2026-04-08T17:34:11,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-vcujb51i 2026-04-08T17:34:11,957 Created temporary directory: /tmp/pip-build-tracker-0ie0oh5f 2026-04-08T17:34:11,958 Initialized build tracking at /tmp/pip-build-tracker-0ie0oh5f 2026-04-08T17:34:11,959 Created build tracker: /tmp/pip-build-tracker-0ie0oh5f 2026-04-08T17:34:11,959 Entered build tracker: /tmp/pip-build-tracker-0ie0oh5f 2026-04-08T17:34:11,960 Created temporary directory: /tmp/pip-wheel-chfi8zf2 2026-04-08T17:34:11,963 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-08T17:34:11,965 Created temporary directory: /tmp/pip-ephem-wheel-cache-o_26v884 2026-04-08T17:34:11,987 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-08T17:34:11,991 2 location(s) to search for versions of acellera-htmd: 2026-04-08T17:34:11,991 * https://pypi.org/simple/acellera-htmd/ 2026-04-08T17:34:11,991 * https://www.piwheels.org/simple/acellera-htmd/ 2026-04-08T17:34:11,991 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-04-08T17:34:11,992 Getting page https://pypi.org/simple/acellera-htmd/ 2026-04-08T17:34:11,994 Found index url https://pypi.org/simple 2026-04-08T17:34:12,224 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-04-08T17:34:12,227 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-04-08T17:34:12,228 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-04-08T17:34:12,228 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-04-08T17:34:12,229 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-04-08T17:34:12,230 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-04-08T17:34:12,232 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-04-08T17:34:12,233 Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0 2026-04-08T17:34:12,234 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-08T17:34:12,234 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-04-08T17:34:12,235 Found index url https://www.piwheels.org/simple 2026-04-08T17:34:12,412 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-04-08T17:34:12,415 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-08T17:34:12,415 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-08T17:34:12,416 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-04-08T17:34:12,417 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-08T17:34:12,417 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-04-08T17:34:12,438 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-04-08T17:34:12,458 Collecting acellera-htmd==2.6.0 2026-04-08T17:34:12,460 Created temporary directory: /tmp/pip-unpack-ltav7h20 2026-04-08T17:34:12,694 Downloading acellera_htmd-2.6.0.tar.gz (4.0 MB) 2026-04-08T17:34:14,732 Added acellera-htmd==2.6.0 from https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-0ie0oh5f' 2026-04-08T17:34:14,738 Created temporary directory: /tmp/pip-build-env-zbse07f3 2026-04-08T17:34:14,742 Installing build dependencies: started 2026-04-08T17:34:14,743 Running command pip subprocess to install build dependencies 2026-04-08T17:34:15,897 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-08T17:34:16,409 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-08T17:34:16,432 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-08T17:34:18,219 Collecting setuptools 2026-04-08T17:34:18,293 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-08T17:34:18,711 Collecting setuptools-scm>=8 2026-04-08T17:34:18,731 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-08T17:34:18,814 Collecting vcs-versioning>=1.0.0.dev0 2026-04-08T17:34:18,831 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-08T17:34:19,013 Collecting packaging>=20 2026-04-08T17:34:19,029 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-08T17:34:22,096 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-08T17:34:25,815 Creating /tmp/pip-build-env-zbse07f3/overlay/local/bin 2026-04-08T17:34:25,817 changing mode of /tmp/pip-build-env-zbse07f3/overlay/local/bin/vcs-versioning to 755 2026-04-08T17:34:25,939 changing mode of /tmp/pip-build-env-zbse07f3/overlay/local/bin/setuptools-scm to 755 2026-04-08T17:34:25,978 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-08T17:34:26,265 Installing build dependencies: finished with status 'done' 2026-04-08T17:34:26,273 Getting requirements to build wheel: started 2026-04-08T17:34:26,274 Running command Getting requirements to build wheel 2026-04-08T17:34:27,099 running egg_info 2026-04-08T17:34:27,107 writing acellera_htmd.egg-info/PKG-INFO 2026-04-08T17:34:27,112 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-08T17:34:27,114 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-08T17:34:27,118 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-08T17:34:27,120 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-08T17:34:27,203 /tmp/pip-build-env-zbse07f3/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-08T17:34:27,203 return get_active_overrides().subprocess_timeout 2026-04-08T17:34:27,211 listing git files failed - pretending there aren't any 2026-04-08T17:34:27,215 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:27,235 reading manifest template 'MANIFEST.in' 2026-04-08T17:34:27,253 no previously-included directories found matching 'htmd/data' 2026-04-08T17:34:27,254 no previously-included directories found matching '.github' 2026-04-08T17:34:27,256 no previously-included directories found matching 'doc' 2026-04-08T17:34:27,257 no previously-included directories found matching 'package' 2026-04-08T17:34:27,258 no previously-included directories found matching 'tests' 2026-04-08T17:34:27,259 no previously-included directories found matching 'tutorials' 2026-04-08T17:34:27,260 warning: no previously-included files found matching 'Makefile' 2026-04-08T17:34:27,261 adding license file 'LICENSE' 2026-04-08T17:34:27,282 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:27,386 Getting requirements to build wheel: finished with status 'done' 2026-04-08T17:34:27,390 Created temporary directory: /tmp/pip-modern-metadata-b8xy_nba 2026-04-08T17:34:27,393 Preparing metadata (pyproject.toml): started 2026-04-08T17:34:27,394 Running command Preparing metadata (pyproject.toml) 2026-04-08T17:34:28,178 running dist_info 2026-04-08T17:34:28,192 creating /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info 2026-04-08T17:34:28,193 writing /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/PKG-INFO 2026-04-08T17:34:28,198 writing dependency_links to /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/dependency_links.txt 2026-04-08T17:34:28,200 writing entry points to /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/entry_points.txt 2026-04-08T17:34:28,204 writing requirements to /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/requires.txt 2026-04-08T17:34:28,205 writing top-level names to /tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/top_level.txt 2026-04-08T17:34:28,207 writing manifest file '/tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:28,281 /tmp/pip-build-env-zbse07f3/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-08T17:34:28,282 return get_active_overrides().subprocess_timeout 2026-04-08T17:34:28,289 listing git files failed - pretending there aren't any 2026-04-08T17:34:28,294 reading manifest file '/tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:28,296 reading manifest template 'MANIFEST.in' 2026-04-08T17:34:28,314 no previously-included directories found matching 'htmd/data' 2026-04-08T17:34:28,315 no previously-included directories found matching '.github' 2026-04-08T17:34:28,316 no previously-included directories found matching 'doc' 2026-04-08T17:34:28,317 no previously-included directories found matching 'package' 2026-04-08T17:34:28,318 no previously-included directories found matching 'tests' 2026-04-08T17:34:28,319 no previously-included directories found matching 'tutorials' 2026-04-08T17:34:28,320 warning: no previously-included files found matching 'Makefile' 2026-04-08T17:34:28,320 adding license file 'LICENSE' 2026-04-08T17:34:28,337 writing manifest file '/tmp/pip-modern-metadata-b8xy_nba/acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:28,339 creating '/tmp/pip-modern-metadata-b8xy_nba/acellera_htmd-2.6.0.dist-info' 2026-04-08T17:34:28,476 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-08T17:34:28,481 Source in /tmp/pip-wheel-chfi8zf2/acellera-htmd_ddf88748947d46cf853a95f1b1464568 has version 2.6.0, which satisfies requirement acellera-htmd==2.6.0 from https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz 2026-04-08T17:34:28,482 Removed acellera-htmd==2.6.0 from https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-0ie0oh5f' 2026-04-08T17:34:28,487 Created temporary directory: /tmp/pip-unpack-u76weenu 2026-04-08T17:34:28,488 Building wheels for collected packages: acellera-htmd 2026-04-08T17:34:28,493 Created temporary directory: /tmp/pip-wheel-s1vsj2l0 2026-04-08T17:34:28,493 Destination directory: /tmp/pip-wheel-s1vsj2l0 2026-04-08T17:34:28,496 Building wheel for acellera-htmd (pyproject.toml): started 2026-04-08T17:34:28,497 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-04-08T17:34:29,282 running bdist_wheel 2026-04-08T17:34:29,309 running build 2026-04-08T17:34:29,309 running build_py 2026-04-08T17:34:29,312 creating build/lib/htmd 2026-04-08T17:34:29,314 copying htmd/session.py -> build/lib/htmd 2026-04-08T17:34:29,317 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-04-08T17:34:29,320 copying htmd/pathplanning.py -> build/lib/htmd 2026-04-08T17:34:29,323 copying htmd/license.py -> build/lib/htmd 2026-04-08T17:34:29,325 copying htmd/util.py -> build/lib/htmd 2026-04-08T17:34:29,328 copying htmd/simlist.py -> build/lib/htmd 2026-04-08T17:34:29,330 copying htmd/model.py -> build/lib/htmd 2026-04-08T17:34:29,334 copying htmd/units.py -> build/lib/htmd 2026-04-08T17:34:29,336 copying htmd/ui.py -> build/lib/htmd 2026-04-08T17:34:29,339 copying htmd/latest.py -> build/lib/htmd 2026-04-08T17:34:29,341 copying htmd/versionwarnings.py -> build/lib/htmd 2026-04-08T17:34:29,343 copying htmd/home.py -> build/lib/htmd 2026-04-08T17:34:29,345 copying htmd/decorators.py -> build/lib/htmd 2026-04-08T17:34:29,347 copying htmd/config.py -> build/lib/htmd 2026-04-08T17:34:29,350 copying htmd/parallelprogress.py -> build/lib/htmd 2026-04-08T17:34:29,352 copying htmd/dock.py -> build/lib/htmd 2026-04-08T17:34:29,354 copying htmd/metricdata.py -> build/lib/htmd 2026-04-08T17:34:29,358 copying htmd/__init__.py -> build/lib/htmd 2026-04-08T17:34:29,360 copying htmd/kinetics.py -> build/lib/htmd 2026-04-08T17:34:29,363 copying htmd/mutualinformation.py -> build/lib/htmd 2026-04-08T17:34:29,367 creating build/lib/htmd/builder 2026-04-08T17:34:29,368 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-04-08T17:34:29,371 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-04-08T17:34:29,374 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-04-08T17:34:29,377 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-04-08T17:34:29,380 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-04-08T17:34:29,384 copying htmd/builder/noncanonical.py -> build/lib/htmd/builder 2026-04-08T17:34:29,387 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-04-08T17:34:29,389 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-04-08T17:34:29,392 creating build/lib/htmd/membranebuilder 2026-04-08T17:34:29,394 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-04-08T17:34:29,397 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-04-08T17:34:29,400 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-04-08T17:34:29,402 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-04-08T17:34:29,404 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-04-08T17:34:29,408 creating build/lib/htmd/projections 2026-04-08T17:34:29,409 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-04-08T17:34:29,412 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-04-08T17:34:29,414 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-04-08T17:34:29,416 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-04-08T17:34:29,419 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-04-08T17:34:29,422 creating build/lib/htmd/clustering 2026-04-08T17:34:29,423 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-04-08T17:34:29,426 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-04-08T17:34:29,429 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-04-08T17:34:29,432 creating build/lib/htmd/adaptive 2026-04-08T17:34:29,433 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,435 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,438 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,441 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,444 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,447 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,450 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-04-08T17:34:29,485 creating build/lib/htmd/share 2026-04-08T17:34:29,487 copying htmd/share/license-checker -> build/lib/htmd/share 2026-04-08T17:34:29,495 creating build/lib/htmd/share/builder 2026-04-08T17:34:29,496 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-04-08T17:34:29,499 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-04-08T17:34:29,502 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-04-08T17:34:29,510 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,511 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,514 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,517 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,519 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,522 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,525 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,528 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,531 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,534 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,536 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,539 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,541 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,544 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,547 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,550 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,553 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,555 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,558 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,560 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,563 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,565 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,568 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,570 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,573 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,575 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,578 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,581 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,583 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,586 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,588 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,591 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,593 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,596 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,598 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,601 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,604 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,606 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,610 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,612 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,615 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,617 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,620 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,622 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,625 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,627 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,630 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,632 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,635 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,637 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,640 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,645 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,648 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,651 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,653 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,656 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,658 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,660 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,663 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,665 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,668 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,670 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,673 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,675 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,678 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,680 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,683 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,685 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,688 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,691 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,693 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,696 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,698 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,701 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,703 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,706 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,708 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,711 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,714 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,716 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,719 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,721 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,723 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,726 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,729 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,731 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,734 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,736 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,739 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,741 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,744 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,746 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,749 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,751 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,754 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,756 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,759 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,762 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,765 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,767 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,770 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,772 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,775 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,777 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,780 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,782 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,785 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,787 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,790 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,792 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,794 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,797 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,799 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,802 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,804 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,806 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,809 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,811 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,814 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,816 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,818 