2026-04-09T09:06:41,959 Created temporary directory: /tmp/pip-ephem-wheel-cache-g1t1yzdi 2026-04-09T09:06:41,961 Created temporary directory: /tmp/pip-build-tracker-n5_n_zes 2026-04-09T09:06:41,961 Initialized build tracking at /tmp/pip-build-tracker-n5_n_zes 2026-04-09T09:06:41,962 Created build tracker: /tmp/pip-build-tracker-n5_n_zes 2026-04-09T09:06:41,962 Entered build tracker: /tmp/pip-build-tracker-n5_n_zes 2026-04-09T09:06:41,963 Created temporary directory: /tmp/pip-wheel-v332hafj 2026-04-09T09:06:41,966 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T09:06:41,968 Created temporary directory: /tmp/pip-ephem-wheel-cache-mtvvgj8t 2026-04-09T09:06:41,989 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T09:06:41,993 2 location(s) to search for versions of pystack3d: 2026-04-09T09:06:41,993 * https://pypi.org/simple/pystack3d/ 2026-04-09T09:06:41,993 * https://www.piwheels.org/simple/pystack3d/ 2026-04-09T09:06:41,993 Fetching project page and analyzing links: https://pypi.org/simple/pystack3d/ 2026-04-09T09:06:41,994 Getting page https://pypi.org/simple/pystack3d/ 2026-04-09T09:06:41,996 Found index url https://pypi.org/simple 2026-04-09T09:06:42,220 Fetched page https://pypi.org/simple/pystack3d/ as application/vnd.pypi.simple.v1+json 2026-04-09T09:06:42,224 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/27/7b/8105fa7b97a69cf82e7edd4f017040ab8c42c1503989cc6a5a8b222860fd/pystack3d-2024.1-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.10) 2026-04-09T09:06:42,225 Found link https://files.pythonhosted.org/packages/0b/1a/924b00fcb539dc2440cfd24558392f2b6752a112bf911cdde9c5e99fb333/pystack3d-2024.1.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.10), version: 2024.1 2026-04-09T09:06:42,226 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/05/b9/80be3ab696ccff2533913ff68951d68d7590800e7ea57b1b6bfb175500a7/pystack3d-2024.2-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:<3.12,>=3.8) 2026-04-09T09:06:42,227 Found link https://files.pythonhosted.org/packages/0e/e7/5129cee9828426a2032c8382261ca3be34af7b753142865a9fc4d4a27ac1/pystack3d-2024.2.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:<3.12,>=3.8), version: 2024.2 2026-04-09T09:06:42,227 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/c1/b2/7fad01565c47dc2602523b9d7809701d8246bb6aa462be7a6d27485530e1/pystack3d-2025.1-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:<3.12,>=3.8) 2026-04-09T09:06:42,228 Found link https://files.pythonhosted.org/packages/bf/d1/2fadf1b3ce4240fa8666de967d06a938575c82cdde5dedb435855ea50ae6/pystack3d-2025.1.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:<3.12,>=3.8), version: 2025.1 2026-04-09T09:06:42,229 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/01/4b/86263628fc48ad633d9be9e0c6edf35c81141c1fc6e274566ec83d6fa6cd/pystack3d-2025.2-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,230 Found link https://files.pythonhosted.org/packages/91/55/f5d64b185a2275973e4facfb421881081d78a9d62cdb3c1299b45b0b3aa2/pystack3d-2025.2.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8), version: 2025.2 2026-04-09T09:06:42,231 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/b5/c9/dd3774d86b62904ada460e7bc7502a7937a8c717ed8478fb80b1153bdafe/pystack3d-2025.3-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,231 Found link https://files.pythonhosted.org/packages/c2/0d/5947356ef03e384c91f8d92ffa17a8d9ebe28a184b3cb65a3ce09006aebc/pystack3d-2025.3.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8), version: 2025.3 2026-04-09T09:06:42,232 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/6a/42/776e41015a623843a59971d39109c7d07822ff38c344137f7b305437eb38/pystack3d-2026.1-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,233 Found link https://files.pythonhosted.org/packages/5b/e8/aa65f080931b7c38f63429a2761c7fc429372e81892496170694111056c4/pystack3d-2026.1.