2026-04-08T10:44:34,998 Created temporary directory: /tmp/pip-ephem-wheel-cache-lnb80ioq 2026-04-08T10:44:35,000 Created temporary directory: /tmp/pip-build-tracker-nl1riq36 2026-04-08T10:44:35,001 Initialized build tracking at /tmp/pip-build-tracker-nl1riq36 2026-04-08T10:44:35,001 Created build tracker: /tmp/pip-build-tracker-nl1riq36 2026-04-08T10:44:35,002 Entered build tracker: /tmp/pip-build-tracker-nl1riq36 2026-04-08T10:44:35,003 Created temporary directory: /tmp/pip-wheel-21nvb70y 2026-04-08T10:44:35,006 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-08T10:44:35,008 Created temporary directory: /tmp/pip-ephem-wheel-cache-qchgfjwq 2026-04-08T10:44:35,030 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-08T10:44:35,034 2 location(s) to search for versions of sequana-variant-calling: 2026-04-08T10:44:35,034 * https://pypi.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,034 * https://www.piwheels.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,035 Fetching project page and analyzing links: https://pypi.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,036 Getting page https://pypi.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,037 Found index url https://pypi.org/simple 2026-04-08T10:44:35,264 Fetched page https://pypi.org/simple/sequana-variant-calling/ as application/vnd.pypi.simple.v1+json 2026-04-08T10:44:35,271 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/df/c893a08b471c537ca9941a06b711d924b5b4b10b7321128c43d940f1a3fb/sequana_variant_calling-0.8.0-py3.5.egg (from https://pypi.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,271 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a5/3e/63014a9792a51a23e198e0574e32da60d8e615ac877752463ed4f5f1e147/sequana_variant_calling-0.8.1-py3.5.egg (from https://pypi.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,272 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/30/e7/2e7052bff8e49aea35fc674af929e40b0a683f353958da50ac9133c9a1fe/sequana_variant_calling-0.8.2-py3.5.egg (from https://pypi.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,272 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/42/3f/b11c629fbd7ed8937b1c827db65017aa348fd3073c2a6aee048ddef7630b/sequana_variant_calling-0.8.3-py3.5.egg (from https://pypi.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,273 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/79/456b5c7ee7867d8e92821c7011a365b183806a2a350b8a4abfcaa73d0186/sequana_variant_calling-0.8.4-py3.5.egg (from https://pypi.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,274 Found link https://files.pythonhosted.org/packages/c3/9b/107b8e187a492fbd3b9f95917cc57f2bc668409a7764acffaa2c59a00faf/sequana_variant_calling-0.8.4.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.4 2026-04-08T10:44:35,274 Found link https://files.pythonhosted.org/packages/25/6a/02aab9a14bbb62abdb5551bfbe7ca41c09417d5be35de222e2331c2f4012/sequana_variant_calling-0.8.5.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.5 2026-04-08T10:44:35,275 Found link 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link https://files.pythonhosted.org/packages/e1/4a/8f2c250a85c2d42109a179d71aea5c53d1d5d494fd2690cb11586bb66cfb/sequana_variant_calling-0.9.2.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.2 2026-04-08T10:44:35,279 Found link https://files.pythonhosted.org/packages/e6/4a/a9a6144d197a3ebb4d75a7f751731375e854e79ad61cb4021399022afc8e/sequana_variant_calling-0.9.3.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.3 2026-04-08T10:44:35,279 Found link https://files.pythonhosted.org/packages/e3/de/e28ecb5381b8eaf1f02bb54a7ac89bf237f7e99f70f779c1789b16f483dc/sequana_variant_calling-0.9.4.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.4 2026-04-08T10:44:35,280 Found link https://files.pythonhosted.org/packages/f6/7a/2416ca01266ad1e0eb3e91bea899727e48368562ca4598f1ba4633a7154d/sequana_variant_calling-0.9.5.