2026-04-09T21:17:25,201 Created temporary directory: /tmp/pip-ephem-wheel-cache-2jig7wit
2026-04-09T21:17:25,203 Created temporary directory: /tmp/pip-build-tracker-vh5olatx
2026-04-09T21:17:25,204 Initialized build tracking at /tmp/pip-build-tracker-vh5olatx
2026-04-09T21:17:25,204 Created build tracker: /tmp/pip-build-tracker-vh5olatx
2026-04-09T21:17:25,205 Entered build tracker: /tmp/pip-build-tracker-vh5olatx
2026-04-09T21:17:25,206 Created temporary directory: /tmp/pip-wheel-13sfzjui
2026-04-09T21:17:25,209 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-09T21:17:25,211 Created temporary directory: /tmp/pip-ephem-wheel-cache-_i1uruw6
2026-04-09T21:17:25,234 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-09T21:17:25,238 2 location(s) to search for versions of galaxy-tool-util:
2026-04-09T21:17:25,238 * https://pypi.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,238 * https://www.piwheels.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,238 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,239 Getting page https://pypi.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,240 Found index url https://pypi.org/simple
2026-04-09T21:17:25,414 Fetched page https://pypi.org/simple/galaxy-tool-util/ as application/vnd.pypi.simple.v1+json
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2026-04-09T21:17:25,889   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.2.dev0-py3-none-any.whl#sha256=bac9284cd692ba1e0a46d91866d402b2c99e49c190f7a4fb44a36652bf0798fc (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,890   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.4-py3-none-any.whl#sha256=307f8759a130b820d7c86b28c62ca080b9d1aa7ba5dafb22eb4690c740730d3a (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,890   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.3-py3-none-any.whl#sha256=542bb05f9a8a24d6b9a4277209fe55aae0f9601a4f12d4c8bca63efeb18c8662 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,891   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.2-py3-none-any.whl#sha256=808cd42183ec0d920334e9bf7991b7980f15d228cf9e51660f9fe818b8ed5c88 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,891   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.1-py3-none-any.whl#sha256=0b196fedfdd0976e81cf7c9f04af6b251eb3bfa4278c0887b1f4445b673f94ee (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,892   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.3-py3-none-any.whl#sha256=db96cadcc6f8e56d6be3cfa62f75c2344295e8ccbfd6d9275c6ce88da370dcff (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,893   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.2-py3-none-any.whl#sha256=c085d0b1a9def308de290fd6d681b37bb7f37c4e46e042b237db9caf1935b04c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,893   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.1-py3-none-any.whl#sha256=9cd9f379d45d5d069f014b0facb8a1d9632392022b59567f98006fe63446225c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,894   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.0-py3-none-any.whl#sha256=927f4fdf625da4aca1532a44f70edfe0a7d407bc53e2373117966c7385fd9a09 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,898   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.2.1-py3-none-any.whl#sha256=d693c91ba9a264e4f12b4c75e9f4e420fb3560f86f3a048f92a5b05918cb8b28 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,898   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.2.dev0-py3-none-any.whl#sha256=bb796ad2a4f5657c25f7312e7c8d0f46d3c7232be9391d04550f8e466a951bfa (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,899   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.4-py3-none-any.whl#sha256=546d3558e22fda293e159d0f7eb93f11e147244a69482877ec0599f257762d3c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,900   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.3-py3-none-any.whl#sha256=59b0e65740b5a9341df7c1885b04493cdd08b454fb1e1645e076bb1cba2f5576 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,900   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.2-py3-none-any.whl#sha256=8e7c8c2f0d753904d324796a652cc0ca7656fa1fb3c0af639bd630cfd7f4bf40 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,901   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.1-py3-none-any.whl#sha256=bc7f9b0857a2248be35d39f61778d0636c4a6cb52d965fdea09729ad0b34795e (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,901   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.dev0-py3-none-any.whl#sha256=2748d1c5a2fb05e4ba6137d14bf7b064e15f3a95303d9d0151cae644ad93dca4 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,902   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.6-py3-none-any.whl#sha256=e3b7b0358c03febefd7bb9f83eb4741dd096f91f3dc40e0d3792fc1923531418 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,903   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.5-py3-none-any.whl#sha256=c9254456b0a8fe9a3a2f9627774f4d649a84f0e54c3fa5a86191e87b596b5957 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,903   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.4-py3-none-any.whl#sha256=64b4df3ef8f64c4b78b97726e351f80acea60d6b21f9711b5c50af816397d87e (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,904   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.3-py3-none-any.whl#sha256=5be4a6a61b643f5ad95d7dd8d92daf9b27be5b58a7640620470dd8316d5502d3 