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8), version: 2026.1 2026-04-09T09:06:42,234 Skipping link: No binaries permitted for pystack3d: https://files.pythonhosted.org/packages/b4/97/936e2d07391c44028affc9e5dc36b227942930ffff0185f6fd017d97895b/pystack3d-2026.2-py3-none-any.whl (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,234 Found link https://files.pythonhosted.org/packages/bf/28/394e792fba72bcef6c3a706caa217f2f58966dd0a7333274c9dfbd693d69/pystack3d-2026.2.tar.gz (from https://pypi.org/simple/pystack3d/) (requires-python:>=3.8), version: 2026.2 2026-04-09T09:06:42,235 Fetching project page and analyzing links: https://www.piwheels.org/simple/pystack3d/ 2026-04-09T09:06:42,236 Getting page https://www.piwheels.org/simple/pystack3d/ 2026-04-09T09:06:42,237 Found index url https://www.piwheels.org/simple 2026-04-09T09:06:42,428 Fetched page https://www.piwheels.org/simple/pystack3d/ as text/html 2026-04-09T09:06:42,431 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2026.1-py3-none-any.whl#sha256=960df4538cfa5128340de73ad614b2a9bd33b516dafa322ff5715159c81fea0f (from https://www.piwheels.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,431 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2025.3-py3-none-any.whl#sha256=b2ad70b98fbfaecdebf6696a8e36497430a49083c5d4435c9592aef0dd353abb (from https://www.piwheels.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,432 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2025.2-py3-none-any.whl#sha256=3094858591d09bfc4f5657f7b22597539bddc1935455433e697736f83b805405 (from https://www.piwheels.org/simple/pystack3d/) (requires-python:>=3.8) 2026-04-09T09:06:42,433 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2025.1-py3-none-any.whl#sha256=5e7572f006a779870fb191ff5f3fa1d72d2e37bd1851ed38b2b52809b7f22333 (from https://www.piwheels.org/simple/pystack3d/) (requires-python:<3.12,>=3.8) 2026-04-09T09:06:42,433 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2024.2-py3-none-any.whl#sha256=d2a7a626ae682c5786f1cb18cca7c14358353a95ebc10fae59952b8d27c697a5 (from https://www.piwheels.org/simple/pystack3d/) (requires-python:<3.12,>=3.8) 2026-04-09T09:06:42,434 Skipping link: No binaries permitted for pystack3d: https://archive1.piwheels.org/simple/pystack3d/pystack3d-2024.1-py3-none-any.whl#sha256=a9749bf7287d387173f74a5e4ecd5b7344412d9a06eabedd1ef263b36bda2c47 (from https://www.piwheels.org/simple/pystack3d/) (requires-python:>=3.10) 2026-04-09T09:06:42,434 Skipping link: not a file: https://www.piwheels.org/simple/pystack3d/ 2026-04-09T09:06:42,435 Skipping link: not a file: https://pypi.org/simple/pystack3d/ 2026-04-09T09:06:42,454 Given no hashes to check 1 links for project 'pystack3d': discarding no candidates 2026-04-09T09:06:42,472 Collecting pystack3d==2026.2 2026-04-09T09:06:42,474 Created temporary directory: /tmp/pip-unpack-e6jneyy4 2026-04-09T09:06:42,700 Downloading pystack3d-2026.2.tar.gz (47 kB) 2026-04-09T09:06:42,807 Added pystack3d==2026.2 from https://files.pythonhosted.org/packages/bf/28/394e792fba72bcef6c3a706caa217f2f58966dd0a7333274c9dfbd693d69/pystack3d-2026.2.tar.gz to build tracker '/tmp/pip-build-tracker-n5_n_zes' 2026-04-09T09:06:42,812 Created temporary directory: /tmp/pip-build-env-vng9na96 2026-04-09T09:06:42,817 Installing build dependencies: started 2026-04-09T09:06:42,818 Running command pip subprocess to install build dependencies 2026-04-09T09:06:43,991 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-09T09:06:44,442 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T09:06:44,465 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T09:06:46,278 Collecting setuptools>=42 2026-04-09T09:06:46,354 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-09T09:06:49,370 Installing collected packages: setuptools 2026-04-09T09:06:52,801 Successfully installed setuptools-82.0.1 2026-04-09T09:06:53,070 Installing build dependencies: finished with status 'done' 2026-04-09T09:06:53,076 Getting requirements to build wheel: started 2026-04-09T09:06:53,077 Running command Getting requirements to build wheel 2026-04-09T09:06:53,682 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-09T09:06:53,682 !! 2026-04-09T09:06:53,683 ******************************************************************************** 2026-04-09T09:06:53,684 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-09T09:06:53,685 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-09T09:06:53,685 or your builds will no longer be supported. 