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,821 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,823 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,825 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,827 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,829 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,831 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,833 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,835 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,837 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,839 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,841 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,843 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:29,845 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,846 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,849 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,851 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,855 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,857 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,859 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,861 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,863 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,865 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,867 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,869 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,871 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,873 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,875 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,878 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,880 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,882 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,884 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,886 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,888 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,890 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,892 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:29,895 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,896 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,898 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,900 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,902 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,904 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,906 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,908 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,911 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,913 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,915 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,917 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,919 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,921 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,923 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,925 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,927 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,929 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,931 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,932 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,934 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,936 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,940 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,942 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,944 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,945 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,948 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,950 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,952 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,954 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,956 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,958 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,960 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,963 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,965 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,967 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,969 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,971 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,973 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,975 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,977 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,980 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,982 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,984 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,986 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,988 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,990 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,992 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,994 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:29,997 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:29,997 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,000 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,002 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,006 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,008 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,010 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:30,012 creating build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,013 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,016 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,018 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,020 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,022 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-04-08T17:34:30,024 creating build/lib/htmd/share/builder/charmmfiles 2026-04-08T17:34:30,025 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-04-08T17:34:30,027 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-04-08T17:34:30,029 creating build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,030 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,035 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,037 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,041 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,047 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,062 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,065 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,070 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,073 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,076 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:30,081 creating build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,082 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,091 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,133 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,146 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,150 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,154 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,156 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,160 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,164 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,167 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:30,175 creating build/lib/htmd/share/builder/charmmfiles/str 2026-04-08T17:34:30,175 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-04-08T17:34:30,178 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,179 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,218 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,222 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,225 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,228 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,233 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,237 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,241 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,244 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,247 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,249 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,253 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:30,259 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,260 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,282 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,287 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,294 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,297 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,317 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:30,324 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,325 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,330 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,375 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,382 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,403 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,437 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,464 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,472 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,489 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,497 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,501 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,504 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,507 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,520 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,524 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,529 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,532 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,540 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,545 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:30,550 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-08T17:34:30,552 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-08T17:34:30,555 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,557 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,560 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,563 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,566 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,569 