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,904   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.2-py3-none-any.whl#sha256=ce2dab03064a3b13a28f913b3da8153f58e63211af0fda6a2973d57993807f43 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,905   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.1-py3-none-any.whl#sha256=ad17f422cdcfb16128e101b0d47abbb1c76924db7b47a898ee2edfbbf3e05b9a (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,905   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev3-py3-none-any.whl#sha256=67e932f2915049537c6620b254598bff4e579e3859844999d68fa2f5945acf8f (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,906   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev2-py3-none-any.whl#sha256=bfcb8dbe5c89c8ce9270720e64ebf7b71fa7fa08b7e221c2d89481d553d28395 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,906   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev1-py3-none-any.whl#sha256=5d1132ac3a279cf8879a16c569397370b1c436b66247f46fdf2f3a954e330e6a (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,907   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev0-py3-none-any.whl#sha256=911101bcd932210c54463069e3120352c34b2b9123fbf6e32727e1ce9f5456f9 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-04-09T21:17:25,907   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.5-py2.py3-none-any.whl#sha256=9894efec3fbc3f98e89685fb42a2fc7daa67cdce0e0e6dfb79905269e2ed3e45 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,908   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.4-py2.py3-none-any.whl#sha256=b90ea2c90c0b73b9e25a07cbcc5d43eca725d97d3f50b028e7fd54d8b70d7e12 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,908   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.3-py2.py3-none-any.whl#sha256=0c68fd3ac2d2d7e19a7cac3f59dcb9e0caf97fe6cd371fc76100c3dc86e32b03 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,909   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.2-py2.py3-none-any.whl#sha256=fd9a83bf0e258eff186c6370c885532646ec59cc7978954eca3b4c079ee9057a (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,909   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.1-py2.py3-none-any.whl#sha256=d5ed73dc1c329c832ec7141f0781df7f053d89af344c8efe6915a4d898cdf5d4 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,910   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.2-py2.py3-none-any.whl#sha256=0cf7801e7f12ab1ba9c9f196540d7c0fcf9ba139259eb0f6109a98e1e78ae072 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,911   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.1-py2.py3-none-any.whl#sha256=f0791103c6062293d51b3f697ff4057bcd90ed9b5642f0d152eea20ef43d9b35 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,911   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.0-py2.py3-none-any.whl#sha256=cca434bae57fd8b7a80f84ec85bac9084489d9074a0ec692fb3bdaea47b7e8dd (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,912   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.2-py2.py3-none-any.whl#sha256=a84e8ee9f22f4bb9793cd25950a1b38358f108c3de9bb2c19ad9321a4272b3d3 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,912   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.1-py2.py3-none-any.whl#sha256=bec63d4e6695019c464fead760b00b9d20e83efdf7490e1fff13a516a21aadb3 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,913   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0-py2.py3-none-any.whl#sha256=0214feaec9bb4c362b2461b50ad751b247a7ceadccf57cae7cf262b8a4df10ac (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,913   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev6-py2.py3-none-any.whl#sha256=10c00c2a7ced0c167418dd0dbf0af5bab4588d0f0025740e322621ea1c3c05df (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,914   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev5-py2.py3-none-any.whl#sha256=b7d04bcb8715d5f9597918b666b2ab96838d8f100d3ab8bb3a5b2d954401a82f (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,915   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev4-py2.py3-none-any.whl#sha256=b9c2a44ba7a71ee466b397ed348d401d8f3865ff82f51127f6dfe29aa4e40d45 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,915   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev3-py2.py3-none-any.whl#sha256=ccbafd174fc71bd4401c83e5bf37d84e9d04f0235515a54c96000bcd39601718 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,916   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev2-py2.py3-none-any.whl#sha256=e14147315dd322f53805711ba634bc6cf6b8205eabbf4c75d0e763dc4609a7a9 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,916   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev1-py2.py3-none-any.whl#sha256=564fa532511f56f8096c9a88ba2276ea999a2818f49f901bba0803d388a73efe (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,917   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev0-py2.py3-none-any.whl#sha256=c90fad8221d9dec650a2bbdae38da80e36bf6c3e14379ad4e629e3064f193135 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,917   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.1-py2.py3-none-any.whl#sha256=49efdde3e1812fd468d892ec9482f14582c4a7808a9f2a51729b0dcc6fb71534 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,918   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0-py2.py3-none-any.whl#sha256=345ffecd57588029147b5157b0208998837a91801db2fd07bd468323f62cff8d (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,918   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev2-py2.py3-none-any.whl#sha256=998397ad8197715132eef7e82e4e4b94461fbee62a59a7ded386fb68f6b28b91 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,919   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev1-py2.py3-none-any.whl#sha256=d37c148bb818e8ea85235cbffb29eaac409ea0bfaf925cd03236539cf43e98fe (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,919   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev0-py2.py3-none-any.whl#sha256=986efe8fe9ab9919d3758da577bdf0422b9bb5c6ad06e9ad50cf40700affb918 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,920   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0-py2.py3-none-any.whl#sha256=4c19a071c7810699ca7f55cb4f1e5b570c3f2aadf94eee4788b0aae6bffa5329 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,920   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0.dev2-py2.py3-none-any.whl#sha256=0b27d440a666a9c9a01a19e185d99d2ea1a155b787b406279c9febbdad9615fa (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,921   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0.dev1-py2.py3-none-any.whl#sha256=c9befeae4659e88dae1b60eea48cfae03706afaf16610e7105bf6fbb0c9362bd (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,921   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev5-py2.py3-none-any.whl#sha256=07b2932888bc892f556721bca075c8af09f4bb395fcc33a3733d53868a183596 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,922   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev4-py2.py3-none-any.whl#sha256=1d8a6bb9e6104db4ea1cd468ccbf6a1d4e27c8b7c8e5a70c1ab09fed151c69b4 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,922   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev3-py2.py3-none-any.whl#sha256=4f37bcc38772266c1fe9eb830150eb8ab4ed7d027d3cd36c7615329c288f19e2 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,923   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev2-py2.py3-none-any.whl#sha256=31592fa5ca14dec20729f34ff000168d49d0248143fa3c9ab1efdf31339514d6 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,923   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev1-py2.py3-none-any.whl#sha256=f37d30adcac65b055e489fb0b02f69a7edd812f321eb1da44795b2bd1f2abc93 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,924   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev0-py2.py3-none-any.whl#sha256=f5d584c26cda61bce66239bcfe6b148ed1752585ebebdcf03cb423a252899e11 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,924   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.1-py2.py3-none-any.whl#sha256=d2026a5c374a2206158eb34518473e14ded7c8a7f80d35c743ad31e75c5552bb (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,925   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0-py2.py3-none-any.whl#sha256=b9ae70a1744abff6164cab3304cf279e8683944b8cf2d95c26f6df7dfe9eb4c5 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,925   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev5-py2.py3-none-any.whl#sha256=f869574a225f69e7b51f6dba165eec4a58fe6c76d45924aecd9cc44e6513ad77 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,926   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev4-py2.py3-none-any.whl#sha256=f8287860bf6f524db3bd2d9096b97595aecea1a1e321065d5e36d971f5cd7b79 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,926   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,927   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,927   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,928   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-04-09T21:17:25,928 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,929 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/
2026-04-09T21:17:25,960 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates
2026-04-09T21:17:25,980 Collecting galaxy-tool-util==26.0.1.dev0
2026-04-09T21:17:25,982   Created temporary directory: /tmp/pip-unpack-gmai4ahc
2026-04-09T21:17:26,444   Downloading galaxy_tool_util-26.0.1.dev0.tar.gz (478 kB)
2026-04-09T21:17:26,995   Added galaxy-tool-util==26.0.1.dev0 from https://files.pythonhosted.org/packages/05/07/06f64a958fb945b9b6a2f1269de466264aa96336d73f6cb1f13ef48cb7e3/galaxy_tool_util-26.0.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-vh5olatx'
2026-04-09T21:17:26,998   Created temporary directory: /tmp/pip-build-env-ejz340ym
2026-04-09T21:17:27,003   Installing build dependencies: started
2026-04-09T21:17:27,004   Running command pip subprocess to install build dependencies
2026-04-09T21:17:28,160   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-09T21:17:28,605   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-09T21:17:28,629   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-09T21:17:30,383   Collecting setuptools
2026-04-09T21:17:30,482     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-09T21:17:33,451   Installing collected packages: setuptools
2026-04-09T21:17:36,551   Successfully installed setuptools-82.0.1
2026-04-09T21:17:36,822   Installing build dependencies: finished with status 'done'
2026-04-09T21:17:36,828   Getting requirements to build wheel: started
2026-04-09T21:17:36,829   Running command Getting requirements to build wheel
2026-04-09T21:17:37,952   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:37,953   !!

