'topiary/cli/filtering.py' 2026-04-07T18:24:40,240 adding 'topiary/cli/outputs.py' 2026-04-07T18:24:40,242 adding 'topiary/cli/protein_changes.py' 2026-04-07T18:24:40,243 adding 'topiary/cli/rna.py' 2026-04-07T18:24:40,244 adding 'topiary/cli/script.py' 2026-04-07T18:24:40,245 adding 'topiary/cli/sequence.py' 2026-04-07T18:24:40,247 adding 'topiary/rna/__init__.py' 2026-04-07T18:24:40,249 adding 'topiary/rna/common.py' 2026-04-07T18:24:40,250 adding 'topiary/rna/cufflinks.py' 2026-04-07T18:24:40,252 adding 'topiary/rna/gtf.py' 2026-04-07T18:24:40,255 adding 'topiary-4.0.0.dist-info/licenses/LICENSE' 2026-04-07T18:24:40,257 adding 'topiary-4.0.0.dist-info/METADATA' 2026-04-07T18:24:40,258 adding 'topiary-4.0.0.dist-info/WHEEL' 2026-04-07T18:24:40,259 adding 'topiary-4.0.0.dist-info/entry_points.txt' 2026-04-07T18:24:40,260 adding 'topiary-4.0.0.dist-info/top_level.txt' 2026-04-07T18:24:40,261 adding 'topiary-4.0.0.dist-info/RECORD' 2026-04-07T18:24:40,263 removing build/bdist.linux-armv7l/wheel 2026-04-07T18:24:40,371 Building wheel for topiary (pyproject.toml): finished with status 'done' 2026-04-07T18:24:40,376 Created wheel for topiary: filename=topiary-4.0.0-py3-none-any.whl size=41417 sha256=56965eea765f6d31c879ce179bee7f0f3efad79829b782938aa6571f012a774f 2026-04-07T18:24:40,378 Stored in directory: /tmp/pip-ephem-wheel-cache-4dmkooz6/wheels/21/dd/15/20126e0c1c576f4f8cf396d766ce4aeca1e545799268920391 2026-04-07T18:24:40,390 Successfully built topiary 2026-04-07T18:24:40,394 Removed build tracker: '/tmp/pip-build-tracker-a1r8jy1j'