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.5 2026-04-08T10:44:35,281 Found link https://files.pythonhosted.org/packages/96/97/16c238324bcb3028380622a46c639237e17b56083f5a174c15fe83565b84/sequana_variant_calling-0.10.0.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.10.0 2026-04-08T10:44:35,281 Found link https://files.pythonhosted.org/packages/c5/5b/a371a1cfc200d9c486e8ed27936f06b63f4ded17918efc949317c3a90dc6/sequana_variant_calling-0.11.0.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.11.0 2026-04-08T10:44:35,282 Found link https://files.pythonhosted.org/packages/8c/43/79ee532772967ddf822857c5f45ab1f0b6249a5d1eb604ef5449f86dfadd/sequana_variant_calling-0.12.0.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 0.12.0 2026-04-08T10:44:35,282 Found link https://files.pythonhosted.org/packages/6d/c5/bac62ec61c33ed403f28d0d32e860d981c2e16c31e3ac4ef4b6eb009f1c0/sequana_variant_calling-1.0.0.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 1.0.0 2026-04-08T10:44:35,283 Found link https://files.pythonhosted.org/packages/31/ef/6beb7c569e50e63a69eecce80dfb0cb5124728421e52505c9e376614c443/sequana_variant_calling-1.0.1.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 1.0.1 2026-04-08T10:44:35,284 Found link https://files.pythonhosted.org/packages/09/19/37b03efc9ec706f44c27ddc2e1303745f4b4e057c86e94bedc8772f73f1b/sequana_variant_calling-1.0.2.tar.gz (from https://pypi.org/simple/sequana-variant-calling/), version: 1.0.2 2026-04-08T10:44:35,284 Skipping link: No binaries permitted for sequana-variant-calling: https://files.pythonhosted.org/packages/f8/03/019009723efab9e15677a19bdf10d358c17dd0fea181fceb1bbc0bf3c3e2/sequana_variant_calling-1.1.0-py3-none-any.whl (from https://pypi.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,285 Found link 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https://files.pythonhosted.org/packages/e6/d1/a46b12b4890c52e20ba27ac6a63a397dab768c48070a376852e73f1b90c6/sequana_variant_calling-1.1.2-py3-none-any.whl (from https://pypi.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,289 Found link https://files.pythonhosted.org/packages/ba/99/7f9ae1a75c45fa49911b16622e96248ccf67572e6dec850585b7562badab/sequana_variant_calling-1.1.2.tar.gz (from https://pypi.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0), version: 1.1.2 2026-04-08T10:44:35,289 Skipping link: No binaries permitted for sequana-variant-calling: https://files.pythonhosted.org/packages/37/79/fd9316345201561a7b138307875787d7f46f62ad8d49a64eced81d24d093/sequana_variant_calling-1.2.0-py3-none-any.whl (from https://pypi.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,290 Found link 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https://files.pythonhosted.org/packages/da/c4/5f0c2d627a93e2edf2257facce36a022a07b78a8e26f98030b95b5fa1c07/sequana_variant_calling-1.5.0.tar.gz (from https://pypi.org/simple/sequana-variant-calling/) (requires-python:<4.0,>=3.9), version: 1.5.0 2026-04-08T10:44:35,294 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,294 Getting page https://www.piwheels.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,296 Found index url https://www.piwheels.org/simple 2026-04-08T10:44:35,475 Fetched page https://www.piwheels.org/simple/sequana-variant-calling/ as text/html 2026-04-08T10:44:35,482 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.3.0-py3-none-any.whl#sha256=ba8fa90e6372d733e58c73b934e434e29ac62f8c3a25e88927e5444a11ab5bd9 (from https://www.piwheels.org/simple/sequana-variant-calling/) (requires-python:>=3.9,<4.0) 2026-04-08T10:44:35,483 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.2.0-py3-none-any.whl#sha256=35d7d29a7e828c7af0646b63a8bf583fd9f675855d04a8d0058a01d4ff32dac8 (from https://www.piwheels.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,484 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.1.2-py3-none-any.whl#sha256=6667ab0ab67b7ee52d199a16afe972f9bfee5a492c941553782a52b6c1d5319c (from https://www.piwheels.