2026-04-09T21:15:31,892 Created temporary directory: /tmp/pip-ephem-wheel-cache-xymomrob 2026-04-09T21:15:31,893 Created temporary directory: /tmp/pip-build-tracker-w3kx3136 2026-04-09T21:15:31,894 Initialized build tracking at /tmp/pip-build-tracker-w3kx3136 2026-04-09T21:15:31,894 Created build tracker: /tmp/pip-build-tracker-w3kx3136 2026-04-09T21:15:31,895 Entered build tracker: /tmp/pip-build-tracker-w3kx3136 2026-04-09T21:15:31,896 Created temporary directory: /tmp/pip-wheel-495ys0q2 2026-04-09T21:15:31,899 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T21:15:31,901 Created temporary directory: /tmp/pip-ephem-wheel-cache-t9vzyh79 2026-04-09T21:15:31,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T21:15:31,926 2 location(s) to search for versions of galaxy-app: 2026-04-09T21:15:31,926 * https://pypi.org/simple/galaxy-app/ 2026-04-09T21:15:31,926 * https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T21:15:31,927 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2026-04-09T21:15:31,927 Getting page https://pypi.org/simple/galaxy-app/ 2026-04-09T21:15:31,929 Found index url https://pypi.org/simple 2026-04-09T21:15:32,159 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2026-04-09T21:15:32,174 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from 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(from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.dev0 2026-04-09T21:15:32,237 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d3/48/39f108b5edd2537999e65765e3c7c79e8d2a0ffccc33033e04ccf5c0f61d/galaxy_app-25.1.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,238 Found link https://files.pythonhosted.org/packages/da/d5/995e5c17d2321d004186b2d3ca2f3f72f22effa774117ea51150ed7eb78e/galaxy_app-25.1.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.0 2026-04-09T21:15:32,239 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/51/7f/a5520e446153a7ffe588d08a9808da189ffce5a6a1bc7c46e62fc2880754/galaxy_app-25.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,240 Found link https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.1 2026-04-09T21:15:32,240 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b7/01/4fd550fb22b85840cf3741fd99fa631724dd956ad66d2e17c7c408abbc4f/galaxy_app-25.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,241 Found link https://files.pythonhosted.org/packages/3c/7e/ef85205d291604410e6b45db4ff424961aa98be054f7a206b8533b6d4921/galaxy_app-25.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.2 2026-04-09T21:15:32,242 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/53/1f/b8eb5d528c90596bdd2fb45770609f6c6fb4c629ef28b46f60479a6a23f6/galaxy_app-26.0.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-04-09T21:15:32,243 Found link https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.1.dev0 2026-04-09T21:15:32,243 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T21:15:32,244 Getting page https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T21:15:32,245 Found index url https://www.piwheels.org/simple 2026-04-09T21:15:32,419 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2026-04-09T21:15:32,430 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-25.1.2-py3-none-any.whl#sha256=6c64b157b588d45d53b6afa96644e7f3cfd9f2cd56ef5c9cb440e757a74d190e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,430 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.1-py3-none-any.whl#sha256=e36d461cfc8d19044d4e0caf045c4e61f456cad83d7ffdf251cf5950adaa57a8 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,431 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.0-py3-none-any.whl#sha256=c29efe70b9321aabf3211b8d2989ffcd791cf8f68f30e2b1bec4deac58d3afca (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,432 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.1.dev0-py3-none-any.whl#sha256=61192b47a8f5aa09dfa50eab6cc409838da6a6c65b1bc2362ee8b549a053800d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-04-09T21:15:32,432 Skipping link: No binaries permitted for galaxy-app: 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https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T21:15:32,448 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T21:15:32,449 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T21:15:32,449 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2026-04-09T21:15:32,450 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2026-04-09T21:15:32,450 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T21:15:32,451 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2026-04-09T21:15:32,476 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2026-04-09T21:15:32,495 Collecting galaxy-app==26.0.1.dev0 2026-04-09T21:15:32,497 Created temporary directory: /tmp/pip-unpack-_8vj3lhh 2026-04-09T21:15:32,740 Downloading galaxy_app-26.0.1.dev0.tar.gz (1.4 MB) 2026-04-09T21:15:34,841 Added galaxy-app==26.0.1.dev0 from https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-w3kx3136' 2026-04-09T21:15:34,845 Created temporary directory: /tmp/pip-build-env-fj52oa0z 2026-04-09T21:15:35,061 Installing build dependencies: started 2026-04-09T21:15:35,063 Running command pip subprocess to install build dependencies 2026-04-09T21:15:36,276 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-09T21:15:37,086 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T21:15:37,112 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T21:15:38,902 Collecting setuptools 2026-04-09T21:15:39,013 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-09T21:15:42,009 Installing collected packages: setuptools 2026-04-09T21:15:45,639 Successfully installed setuptools-82.0.1 2026-04-09T21:15:45,912 Installing build dependencies: finished with status 'done' 2026-04-09T21:15:45,918 Getting requirements to build wheel: started 2026-04-09T21:15:45,919 Running command Getting requirements to build wheel 2026-04-09T21:15:46,837 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:46,837 !! 2026-04-09T21:15:46,838 ******************************************************************************** 2026-04-09T21:15:46,839 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:46,840 `keywords = ['Galaxy']` 2026-04-09T21:15:46,842 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:46,843 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T21:15:46,844 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:46,845 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T21:15:46,845 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:46,846 configuration. 2026-04-09T21:15:46,846 ******************************************************************************** 2026-04-09T21:15:46,847 !! 2026-04-09T21:15:46,847 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:46,848 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:46,848 !! 2026-04-09T21:15:46,849 ******************************************************************************** 2026-04-09T21:15:46,850 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:46,851 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T21:15:46,852 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:46,853 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T21:15:46,854 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:46,855 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T21:15:46,856 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:46,856 configuration. 2026-04-09T21:15:46,857 ******************************************************************************** 2026-04-09T21:15:46,859 !! 2026-04-09T21:15:46,859 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:46,860 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:46,861 !! 2026-04-09T21:15:46,862 ******************************************************************************** 2026-04-09T21:15:46,862 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:46,863 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T21:15:46,865 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:46,865 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T21:15:46,866 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:46,867 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T21:15:46,868 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:46,869 configuration. 2026-04-09T21:15:46,869 ******************************************************************************** 2026-04-09T21:15:46,871 !! 2026-04-09T21:15:46,871 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:46,929 running egg_info 2026-04-09T21:15:46,936 writing galaxy_app.egg-info/PKG-INFO 2026-04-09T21:15:46,956 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-04-09T21:15:46,960 writing requirements to galaxy_app.egg-info/requires.txt 2026-04-09T21:15:46,962 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-04-09T21:15:47,057 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:47,152 reading manifest template 'MANIFEST.in' 2026-04-09T21:15:47,720 adding license file 'LICENSE' 2026-04-09T21:15:47,751 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:47,851 Getting requirements to build wheel: finished with status 'done' 2026-04-09T21:15:47,854 Created temporary directory: /tmp/pip-modern-metadata-5l9vxw3k 2026-04-09T21:15:47,856 Preparing metadata (pyproject.toml): started 2026-04-09T21:15:47,857 Running command Preparing metadata (pyproject.toml) 2026-04-09T21:15:49,355 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:49,355 !! 2026-04-09T21:15:49,357 ******************************************************************************** 2026-04-09T21:15:49,358 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:49,360 `keywords = ['Galaxy']` 2026-04-09T21:15:49,362 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:49,363 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T21:15:49,365 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:49,367 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T21:15:49,368 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:49,369 configuration. 2026-04-09T21:15:49,370 ******************************************************************************** 2026-04-09T21:15:49,372 !! 2026-04-09T21:15:49,373 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:49,374 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:49,375 !! 2026-04-09T21:15:49,377 ******************************************************************************** 2026-04-09T21:15:49,378 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:49,380 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T21:15:49,381 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:49,382 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T21:15:49,383 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:49,384 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T21:15:49,384 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:49,385 configuration. 2026-04-09T21:15:49,386 ******************************************************************************** 2026-04-09T21:15:49,387 !! 2026-04-09T21:15:49,388 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:49,388 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:49,389 !! 2026-04-09T21:15:49,390 ******************************************************************************** 2026-04-09T21:15:49,390 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:49,391 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T21:15:49,392 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:49,393 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T21:15:49,394 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:49,395 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T21:15:49,396 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:49,396 configuration. 2026-04-09T21:15:49,397 ******************************************************************************** 2026-04-09T21:15:49,398 !! 2026-04-09T21:15:49,399 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:49,892 running dist_info 2026-04-09T21:15:49,902 creating /tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info 2026-04-09T21:15:49,903 writing /tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/PKG-INFO 2026-04-09T21:15:49,993 writing dependency_links to /tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/dependency_links.txt 2026-04-09T21:15:49,998 writing requirements to /tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/requires.txt 2026-04-09T21:15:50,000 writing top-level names to /tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/top_level.txt 2026-04-09T21:15:50,003 writing manifest file '/tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:50,348 reading manifest file '/tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:50,352 reading manifest template 'MANIFEST.in' 2026-04-09T21:15:51,874 adding license file 'LICENSE' 2026-04-09T21:15:51,910 writing manifest file '/tmp/pip-modern-metadata-5l9vxw3k/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:51,914 creating '/tmp/pip-modern-metadata-5l9vxw3k/galaxy_app-26.0.1.dev0.dist-info' 2026-04-09T21:15:52,196 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-09T21:15:52,213 Source in /tmp/pip-wheel-495ys0q2/galaxy-app_c450f033c0a94657bb96642fe889ccee has version 26.0.1.dev0, which satisfies requirement galaxy-app==26.0.1.dev0 from https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz 2026-04-09T21:15:52,214 Removed galaxy-app==26.0.1.dev0 from https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-w3kx3136' 2026-04-09T21:15:52,244 Created temporary directory: /tmp/pip-unpack-bg0meb8s 2026-04-09T21:15:52,245 Building wheels for collected packages: galaxy-app 2026-04-09T21:15:52,251 Created temporary directory: /tmp/pip-wheel-zefh93zg 2026-04-09T21:15:52,251 Destination directory: /tmp/pip-wheel-zefh93zg 2026-04-09T21:15:52,254 Building wheel for galaxy-app (pyproject.toml): started 2026-04-09T21:15:52,255 Running command Building wheel for galaxy-app (pyproject.toml) 2026-04-09T21:15:52,893 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:52,894 !! 2026-04-09T21:15:52,895 ******************************************************************************** 2026-04-09T21:15:52,896 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:52,896 `keywords = ['Galaxy']` 2026-04-09T21:15:52,897 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:52,898 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T21:15:52,899 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:52,899 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T21:15:52,900 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:52,900 configuration. 2026-04-09T21:15:52,901 ******************************************************************************** 2026-04-09T21:15:52,902 !! 2026-04-09T21:15:52,903 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:52,903 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:52,904 !! 2026-04-09T21:15:52,905 ******************************************************************************** 2026-04-09T21:15:52,905 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:52,907 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T21:15:52,908 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:52,908 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T21:15:52,910 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:52,911 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T21:15:52,912 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:52,912 configuration. 2026-04-09T21:15:52,913 ******************************************************************************** 2026-04-09T21:15:52,914 !! 2026-04-09T21:15:52,915 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:52,915 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T21:15:52,916 !! 2026-04-09T21:15:52,917 ******************************************************************************** 2026-04-09T21:15:52,918 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T21:15:52,919 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T21:15:52,920 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T21:15:52,921 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T21:15:52,923 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T21:15:52,925 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T21:15:52,926 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T21:15:52,927 configuration. 2026-04-09T21:15:52,928 ******************************************************************************** 2026-04-09T21:15:52,929 !! 2026-04-09T21:15:52,929 _handle_missing_dynamic(dist, project_table) 2026-04-09T21:15:52,985 running bdist_wheel 2026-04-09T21:15:53,003 running build 2026-04-09T21:15:53,003 running build_py 2026-04-09T21:15:53,009 creating build/lib/galaxy 2026-04-09T21:15:53,012 copying galaxy/queues.py -> build/lib/galaxy 2026-04-09T21:15:53,015 copying galaxy/app.py -> build/lib/galaxy 2026-04-09T21:15:53,062 copying galaxy/queue_worker.py -> build/lib/galaxy 2026-04-09T21:15:53,069 copying galaxy/main.py -> build/lib/galaxy 2026-04-09T21:15:53,075 copying galaxy/config_watchers.py -> build/lib/galaxy 2026-04-09T21:15:53,081 copying galaxy/di.py -> build/lib/galaxy 2026-04-09T21:15:53,087 copying galaxy/main_config.py -> build/lib/galaxy 2026-04-09T21:15:53,092 copying galaxy/__init__.py -> build/lib/galaxy 2026-04-09T21:15:53,096 copying galaxy/structured_app.py -> build/lib/galaxy 2026-04-09T21:15:53,101 creating build/lib/galaxy_ext 2026-04-09T21:15:53,104 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2026-04-09T21:15:53,106 creating build/lib/tool_shed_client 2026-04-09T21:15:53,108 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2026-04-09T21:15:53,110 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2026-04-09T21:15:53,113 creating build/lib/galaxy/visualization 2026-04-09T21:15:53,115 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2026-04-09T21:15:53,118 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2026-04-09T21:15:53,121 creating build/lib/galaxy/actions 2026-04-09T21:15:53,122 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2026-04-09T21:15:53,125 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2026-04-09T21:15:53,127 creating build/lib/galaxy/celery 2026-04-09T21:15:53,129 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2026-04-09T21:15:53,131 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2026-04-09T21:15:53,134 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2026-04-09T21:15:53,136 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2026-04-09T21:15:53,139 creating build/lib/galaxy/dependencies 2026-04-09T21:15:53,140 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2026-04-09T21:15:53,143 copying galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2026-04-09T21:15:53,147 creating build/lib/galaxy/managers 2026-04-09T21:15:53,148 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,150 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,153 copying galaxy/managers/headers_encryption.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,155 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,157 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,160 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,162 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,165 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,168 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,170 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,172 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,175 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,177 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,181 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,183 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,185 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,188 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,190 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,192 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,194 copying galaxy/managers/agents.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,196 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,198 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,202 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,204 copying galaxy/managers/tours.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,206 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,209 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,210 copying galaxy/managers/credentials.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,213 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,215 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,217 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,219 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,221 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,223 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,226 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,231 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,234 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,236 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,238 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,241 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,244 copying galaxy/managers/landing.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,247 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,249 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,252 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,255 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,257 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,259 copying galaxy/managers/chat.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,262 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,264 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,267 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,269 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,271 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,273 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,276 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,278 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,280 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,283 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,285 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,287 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,289 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,292 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,294 copying galaxy/managers/workflow_completion.