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:30,572 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,573 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,593 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,597 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,624 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,627 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:30,633 creating build/lib/htmd/share/membranebuilder/lipids 2026-04-08T17:34:30,634 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-04-08T17:34:30,637 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-08T17:34:30,638 copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-08T17:34:30,641 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-08T17:34:30,643 copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-08T17:34:30,646 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-08T17:34:30,647 copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-08T17:34:30,651 creating build/lib/htmd/share/solvate 2026-04-08T17:34:30,652 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-04-08T17:34:30,704 installing to build/bdist.linux-armv7l/wheel 2026-04-08T17:34:30,705 running install 2026-04-08T17:34:30,728 running install_lib 2026-04-08T17:34:30,735 creating build/bdist.linux-armv7l/wheel 2026-04-08T17:34:30,737 creating build/bdist.linux-armv7l/wheel/htmd 2026-04-08T17:34:30,738 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,740 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,743 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,745 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,747 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,750 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-04-08T17:34:30,751 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,753 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,755 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,758 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,760 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,763 copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,766 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,768 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-08T17:34:30,770 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-04-08T17:34:30,771 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-08T17:34:30,774 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-08T17:34:30,776 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-08T17:34:30,778 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-08T17:34:30,780 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-08T17:34:30,782 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,784 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,787 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,790 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-04-08T17:34:30,791 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-08T17:34:30,793 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-08T17:34:30,795 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-08T17:34:30,797 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-08T17:34:30,799 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-08T17:34:30,801 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:30,803 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-04-08T17:34:30,805 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-04-08T17:34:30,807 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-04-08T17:34:30,810 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,811 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,813 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,815 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,817 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,819 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,821 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,823 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,824 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,826 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,828 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,830 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,832 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,834 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,835 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,837 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,839 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,841 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,843 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,844 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,846 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,848 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,850 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,852 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,854 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,856 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,858 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,860 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,862 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,863 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,865 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,867 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,869 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,871 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,873 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,875 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,877 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,878 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,880 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,882 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,884 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,886 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,887 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,889 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,891 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,893 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,895 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,897 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,899 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,900 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,902 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,907 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,909 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,910 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,912 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,914 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,916 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,918 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,920 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,922 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,924 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,926 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,927 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,929 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,931 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,933 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,935 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,937 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,938 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,940 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,942 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,944 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,946 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,947 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,949 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,951 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,953 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,955 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,957 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,958 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,960 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,962 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,964 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,966 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,968 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,970 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,972 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,974 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,976 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,978 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,980 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,982 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,984 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,985 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,987 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,989 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,991 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,993 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,994 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,996 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:30,998 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,000 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,002 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,004 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,005 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,007 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,009 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,011 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,013 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,015 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,017 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,018 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,020 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,022 