2026-04-09T09:06:53,686 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:53,687 ******************************************************************************** 2026-04-09T09:06:53,688 !! 2026-04-09T09:06:53,689 corresp(dist, value, root_dir) 2026-04-09T09:06:53,766 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:53,767 !! 2026-04-09T09:06:53,768 ******************************************************************************** 2026-04-09T09:06:53,768 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:53,769 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:53,770 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:53,771 ******************************************************************************** 2026-04-09T09:06:53,772 !! 2026-04-09T09:06:53,773 dist._finalize_license_expression() 2026-04-09T09:06:53,773 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:53,774 !! 2026-04-09T09:06:53,775 ******************************************************************************** 2026-04-09T09:06:53,776 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:53,777 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:53,778 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:53,779 ******************************************************************************** 2026-04-09T09:06:53,779 !! 2026-04-09T09:06:53,780 self._finalize_license_expression() 2026-04-09T09:06:53,780 running egg_info 2026-04-09T09:06:53,784 writing pystack3d.egg-info/PKG-INFO 2026-04-09T09:06:53,787 writing dependency_links to pystack3d.egg-info/dependency_links.txt 2026-04-09T09:06:53,790 writing requirements to pystack3d.egg-info/requires.txt 2026-04-09T09:06:53,791 writing top-level names to pystack3d.egg-info/top_level.txt 2026-04-09T09:06:53,812 reading manifest file 'pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:53,815 adding license file 'LICENSE' 2026-04-09T09:06:53,818 writing manifest file 'pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:53,915 Getting requirements to build wheel: finished with status 'done' 2026-04-09T09:06:53,919 Created temporary directory: /tmp/pip-modern-metadata-0rrodh5c 2026-04-09T09:06:53,921 Preparing metadata (pyproject.toml): started 2026-04-09T09:06:53,922 Running command Preparing metadata (pyproject.toml) 2026-04-09T09:06:54,492 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-09T09:06:54,492 !! 2026-04-09T09:06:54,494 ******************************************************************************** 2026-04-09T09:06:54,494 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-09T09:06:54,495 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-09T09:06:54,496 or your builds will no longer be supported. 2026-04-09T09:06:54,497 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:54,497 ******************************************************************************** 2026-04-09T09:06:54,498 !! 2026-04-09T09:06:54,499 corresp(dist, value, root_dir) 2026-04-09T09:06:54,569 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:54,569 !! 2026-04-09T09:06:54,570 ******************************************************************************** 2026-04-09T09:06:54,571 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:54,572 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:54,573 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:54,574 ******************************************************************************** 2026-04-09T09:06:54,575 !! 2026-04-09T09:06:54,575 dist._finalize_license_expression() 2026-04-09T09:06:54,576 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:54,577 !! 2026-04-09T09:06:54,578 ******************************************************************************** 2026-04-09T09:06:54,579 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:54,580 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:54,581 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:54,581 ******************************************************************************** 2026-04-09T09:06:54,583 !! 