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,296 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,298 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,301 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,303 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2026-04-09T21:15:53,306 creating build/lib/galaxy/tool_shed 2026-04-09T21:15:53,307 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2026-04-09T21:15:53,309 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2026-04-09T21:15:53,310 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2026-04-09T21:15:53,312 creating build/lib/galaxy/forms 2026-04-09T21:15:53,313 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2026-04-09T21:15:53,315 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2026-04-09T21:15:53,317 creating build/lib/galaxy/webhooks 2026-04-09T21:15:53,318 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2026-04-09T21:15:53,321 creating build/lib/galaxy/agents 2026-04-09T21:15:53,322 copying galaxy/agents/custom_tool.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,324 copying galaxy/agents/orchestrator.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,326 copying galaxy/agents/registry.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,328 copying galaxy/agents/router.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,331 copying galaxy/agents/tools.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,334 copying galaxy/agents/error_analysis.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,336 copying galaxy/agents/base.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,339 copying galaxy/agents/__init__.py -> build/lib/galaxy/agents 2026-04-09T21:15:53,341 creating build/lib/galaxy/workflow 2026-04-09T21:15:53,343 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,345 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,347 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,350 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,353 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,356 copying galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,358 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,361 copying galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,363 copying galaxy/workflow/completion_monitor.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,365 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,367 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,369 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2026-04-09T21:15:53,373 creating build/lib/galaxy/work 2026-04-09T21:15:53,374 copying galaxy/work/context.py -> build/lib/galaxy/work 2026-04-09T21:15:53,377 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2026-04-09T21:15:53,379 creating build/lib/galaxy/tools 2026-04-09T21:15:53,380 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,383 copying galaxy/tools/_types.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,385 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,387 copying galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,389 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,392 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,393 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,396 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,398 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,401 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,403 copying galaxy/tools/stock.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,405 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,407 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,409 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,411 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,416 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2026-04-09T21:15:53,418 creating build/lib/galaxy/app_unittest_utils 2026-04-09T21:15:53,419 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T21:15:53,422 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T21:15:53,424 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T21:15:53,427 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T21:15:53,429 creating build/lib/galaxy/jobs 2026-04-09T21:15:53,430 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,434 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,436 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,438 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,441 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,444 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,446 copying galaxy/jobs/job_destination.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,448 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,451 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2026-04-09T21:15:53,456 creating build/lib/galaxy/short_term_storage 2026-04-09T21:15:53,457 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2026-04-09T21:15:53,460 creating build/lib/galaxy/carbon_emissions 2026-04-09T21:15:53,462 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2026-04-09T21:15:53,465 creating build/lib/galaxy/authnz 2026-04-09T21:15:53,467 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,473 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,478 copying galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,481 copying galaxy/authnz/keycloak.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,484 copying galaxy/authnz/cilogon.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,486 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,492 copying galaxy/authnz/oidc_utils.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,498 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,505 copying galaxy/authnz/oidc.py -> build/lib/galaxy/authnz 2026-04-09T21:15:53,512 creating build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,516 copying galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,523 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,526 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,530 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,535 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,539 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2026-04-09T21:15:53,544 creating build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,547 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,592 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,595 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,597 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,600 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T21:15:53,603 creating build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,604 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,607 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,610 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,612 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,615 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:53,618 creating build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,620 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,624 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,628 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,631 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,634 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,637 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,639 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,642 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,645 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,648 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,650 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2026-04-09T21:15:53,654 creating build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,656 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,658 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,661 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,666 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,671 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:53,673 creating build/lib/galaxy/tool_shed/metadata 2026-04-09T21:15:53,675 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2026-04-09T21:15:53,681 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2026-04-09T21:15:53,684 creating build/lib/galaxy/tool_shed/tools 2026-04-09T21:15:53,685 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T21:15:53,688 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T21:15:53,690 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T21:15:53,693 creating build/lib/galaxy/tool_shed/unittest_utils 2026-04-09T21:15:53,694 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2026-04-09T21:15:53,697 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:53,699 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:53,701 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:53,704 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:53,706 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:53,709 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:53,712 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:53,715 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:53,716 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:53,720 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:53,723 creating build/lib/galaxy/workflow/reports 2026-04-09T21:15:53,724 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2026-04-09T21:15:53,727 creating build/lib/galaxy/workflow/completion_hooks 2026-04-09T21:15:53,729 copying galaxy/workflow/completion_hooks/notification.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T21:15:53,733 copying galaxy/workflow/completion_hooks/base.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T21:15:53,735 copying galaxy/workflow/completion_hooks/__init__.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T21:15:53,738 copying galaxy/workflow/completion_hooks/export.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T21:15:53,741 creating build/lib/galaxy/workflow/resources 2026-04-09T21:15:53,742 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2026-04-09T21:15:53,746 creating build/lib/galaxy/workflow/schedulers 2026-04-09T21:15:53,747 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2026-04-09T21:15:53,750 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2026-04-09T21:15:53,752 creating build/lib/galaxy/workflow/refactor 2026-04-09T21:15:53,754 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2026-04-09T21:15:53,759 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2026-04-09T21:15:53,762 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2026-04-09T21:15:53,764 creating build/lib/galaxy/workflow/reports/generators 2026-04-09T21:15:53,765 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2026-04-09T21:15:53,768 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2026-04-09T21:15:53,770 creating build/lib/galaxy/tools/actions 2026-04-09T21:15:53,771 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,774 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,779 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,785 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,789 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,795 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,801 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,847 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2026-04-09T21:15:53,851 creating build/lib/galaxy/tools/filters 2026-04-09T21:15:53,853 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2026-04-09T21:15:53,857 creating build/lib/galaxy/tools/util 2026-04-09T21:15:53,859 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2026-04-09T21:15:53,863 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2026-04-09T21:15:53,869 creating build/lib/galaxy/tools/fetch 2026-04-09T21:15:53,872 copying galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2026-04-09T21:15:53,878 copying galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2026-04-09T21:15:53,883 creating build/lib/galaxy/tools/data 2026-04-09T21:15:53,885 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2026-04-09T21:15:53,894 creating build/lib/galaxy/tools/data_manager 2026-04-09T21:15:53,897 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2026-04-09T21:15:54,120 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2026-04-09T21:15:54,122 creating build/lib/galaxy/tools/search 2026-04-09T21:15:54,123 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2026-04-09T21:15:54,126 creating build/lib/galaxy/tools/expressions 2026-04-09T21:15:54,127 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2026-04-09T21:15:54,129 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2026-04-09T21:15:54,131 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2026-04-09T21:15:54,132 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2026-04-09T21:15:54,135 creating build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,136 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,138 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,141 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,143 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,145 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,148 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,151 copying galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,153 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,156 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,158 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,164 copying galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,165 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,168 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,171 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,172 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2026-04-09T21:15:54,175 creating build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:54,176 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:54,178 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:54,180 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:54,183 creating build/lib/galaxy/tools/error_reports 2026-04-09T21:15:54,184 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2026-04-09T21:15:54,186 creating build/lib/galaxy/tools/util/galaxyops 2026-04-09T21:15:54,187 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2026-04-09T21:15:54,189 creating build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,190 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,192 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,194 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,197 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,198 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,200 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,203 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,205 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,206 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T21:15:54,209 creating build/lib/galaxy/jobs/splitters 2026-04-09T21:15:54,210 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2026-04-09T21:15:54,212 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2026-04-09T21:15:54,214 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2026-04-09T21:15:54,217 creating build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,218 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,220 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,224 copying galaxy/jobs/runners/gcp_batch.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,228 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,231 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,237 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,240 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,244 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,246 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,250 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,253 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,255 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,258 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,260 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,263 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,266 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2026-04-09T21:15:54,268 creating build/lib/galaxy/jobs/rules 2026-04-09T21:15:54,270 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2026-04-09T21:15:54,272 creating build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,273 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,276 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,278 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,280 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,283 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,285 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,287 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,289 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T21:15:54,292 creating build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T21:15:54,293 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T21:15:54,296 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T21:15:54,298 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T21:15:54,301 creating build/lib/galaxy/jobs/runners/util/cli 2026-04-09T21:15:54,302 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2026-04-09T21:15:54,304 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2026-04-09T21:15:54,307 creating build/lib/galaxy/jobs/runners/util/condor 2026-04-09T21:15:54,309 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2026-04-09T21:15:54,311 creating build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:54,313 copying galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:54,316 copying galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:54,318 creating build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:54,319 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:54,323 creating build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:54,324 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:54,327 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:54,329 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:54,332 creating build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,333 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,336 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,338 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,341 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,344 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,346 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:54,349 creating build/lib/galaxy_ext/container_monitor 2026-04-09T21:15:54,350 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2026-04-09T21:15:54,352 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2026-04-09T21:15:54,355 creating build/lib/galaxy_ext/metadata 2026-04-09T21:15:54,356 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2026-04-09T21:15:54,358 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2026-04-09T21:15:54,361 creating build/lib/galaxy_ext/expressions 2026-04-09T21:15:54,362 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2026-04-09T21:15:54,364 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2026-04-09T21:15:54,367 creating build/lib/tool_shed_client/schema 2026-04-09T21:15:54,369 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2026-04-09T21:15:54,371 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2026-04-09T21:15:54,374 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2026-04-09T21:15:54,377 running egg_info 2026-04-09T21:15:54,387 writing galaxy_app.egg-info/PKG-INFO 2026-04-09T21:15:54,400 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-04-09T21:15:54,403 writing requirements to galaxy_app.egg-info/requires.txt 2026-04-09T21:15:54,405 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-04-09T21:15:54,481 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:54,540 reading manifest template 'MANIFEST.in' 2026-04-09T21:15:55,145 adding license file 'LICENSE' 2026-04-09T21:15:55,175 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T21:15:55,181 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2026-04-09T21:15:55,182 !! 2026-04-09T21:15:55,183 ******************************************************************************** 2026-04-09T21:15:55,183 ############################ 2026-04-09T21:15:55,184 # Package would be ignored # 2026-04-09T21:15:55,184 ############################ 2026-04-09T21:15:55,185 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2026-04-09T21:15:55,185 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,186 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,187 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2026-04-09T21:15:55,187 to the `packages` configuration field. 2026-04-09T21:15:55,188 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,189 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,190 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,192 If you don't want 'galaxy.tools.bundled' to be distributed and are 2026-04-09T21:15:55,193 already explicitly excluding 'galaxy.tools.bundled' via 2026-04-09T21:15:55,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,194 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,195 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,198 even if it does not contain any `.py` files. 2026-04-09T21:15:55,198 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,199 directory, all directories are treated like packages. 2026-04-09T21:15:55,199 ******************************************************************************** 2026-04-09T21:15:55,200 !! 2026-04-09T21:15:55,200 check.warn(importable) 2026-04-09T21:15:55,201 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2026-04-09T21:15:55,201 !! 2026-04-09T21:15:55,202 ******************************************************************************** 2026-04-09T21:15:55,202 ############################ 2026-04-09T21:15:55,203 # Package would be ignored # 2026-04-09T21:15:55,203 ############################ 2026-04-09T21:15:55,204 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2026-04-09T21:15:55,204 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,205 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,206 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2026-04-09T21:15:55,206 to the `packages` configuration field. 