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,024 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,025 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,027 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,029 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,031 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,033 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,035 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,036 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,038 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,040 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,042 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,044 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,045 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,047 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,049 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,051 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,053 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,055 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,056 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-08T17:34:31,059 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,060 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,062 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,064 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,067 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,069 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,071 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,073 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,075 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,077 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,079 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,081 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,083 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,085 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,087 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,089 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,092 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,094 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,096 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,097 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,099 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,101 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,103 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-08T17:34:31,106 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,107 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,109 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,111 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,113 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,115 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,117 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,119 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,120 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,122 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,124 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,126 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,128 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,130 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,131 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,133 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,135 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,137 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,139 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,141 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,144 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,146 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,150 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,152 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,154 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,157 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,159 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,161 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,164 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,166 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,168 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,171 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,173 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,175 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,177 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,179 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,182 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,184 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,187 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,189 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,191 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,194 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,196 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,198 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,201 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,203 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,205 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,207 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,210 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-08T17:34:31,213 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,214 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,217 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,220 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,225 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,227 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,229 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-08T17:34:31,232 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-04-08T17:34:31,234 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-08T17:34:31,236 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-08T17:34:31,238 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-08T17:34:31,240 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-08T17:34:31,242 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-08T17:34:31,243 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-08T17:34:31,245 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-08T17:34:31,248 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-04-08T17:34:31,250 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-08T17:34:31,252 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-08T17:34:31,254 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,255 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,260 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,262 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,265 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,271 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,295 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,299 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,304 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,306 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,309 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-08T17:34:31,315 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,317 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,325 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,365 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,380 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,384 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,388 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,390 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,393 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,397 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,401 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-08T17:34:31,408 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-04-08T17:34:31,410 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,412 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,442 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,446 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,448 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,451 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,455 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,458 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,462 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,465 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,468 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,470 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,474 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-08T17:34:31,480 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,481 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,506 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,510 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,517 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,520 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,539 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-08T17:34:31,546 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-04-08T17:34:31,550 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,552 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,557 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,596 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,601 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,614 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,638 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,661 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,669 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,688 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,695 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,699 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,702 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,704 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,717 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,721 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,724 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,727 