2026-04-09T21:17:37,954           ********************************************************************************
2026-04-09T21:17:37,954           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:37,956           `keywords = ['Galaxy']`

2026-04-09T21:17:37,957           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:37,957           consider this value unless `keywords` is listed as `dynamic`.

2026-04-09T21:17:37,959           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:37,960           To prevent this problem, you can list `keywords` under `dynamic` or alternatively
2026-04-09T21:17:37,961           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:37,961           configuration.
2026-04-09T21:17:37,962           ********************************************************************************

2026-04-09T21:17:37,963   !!
2026-04-09T21:17:37,964     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:37,964   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:37,965   !!

2026-04-09T21:17:37,966           ********************************************************************************
2026-04-09T21:17:37,967           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:37,968           `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']`

2026-04-09T21:17:37,969           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:37,970           consider this value unless `classifiers` is listed as `dynamic`.

2026-04-09T21:17:37,971           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:37,972           To prevent this problem, you can list `classifiers` under `dynamic` or alternatively
2026-04-09T21:17:37,972           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:37,973           configuration.
2026-04-09T21:17:37,973           ********************************************************************************

2026-04-09T21:17:37,974   !!
2026-04-09T21:17:37,974     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:37,975   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:37,975   !!

2026-04-09T21:17:37,976           ********************************************************************************
2026-04-09T21:17:37,976           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:37,977           `scripts = ['galaxy-tool-test = galaxy.tool_util.verify.script:main', 'galaxy-tool-test-case-validation = galaxy.tool_util.parameters.scripts.validate_test_cases:main', 'galaxy-tool-upgrade-advisor = galaxy.tool_util.upgrade.script:main', 'validate-test-format = galaxy.tool_util.validate_test_format:main', 'mulled-build = galaxy.tool_util.deps.mulled.mulled_build:main', 'mulled-build-channel = galaxy.tool_util.deps.mulled.mulled_build_channel:main', 'mulled-build-files = galaxy.tool_util.deps.mulled.mulled_build_files:main', 'mulled-build-tool = galaxy.tool_util.deps.mulled.mulled_build_tool:main', 'mulled-hash = galaxy.tool_util.deps.mulled.mulled_hash:main', 'mulled-list = galaxy.tool_util.deps.mulled.mulled_list:main', 'mulled-search = galaxy.tool_util.deps.mulled.mulled_search:main', 'mulled-update-singularity-containers = galaxy.tool_util.deps.mulled.mulled_update_singularity_containers:main']`

2026-04-09T21:17:37,978           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:37,979           consider this value unless `scripts` is listed as `dynamic`.