2026-04-09T21:15:55,207 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,208 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,209 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,211 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2026-04-09T21:15:55,211 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2026-04-09T21:15:55,212 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,213 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,214 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,215 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,216 even if it does not contain any `.py` files. 2026-04-09T21:15:55,217 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,217 directory, all directories are treated like packages. 2026-04-09T21:15:55,218 ******************************************************************************** 2026-04-09T21:15:55,219 !! 2026-04-09T21:15:55,219 check.warn(importable) 2026-04-09T21:15:55,220 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2026-04-09T21:15:55,220 !! 2026-04-09T21:15:55,221 ******************************************************************************** 2026-04-09T21:15:55,222 ############################ 2026-04-09T21:15:55,222 # Package would be ignored # 2026-04-09T21:15:55,223 ############################ 2026-04-09T21:15:55,224 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2026-04-09T21:15:55,224 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,225 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,226 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2026-04-09T21:15:55,226 to the `packages` configuration field. 2026-04-09T21:15:55,227 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,228 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,229 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,230 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2026-04-09T21:15:55,231 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2026-04-09T21:15:55,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,232 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,233 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,233 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,235 even if it does not contain any `.py` files. 2026-04-09T21:15:55,236 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,236 directory, all directories are treated like packages. 2026-04-09T21:15:55,236 ******************************************************************************** 2026-04-09T21:15:55,237 !! 2026-04-09T21:15:55,238 check.warn(importable) 2026-04-09T21:15:55,238 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2026-04-09T21:15:55,239 !! 2026-04-09T21:15:55,240 ******************************************************************************** 2026-04-09T21:15:55,240 ############################ 2026-04-09T21:15:55,240 # Package would be ignored # 2026-04-09T21:15:55,241 ############################ 2026-04-09T21:15:55,241 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2026-04-09T21:15:55,242 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,243 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,243 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2026-04-09T21:15:55,244 to the `packages` configuration field. 2026-04-09T21:15:55,245 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,245 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,245 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,246 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,247 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,248 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2026-04-09T21:15:55,249 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2026-04-09T21:15:55,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,251 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,251 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,254 even if it does not contain any `.py` files. 2026-04-09T21:15:55,255 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,255 directory, all directories are treated like packages. 2026-04-09T21:15:55,256 ******************************************************************************** 2026-04-09T21:15:55,257 !! 2026-04-09T21:15:55,257 check.warn(importable) 2026-04-09T21:15:55,258 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2026-04-09T21:15:55,258 !! 2026-04-09T21:15:55,259 ******************************************************************************** 2026-04-09T21:15:55,260 ############################ 2026-04-09T21:15:55,260 # Package would be ignored # 2026-04-09T21:15:55,261 ############################ 2026-04-09T21:15:55,261 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2026-04-09T21:15:55,262 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,263 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,263 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2026-04-09T21:15:55,264 to the `packages` configuration field. 2026-04-09T21:15:55,265 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,265 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,266 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,267 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,268 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,269 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2026-04-09T21:15:55,269 already explicitly excluding 'galaxy.tools.bundled.extract' via 2026-04-09T21:15:55,270 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,270 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,271 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,272 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,275 even if it does not contain any `.py` files. 2026-04-09T21:15:55,276 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,277 directory, all directories are treated like packages. 2026-04-09T21:15:55,277 ******************************************************************************** 2026-04-09T21:15:55,278 !! 2026-04-09T21:15:55,279 check.warn(importable) 2026-04-09T21:15:55,280 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2026-04-09T21:15:55,281 !! 2026-04-09T21:15:55,282 ******************************************************************************** 2026-04-09T21:15:55,282 ############################ 2026-04-09T21:15:55,283 # Package would be ignored # 2026-04-09T21:15:55,283 ############################ 2026-04-09T21:15:55,284 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2026-04-09T21:15:55,285 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,286 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,286 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2026-04-09T21:15:55,287 to the `packages` configuration field. 2026-04-09T21:15:55,288 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,289 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,289 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,290 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,293 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2026-04-09T21:15:55,294 already explicitly excluding 'galaxy.tools.bundled.filters' via 2026-04-09T21:15:55,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,295 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,297 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,298 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,300 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,300 even if it does not contain any `.py` files. 2026-04-09T21:15:55,301 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,301 directory, all directories are treated like packages. 2026-04-09T21:15:55,302 ******************************************************************************** 2026-04-09T21:15:55,303 !! 2026-04-09T21:15:55,304 check.warn(importable) 2026-04-09T21:15:55,304 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2026-04-09T21:15:55,305 !! 2026-04-09T21:15:55,306 ******************************************************************************** 2026-04-09T21:15:55,307 ############################ 2026-04-09T21:15:55,308 # Package would be ignored # 2026-04-09T21:15:55,308 ############################ 2026-04-09T21:15:55,309 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2026-04-09T21:15:55,310 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,311 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,312 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2026-04-09T21:15:55,312 to the `packages` configuration field. 2026-04-09T21:15:55,314 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,315 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,316 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,318 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2026-04-09T21:15:55,319 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2026-04-09T21:15:55,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,320 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,321 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,328 even if it does not contain any `.py` files. 2026-04-09T21:15:55,330 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,331 directory, all directories are treated like packages. 2026-04-09T21:15:55,332 ******************************************************************************** 2026-04-09T21:15:55,334 !! 2026-04-09T21:15:55,334 check.warn(importable) 2026-04-09T21:15:55,335 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2026-04-09T21:15:55,335 !! 2026-04-09T21:15:55,337 ******************************************************************************** 2026-04-09T21:15:55,337 ############################ 2026-04-09T21:15:55,338 # Package would be ignored # 2026-04-09T21:15:55,339 ############################ 2026-04-09T21:15:55,339 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2026-04-09T21:15:55,340 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,341 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,341 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2026-04-09T21:15:55,342 to the `packages` configuration field. 2026-04-09T21:15:55,343 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,344 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,345 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,346 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,347 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,348 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2026-04-09T21:15:55,349 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2026-04-09T21:15:55,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,351 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,352 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,355 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,356 even if it does not contain any `.py` files. 2026-04-09T21:15:55,356 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,357 directory, all directories are treated like packages. 2026-04-09T21:15:55,357 ******************************************************************************** 2026-04-09T21:15:55,359 !! 2026-04-09T21:15:55,359 check.warn(importable) 2026-04-09T21:15:55,360 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2026-04-09T21:15:55,360 !! 2026-04-09T21:15:55,362 ******************************************************************************** 2026-04-09T21:15:55,362 ############################ 2026-04-09T21:15:55,363 # Package would be ignored # 2026-04-09T21:15:55,364 ############################ 2026-04-09T21:15:55,364 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2026-04-09T21:15:55,365 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,366 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,367 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2026-04-09T21:15:55,367 to the `packages` configuration field. 2026-04-09T21:15:55,369 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,369 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,370 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,371 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,374 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2026-04-09T21:15:55,374 already explicitly excluding 'galaxy.tools.bundled.maf' via 2026-04-09T21:15:55,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,376 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,377 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,380 even if it does not contain any `.py` files. 2026-04-09T21:15:55,380 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,381 directory, all directories are treated like packages. 2026-04-09T21:15:55,381 ******************************************************************************** 2026-04-09T21:15:55,382 !! 2026-04-09T21:15:55,383 check.warn(importable) 2026-04-09T21:15:55,383 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2026-04-09T21:15:55,384 !! 2026-04-09T21:15:55,384 ******************************************************************************** 2026-04-09T21:15:55,385 ############################ 2026-04-09T21:15:55,386 # Package would be ignored # 2026-04-09T21:15:55,386 ############################ 2026-04-09T21:15:55,387 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2026-04-09T21:15:55,387 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,388 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,389 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2026-04-09T21:15:55,389 to the `packages` configuration field. 2026-04-09T21:15:55,390 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,390 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,391 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,392 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,393 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2026-04-09T21:15:55,394 already explicitly excluding 'galaxy.tools.bundled.meme' via 2026-04-09T21:15:55,394 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,395 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,396 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,397 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,400 even if it does not contain any `.py` files. 2026-04-09T21:15:55,400 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,400 directory, all directories are treated like packages. 2026-04-09T21:15:55,401 ******************************************************************************** 2026-04-09T21:15:55,402 !! 2026-04-09T21:15:55,402 check.warn(importable) 2026-04-09T21:15:55,403 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2026-04-09T21:15:55,403 !! 2026-04-09T21:15:55,404 ******************************************************************************** 2026-04-09T21:15:55,405 ############################ 2026-04-09T21:15:55,405 # Package would be ignored # 2026-04-09T21:15:55,405 ############################ 2026-04-09T21:15:55,406 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2026-04-09T21:15:55,406 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,407 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,408 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2026-04-09T21:15:55,408 to the `packages` configuration field. 2026-04-09T21:15:55,409 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,410 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,410 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,412 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,413 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,413 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2026-04-09T21:15:55,414 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2026-04-09T21:15:55,414 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,415 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,415 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,416 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,417 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,419 even if it does not contain any `.py` files. 2026-04-09T21:15:55,419 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,420 directory, all directories are treated like packages. 2026-04-09T21:15:55,420 ******************************************************************************** 2026-04-09T21:15:55,421 !! 2026-04-09T21:15:55,422 check.warn(importable) 2026-04-09T21:15:55,422 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2026-04-09T21:15:55,423 !! 2026-04-09T21:15:55,423 ******************************************************************************** 2026-04-09T21:15:55,424 ############################ 2026-04-09T21:15:55,424 # Package would be ignored # 2026-04-09T21:15:55,425 ############################ 2026-04-09T21:15:55,425 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2026-04-09T21:15:55,426 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,427 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,427 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2026-04-09T21:15:55,427 to the `packages` configuration field. 2026-04-09T21:15:55,428 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,429 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,430 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,432 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2026-04-09T21:15:55,433 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2026-04-09T21:15:55,433 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,434 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,435 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,436 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,438 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,438 even if it does not contain any `.py` files. 2026-04-09T21:15:55,439 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,439 directory, all directories are treated like packages. 2026-04-09T21:15:55,440 ******************************************************************************** 2026-04-09T21:15:55,441 !! 2026-04-09T21:15:55,441 check.warn(importable) 2026-04-09T21:15:55,442 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2026-04-09T21:15:55,443 !! 2026-04-09T21:15:55,444 ******************************************************************************** 2026-04-09T21:15:55,444 ############################ 2026-04-09T21:15:55,444 # Package would be ignored # 2026-04-09T21:15:55,445 ############################ 2026-04-09T21:15:55,445 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2026-04-09T21:15:55,446 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,446 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,447 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2026-04-09T21:15:55,447 to the `packages` configuration field. 2026-04-09T21:15:55,448 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,449 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,450 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,452 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2026-04-09T21:15:55,452 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2026-04-09T21:15:55,453 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,454 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,454 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,457 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,457 even if it does not contain any `.py` files. 2026-04-09T21:15:55,458 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,458 directory, all directories are treated like packages. 2026-04-09T21:15:55,459 ******************************************************************************** 2026-04-09T21:15:55,460 !! 2026-04-09T21:15:55,460 check.warn(importable) 2026-04-09T21:15:55,461 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2026-04-09T21:15:55,461 !! 2026-04-09T21:15:55,462 ******************************************************************************** 2026-04-09T21:15:55,463 ############################ 2026-04-09T21:15:55,463 # Package would be ignored # 2026-04-09T21:15:55,464 ############################ 2026-04-09T21:15:55,464 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2026-04-09T21:15:55,465 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,466 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,466 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2026-04-09T21:15:55,467 to the `packages` configuration field. 2026-04-09T21:15:55,468 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,469 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,470 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,472 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2026-04-09T21:15:55,472 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2026-04-09T21:15:55,473 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,473 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,474 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,477 even if it does not contain any `.py` files. 2026-04-09T21:15:55,477 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,478 directory, all directories are treated like packages. 2026-04-09T21:15:55,478 ******************************************************************************** 2026-04-09T21:15:55,479 !! 2026-04-09T21:15:55,480 check.warn(importable) 2026-04-09T21:15:55,480 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2026-04-09T21:15:55,481 !! 2026-04-09T21:15:55,482 ******************************************************************************** 2026-04-09T21:15:55,482 ############################ 2026-04-09T21:15:55,483 # Package would be ignored # 2026-04-09T21:15:55,483 ############################ 2026-04-09T21:15:55,483 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2026-04-09T21:15:55,484 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,485 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,485 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2026-04-09T21:15:55,486 to the `packages` configuration field. 