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,734 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,739 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-08T17:34:31,745 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-04-08T17:34:31,746 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-04-08T17:34:31,749 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,750 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,752 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,754 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,756 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,758 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-08T17:34:31,761 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,762 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,786 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,790 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,819 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,821 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-08T17:34:31,827 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-08T17:34:31,834 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-04-08T17:34:31,836 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-04-08T17:34:31,838 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-04-08T17:34:31,840 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-04-08T17:34:31,843 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-04-08T17:34:31,845 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-04-08T17:34:31,848 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-04-08T17:34:31,849 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-04-08T17:34:31,852 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-04-08T17:34:31,855 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-04-08T17:34:31,856 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-04-08T17:34:31,895 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-04-08T17:34:31,903 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-04-08T17:34:31,904 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-08T17:34:31,906 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-08T17:34:31,908 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-08T17:34:31,910 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,912 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,914 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,916 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,918 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,919 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,921 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,923 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,926 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,928 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,932 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-04-08T17:34:31,933 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,935 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,937 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,940 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,942 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,945 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,947 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-08T17:34:31,949 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-08T17:34:31,951 running install_egg_info 2026-04-08T17:34:31,964 running egg_info 2026-04-08T17:34:31,971 writing acellera_htmd.egg-info/PKG-INFO 2026-04-08T17:34:31,975 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-08T17:34:31,977 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-08T17:34:31,981 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-08T17:34:31,982 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-08T17:34:32,049 /tmp/pip-build-env-zbse07f3/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-08T17:34:32,049 return get_active_overrides().subprocess_timeout 2026-04-08T17:34:32,056 listing git files failed - pretending there aren't any 2026-04-08T17:34:32,060 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:32,080 reading manifest template 'MANIFEST.in' 2026-04-08T17:34:32,098 no previously-included directories found matching 'htmd/data' 2026-04-08T17:34:32,099 no previously-included directories found matching '.github' 2026-04-08T17:34:32,100 no previously-included directories found matching 'doc' 2026-04-08T17:34:32,101 no previously-included directories found matching 'package' 2026-04-08T17:34:32,103 no previously-included directories found matching 'tests' 2026-04-08T17:34:32,104 no previously-included directories found matching 'tutorials' 2026-04-08T17:34:32,105 warning: no previously-included files found matching 'Makefile' 2026-04-08T17:34:32,106 adding license file 'LICENSE' 2026-04-08T17:34:32,127 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-08T17:34:32,129 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.0-py3.11.egg-info 2026-04-08T17:34:32,140 running install_scripts 2026-04-08T17:34:32,151 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.0.dist-info/WHEEL 2026-04-08T17:34:32,154 creating '/tmp/pip-wheel-s1vsj2l0/.tmp-pu_c4e0n/acellera_htmd-2.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-08T17:34:32,157 adding 'acellera_htmd-2.6.0.dist-info/licenses/LICENSE' 2026-04-08T17:34:32,159 adding 'htmd/__init__.py' 2026-04-08T17:34:32,161 adding 'htmd/config.py' 2026-04-08T17:34:32,162 adding 'htmd/decorators.py' 2026-04-08T17:34:32,164 adding 'htmd/dock.py' 2026-04-08T17:34:32,165 adding 'htmd/home.py' 2026-04-08T17:34:32,168 adding 'htmd/kinetics.py' 2026-04-08T17:34:32,169 adding 'htmd/latest.py' 2026-04-08T17:34:32,171 adding 'htmd/license.py' 2026-04-08T17:34:32,178 adding 'htmd/metricdata.py' 2026-04-08T17:34:32,180 adding 'htmd/metricdatagenerator.py' 2026-04-08T17:34:32,188 adding 'htmd/model.py' 2026-04-08T17:34:32,191 adding 'htmd/mutualinformation.py' 2026-04-08T17:34:32,192 adding 'htmd/parallelprogress.py' 2026-04-08T17:34:32,194 adding 'htmd/pathplanning.py' 2026-04-08T17:34:32,196 adding 'htmd/session.py' 2026-04-08T17:34:32,199 adding 'htmd/simlist.py' 2026-04-08T17:34:32,200 adding 'htmd/ui.py' 2026-04-08T17:34:32,201 adding 'htmd/units.py' 2026-04-08T17:34:32,203 adding 'htmd/util.py' 2026-04-08T17:34:32,204 adding 'htmd/versionwarnings.py' 2026-04-08T17:34:32,206 adding 'htmd/adaptive/__init__.py' 2026-04-08T17:34:32,209 adding 'htmd/adaptive/adaptive.py' 2026-04-08T17:34:32,212 adding 'htmd/adaptive/adaptivebandit.py' 2026-04-08T17:34:32,215 adding 'htmd/adaptive/adaptivegoal.py' 2026-04-08T17:34:32,217 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-04-08T17:34:32,220 adding 'htmd/adaptive/adaptiverun.py' 2026-04-08T17:34:32,221 adding 'htmd/adaptive/util.py' 2026-04-08T17:34:32,223 adding 'htmd/builder/__init__.py' 2026-04-08T17:34:32,231 adding 'htmd/builder/amber.py' 2026-04-08T17:34:32,234 adding 'htmd/builder/builder.py' 2026-04-08T17:34:32,239 adding 'htmd/builder/charmm.py' 2026-04-08T17:34:32,241 adding 'htmd/builder/ionize.py' 2026-04-08T17:34:32,243 adding 'htmd/builder/loopmodeler.py' 2026-04-08T17:34:32,246 adding 'htmd/builder/noncanonical.py' 2026-04-08T17:34:32,248 adding 'htmd/builder/solvate.py' 2026-04-08T17:34:32,250 adding 'htmd/clustering/__init__.py' 2026-04-08T17:34:32,251 adding 'htmd/clustering/kcenters.py' 2026-04-08T17:34:32,254 adding 'htmd/clustering/regular.py' 2026-04-08T17:34:32,255 adding 'htmd/membranebuilder/__init__.py' 2026-04-08T17:34:32,257 adding 'htmd/membranebuilder/build_membrane.py' 2026-04-08T17:34:32,259 adding 'htmd/membranebuilder/globalminimization.py' 2026-04-08T17:34:32,260 adding 'htmd/membranebuilder/ljfluid.py' 2026-04-08T17:34:32,262 adding 'htmd/membranebuilder/ringpenetration.py' 2026-04-08T17:34:32,263 adding 'htmd/projections/__init__.py' 2026-04-08T17:34:32,265 adding 'htmd/projections/gwpca.py' 2026-04-08T17:34:32,266 adding 'htmd/projections/kmeanstri.py' 2026-04-08T17:34:32,268 adding 'htmd/projections/metric.py' 2026-04-08T17:34:32,270 adding 'htmd/projections/tica.py' 2026-04-08T17:34:32,328 adding 'htmd/share/license-checker' 2026-04-08T17:34:32,360 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-04-08T17:34:32,363 adding 'htmd/share/builder/triala_capped.cif' 2026-04-08T17:34:32,365 adding 'htmd/share/builder/triala_capped.mmtf' 2026-04-08T17:34:32,367 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-04-08T17:34:32,368 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-04-08T17:34:32,370 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-04-08T17:34:32,372 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-04-08T17:34:32,373 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-04-08T17:34:32,375 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-04-08T17:34:32,376 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-04-08T17:34:32,378 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-04-08T17:34:32,379 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-04-08T17:34:32,381 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-04-08T17:34:32,382 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-04-08T17:34:32,384 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-04-08T17:34:32,385 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-04-08T17:34:32,387 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-04-08T17:34:32,388 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-04-08T17:34:32,390 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-04-08T17:34:32,392 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-04-08T17:34:32,394 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-04-08T17:34:32,395 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-04-08T17:34:32,397 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-04-08T17:34:32,398 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-04-08T17:34:32,407 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-04-08T17:34:32,416 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-04-08T17:34:32,417 