2026-04-09T09:06:54,583 self._finalize_license_expression() 2026-04-09T09:06:54,584 running dist_info 2026-04-09T09:06:54,593 creating /tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info 2026-04-09T09:06:54,594 writing /tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/PKG-INFO 2026-04-09T09:06:54,598 writing dependency_links to /tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/dependency_links.txt 2026-04-09T09:06:54,600 writing requirements to /tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/requires.txt 2026-04-09T09:06:54,601 writing top-level names to /tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/top_level.txt 2026-04-09T09:06:54,603 writing manifest file '/tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:54,621 reading manifest file '/tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:54,623 adding license file 'LICENSE' 2026-04-09T09:06:54,626 writing manifest file '/tmp/pip-modern-metadata-0rrodh5c/pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:54,627 creating '/tmp/pip-modern-metadata-0rrodh5c/pystack3d-2026.2.dist-info' 2026-04-09T09:06:54,752 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-09T09:06:54,757 Source in /tmp/pip-wheel-v332hafj/pystack3d_f825c88915d64bbaaf0cee8231f668ba has version 2026.2, which satisfies requirement pystack3d==2026.2 from https://files.pythonhosted.org/packages/bf/28/394e792fba72bcef6c3a706caa217f2f58966dd0a7333274c9dfbd693d69/pystack3d-2026.2.tar.gz 2026-04-09T09:06:54,758 Removed pystack3d==2026.2 from https://files.pythonhosted.org/packages/bf/28/394e792fba72bcef6c3a706caa217f2f58966dd0a7333274c9dfbd693d69/pystack3d-2026.2.tar.gz from build tracker '/tmp/pip-build-tracker-n5_n_zes' 2026-04-09T09:06:54,763 Created temporary directory: /tmp/pip-unpack-uocgp759 2026-04-09T09:06:54,764 Building wheels for collected packages: pystack3d 2026-04-09T09:06:54,768 Created temporary directory: /tmp/pip-wheel-ad1czycx 2026-04-09T09:06:54,769 Destination directory: /tmp/pip-wheel-ad1czycx 2026-04-09T09:06:54,771 Building wheel for pystack3d (pyproject.toml): started 2026-04-09T09:06:54,772 Running command Building wheel for pystack3d (pyproject.toml) 2026-04-09T09:06:55,332 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-09T09:06:55,332 !! 2026-04-09T09:06:55,333 ******************************************************************************** 2026-04-09T09:06:55,334 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-09T09:06:55,335 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-09T09:06:55,336 or your builds will no longer be supported. 2026-04-09T09:06:55,337 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:55,337 ******************************************************************************** 2026-04-09T09:06:55,338 !! 2026-04-09T09:06:55,339 corresp(dist, value, root_dir) 2026-04-09T09:06:55,402 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:55,403 !! 2026-04-09T09:06:55,404 ******************************************************************************** 2026-04-09T09:06:55,404 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:55,405 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:55,407 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:55,407 ******************************************************************************** 2026-04-09T09:06:55,409 !! 2026-04-09T09:06:55,409 dist._finalize_license_expression() 2026-04-09T09:06:55,410 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-09T09:06:55,410 !! 2026-04-09T09:06:55,411 ******************************************************************************** 2026-04-09T09:06:55,412 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-09T09:06:55,413 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-09T09:06:55,413 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-09T09:06:55,414 ******************************************************************************** 2026-04-09T09:06:55,415 !! 