2026-04-09T21:15:55,487 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,488 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,489 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,490 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,491 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2026-04-09T21:15:55,491 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2026-04-09T21:15:55,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,493 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,494 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,495 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,497 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,497 even if it does not contain any `.py` files. 2026-04-09T21:15:55,497 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,498 directory, all directories are treated like packages. 2026-04-09T21:15:55,498 ******************************************************************************** 2026-04-09T21:15:55,499 !! 2026-04-09T21:15:55,499 check.warn(importable) 2026-04-09T21:15:55,500 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2026-04-09T21:15:55,500 !! 2026-04-09T21:15:55,501 ******************************************************************************** 2026-04-09T21:15:55,502 ############################ 2026-04-09T21:15:55,502 # Package would be ignored # 2026-04-09T21:15:55,502 ############################ 2026-04-09T21:15:55,503 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2026-04-09T21:15:55,503 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,504 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,505 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2026-04-09T21:15:55,505 to the `packages` configuration field. 2026-04-09T21:15:55,506 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,507 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,508 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,510 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2026-04-09T21:15:55,510 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2026-04-09T21:15:55,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,511 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,512 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,513 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,514 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,515 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,516 even if it does not contain any `.py` files. 2026-04-09T21:15:55,516 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,517 directory, all directories are treated like packages. 2026-04-09T21:15:55,517 ******************************************************************************** 2026-04-09T21:15:55,518 !! 2026-04-09T21:15:55,519 check.warn(importable) 2026-04-09T21:15:55,519 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2026-04-09T21:15:55,520 !! 2026-04-09T21:15:55,521 ******************************************************************************** 2026-04-09T21:15:55,521 ############################ 2026-04-09T21:15:55,522 # Package would be ignored # 2026-04-09T21:15:55,522 ############################ 2026-04-09T21:15:55,523 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2026-04-09T21:15:55,523 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,524 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,525 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2026-04-09T21:15:55,525 to the `packages` configuration field. 2026-04-09T21:15:55,526 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,526 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,527 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,528 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,530 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2026-04-09T21:15:55,530 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2026-04-09T21:15:55,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,531 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,532 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,535 even if it does not contain any `.py` files. 2026-04-09T21:15:55,536 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,536 directory, all directories are treated like packages. 2026-04-09T21:15:55,537 ******************************************************************************** 2026-04-09T21:15:55,538 !! 2026-04-09T21:15:55,538 check.warn(importable) 2026-04-09T21:15:55,539 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2026-04-09T21:15:55,539 !! 2026-04-09T21:15:55,540 ******************************************************************************** 2026-04-09T21:15:55,541 ############################ 2026-04-09T21:15:55,541 # Package would be ignored # 2026-04-09T21:15:55,542 ############################ 2026-04-09T21:15:55,542 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2026-04-09T21:15:55,543 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,544 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,544 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2026-04-09T21:15:55,545 to the `packages` configuration field. 2026-04-09T21:15:55,546 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,547 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,548 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,549 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,550 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2026-04-09T21:15:55,550 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2026-04-09T21:15:55,551 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,551 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,552 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,553 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,553 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,555 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,555 even if it does not contain any `.py` files. 2026-04-09T21:15:55,555 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,556 directory, all directories are treated like packages. 2026-04-09T21:15:55,556 ******************************************************************************** 2026-04-09T21:15:55,557 !! 2026-04-09T21:15:55,558 check.warn(importable) 2026-04-09T21:15:55,558 /tmp/pip-build-env-fj52oa0z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2026-04-09T21:15:55,559 !! 2026-04-09T21:15:55,560 ******************************************************************************** 2026-04-09T21:15:55,560 ############################ 2026-04-09T21:15:55,560 # Package would be ignored # 2026-04-09T21:15:55,561 ############################ 2026-04-09T21:15:55,561 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2026-04-09T21:15:55,562 but it is absent from setuptools' `packages` configuration. 2026-04-09T21:15:55,563 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T21:15:55,563 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2026-04-09T21:15:55,564 to the `packages` configuration field. 2026-04-09T21:15:55,565 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T21:15:55,565 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T21:15:55,566 instead of `find_packages(...)`/`find:`). 2026-04-09T21:15:55,567 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T21:15:55,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T21:15:55,569 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2026-04-09T21:15:55,569 already explicitly excluding 'galaxy.tools.bundled.stats' via 2026-04-09T21:15:55,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T21:15:55,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T21:15:55,570 combination with a more fine grained `package-data` configuration. 2026-04-09T21:15:55,571 You can read more about "package data files" on setuptools documentation page: 2026-04-09T21:15:55,572 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T21:15:55,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T21:15:55,574 even if it does not contain any `.py` files. 2026-04-09T21:15:55,575 On the other hand, currently there is no concept of package data 2026-04-09T21:15:55,575 directory, all directories are treated like packages. 2026-04-09T21:15:55,576 ******************************************************************************** 2026-04-09T21:15:55,577 !! 2026-04-09T21:15:55,578 check.warn(importable) 2026-04-09T21:15:55,578 copying galaxy/py.typed -> build/lib/galaxy 2026-04-09T21:15:55,579 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2026-04-09T21:15:55,579 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2026-04-09T21:15:55,580 copying galaxy/dependencies/conditional-constraints.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,580 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,581 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,581 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,581 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,582 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,582 copying galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,583 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,583 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,583 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2026-04-09T21:15:55,584 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2026-04-09T21:15:55,584 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2026-04-09T21:15:55,585 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,585 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,586 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,586 copying galaxy/tools/convert_sample_sheet.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,586 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,587 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,587 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,588 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,588 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,589 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,589 copying galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,590 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,590 copying galaxy/tools/filter_failed_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,591 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,591 copying galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,592 copying galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,592 copying galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,593 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,593 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,594 copying galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,594 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,595 copying galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,595 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,596 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,596 copying galaxy/tools/nest_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,597 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,597 copying galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,598 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,598 copying galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,599 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,599 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,600 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2026-04-09T21:15:55,600 creating build/lib/galaxy/tools/bundled 2026-04-09T21:15:55,601 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2026-04-09T21:15:55,601 creating build/lib/galaxy/tools/bundled/data_export 2026-04-09T21:15:55,601 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2026-04-09T21:15:55,602 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2026-04-09T21:15:55,602 creating build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,603 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,603 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,604 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,604 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,605 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,605 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,605 copying galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,606 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,606 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,607 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,607 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,608 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,608 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,609 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,609 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,610 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,610 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,611 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,611 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,612 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,612 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,613 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,613 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,614 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,615 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,615 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,616 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,616 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,617 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,617 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,617 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,618 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,618 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,619 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,619 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,619 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,620 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,620 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,621 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T21:15:55,621 creating build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T21:15:55,622 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T21:15:55,622 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T21:15:55,623 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T21:15:55,623 creating build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,624 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,624 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,625 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,625 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,626 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2026-04-09T21:15:55,626 creating build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,627 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,627 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,627 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,628 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,628 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,629 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,629 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,630 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,631 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,631 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,631 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,632 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,632 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,633 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,633 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,633 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,634 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,634 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,635 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,635 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,636 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,636 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,638 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,640 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,643 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,645 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,647 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,650 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,652 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,654 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,657 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,660 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,662 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,664 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,666 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,669 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,671 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,674 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,676 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,678 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,680 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,683 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,685 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,687 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,689 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,692 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,694 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,696 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,698 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,700 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,702 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,705 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,708 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,710 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,712 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,714 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,717 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,719 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,722 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,724 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,726 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,729 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,731 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,733 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,736 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,738 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,740 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,742 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T21:15:55,744 creating build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,745 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,747 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,749 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,751 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,754 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,756 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,759 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,761 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,763 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:55,765 creating build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,766 copying galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,768 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,770 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,773 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,775 copying galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,777 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,779 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,782 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,785 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,787 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,789 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,791 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,794 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,796 copying galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,799 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,801 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,804 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,807 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,810 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,813 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,815 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,818 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,821 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,823 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,825 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,828 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,830 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,832 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,834 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,837 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,839 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,842 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,844 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,846 copying galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,849 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,851 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,854 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,856 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,858 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,860 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T21:15:55,863 creating build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,864 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,866 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,869 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,871 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,874 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,876 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,879 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,881 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,883 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,886 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,888 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,890 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,893 