2026-04-09T21:17:37,980           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:37,981           To prevent this problem, you can list `scripts` under `dynamic` or alternatively
2026-04-09T21:17:37,982           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:37,982           configuration.
2026-04-09T21:17:37,983           ********************************************************************************

2026-04-09T21:17:37,984   !!
2026-04-09T21:17:37,984     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:38,057   running egg_info
2026-04-09T21:17:38,063   writing galaxy_tool_util.egg-info/PKG-INFO
2026-04-09T21:17:38,071   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2026-04-09T21:17:38,075   writing requirements to galaxy_tool_util.egg-info/requires.txt
2026-04-09T21:17:38,077   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2026-04-09T21:17:38,124   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:38,135   reading manifest template 'MANIFEST.in'
2026-04-09T21:17:38,141   adding license file 'LICENSE'
2026-04-09T21:17:38,152   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:38,250   Getting requirements to build wheel: finished with status 'done'
2026-04-09T21:17:38,254   Created temporary directory: /tmp/pip-modern-metadata-055yrva2
2026-04-09T21:17:38,256   Preparing metadata (pyproject.toml): started
2026-04-09T21:17:38,258   Running command Preparing metadata (pyproject.toml)
2026-04-09T21:17:38,853   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:38,853   !!

2026-04-09T21:17:38,854           ********************************************************************************
2026-04-09T21:17:38,855           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:38,855           `keywords = ['Galaxy']`

2026-04-09T21:17:38,856           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:38,857           consider this value unless `keywords` is listed as `dynamic`.

2026-04-09T21:17:38,858           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:38,859           To prevent this problem, you can list `keywords` under `dynamic` or alternatively
2026-04-09T21:17:38,859           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:38,859           configuration.
2026-04-09T21:17:38,860           ********************************************************************************

2026-04-09T21:17:38,861   !!
2026-04-09T21:17:38,861     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:38,862   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:38,863   !!

2026-04-09T21:17:38,864           ********************************************************************************
2026-04-09T21:17:38,864           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:38,865           `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']`

2026-04-09T21:17:38,866           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:38,867           consider this value unless `classifiers` is listed as `dynamic`.

2026-04-09T21:17:38,868           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:38,870           To prevent this problem, you can list `classifiers` under `dynamic` or alternatively
2026-04-09T21:17:38,870           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:38,871           configuration.
2026-04-09T21:17:38,871           ********************************************************************************

2026-04-09T21:17:38,873   !!
2026-04-09T21:17:38,873     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:38,874   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:38,874   !!

2026-04-09T21:17:38,876           ********************************************************************************
2026-04-09T21:17:38,876           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:38,877           `scripts = ['galaxy-tool-test = galaxy.tool_util.verify.script:main', 'galaxy-tool-test-case-validation = galaxy.tool_util.parameters.scripts.validate_test_cases:main', 'galaxy-tool-upgrade-advisor = galaxy.tool_util.upgrade.script:main', 'validate-test-format = galaxy.tool_util.validate_test_format:main', 'mulled-build = galaxy.tool_util.deps.mulled.mulled_build:main', 'mulled-build-channel = galaxy.tool_util.deps.mulled.mulled_build_channel:main', 'mulled-build-files = galaxy.tool_util.deps.mulled.mulled_build_files:main', 'mulled-build-tool = galaxy.tool_util.deps.mulled.mulled_build_tool:main', 'mulled-hash = galaxy.tool_util.deps.mulled.mulled_hash:main', 'mulled-list = galaxy.tool_util.deps.mulled.mulled_list:main', 'mulled-search = galaxy.tool_util.deps.mulled.mulled_search:main', 'mulled-update-singularity-containers = galaxy.tool_util.deps.mulled.mulled_update_singularity_containers:main']`

2026-04-09T21:17:38,879           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:38,879           consider this value unless `scripts` is listed as `dynamic`.