2026-04-09T09:06:55,415 self._finalize_license_expression() 2026-04-09T09:06:55,416 running bdist_wheel 2026-04-09T09:06:55,430 running build 2026-04-09T09:06:55,430 running build_py 2026-04-09T09:06:55,437 creating build/lib/pystack3d 2026-04-09T09:06:55,439 copying pystack3d/intensity_rescaling.py -> build/lib/pystack3d 2026-04-09T09:06:55,442 copying pystack3d/registration_calculation.py -> build/lib/pystack3d 2026-04-09T09:06:55,444 copying pystack3d/__init__.py -> build/lib/pystack3d 2026-04-09T09:06:55,446 copying pystack3d/registration_transformation.py -> build/lib/pystack3d 2026-04-09T09:06:55,448 copying pystack3d/bkg_removal.py -> build/lib/pystack3d 2026-04-09T09:06:55,451 copying pystack3d/stack3d.py -> build/lib/pystack3d 2026-04-09T09:06:55,454 copying pystack3d/cropping.py -> build/lib/pystack3d 2026-04-09T09:06:55,456 copying pystack3d/destriping.py -> build/lib/pystack3d 2026-04-09T09:06:55,458 copying pystack3d/intensity_rescaling_area.py -> build/lib/pystack3d 2026-04-09T09:06:55,461 copying pystack3d/resampling.py -> build/lib/pystack3d 2026-04-09T09:06:55,463 copying pystack3d/utils.py -> build/lib/pystack3d 2026-04-09T09:06:55,465 copying pystack3d/utils_multiprocessing.py -> build/lib/pystack3d 2026-04-09T09:06:55,467 copying pystack3d/utils_metadata_fibics.py -> build/lib/pystack3d 2026-04-09T09:06:55,469 running egg_info 2026-04-09T09:06:55,479 writing pystack3d.egg-info/PKG-INFO 2026-04-09T09:06:55,483 writing dependency_links to pystack3d.egg-info/dependency_links.txt 2026-04-09T09:06:55,485 writing requirements to pystack3d.egg-info/requires.txt 2026-04-09T09:06:55,486 writing top-level names to pystack3d.egg-info/top_level.txt 2026-04-09T09:06:55,496 reading manifest file 'pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:55,499 adding license file 'LICENSE' 2026-04-09T09:06:55,502 writing manifest file 'pystack3d.egg-info/SOURCES.txt' 2026-04-09T09:06:55,504 /tmp/pip-build-env-vng9na96/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pystack3d.assets' is absent from the `packages` configuration. 2026-04-09T09:06:55,505 !! 2026-04-09T09:06:55,506 ******************************************************************************** 2026-04-09T09:06:55,506 ############################ 2026-04-09T09:06:55,507 # Package would be ignored # 2026-04-09T09:06:55,507 ############################ 2026-04-09T09:06:55,508 Python recognizes 'pystack3d.assets' as an importable package[^1], 2026-04-09T09:06:55,508 but it is absent from setuptools' `packages` configuration. 2026-04-09T09:06:55,509 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T09:06:55,510 package, please make sure that 'pystack3d.assets' is explicitly added 2026-04-09T09:06:55,510 to the `packages` configuration field. 2026-04-09T09:06:55,511 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T09:06:55,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T09:06:55,513 instead of `find_packages(...)`/`find:`). 2026-04-09T09:06:55,513 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T09:06:55,514 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T09:06:55,515 If you don't want 'pystack3d.assets' to be distributed and are 2026-04-09T09:06:55,516 already explicitly excluding 'pystack3d.assets' via 2026-04-09T09:06:55,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T09:06:55,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T09:06:55,517 combination with a more fine grained `package-data` configuration. 2026-04-09T09:06:55,518 You can read more about "package data files" on setuptools documentation page: 2026-04-09T09:06:55,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T09:06:55,520 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T09:06:55,521 even if it does not contain any `.py` files. 2026-04-09T09:06:55,521 On the other hand, currently there is no concept of package data 2026-04-09T09:06:55,522 directory, all directories are treated like packages. 2026-04-09T09:06:55,522 ******************************************************************************** 2026-04-09T09:06:55,523 !! 