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,895 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,898 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,900 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,902 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,904 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,906 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,909 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,911 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,914 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,916 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,919 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,921 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,923 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,926 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,928 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,931 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,933 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,936 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,938 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,941 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,943 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T21:15:55,946 creating build/lib/galaxy/tools/bundled/meme 2026-04-09T21:15:55,947 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2026-04-09T21:15:55,951 creating build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,952 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,954 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,956 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,958 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,961 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,964 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,967 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:55,970 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,971 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,974 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,976 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,978 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,981 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,983 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,986 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,988 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,991 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:55,993 creating build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:55,994 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:55,996 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:55,999 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:56,001 creating build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,002 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,005 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,007 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,009 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,012 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,015 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,017 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,019 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,021 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,024 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,027 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,029 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,031 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,034 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,036 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,039 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,041 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,044 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,046 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,048 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,051 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,053 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,055 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,058 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,060 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:56,063 creating build/lib/galaxy/tools/bundled/plotting 2026-04-09T21:15:56,064 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T21:15:56,067 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T21:15:56,069 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T21:15:56,071 creating build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,072 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,074 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,077 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,080 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,082 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,084 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,086 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,088 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:56,091 creating build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,092 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,094 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,096 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,099 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,101 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:56,103 creating build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,104 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,107 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,109 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,112 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,115 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,118 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,120 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,123 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:56,125 creating build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,126 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,128 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,131 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,133 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,136 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,138 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,141 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,143 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,146 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,148 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,151 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2026-04-09T21:15:56,153 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2026-04-09T21:15:56,156 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2026-04-09T21:15:56,158 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2026-04-09T21:15:56,160 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:56,162 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:56,164 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T21:15:56,167 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:56,169 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:56,171 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:56,210 installing to build/bdist.linux-armv7l/wheel 2026-04-09T21:15:56,211 running install 2026-04-09T21:15:56,234 running install_lib 2026-04-09T21:15:56,239 creating build/bdist.linux-armv7l/wheel 2026-04-09T21:15:56,242 creating build/bdist.linux-armv7l/wheel/galaxy 2026-04-09T21:15:56,243 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,246 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,251 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2026-04-09T21:15:56,252 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2026-04-09T21:15:56,253 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,256 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,258 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,260 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,262 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,264 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T21:15:56,266 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-04-09T21:15:56,269 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2026-04-09T21:15:56,270 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T21:15:56,273 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T21:15:56,276 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T21:15:56,278 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,279 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,281 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,283 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,285 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,289 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T21:15:56,291 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T21:15:56,294 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T21:15:56,297 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-04-09T21:15:56,298 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,302 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2026-04-09T21:15:56,303 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-04-09T21:15:56,306 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-04-09T21:15:56,308 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2026-04-09T21:15:56,309 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T21:15:56,311 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T21:15:56,313 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T21:15:56,315 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T21:15:56,319 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2026-04-09T21:15:56,320 copying build/lib/galaxy/dependencies/conditional-constraints.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,322 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,324 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,326 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,327 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,330 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,331 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,333 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,335 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,338 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,340 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,342 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T21:15:56,344 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,346 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,350 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2026-04-09T21:15:56,351 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,353 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,356 copying build/lib/galaxy/managers/headers_encryption.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,359 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,361 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,364 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,367 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,369 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,372 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,375 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,377 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,379 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,382 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,386 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,388 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,391 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,393 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,395 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,398 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,400 copying build/lib/galaxy/managers/agents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,402 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,404 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,408 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,410 copying build/lib/galaxy/managers/tours.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,413 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,415 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,416 copying build/lib/galaxy/managers/credentials.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,418 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,420 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,423 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,425 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,427 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,429 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,432 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,436 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,438 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,441 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,442 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,446 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,448 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,452 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,458 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,460 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,463 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,465 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,467 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,469 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,472 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,474 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,476 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,479 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,481 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,483 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,485 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,488 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,489 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,491 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,494 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,495 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,497 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,500 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,503 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,505 copying build/lib/galaxy/managers/workflow_completion.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,507 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,510 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,513 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,516 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T21:15:56,518 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2026-04-09T21:15:56,520 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2026-04-09T21:15:56,521 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,524 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,527 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,530 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,532 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,535 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,537 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,538 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,541 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,543 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,545 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T21:15:56,548 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,549 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,552 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,554 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,557 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:56,559 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:56,561 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-04-09T21:15:56,563 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,567 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:56,568 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:56,571 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:56,574 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T21:15:56,576 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T21:15:56,578 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:56,579 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:56,582 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T21:15:56,585 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2026-04-09T21:15:56,586 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-04-09T21:15:56,589 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-04-09T21:15:56,591 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T21:15:56,593 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T21:15:56,596 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2026-04-09T21:15:56,597 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T21:15:56,599 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T21:15:56,602 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T21:15:56,604 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T21:15:56,606 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2026-04-09T21:15:56,607 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2026-04-09T21:15:56,610 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2026-04-09T21:15:56,611 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-04-09T21:15:56,614 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-04-09T21:15:56,616 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2026-04-09T21:15:56,618 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-04-09T21:15:56,621 creating build/bdist.linux-armv7l/wheel/galaxy/agents 2026-04-09T21:15:56,622 copying build/lib/galaxy/agents/custom_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,624 copying build/lib/galaxy/agents/orchestrator.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,627 copying build/lib/galaxy/agents/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,629 copying build/lib/galaxy/agents/router.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,631 copying build/lib/galaxy/agents/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,634 copying build/lib/galaxy/agents/error_analysis.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,637 copying build/lib/galaxy/agents/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,640 copying build/lib/galaxy/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T21:15:56,641 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,643 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,645 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2026-04-09T21:15:56,646 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,649 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,652 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2026-04-09T21:15:56,653 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2026-04-09T21:15:56,654 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-04-09T21:15:56,656 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-04-09T21:15:56,658 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2026-04-09T21:15:56,660 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,662 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/completion_hooks 2026-04-09T21:15:56,663 copying build/lib/galaxy/workflow/completion_hooks/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T21:15:56,666 copying build/lib/galaxy/workflow/completion_hooks/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T21:15:56,667 copying build/lib/galaxy/workflow/completion_hooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T21:15:56,669 copying build/lib/galaxy/workflow/completion_hooks/export.