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,484 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.1.1-py3-none-any.whl#sha256=b2d27985d34c96773e9a6e753a3a59ba97e092c5cdf814c15fe8c1a0192f2e27 (from https://www.piwheels.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,485 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.1.0-py3-none-any.whl#sha256=647e8e4be51f1e3b4986d33b6825bf7896669912bb452c77f3ff0ab06ece1657 (from https://www.piwheels.org/simple/sequana-variant-calling/) (requires-python:>=3.8,<4.0) 2026-04-08T10:44:35,485 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.0.2-py3-none-any.whl#sha256=7f8da3fb28eeae815f06fd0497ecaf2362a2092871233647da6ad24c1ff48bd0 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,486 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.0.1-py3-none-any.whl#sha256=7806578ff18913f1718215f106679cf68572d1e3257cebac518f02b486f59c74 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,486 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-1.0.0-py3-none-any.whl#sha256=c5de629c956845fb1675abb738b74fab5c025d0623c41dba0cb22dc60c020147 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,487 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.12.0-py3-none-any.whl#sha256=cddee99bb0ffc4cdd89eb88c88807088497f730be5348e6eff2ba5aecaa37903 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,488 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.11.0-py3-none-any.whl#sha256=5f3c9cb5f10d516228303fe38ce9c75c75074e086e1aadb8030d0b40f9e911a0 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,488 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.10.0-py3-none-any.whl#sha256=42d06a960cc388df444fef1ac4e7f85ff63d31f2faf896c1609a4e423c1a49cd (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,489 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.5-py3-none-any.whl#sha256=d81286932c2c6d2e4da09fd160f9d3a7f0632bcbfb3349f445ab8a6c4a788888 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,489 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.4-py3-none-any.whl#sha256=bbab12f48c6238be7e6559f93f5448790579e6d481f00d968b8a513cfdbdc032 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,490 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.3-py3-none-any.whl#sha256=7709abb7395707484f12525714c3343749076a7273ed22ebc0fd477b1a88f398 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,491 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.2-py3-none-any.whl#sha256=855d452d20c04ce06f52c0cbfaf8ccc1ebf4aa2f6c6148a9da253e06e2250746 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,491 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.1-py3-none-any.whl#sha256=d2e2b6952759c27225135b2c04569826335377171e9be061a3763397df847118 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,492 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.9.0-py3-none-any.whl#sha256=40334ec0a05a4ca0704b57844aec87b136f92f836d55c642419a02b7e084631c (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,492 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.8.7-py3-none-any.whl#sha256=902828d511277761affdd0481c6dcaf3073b328d3df9caa5fe4bf5183dab594a (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,493 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.8.6-py3-none-any.whl#sha256=97d98d544cccdbd35d2ca3636136b122880dee02908ec041695f7146b9003799 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,494 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.8.5-py3-none-any.whl#sha256=117ce276f7967d7296d73f535fc076cfef44e4987191a481cf1e3e2104f39be7 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,494 Skipping link: No binaries permitted for sequana-variant-calling: https://archive1.piwheels.org/simple/sequana-variant-calling/sequana_variant_calling-0.8.4-py3-none-any.whl#sha256=99b11288616f743d90f121a0fb81503f4e1955947266a114b2bc304ba7cf2b79 (from https://www.piwheels.org/simple/sequana-variant-calling/) 2026-04-08T10:44:35,495 Skipping link: not a file: https://www.piwheels.