2026-04-09T09:06:55,524 check.warn(importable) 2026-04-09T09:06:55,525 creating build/lib/pystack3d/assets 2026-04-09T09:06:55,525 copying pystack3d/assets/params.toml -> build/lib/pystack3d/assets 2026-04-09T09:06:55,525 installing to build/bdist.linux-armv7l/wheel 2026-04-09T09:06:55,526 running install 2026-04-09T09:06:55,548 running install_lib 2026-04-09T09:06:55,553 creating build/bdist.linux-armv7l/wheel 2026-04-09T09:06:55,556 creating build/bdist.linux-armv7l/wheel/pystack3d 2026-04-09T09:06:55,557 copying build/lib/pystack3d/intensity_rescaling.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,560 creating build/bdist.linux-armv7l/wheel/pystack3d/assets 2026-04-09T09:06:55,561 copying build/lib/pystack3d/assets/params.toml -> build/bdist.linux-armv7l/wheel/./pystack3d/assets 2026-04-09T09:06:55,563 copying build/lib/pystack3d/registration_calculation.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,565 copying build/lib/pystack3d/__init__.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,567 copying build/lib/pystack3d/registration_transformation.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,570 copying build/lib/pystack3d/bkg_removal.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,573 copying build/lib/pystack3d/stack3d.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,575 copying build/lib/pystack3d/cropping.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,578 copying build/lib/pystack3d/destriping.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,580 copying build/lib/pystack3d/intensity_rescaling_area.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,583 copying build/lib/pystack3d/resampling.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,586 copying build/lib/pystack3d/utils.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,588 copying build/lib/pystack3d/utils_multiprocessing.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,590 copying build/lib/pystack3d/utils_metadata_fibics.py -> build/bdist.linux-armv7l/wheel/./pystack3d 2026-04-09T09:06:55,593 running install_egg_info 2026-04-09T09:06:55,598 Copying pystack3d.egg-info to build/bdist.linux-armv7l/wheel/./pystack3d-2026.2-py3.11.egg-info 2026-04-09T09:06:55,609 running install_scripts 2026-04-09T09:06:55,622 creating build/bdist.linux-armv7l/wheel/pystack3d-2026.2.dist-info/WHEEL 2026-04-09T09:06:55,624 creating '/tmp/pip-wheel-ad1czycx/.tmp-d8ayl7cz/pystack3d-2026.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-09T09:06:55,627 adding 'pystack3d/__init__.py' 2026-04-09T09:06:55,630 adding 'pystack3d/bkg_removal.py' 2026-04-09T09:06:55,632 adding 'pystack3d/cropping.py' 2026-04-09T09:06:55,634 adding 'pystack3d/destriping.py' 2026-04-09T09:06:55,635 adding 'pystack3d/intensity_rescaling.py' 2026-04-09T09:06:55,637 adding 'pystack3d/intensity_rescaling_area.py' 2026-04-09T09:06:55,639 adding 'pystack3d/registration_calculation.py' 2026-04-09T09:06:55,641 adding 'pystack3d/registration_transformation.py' 2026-04-09T09:06:55,643 adding 'pystack3d/resampling.py' 2026-04-09T09:06:55,646 adding 'pystack3d/stack3d.py' 2026-04-09T09:06:55,648 adding 'pystack3d/utils.py' 2026-04-09T09:06:55,649 adding 'pystack3d/utils_metadata_fibics.py' 2026-04-09T09:06:55,651 adding 'pystack3d/utils_multiprocessing.py' 2026-04-09T09:06:55,653 adding 'pystack3d/assets/params.toml' 2026-04-09T09:06:55,661 adding 'pystack3d-2026.2.dist-info/licenses/LICENSE' 2026-04-09T09:06:55,663 adding 'pystack3d-2026.2.dist-info/METADATA' 2026-04-09T09:06:55,664 adding 'pystack3d-2026.2.dist-info/WHEEL' 2026-04-09T09:06:55,665 adding 'pystack3d-2026.2.dist-info/top_level.txt' 2026-04-09T09:06:55,666 adding 'pystack3d-2026.2.dist-info/RECORD' 2026-04-09T09:06:55,668 removing build/bdist.linux-armv7l/wheel 2026-04-09T09:06:55,774 Building wheel for pystack3d (pyproject.toml): finished with status 'done' 2026-04-09T09:06:55,779 Created wheel for pystack3d: filename=pystack3d-2026.2-py3-none-any.whl size=53735 sha256=15622ef0ec1dcbf56c5b2a2b39bc521de9abc31d3cb8213d26eb9cae4e2a01d4 2026-04-09T09:06:55,780 Stored in directory: /tmp/pip-ephem-wheel-cache-mtvvgj8t/wheels/20/18/c0/c817cbf20b98eddda1867d8230fd67c2bd018c2d9444abf6b0 2026-04-09T09:06:55,793 Successfully built pystack3d 2026-04-09T09:06:55,798 Removed build tracker: '/tmp/pip-build-tracker-n5_n_zes'