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T21:15:56,672 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,675 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2026-04-09T21:15:56,676 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-04-09T21:15:56,678 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-04-09T21:15:56,680 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,683 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,685 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,687 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,689 copying build/lib/galaxy/workflow/completion_monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,691 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,694 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2026-04-09T21:15:56,695 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-04-09T21:15:56,697 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-04-09T21:15:56,699 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2026-04-09T21:15:56,700 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T21:15:56,703 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T21:15:56,705 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T21:15:56,707 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,708 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T21:15:56,713 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:56,715 creating build/bdist.linux-armv7l/wheel/galaxy/work 2026-04-09T21:15:56,716 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-04-09T21:15:56,719 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-04-09T21:15:56,721 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2026-04-09T21:15:56,722 copying build/lib/galaxy/tools/nest_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,725 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,727 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,729 copying build/lib/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,731 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,733 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2026-04-09T21:15:56,734 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,737 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,740 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,742 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,745 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,747 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,749 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,752 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T21:15:56,755 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2026-04-09T21:15:56,756 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2026-04-09T21:15:56,758 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2026-04-09T21:15:56,760 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2026-04-09T21:15:56,761 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2026-04-09T21:15:56,762 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-04-09T21:15:56,764 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-04-09T21:15:56,767 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,769 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2026-04-09T21:15:56,770 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-04-09T21:15:56,773 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-04-09T21:15:56,774 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,776 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,778 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,780 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,783 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,785 copying build/lib/galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,788 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,791 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,793 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,797 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2026-04-09T21:15:56,798 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2026-04-09T21:15:56,802 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2026-04-09T21:15:56,803 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-04-09T21:15:56,806 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-04-09T21:15:56,809 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,812 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,814 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,817 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,819 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,822 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2026-04-09T21:15:56,824 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2026-04-09T21:15:56,827 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,829 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,833 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2026-04-09T21:15:56,834 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T21:15:56,836 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T21:15:56,839 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T21:15:56,841 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T21:15:56,843 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T21:15:56,845 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,849 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,851 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,855 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,858 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,860 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,864 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,867 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2026-04-09T21:15:56,868 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,871 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,875 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,877 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,881 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,884 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,887 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,889 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,891 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,894 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,898 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,900 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,902 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,905 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,907 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T21:15:56,909 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,912 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,914 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,916 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,918 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,920 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,922 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2026-04-09T21:15:56,923 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,925 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,927 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,928 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,930 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,932 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T21:15:56,934 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,936 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,938 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,940 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:56,943 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2026-04-09T21:15:56,945 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2026-04-09T21:15:56,946 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,948 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,950 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,953 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,955 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,956 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,958 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,960 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,962 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,964 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,966 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,968 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,970 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,972 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,974 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,976 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,977 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,979 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,981 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,984 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,985 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,987 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,989 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,991 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,993 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T21:15:56,994 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,996 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:56,998 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,000 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,002 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,004 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,007 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,009 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,011 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,013 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,014 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,016 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,018 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,020 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,022 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,025 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,026 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,028 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,030 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,032 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,034 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,036 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,038 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,040 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,042 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,044 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,045 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,047 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,049 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,051 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,053 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,056 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,057 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,060 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,062 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,064 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,066 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,067 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,070 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,072 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,074 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,076 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,077 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,079 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,081 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,083 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,085 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,086 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,088 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,090 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,092 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,093 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,095 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T21:15:57,098 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,099 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,101 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,104 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,106 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,108 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,111 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,113 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,114 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T21:15:57,117 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2026-04-09T21:15:57,118 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T21:15:57,121 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T21:15:57,123 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T21:15:57,125 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T21:15:57,127 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T21:15:57,130 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,131 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,133 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,135 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,137 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,139 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,141 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,142 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,144 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,146 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T21:15:57,149 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2026-04-09T21:15:57,150 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,152 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,155 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,157 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,160 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,162 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,164 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,167 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,169 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,171 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,173 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T21:15:57,175 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2026-04-09T21:15:57,176 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T21:15:57,178 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T21:15:57,180 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T21:15:57,183 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:57,184 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:57,186 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:57,188 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T21:15:57,190 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2026-04-09T21:15:57,191 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T21:15:57,194 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T21:15:57,196 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T21:15:57,198 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2026-04-09T21:15:57,200 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2026-04-09T21:15:57,203 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,204 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,206 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,209 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,211 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,212 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T21:15:57,215 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2026-04-09T21:15:57,216 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,218 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,220 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,222 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,224 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,226 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,228 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,230 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,232 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,234 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,236 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,238 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,240 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,241 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,243 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,245 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,247 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,249 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,251 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,252 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,254 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,256 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,258 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,260 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,262 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,263 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,265 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,267 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,269 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,271 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,273 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,275 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,277 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,279 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,281 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,283 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,284 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,286 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,288 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T21:15:57,291 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,292 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,293 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,296 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,297 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,299 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,301 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,304 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,305 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T21:15:57,307 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2026-04-09T21:15:57,308 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-04-09T21:15:57,311 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-04-09T21:15:57,313 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,314 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,316 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,319 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,321 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,323 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,325 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,327 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T21:15:57,330 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,331 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,333 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,335 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,337 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,339 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,341 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,343 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,345 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,347 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,349 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,351 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,353 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,355 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,357 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,359 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,361 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,363 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,365 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,367 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,369 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,372 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,373 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,375 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,378 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,380 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T21:15:57,382 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2026-04-09T21:15:57,384 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2026-04-09T21:15:57,385 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,387 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,389 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,391 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,393 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,395 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,397 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,399 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,401 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,404 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,405 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,407 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,410 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,412 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,414 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,416 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,418 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,420 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,422 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,425 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,426 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,429 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,431 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,433 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,435 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,437 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,439 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,442 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,444 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,446 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,448 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,450 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,452 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,454 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,456 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,458 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,460 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,462 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,464 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,466 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T21:15:57,469 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2026-04-09T21:15:57,471 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,473 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,475 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,476 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,479 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,480 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,482 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,484 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,486 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,488 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,490 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,492 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,494 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,497 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,499 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,500 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,503 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,505 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,507 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,509 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,511 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,513 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,515 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,517 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,519 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,521 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,523 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,525 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,527 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,530 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,532 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,534 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,535 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,538 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T21:15:57,540 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,545 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,548 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2026-04-09T21:15:57,550 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,551 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,553 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,555 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,557 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,559 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,561 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,563 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,565 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,567 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T21:15:57,569 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2026-04-09T21:15:57,571 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,573 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,575 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,577 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,579 copying build/lib/galaxy/tools/convert_sample_sheet.