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-04-08T17:34:32,419 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-04-08T17:34:32,421 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-04-08T17:34:32,422 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-04-08T17:34:32,423 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-04-08T17:34:32,425 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-04-08T17:34:32,426 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-04-08T17:34:32,427 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-04-08T17:34:32,429 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-04-08T17:34:32,430 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-04-08T17:34:32,432 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-04-08T17:34:32,433 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-04-08T17:34:32,435 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-04-08T17:34:32,436 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-04-08T17:34:32,438 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-04-08T17:34:32,440 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-04-08T17:34:32,442 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-04-08T17:34:32,443 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-04-08T17:34:32,444 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-04-08T17:34:32,445 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-04-08T17:34:32,447 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-04-08T17:34:32,448 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-04-08T17:34:32,449 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-04-08T17:34:32,450 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-04-08T17:34:32,452 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-04-08T17:34:32,453 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-04-08T17:34:32,454 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-04-08T17:34:32,455 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-04-08T17:34:32,457 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-04-08T17:34:32,458 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-04-08T17:34:32,460 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-04-08T17:34:32,462 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-04-08T17:34:32,463 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-04-08T17:34:32,464 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-04-08T17:34:32,466 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-04-08T17:34:32,467 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-04-08T17:34:32,469 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-04-08T17:34:32,470 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-04-08T17:34:32,471 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-04-08T17:34:32,473 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-04-08T17:34:32,475 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-04-08T17:34:32,477 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-04-08T17:34:32,478 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-04-08T17:34:32,479 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-04-08T17:34:32,481 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-04-08T17:34:32,483 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-04-08T17:34:32,485 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-04-08T17:34:32,486 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-04-08T17:34:32,488 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-04-08T17:34:32,490 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-04-08T17:34:32,491 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-04-08T17:34:32,493 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-04-08T17:34:32,494 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-04-08T17:34:32,496 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-04-08T17:34:32,498 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-04-08T17:34:32,500 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-04-08T17:34:32,502 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-04-08T17:34:32,504 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-04-08T17:34:32,505 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-04-08T17:34:32,507 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-04-08T17:34:32,509 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-04-08T17:34:32,511 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-04-08T17:34:32,512 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-04-08T17:34:32,514 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-04-08T17:34:32,516 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-04-08T17:34:32,517 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-04-08T17:34:32,519 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-04-08T17:34:32,520 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-04-08T17:34:32,522 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-04-08T17:34:32,524 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-04-08T17:34:32,526 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-04-08T17:34:32,527 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-04-08T17:34:32,529 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-04-08T17:34:32,530 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-04-08T17:34:32,532 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-04-08T17:34:32,533 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-04-08T17:34:32,534 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-04-08T17:34:32,535 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-04-08T17:34:32,537 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-04-08T17:34:32,538 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-04-08T17:34:32,539 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-04-08T17:34:32,540 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-04-08T17:34:32,542 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-04-08T17:34:32,543 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-04-08T17:34:32,544 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-04-08T17:34:32,545 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-04-08T17:34:32,547 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-04-08T17:34:32,548 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-04-08T17:34:32,549 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-04-08T17:34:32,550 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-04-08T17:34:32,552 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-04-08T17:34:32,553 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-04-08T17:34:32,554 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-04-08T17:34:32,555 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-04-08T17:34:32,557 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-04-08T17:34:32,558 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-04-08T17:34:32,559 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-04-08T17:34:32,560 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-04-08T17:34:32,562 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-04-08T17:34:32,563 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-04-08T17:34:32,564 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-04-08T17:34:32,565 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-04-08T17:34:32,567 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-04-08T17:34:32,568 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-04-08T17:34:32,569 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-04-08T17:34:32,570 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-04-08T17:34:32,572 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-04-08T17:34:32,573 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-04-08T17:34:32,574 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-04-08T17:34:32,575 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-04-08T17:34:32,577 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-04-08T17:34:32,578 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-04-08T17:34:32,579 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-04-08T17:34:32,580 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-04-08T17:34:32,581 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-04-08T17:34:32,582 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-04-08T17:34:32,584 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-04-08T17:34:32,585 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-04-08T17:34:32,586 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-04-08T17:34:32,587 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-04-08T17:34:32,588 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-04-08T17:34:32,590 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-04-08T17:34:32,591 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-04-08T17:34:32,592 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-04-08T17:34:32,593 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-04-08T17:34:32,595 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-04-08T17:34:32,596 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-04-08T17:34:32,597 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-04-08T17:34:32,598 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-04-08T17:34:32,600 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-04-08T17:34:32,621 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-04-08T17:34:32,623 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-04-08T17:34:32,625 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-04-08T17:34:32,630 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-04-08T17:34:32,631 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-04-08T17:34:32,633 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-04-08T17:34:32,634 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-04-08T17:34:32,637 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-04-08T17:34:32,638 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-04-08T17:34:32,639 