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,495 Skipping link: not a file: https://pypi.org/simple/sequana-variant-calling/ 2026-04-08T10:44:35,518 Given no hashes to check 1 links for project 'sequana-variant-calling': discarding no candidates 2026-04-08T10:44:35,538 Collecting sequana-variant-calling==1.5.0 2026-04-08T10:44:35,540 Created temporary directory: /tmp/pip-unpack-o4mlp2ez 2026-04-08T10:44:35,690 Downloading sequana_variant_calling-1.5.0.tar.gz (122 kB) 2026-04-08T10:44:35,815 Added sequana-variant-calling==1.5.0 from https://files.pythonhosted.org/packages/da/c4/5f0c2d627a93e2edf2257facce36a022a07b78a8e26f98030b95b5fa1c07/sequana_variant_calling-1.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-nl1riq36' 2026-04-08T10:44:35,820 Created temporary directory: /tmp/pip-build-env-8fpvo2b4 2026-04-08T10:44:35,824 Installing build dependencies: started 2026-04-08T10:44:35,825 Running command pip subprocess to install build dependencies 2026-04-08T10:44:36,948 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-08T10:44:37,393 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-08T10:44:37,415 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-08T10:44:37,989 Collecting poetry-core>=1.0.0 2026-04-08T10:44:38,022 Using cached https://www.piwheels.org/simple/poetry-core/poetry_core-2.3.2-py3-none-any.whl (340 kB) 2026-04-08T10:44:40,607 Installing collected packages: poetry-core 2026-04-08T10:44:41,841 Successfully installed poetry-core-2.3.2 2026-04-08T10:44:42,069 Installing build dependencies: finished with status 'done' 2026-04-08T10:44:42,076 Getting requirements to build wheel: started 2026-04-08T10:44:42,078 Running command Getting requirements to build wheel 2026-04-08T10:44:42,587 Getting requirements to build wheel: finished with status 'done' 2026-04-08T10:44:42,590 Created temporary directory: /tmp/pip-modern-metadata-mrxrgihr 2026-04-08T10:44:42,593 Preparing metadata (pyproject.toml): started 2026-04-08T10:44:42,594 Running command Preparing metadata (pyproject.toml) 2026-04-08T10:44:43,586 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-08T10:44:43,592 Source in /tmp/pip-wheel-21nvb70y/sequana-variant-calling_f4dc4b827bb74886b58f2efcac8811cc has version 1.5.0, which satisfies requirement sequana-variant-calling==1.5.0 from https://files.pythonhosted.org/packages/da/c4/5f0c2d627a93e2edf2257facce36a022a07b78a8e26f98030b95b5fa1c07/sequana_variant_calling-1.5.0.tar.gz 2026-04-08T10:44:43,593 Removed sequana-variant-calling==1.5.0 from https://files.pythonhosted.org/packages/da/c4/5f0c2d627a93e2edf2257facce36a022a07b78a8e26f98030b95b5fa1c07/sequana_variant_calling-1.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-nl1riq36' 2026-04-08T10:44:43,599 Created temporary directory: /tmp/pip-unpack-h7l84ksa 2026-04-08T10:44:43,599 Building wheels for collected packages: sequana-variant-calling 2026-04-08T10:44:43,604 Created temporary directory: /tmp/pip-wheel-jq7qpd_5 2026-04-08T10:44:43,604 Destination directory: /tmp/pip-wheel-jq7qpd_5 2026-04-08T10:44:43,606 Building wheel for sequana-variant-calling (pyproject.toml): started 2026-04-08T10:44:43,607 Running command Building wheel for sequana-variant-calling (pyproject.toml) 2026-04-08T10:44:44,638 Building wheel for sequana-variant-calling (pyproject.toml): finished with status 'done' 2026-04-08T10:44:44,645 Created wheel for sequana-variant-calling: filename=sequana_variant_calling-1.5.0-py3-none-any.whl size=119856 sha256=7c588884dcfe55034408cb0651a039278be6a5e990dcb4b0c05b6fdb8695b54c 2026-04-08T10:44:44,646 Stored in directory: /tmp/pip-ephem-wheel-cache-qchgfjwq/wheels/fe/46/45/3e293bae75d8af1ea06310a961208b12f0d44be4d5307487f0 2026-04-08T10:44:44,657 Successfully built sequana-variant-calling 2026-04-08T10:44:44,663 Removed build tracker: '/tmp/pip-build-tracker-nl1riq36'