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,581 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,583 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T21:15:57,586 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2026-04-09T21:15:57,587 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T21:15:57,590 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T21:15:57,592 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T21:15:57,594 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T21:15:57,596 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2026-04-09T21:15:57,597 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,601 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,602 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,605 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,607 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,611 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2026-04-09T21:15:57,612 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T21:15:57,614 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T21:15:57,616 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T21:15:57,618 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2026-04-09T21:15:57,619 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,621 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,624 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2026-04-09T21:15:57,625 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,628 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2026-04-09T21:15:57,629 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:57,630 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:57,633 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:57,634 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T21:15:57,636 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-04-09T21:15:57,638 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,640 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,642 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,643 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,645 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,647 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,650 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T21:15:57,651 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-04-09T21:15:57,654 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2026-04-09T21:15:57,655 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2026-04-09T21:15:57,657 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:57,658 copying build/lib/galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:57,661 copying build/lib/galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-04-09T21:15:57,662 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,664 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,666 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,667 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,669 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,672 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2026-04-09T21:15:57,673 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T21:15:57,675 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T21:15:57,676 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T21:15:57,678 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T21:15:57,680 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,682 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T21:15:57,684 copying build/lib/galaxy/jobs/runners/gcp_batch.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,687 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,689 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,693 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2026-04-09T21:15:57,694 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T21:15:57,696 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T21:15:57,698 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T21:15:57,700 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,702 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,705 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,708 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,711 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,714 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,716 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,719 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,721 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,724 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,726 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T21:15:57,728 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,731 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2026-04-09T21:15:57,732 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2026-04-09T21:15:57,733 copying build/lib/galaxy/jobs/job_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,735 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,737 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T21:15:57,742 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2026-04-09T21:15:57,743 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-04-09T21:15:57,746 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:57,748 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2026-04-09T21:15:57,749 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-04-09T21:15:57,752 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-04-09T21:15:57,753 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T21:15:57,756 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2026-04-09T21:15:57,757 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,760 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,762 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,764 copying build/lib/galaxy/authnz/keycloak.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,765 copying build/lib/galaxy/authnz/cilogon.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,767 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,770 copying build/lib/galaxy/authnz/oidc_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,772 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,774 copying build/lib/galaxy/authnz/oidc.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T21:15:57,776 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2026-04-09T21:15:57,778 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2026-04-09T21:15:57,779 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-04-09T21:15:57,780 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-04-09T21:15:57,783 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2026-04-09T21:15:57,784 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-04-09T21:15:57,786 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-04-09T21:15:57,787 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-04-09T21:15:57,790 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2026-04-09T21:15:57,790 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-04-09T21:15:57,792 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-04-09T21:15:57,794 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-04-09T21:15:57,796 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2026-04-09T21:15:57,797 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T21:15:57,798 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T21:15:57,801 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2026-04-09T21:15:57,802 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T21:15:57,804 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T21:15:57,806 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T21:15:57,808 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T21:15:57,809 running install_egg_info 2026-04-09T21:15:57,814 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-26.0.1.dev0-py3.11.egg-info 2026-04-09T21:15:57,827 running install_scripts 2026-04-09T21:15:57,842 creating build/bdist.linux-armv7l/wheel/galaxy_app-26.0.1.dev0.dist-info/WHEEL 2026-04-09T21:15:57,844 creating '/tmp/pip-wheel-zefh93zg/.tmp-ce5t6n3z/galaxy_app-26.0.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-09T21:15:57,847 adding 'galaxy/__init__.py' 2026-04-09T21:15:57,853 adding 'galaxy/app.py' 2026-04-09T21:15:57,855 adding 'galaxy/config_watchers.py' 2026-04-09T21:15:57,857 adding 'galaxy/di.py' 2026-04-09T21:15:57,859 adding 'galaxy/main.py' 2026-04-09T21:15:57,860 adding 'galaxy/main_config.py' 2026-04-09T21:15:57,862 adding 'galaxy/py.typed' 2026-04-09T21:15:57,864 adding 'galaxy/queue_worker.py' 2026-04-09T21:15:57,866 adding 'galaxy/queues.py' 2026-04-09T21:15:57,867 adding 'galaxy/structured_app.py' 2026-04-09T21:15:57,869 adding 'galaxy/actions/__init__.py' 2026-04-09T21:15:57,872 adding 'galaxy/actions/library.py' 2026-04-09T21:15:57,874 adding 'galaxy/agents/__init__.py' 2026-04-09T21:15:57,878 adding 'galaxy/agents/base.py' 2026-04-09T21:15:57,880 adding 'galaxy/agents/custom_tool.py' 2026-04-09T21:15:57,882 adding 'galaxy/agents/error_analysis.py' 2026-04-09T21:15:57,884 adding 'galaxy/agents/orchestrator.py' 2026-04-09T21:15:57,885 adding 'galaxy/agents/registry.py' 2026-04-09T21:15:57,888 adding 'galaxy/agents/router.py' 2026-04-09T21:15:57,891 adding 'galaxy/agents/tools.py' 2026-04-09T21:15:57,893 adding 'galaxy/app_unittest_utils/__init__.py' 2026-04-09T21:15:57,895 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2026-04-09T21:15:57,897 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2026-04-09T21:15:57,899 adding 'galaxy/app_unittest_utils/tools_support.py' 2026-04-09T21:15:57,901 adding 'galaxy/authnz/__init__.py' 2026-04-09T21:15:57,902 adding 'galaxy/authnz/cilogon.py' 2026-04-09T21:15:57,903 adding 'galaxy/authnz/keycloak.py' 2026-04-09T21:15:57,906 adding 'galaxy/authnz/managers.py' 2026-04-09T21:15:57,907 adding 'galaxy/authnz/oidc.py' 2026-04-09T21:15:57,909 adding 'galaxy/authnz/oidc_utils.py' 2026-04-09T21:15:57,914 adding 'galaxy/authnz/psa_authnz.py' 2026-04-09T21:15:57,916 adding 'galaxy/authnz/tapis.py' 2026-04-09T21:15:57,917 adding 'galaxy/authnz/util.py' 2026-04-09T21:15:57,919 adding 'galaxy/carbon_emissions/__init__.py' 2026-04-09T21:15:57,921 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2026-04-09T21:15:57,924 adding 'galaxy/celery/__init__.py' 2026-04-09T21:15:57,925 adding 'galaxy/celery/_serialization.py' 2026-04-09T21:15:57,926 adding 'galaxy/celery/base_task.py' 2026-04-09T21:15:57,929 adding 'galaxy/celery/tasks.py' 2026-04-09T21:15:57,932 adding 'galaxy/dependencies/__init__.py' 2026-04-09T21:15:57,933 adding 'galaxy/dependencies/conditional-constraints.txt' 2026-04-09T21:15:57,950 adding 'galaxy/dependencies/conditional-requirements.txt' 2026-04-09T21:15:57,952 adding 'galaxy/dependencies/dev-requirements.txt' 2026-04-09T21:15:57,953 adding 'galaxy/dependencies/lint-requirements.txt' 2026-04-09T21:15:57,954 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2026-04-09T21:15:57,956 adding 'galaxy/dependencies/pinned-requirements.txt' 2026-04-09T21:15:57,957 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2026-04-09T21:15:57,972 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2026-04-09T21:15:57,978 adding 'galaxy/dependencies/script.py' 2026-04-09T21:15:57,980 adding 'galaxy/dependencies/update.sh' 2026-04-09T21:15:57,981 adding 'galaxy/dependencies/update_lint_requirements.sh' 2026-04-09T21:15:57,982 adding 'galaxy/forms/__init__.py' 2026-04-09T21:15:57,984 adding 'galaxy/forms/forms.py' 2026-04-09T21:15:58,001 adding 'galaxy/jobs/__init__.py' 2026-04-09T21:15:58,004 adding 'galaxy/jobs/command_factory.py' 2026-04-09T21:15:58,012 adding 'galaxy/jobs/dynamic_tool_destination.py' 2026-04-09T21:15:58,019 adding 'galaxy/jobs/handler.py' 2026-04-09T21:15:58,021 adding 'galaxy/jobs/job_destination.py' 2026-04-09T21:15:58,022 adding 'galaxy/jobs/manager.py' 2026-04-09T21:15:58,024 adding 'galaxy/jobs/mapper.py' 2026-04-09T21:15:58,026 adding 'galaxy/jobs/rule_helper.py' 2026-04-09T21:15:58,027 adding 'galaxy/jobs/stock_rules.py' 2026-04-09T21:15:58,029 adding 'galaxy/jobs/rules/__init__.py' 2026-04-09T21:15:58,034 adding 'galaxy/jobs/runners/__init__.py' 2026-04-09T21:15:58,038 adding 'galaxy/jobs/runners/aws.py' 2026-04-09T21:15:58,040 adding 'galaxy/jobs/runners/chronos.py' 2026-04-09T21:15:58,042 adding 'galaxy/jobs/runners/cli.py' 2026-04-09T21:15:58,044 adding 'galaxy/jobs/runners/condor.py' 2026-04-09T21:15:58,047 adding 'galaxy/jobs/runners/drmaa.py' 2026-04-09T21:15:58,051 adding 'galaxy/jobs/runners/gcp_batch.py' 2026-04-09T21:15:58,053 adding 'galaxy/jobs/runners/godocker.py' 2026-04-09T21:15:58,059 adding 'galaxy/jobs/runners/kubernetes.py' 2026-04-09T21:15:58,062 adding 'galaxy/jobs/runners/local.py' 2026-04-09T21:15:58,065 adding 'galaxy/jobs/runners/pbs.py' 2026-04-09T21:15:58,072 adding 'galaxy/jobs/runners/pulsar.py' 2026-04-09T21:15:58,074 adding 'galaxy/jobs/runners/slurm.py' 2026-04-09T21:15:58,075 adding 'galaxy/jobs/runners/state_handler_factory.py' 2026-04-09T21:15:58,077 adding 'galaxy/jobs/runners/tasks.py' 2026-04-09T21:15:58,081 adding 'galaxy/jobs/runners/univa.py' 2026-04-09T21:15:58,083 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2026-04-09T21:15:58,085 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2026-04-09T21:15:58,087 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2026-04-09T21:15:58,089 adding 'galaxy/jobs/runners/util/__init__.py' 2026-04-09T21:15:58,090 adding 'galaxy/jobs/runners/util/env.py' 2026-04-09T21:15:58,091 adding 'galaxy/jobs/runners/util/external.py' 2026-04-09T21:15:58,092 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2026-04-09T21:15:58,094 adding 'galaxy/jobs/runners/util/kill.py' 2026-04-09T21:15:58,095 adding 'galaxy/jobs/runners/util/process_groups.py' 2026-04-09T21:15:58,097 adding 'galaxy/jobs/runners/util/pykube_util.py' 2026-04-09T21:15:58,099 adding 'galaxy/jobs/runners/util/sudo.py' 2026-04-09T21:15:58,101 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2026-04-09T21:15:58,102 adding 'galaxy/jobs/runners/util/cli/factory.py' 2026-04-09T21:15:58,104 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2026-04-09T21:15:58,105 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2026-04-09T21:15:58,106 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2026-04-09T21:15:58,108 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2026-04-09T21:15:58,109 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2026-04-09T21:15:58,111 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2026-04-09T21:15:58,113 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2026-04-09T21:15:58,114 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2026-04-09T21:15:58,116 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2026-04-09T21:15:58,119 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2026-04-09T21:15:58,121 adding 'galaxy/jobs/runners/util/gcp_batch/__init__.py' 2026-04-09T21:15:58,123 adding 'galaxy/jobs/runners/util/gcp_batch/helpers.py' 2026-04-09T21:15:58,125 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2026-04-09T21:15:58,127 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2026-04-09T21:15:58,128 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2026-04-09T21:15:58,129 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2026-04-09T21:15:58,132 adding 'galaxy/jobs/splitters/__init__.py' 2026-04-09T21:15:58,133 adding 'galaxy/jobs/splitters/basic.py' 2026-04-09T21:15:58,135 adding 'galaxy/jobs/splitters/multi.py' 2026-04-09T21:15:58,138 adding 'galaxy/managers/__init__.py' 2026-04-09T21:15:58,140 adding 'galaxy/managers/_config_templates.py' 2026-04-09T21:15:58,142 adding 'galaxy/managers/agents.py' 2026-04-09T21:15:58,144 adding 'galaxy/managers/annotatable.py' 2026-04-09T21:15:58,145 adding 'galaxy/managers/api_keys.py' 2026-04-09T21:15:58,153 adding 'galaxy/managers/base.py' 2026-04-09T21:15:58,155 adding 'galaxy/managers/chat.py' 2026-04-09T21:15:58,157 adding 'galaxy/managers/citations.py' 2026-04-09T21:15:58,162 adding 'galaxy/managers/collections.py' 2026-04-09T21:15:58,164 adding 'galaxy/managers/collections_util.py' 2026-04-09T21:15:58,166 adding 'galaxy/managers/configuration.py' 2026-04-09T21:15:58,169 adding 'galaxy/managers/context.py' 2026-04-09T21:15:58,171 adding 'galaxy/managers/credentials.py' 2026-04-09T21:15:58,176 adding 'galaxy/managers/datasets.py' 2026-04-09T21:15:58,178 adding 'galaxy/managers/datatypes.py' 2026-04-09T21:15:58,180 adding 'galaxy/managers/dbkeys.py' 2026-04-09T21:15:58,181 adding 'galaxy/managers/deletable.py' 2026-04-09T21:15:58,183 adding 'galaxy/managers/display_applications.py' 2026-04-09T21:15:58,184 adding 'galaxy/managers/executables.py' 2026-04-09T21:15:58,186 adding 'galaxy/managers/export_tracker.py' 2026-04-09T21:15:58,189 adding 'galaxy/managers/file_source_instances.py' 2026-04-09T21:15:58,192 adding 'galaxy/managers/folders.py' 2026-04-09T21:15:58,194 adding 'galaxy/managers/forms.py' 2026-04-09T21:15:58,195 adding 'galaxy/managers/genomes.py' 2026-04-09T21:15:58,197 adding 'galaxy/managers/group_roles.py' 2026-04-09T21:15:58,198 adding 'galaxy/managers/group_users.py' 2026-04-09T21:15:58,200 adding 'galaxy/managers/groups.py' 2026-04-09T21:15:58,203 adding 'galaxy/managers/hdas.py' 2026-04-09T21:15:58,205 adding 'galaxy/managers/hdcas.py' 2026-04-09T21:15:58,207 adding 'galaxy/managers/headers_encryption.py' 2026-04-09T21:15:58,212 adding 'galaxy/managers/histories.py' 2026-04-09T21:15:58,216 adding 'galaxy/managers/history_contents.py' 2026-04-09T21:15:58,219 adding 'galaxy/managers/interactivetool.py' 2026-04-09T21:15:58,220 adding 'galaxy/managers/item_tags.py' 2026-04-09T21:15:58,222 adding 'galaxy/managers/job_connections.py' 2026-04-09T21:15:58,232 adding 'galaxy/managers/jobs.py' 2026-04-09T21:15:58,235 adding 'galaxy/managers/landing.py' 2026-04-09T21:15:58,237 adding 'galaxy/managers/lddas.py' 2026-04-09T21:15:58,239 adding 'galaxy/managers/libraries.py' 2026-04-09T21:15:58,241 adding 'galaxy/managers/library_datasets.py' 2026-04-09T21:15:58,252 adding 'galaxy/managers/licenses.json' 2026-04-09T21:15:58,256 adding 'galaxy/managers/licenses.py' 2026-04-09T21:15:58,257 adding 'galaxy/managers/markdown_export_base.css' 2026-04-09T21:15:58,259 adding 'galaxy/managers/markdown_parse.py' 2026-04-09T21:15:58,265 adding 'galaxy/managers/markdown_util.py' 2026-04-09T21:15:58,268 adding 'galaxy/managers/model_stores.py' 2026-04-09T21:15:58,272 adding 'galaxy/managers/notification.py' 2026-04-09T21:15:58,275 adding 'galaxy/managers/object_store_instances.py' 2026-04-09T21:15:58,279 adding 'galaxy/managers/pages.py' 2026-04-09T21:15:58,282 adding 'galaxy/managers/quotas.py' 2026-04-09T21:15:58,284 adding 'galaxy/managers/ratable.py' 2026-04-09T21:15:58,286 adding 'galaxy/managers/rbac_secured.py' 2026-04-09T21:15:58,288 adding 'galaxy/managers/remote_files.py' 2026-04-09T21:15:58,290 adding 'galaxy/managers/roles.py' 2026-04-09T21:15:58,292 adding 'galaxy/managers/secured.py' 2026-04-09T21:15:58,293 adding 'galaxy/managers/session.py' 2026-04-09T21:15:58,297 adding 'galaxy/managers/sharable.py' 2026-04-09T21:15:58,299 adding 'galaxy/managers/taggable.py' 2026-04-09T21:15:58,301 adding 'galaxy/managers/tags.py' 2026-04-09T21:15:58,302 adding 'galaxy/managers/tasks.py' 2026-04-09T21:15:58,304 adding 'galaxy/managers/tool_data.py' 2026-04-09T21:15:58,306 adding 'galaxy/managers/tools.py' 2026-04-09T21:15:58,309 adding 'galaxy/managers/tours.py' 2026-04-09T21:15:58,314 adding 'galaxy/managers/users.py' 2026-04-09T21:15:58,316 adding 'galaxy/managers/visualizations.py' 2026-04-09T21:15:58,318 adding 'galaxy/managers/workflow_completion.py' 2026-04-09T21:15:58,331 adding 'galaxy/managers/workflows.py' 2026-04-09T21:15:58,334 adding 'galaxy/short_term_storage/__init__.py' 2026-04-09T21:15:58,337 adding 'galaxy/tool_shed/__init__.py' 2026-04-09T21:15:58,338 adding 'galaxy/tool_shed/cache.py' 2026-04-09T21:15:58,340 adding 'galaxy/tool_shed/repository_type.py' 2026-04-09T21:15:58,342 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2026-04-09T21:15:58,344 adding 'galaxy/tool_shed/galaxy_install/client.py' 2026-04-09T21:15:58,349 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2026-04-09T21:15:58,354 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2026-04-09T21:15:58,357 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2026-04-09T21:15:58,359 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2026-04-09T21:15:58,361 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2026-04-09T21:15:58,365 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2026-04-09T21:15:58,369 