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-04-08T17:34:32,641 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-04-08T17:34:32,642 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-04-08T17:34:32,643 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-04-08T17:34:32,645 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-04-08T17:34:32,646 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-04-08T17:34:32,647 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-04-08T17:34:32,649 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-04-08T17:34:32,650 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-04-08T17:34:32,651 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-04-08T17:34:32,652 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-04-08T17:34:32,654 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-04-08T17:34:32,655 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-04-08T17:34:32,656 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-04-08T17:34:32,658 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-04-08T17:34:32,659 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-04-08T17:34:32,660 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-04-08T17:34:32,662 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-04-08T17:34:32,663 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-04-08T17:34:32,664 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-04-08T17:34:32,666 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-04-08T17:34:32,667 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-04-08T17:34:32,668 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-04-08T17:34:32,669 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-04-08T17:34:32,670 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-04-08T17:34:32,672 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-04-08T17:34:32,673 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-04-08T17:34:32,674 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-04-08T17:34:32,675 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-04-08T17:34:32,676 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-04-08T17:34:32,677 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-04-08T17:34:32,679 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-04-08T17:34:32,680 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-04-08T17:34:32,682 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-04-08T17:34:32,683 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-04-08T17:34:32,684 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-04-08T17:34:32,685 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-04-08T17:34:32,690 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-04-08T17:34:32,691 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-04-08T17:34:32,692 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-04-08T17:34:32,693 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-04-08T17:34:32,694 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-04-08T17:34:32,696 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-04-08T17:34:32,697 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-04-08T17:34:32,698 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-04-08T17:34:32,707 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-04-08T17:34:32,709 adding 'htmd/share/builder/caps/ACE.cif' 2026-04-08T17:34:32,710 adding 'htmd/share/builder/caps/ACE.pdb' 2026-04-08T17:34:32,711 adding 'htmd/share/builder/caps/NHE.pdb' 2026-04-08T17:34:32,713 adding 'htmd/share/builder/caps/NME.cif' 2026-04-08T17:34:32,714 adding 'htmd/share/builder/caps/NME.pdb' 2026-04-08T17:34:32,715 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-04-08T17:34:32,717 adding 'htmd/share/builder/charmmfiles/README.md' 2026-04-08T17:34:32,730 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-04-08T17:34:32,744 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-04-08T17:34:32,747 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-04-08T17:34:32,763 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-04-08T17:34:32,849 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-04-08T17:34:32,858 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-04-08T17:34:32,861 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-04-08T17:34:32,869 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-04-08T17:34:32,884 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-04-08T17:34:32,887 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-04-08T17:34:32,889 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-04-08T17:34:32,966 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-04-08T17:34:32,975 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-04-08T17:34:33,105 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-04-08T17:34:33,132 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-04-08T17:34:33,144 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-04-08T17:34:33,148 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-04-08T17:34:33,186 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-04-08T17:34:33,218 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-04-08T17:34:33,324 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-04-08T17:34:33,330 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-04-08T17:34:33,343 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-04-08T17:34:33,350 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-04-08T17:34:33,443 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-04-08T17:34:33,467 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-04-08T17:34:33,487 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-04-08T17:34:33,579 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-04-08T17:34:33,590 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-04-08T17:34:33,850 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-04-08T17:34:33,966 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-04-08T17:34:34,028 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-04-08T17:34:34,044 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-04-08T17:34:34,053 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-04-08T17:34:34,069 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-04-08T17:34:34,080 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-04-08T17:34:34,087 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-04-08T17:34:34,090 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-04-08T17:34:34,092 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-04-08T17:34:34,093 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-04-08T17:34:34,095 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-04-08T17:34:34,097 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-04-08T17:34:34,110 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-04-08T17:34:34,136 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-04-08T17:34:34,157 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-04-08T17:34:34,162 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-04-08T17:34:34,291 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-04-08T17:34:34,427 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-04-08T17:34:34,437 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-04-08T17:34:34,439 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-04-08T17:34:34,451 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-04-08T17:34:34,476 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-04-08T17:34:34,479 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-04-08T17:34:34,482 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-04-08T17:34:34,485 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-04-08T17:34:34,496 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-04-08T17:34:34,694 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-04-08T17:34:34,715 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-04-08T17:34:34,720 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-04-08T17:34:34,728 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-04-08T17:34:34,738 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-04-08T17:34:34,747 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-04-08T17:34:34,754 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-04-08T17:34:34,779 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-04-08T17:34:35,083 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-04-08T17:34:35,161 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-04-08T17:34:35,211 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-04-08T17:34:35,217 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-04-08T17:34:35,227 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-04-08T17:34:35,228 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-04-08T17:34:35,230 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-04-08T17:34:35,232 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb' 2026-04-08T17:34:35,235 adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb' 2026-04-08T17:34:35,237 adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb' 2026-04-08T17:34:35,527 adding 'htmd/share/solvate/wat.pdb' 2026-04-08T17:34:35,541 adding 'acellera_htmd-2.6.0.dist-info/METADATA' 2026-04-08T17:34:35,542 adding 'acellera_htmd-2.6.0.dist-info/WHEEL' 2026-04-08T17:34:35,543 adding 'acellera_htmd-2.6.0.dist-info/entry_points.txt' 2026-04-08T17:34:35,544 adding 'acellera_htmd-2.6.0.dist-info/top_level.txt' 2026-04-08T17:34:35,549 adding 'acellera_htmd-2.6.0.dist-info/RECORD' 2026-04-08T17:34:35,601 removing build/bdist.linux-armv7l/wheel 2026-04-08T17:34:35,797 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-04-08T17:34:35,906 Created wheel for acellera-htmd: filename=acellera_htmd-2.6.0-py3-none-any.whl size=4269343 sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 2026-04-08T17:34:35,908 Stored in directory: /tmp/pip-ephem-wheel-cache-o_26v884/wheels/9d/da/92/3b8f6404ed8f1fd7d852f66c7b7a1ade29782e7154e49558fd 2026-04-08T17:34:35,931 Successfully built acellera-htmd 2026-04-08T17:34:36,042 Removed build tracker: '/tmp/pip-build-tracker-0ie0oh5f'