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2026-04-09T21:15:58,372 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2026-04-09T21:15:58,374 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2026-04-09T21:15:58,378 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2026-04-09T21:15:58,380 adding 'galaxy/tool_shed/metadata/__init__.py' 2026-04-09T21:15:58,386 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2026-04-09T21:15:58,389 adding 'galaxy/tool_shed/tools/__init__.py' 2026-04-09T21:15:58,391 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2026-04-09T21:15:58,393 adding 'galaxy/tool_shed/tools/tool_validator.py' 2026-04-09T21:15:58,395 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2026-04-09T21:15:58,397 adding 'galaxy/tool_shed/util/__init__.py' 2026-04-09T21:15:58,399 adding 'galaxy/tool_shed/util/basic_util.py' 2026-04-09T21:15:58,401 adding 'galaxy/tool_shed/util/container_util.py' 2026-04-09T21:15:58,404 adding 'galaxy/tool_shed/util/dependency_display.py' 2026-04-09T21:15:58,406 adding 'galaxy/tool_shed/util/hg_util.py' 2026-04-09T21:15:58,408 adding 'galaxy/tool_shed/util/metadata_util.py' 2026-04-09T21:15:58,412 adding 'galaxy/tool_shed/util/repository_util.py' 2026-04-09T21:15:58,414 adding 'galaxy/tool_shed/util/shed_util_common.py' 2026-04-09T21:15:58,416 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2026-04-09T21:15:58,418 adding 'galaxy/tool_shed/util/tool_util.py' 2026-04-09T21:15:58,422 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2026-04-09T21:15:58,449 adding 'galaxy/tools/__init__.py' 2026-04-09T21:15:58,452 adding 'galaxy/tools/_types.py' 2026-04-09T21:15:58,453 adding 'galaxy/tools/apply_rules.xml' 2026-04-09T21:15:58,454 adding 'galaxy/tools/biotools.py' 2026-04-09T21:15:58,456 adding 'galaxy/tools/build_list.xml' 2026-04-09T21:15:58,457 adding 'galaxy/tools/build_list_1.2.0.xml' 2026-04-09T21:15:58,459 adding 'galaxy/tools/cache.py' 2026-04-09T21:15:58,460 adding 'galaxy/tools/convert_sample_sheet.xml' 2026-04-09T21:15:58,462 adding 'galaxy/tools/cross_product_flat.xml' 2026-04-09T21:15:58,463 adding 'galaxy/tools/cross_product_nested.xml' 2026-04-09T21:15:58,467 adding 'galaxy/tools/data_fetch.py' 2026-04-09T21:15:58,468 adding 'galaxy/tools/data_fetch.xml' 2026-04-09T21:15:58,470 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2026-04-09T21:15:58,471 adding 'galaxy/tools/errors.py' 2026-04-09T21:15:58,477 adding 'galaxy/tools/evaluation.py' 2026-04-09T21:15:58,479 adding 'galaxy/tools/exception_handling.py' 2026-04-09T21:15:58,483 adding 'galaxy/tools/execute.py' 2026-04-09T21:15:58,485 adding 'galaxy/tools/execution_helpers.py' 2026-04-09T21:15:58,486 adding 'galaxy/tools/extract_dataset.xml' 2026-04-09T21:15:58,488 adding 'galaxy/tools/filter_empty_collection.xml' 2026-04-09T21:15:58,489 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2026-04-09T21:15:58,490 adding 'galaxy/tools/filter_failed_collection.xml' 2026-04-09T21:15:58,492 adding 'galaxy/tools/filter_failed_collection_1.1.0.xml' 2026-04-09T21:15:58,493 adding 'galaxy/tools/filter_from_file.xml' 2026-04-09T21:15:58,495 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2026-04-09T21:15:58,496 adding 'galaxy/tools/filter_null.xml' 2026-04-09T21:15:58,498 adding 'galaxy/tools/filter_null_1.1.0.xml' 2026-04-09T21:15:58,499 adding 'galaxy/tools/flatten_collection.xml' 2026-04-09T21:15:58,501 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2026-04-09T21:15:58,503 adding 'galaxy/tools/harmonize_two_collections_list_1.0.0.xml' 2026-04-09T21:15:58,504 adding 'galaxy/tools/keep_success_collection.xml' 2026-04-09T21:15:58,506 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2026-04-09T21:15:58,508 adding 'galaxy/tools/merge_collection.xml' 2026-04-09T21:15:58,509 adding 'galaxy/tools/model_operation_macros.xml' 2026-04-09T21:15:58,511 adding 'galaxy/tools/nest_collection.xml' 2026-04-09T21:15:58,513 adding 'galaxy/tools/recommendations.py' 2026-04-09T21:15:58,515 adding 'galaxy/tools/relabel_from_file.xml' 2026-04-09T21:15:58,516 adding 'galaxy/tools/remote_tool_eval.py' 2026-04-09T21:15:58,518 adding 'galaxy/tools/repositories.py' 2026-04-09T21:15:58,519 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2026-04-09T21:15:58,521 adding 'galaxy/tools/sort_collection_list.xml' 2026-04-09T21:15:58,522 adding 'galaxy/tools/special_tools.py' 2026-04-09T21:15:58,523 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2026-04-09T21:15:58,525 adding 'galaxy/tools/stock.py' 2026-04-09T21:15:58,526 adding 'galaxy/tools/tag_collection_from_file.xml' 2026-04-09T21:15:58,528 adding 'galaxy/tools/unzip_collection.xml' 2026-04-09T21:15:58,531 adding 'galaxy/tools/wrappers.py' 2026-04-09T21:15:58,533 adding 'galaxy/tools/zip_collection.xml' 2026-04-09T21:15:58,542 adding 'galaxy/tools/actions/__init__.py' 2026-04-09T21:15:58,543 adding 'galaxy/tools/actions/data_manager.py' 2026-04-09T21:15:58,545 adding 'galaxy/tools/actions/data_source.py' 2026-04-09T21:15:58,546 adding 'galaxy/tools/actions/history_imp_exp.py' 2026-04-09T21:15:58,548 adding 'galaxy/tools/actions/metadata.py' 2026-04-09T21:15:58,550 adding 'galaxy/tools/actions/model_operations.py' 2026-04-09T21:15:58,552 adding 'galaxy/tools/actions/upload.py' 2026-04-09T21:15:58,554 adding 'galaxy/tools/actions/upload_common.py' 2026-04-09T21:15:58,557 adding 'galaxy/tools/bundled/__init__.py' 2026-04-09T21:15:58,559 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2026-04-09T21:15:58,560 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2026-04-09T21:15:58,562 adding 'galaxy/tools/bundled/data_source/__init__.py' 2026-04-09T21:15:58,563 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2026-04-09T21:15:58,565 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2026-04-09T21:15:58,566 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2026-04-09T21:15:58,568 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2026-04-09T21:15:58,569 adding 'galaxy/tools/bundled/data_source/data_source.py' 2026-04-09T21:15:58,570 adding 'galaxy/tools/bundled/data_source/diced.xml' 2026-04-09T21:15:58,572 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2026-04-09T21:15:58,573 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2026-04-09T21:15:58,574 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2026-04-09T21:15:58,575 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2026-04-09T21:15:58,577 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2026-04-09T21:15:58,578 adding 'galaxy/tools/bundled/data_source/genbank.py' 2026-04-09T21:15:58,579 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2026-04-09T21:15:58,581 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2026-04-09T21:15:58,582 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2026-04-09T21:15:58,583 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2026-04-09T21:15:58,585 adding 'galaxy/tools/bundled/data_source/import.py' 2026-04-09T21:15:58,586 adding 'galaxy/tools/bundled/data_source/import.xml' 2026-04-09T21:15:58,587 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2026-04-09T21:15:58,588 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2026-04-09T21:15:58,590 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2026-04-09T21:15:58,591 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2026-04-09T21:15:58,593 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2026-04-09T21:15:58,594 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2026-04-09T21:15:58,596 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2026-04-09T21:15:58,597 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2026-04-09T21:15:58,598 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2026-04-09T21:15:58,600 adding 'galaxy/tools/bundled/data_source/sra.xml' 2026-04-09T21:15:58,601 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2026-04-09T21:15:58,603 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2026-04-09T21:15:58,604 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2026-04-09T21:15:58,606 adding 'galaxy/tools/bundled/data_source/upload.py' 2026-04-09T21:15:58,608 adding 'galaxy/tools/bundled/data_source/upload.xml' 2026-04-09T21:15:58,610 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2026-04-09T21:15:58,611 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2026-04-09T21:15:58,612 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2026-04-09T21:15:58,614 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2026-04-09T21:15:58,615 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2026-04-09T21:15:58,617 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2026-04-09T21:15:58,618 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2026-04-09T21:15:58,620 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2026-04-09T21:15:58,623 adding 'galaxy/tools/bundled/extract/__init__.py' 2026-04-09T21:15:58,625 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2026-04-09T21:15:58,626 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2026-04-09T21:15:58,628 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2026-04-09T21:15:58,630 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2026-04-09T21:15:58,633 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2026-04-09T21:15:58,634 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2026-04-09T21:15:58,635 adding 'galaxy/tools/bundled/filters/__init__.py' 2026-04-09T21:15:58,637 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2026-04-09T21:15:58,638 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2026-04-09T21:15:58,640 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2026-04-09T21:15:58,641 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2026-04-09T21:15:58,643 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2026-04-09T21:15:58,644 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2026-04-09T21:15:58,645 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2026-04-09T21:15:58,647 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2026-04-09T21:15:58,648 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2026-04-09T21:15:58,650 adding 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'galaxy/tools/bundled/phenotype_association/lps.xml' 2026-04-09T21:15:58,921 adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh' 2026-04-09T21:15:58,923 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl' 2026-04-09T21:15:58,925 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml' 2026-04-09T21:15:58,926 adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl' 2026-04-09T21:15:58,928 adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml' 2026-04-09T21:15:58,929 adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl' 2026-04-09T21:15:58,931 adding 'galaxy/tools/bundled/phenotype_association/pagetag.py' 2026-04-09T21:15:58,932 adding 'galaxy/tools/bundled/phenotype_association/pass.xml' 2026-04-09T21:15:58,933 adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh' 2026-04-09T21:15:58,935 adding 'galaxy/tools/bundled/phenotype_association/senatag.py' 2026-04-09T21:15:58,937 adding 'galaxy/tools/bundled/phenotype_association/sift.xml' 2026-04-09T21:15:58,938 adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh' 2026-04-09T21:15:58,940 adding 'galaxy/tools/bundled/plotting/bar_chart.py' 2026-04-09T21:15:58,942 adding 'galaxy/tools/bundled/plotting/bar_chart.xml' 2026-04-09T21:15:58,943 adding 'galaxy/tools/bundled/plotting/boxplot.xml' 2026-04-09T21:15:58,945 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2026-04-09T21:15:58,947 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2026-04-09T21:15:58,949 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2026-04-09T21:15:58,950 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2026-04-09T21:15:58,951 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2026-04-09T21:15:58,953 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2026-04-09T21:15:58,954 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2026-04-09T21:15:58,956 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2026-04-09T21:15:58,957 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2026-04-09T21:15:58,960 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2026-04-09T21:15:58,961 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2026-04-09T21:15:58,963 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2026-04-09T21:15:58,964 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2026-04-09T21:15:58,967 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2026-04-09T21:15:58,969 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2026-04-09T21:15:58,971 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2026-04-09T21:15:58,974 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2026-04-09T21:15:58,976 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2026-04-09T21:15:58,977 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2026-04-09T21:15:58,981 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2026-04-09T21:15:58,983 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2026-04-09T21:15:58,985 adding 'galaxy/tools/bundled/stats/__init__.py' 2026-04-09T21:15:58,987 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2026-04-09T21:15:58,989 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2026-04-09T21:15:58,991 adding 'galaxy/tools/bundled/stats/filtering.py' 2026-04-09T21:15:58,993 adding 'galaxy/tools/bundled/stats/filtering.xml' 2026-04-09T21:15:58,995 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2026-04-09T21:15:58,997 adding 'galaxy/tools/bundled/stats/grouping.py' 2026-04-09T21:15:58,999 adding 'galaxy/tools/bundled/stats/grouping.xml' 2026-04-09T21:15:59,001 adding 'galaxy/tools/bundled/stats/gsummary.py' 2026-04-09T21:15:59,003 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2026-04-09T21:15:59,005 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2026-04-09T21:15:59,007 adding 'galaxy/tools/data/__init__.py' 2026-04-09T21:15:59,010 adding 'galaxy/tools/data_manager/__init__.py' 2026-04-09T21:15:59,012 adding 'galaxy/tools/data_manager/manager.py' 2026-04-09T21:15:59,014 adding 'galaxy/tools/error_reports/__init__.py' 2026-04-09T21:15:59,016 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2026-04-09T21:15:59,018 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2026-04-09T21:15:59,020 adding 'galaxy/tools/error_reports/plugins/email.py' 2026-04-09T21:15:59,022 adding 'galaxy/tools/error_reports/plugins/github.py' 2026-04-09T21:15:59,024 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2026-04-09T21:15:59,026 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2026-04-09T21:15:59,028 adding 'galaxy/tools/error_reports/plugins/json.py' 2026-04-09T21:15:59,030 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2026-04-09T21:15:59,031 adding 'galaxy/tools/error_reports/plugins/slack.py' 2026-04-09T21:15:59,034 adding 'galaxy/tools/expressions/__init__.py' 2026-04-09T21:15:59,035 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2026-04-09T21:15:59,037 adding 'galaxy/tools/expressions/evaluation.py' 2026-04-09T21:15:59,038 adding 'galaxy/tools/expressions/script.py' 2026-04-09T21:15:59,040 adding 'galaxy/tools/expressions/util.py' 2026-04-09T21:15:59,042 adding 'galaxy/tools/fetch/__init__.py' 2026-04-09T21:15:59,044 adding 'galaxy/tools/fetch/workbooks.py' 2026-04-09T21:15:59,046 adding 'galaxy/tools/filters/__init__.py' 2026-04-09T21:15:59,048 adding 'galaxy/tools/imp_exp/__init__.py' 2026-04-09T21:15:59,050 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2026-04-09T21:15:59,052 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2026-04-09T21:15:59,053 adding 'galaxy/tools/imp_exp/export_history.py' 2026-04-09T21:15:59,055 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2026-04-09T21:15:59,057 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2026-04-09T21:15:59,062 adding 'galaxy/tools/parameters/__init__.py' 2026-04-09T21:15:59,076 adding 'galaxy/tools/parameters/basic.py' 2026-04-09T21:15:59,078 adding 'galaxy/tools/parameters/cancelable_request.py' 2026-04-09T21:15:59,080 adding 'galaxy/tools/parameters/dataset_matcher.py' 2026-04-09T21:15:59,086 adding 'galaxy/tools/parameters/dynamic_options.py' 2026-04-09T21:15:59,091 adding 'galaxy/tools/parameters/grouping.py' 2026-04-09T21:15:59,093 adding 'galaxy/tools/parameters/input_translation.py' 2026-04-09T21:15:59,096 adding 'galaxy/tools/parameters/meta.py' 2026-04-09T21:15:59,098 adding 'galaxy/tools/parameters/options.py' 2026-04-09T21:15:59,099 adding 'galaxy/tools/parameters/populate_model.py' 2026-04-09T21:15:59,101 adding 'galaxy/tools/parameters/sanitize.py' 2026-04-09T21:15:59,104 adding 'galaxy/tools/parameters/validation.py' 2026-04-09T21:15:59,105 adding 'galaxy/tools/parameters/workflow_utils.py' 2026-04-09T21:15:59,107 adding 'galaxy/tools/parameters/wrapped.py' 2026-04-09T21:15:59,109 adding 'galaxy/tools/parameters/wrapped_json.py' 2026-04-09T21:15:59,112 adding 'galaxy/tools/search/__init__.py' 2026-04-09T21:15:59,114 adding 'galaxy/tools/util/__init__.py' 2026-04-09T21:15:59,118 adding 'galaxy/tools/util/maf_utilities.py' 2026-04-09T21:15:59,121 adding 'galaxy/tools/util/galaxyops/__init__.py' 2026-04-09T21:15:59,123 adding 'galaxy/visualization/__init__.py' 2026-04-09T21:15:59,125 adding 'galaxy/visualization/genomes.py' 2026-04-09T21:15:59,128 adding 'galaxy/visualization/data_providers/__init__.py' 2026-04-09T21:15:59,130 adding 'galaxy/visualization/data_providers/basic.py' 2026-04-09T21:15:59,131 adding 'galaxy/visualization/data_providers/cigar.py' 2026-04-09T21:15:59,138 adding 'galaxy/visualization/data_providers/genome.py' 2026-04-09T21:15:59,140 adding 'galaxy/visualization/data_providers/registry.py' 2026-04-09T21:15:59,143 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2026-04-09T21:15:59,144 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2026-04-09T21:15:59,147 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2026-04-09T21:15:59,148 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2026-04-09T21:15:59,150 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2026-04-09T21:15:59,152 adding 'galaxy/visualization/plugins/__init__.py' 2026-04-09T21:15:59,154 adding 'galaxy/visualization/plugins/config_parser.py' 2026-04-09T21:15:59,156 adding 'galaxy/visualization/plugins/datasource_testing.py' 2026-04-09T21:15:59,158 adding 'galaxy/visualization/plugins/plugin.py' 2026-04-09T21:15:59,160 adding 'galaxy/visualization/plugins/registry.py' 2026-04-09T21:15:59,162 adding 'galaxy/visualization/plugins/resource_parser.py' 2026-04-09T21:15:59,164 adding 'galaxy/webhooks/__init__.py' 2026-04-09T21:15:59,166 adding 'galaxy/work/__init__.py' 2026-04-09T21:15:59,168 adding 'galaxy/work/context.py' 2026-04-09T21:15:59,170 adding 'galaxy/workflow/__init__.py' 2026-04-09T21:15:59,172 adding 'galaxy/workflow/completion_monitor.py' 2026-04-09T21:15:59,174 adding 'galaxy/workflow/errors.py' 2026-04-09T21:15:59,177 adding 'galaxy/workflow/extract.py' 2026-04-09T21:15:59,192 adding 'galaxy/workflow/modules.py' 2026-04-09T21:15:59,195 adding 'galaxy/workflow/render.py' 2026-04-09T21:15:59,200 adding 'galaxy/workflow/run.py' 2026-04-09T21:15:59,204 adding 'galaxy/workflow/run_request.py' 2026-04-09T21:15:59,207 adding 'galaxy/workflow/scheduling_manager.py' 2026-04-09T21:15:59,209 adding 'galaxy/workflow/steps.py' 2026-04-09T21:15:59,211 adding 'galaxy/workflow/trs_proxy.py' 2026-04-09T21:15:59,213 adding 'galaxy/workflow/workflow_parameter_input_definitions.py' 2026-04-09T21:15:59,215 adding 'galaxy/workflow/completion_hooks/__init__.py' 2026-04-09T21:15:59,217 adding 'galaxy/workflow/completion_hooks/base.py' 2026-04-09T21:15:59,219 adding 'galaxy/workflow/completion_hooks/export.py' 2026-04-09T21:15:59,221 adding 'galaxy/workflow/completion_hooks/notification.py' 2026-04-09T21:15:59,223 adding 'galaxy/workflow/refactor/__init__.py' 2026-04-09T21:15:59,226 adding 'galaxy/workflow/refactor/execute.py' 2026-04-09T21:15:59,229 adding 'galaxy/workflow/refactor/schema.py' 2026-04-09T21:15:59,231 adding 'galaxy/workflow/reports/__init__.py' 2026-04-09T21:15:59,233 adding 'galaxy/workflow/reports/generators/__init__.py' 2026-04-09T21:15:59,235 adding 'galaxy/workflow/reports/generators/markdown.py' 2026-04-09T21:15:59,237 adding 'galaxy/workflow/resources/__init__.py' 2026-04-09T21:15:59,239 adding 'galaxy/workflow/resources/example.py.sample' 2026-04-09T21:15:59,241 adding 'galaxy/workflow/schedulers/__init__.py' 2026-04-09T21:15:59,242 adding 'galaxy/workflow/schedulers/core.py' 2026-04-09T21:15:59,245 adding 'galaxy_app-26.0.1.dev0.dist-info/licenses/LICENSE' 2026-04-09T21:15:59,247 adding 'galaxy_ext/__init__.py' 2026-04-09T21:15:59,249 adding 'galaxy_ext/py.typed' 2026-04-09T21:15:59,250 adding 'galaxy_ext/container_monitor/__init__.py' 2026-04-09T21:15:59,252 adding 'galaxy_ext/container_monitor/monitor.py' 2026-04-09T21:15:59,253 adding 'galaxy_ext/expressions/__init__.py' 2026-04-09T21:15:59,255 adding 'galaxy_ext/expressions/handle_job.py' 2026-04-09T21:15:59,257 adding 'galaxy_ext/metadata/__init__.py' 2026-04-09T21:15:59,258 adding 'galaxy_ext/metadata/set_metadata.py' 2026-04-09T21:15:59,260 adding 'tool_shed_client/__init__.py' 2026-04-09T21:15:59,262 adding 'tool_shed_client/py.typed' 2026-04-09T21:15:59,263 adding 'tool_shed_client/trs_util.py' 2026-04-09T21:15:59,266 adding 'tool_shed_client/schema/__init__.py' 2026-04-09T21:15:59,268 adding 'tool_shed_client/schema/trs.py' 2026-04-09T21:15:59,270 adding 'tool_shed_client/schema/trs_service_info.py' 2026-04-09T21:15:59,286 adding 'galaxy_app-26.0.1.dev0.dist-info/METADATA' 2026-04-09T21:15:59,289 adding 'galaxy_app-26.0.1.dev0.dist-info/WHEEL' 2026-04-09T21:15:59,291 adding 'galaxy_app-26.0.1.dev0.dist-info/top_level.txt' 2026-04-09T21:15:59,302 adding 'galaxy_app-26.0.1.dev0.dist-info/RECORD' 2026-04-09T21:15:59,331 removing build/bdist.linux-armv7l/wheel 2026-04-09T21:15:59,598 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2026-04-09T21:15:59,647 Created wheel for galaxy-app: filename=galaxy_app-26.0.1.dev0-py3-none-any.whl size=1669050 sha256=1b57cc3296769632a41856c87f6cbe5fff89e374e1c8eb6af4d3a36f1047a136 2026-04-09T21:15:59,648 Stored in directory: /tmp/pip-ephem-wheel-cache-t9vzyh79/wheels/ed/fc/95/44c3b4bf05da578d45f7c9361d55f585b03f6fe8b04d54e59f 2026-04-09T21:15:59,716 Successfully built galaxy-app 2026-04-09T21:15:59,762 Removed build tracker: '/tmp/pip-build-tracker-w3kx3136'