2026-04-09T21:17:38,880           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:38,881           To prevent this problem, you can list `scripts` under `dynamic` or alternatively
2026-04-09T21:17:38,882           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:38,882           configuration.
2026-04-09T21:17:38,883           ********************************************************************************

2026-04-09T21:17:38,884   !!
2026-04-09T21:17:38,884     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:38,938   running dist_info
2026-04-09T21:17:38,948   creating /tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info
2026-04-09T21:17:38,949   writing /tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/PKG-INFO
2026-04-09T21:17:38,957   writing dependency_links to /tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/dependency_links.txt
2026-04-09T21:17:38,960   writing requirements to /tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/requires.txt
2026-04-09T21:17:38,961   writing top-level names to /tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/top_level.txt
2026-04-09T21:17:38,963   writing manifest file '/tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:39,003   reading manifest file '/tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:39,005   reading manifest template 'MANIFEST.in'
2026-04-09T21:17:39,011   adding license file 'LICENSE'
2026-04-09T21:17:39,019   writing manifest file '/tmp/pip-modern-metadata-055yrva2/galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:39,021   creating '/tmp/pip-modern-metadata-055yrva2/galaxy_tool_util-26.0.1.dev0.dist-info'
2026-04-09T21:17:39,144   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-09T21:17:39,151   Source in /tmp/pip-wheel-13sfzjui/galaxy-tool-util_baf720ca6e1f46b4ae0433a7f4f7f3a9 has version 26.0.1.dev0, which satisfies requirement galaxy-tool-util==26.0.1.dev0 from https://files.pythonhosted.org/packages/05/07/06f64a958fb945b9b6a2f1269de466264aa96336d73f6cb1f13ef48cb7e3/galaxy_tool_util-26.0.1.dev0.tar.gz
2026-04-09T21:17:39,152   Removed galaxy-tool-util==26.0.1.dev0 from https://files.pythonhosted.org/packages/05/07/06f64a958fb945b9b6a2f1269de466264aa96336d73f6cb1f13ef48cb7e3/galaxy_tool_util-26.0.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-vh5olatx'
2026-04-09T21:17:39,162 Created temporary directory: /tmp/pip-unpack-415crm4r
2026-04-09T21:17:39,163 Building wheels for collected packages: galaxy-tool-util
2026-04-09T21:17:39,167   Created temporary directory: /tmp/pip-wheel-r3i34yx1
2026-04-09T21:17:39,167   Destination directory: /tmp/pip-wheel-r3i34yx1
2026-04-09T21:17:39,170   Building wheel for galaxy-tool-util (pyproject.toml): started
2026-04-09T21:17:39,171   Running command Building wheel for galaxy-tool-util (pyproject.toml)
2026-04-09T21:17:39,732   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:39,732   !!

2026-04-09T21:17:39,734           ********************************************************************************
2026-04-09T21:17:39,734           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:39,735           `keywords = ['Galaxy']`

2026-04-09T21:17:39,736           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:39,736           consider this value unless `keywords` is listed as `dynamic`.

2026-04-09T21:17:39,737           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:39,738           To prevent this problem, you can list `keywords` under `dynamic` or alternatively
2026-04-09T21:17:39,739           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:39,739           configuration.
2026-04-09T21:17:39,740           ********************************************************************************

2026-04-09T21:17:39,741   !!
2026-04-09T21:17:39,741     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:39,742   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:39,742   !!

2026-04-09T21:17:39,743           ********************************************************************************
2026-04-09T21:17:39,744           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:39,745           `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']`

2026-04-09T21:17:39,746           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:39,747           consider this value unless `classifiers` is listed as `dynamic`.

2026-04-09T21:17:39,748           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:39,749           To prevent this problem, you can list `classifiers` under `dynamic` or alternatively
2026-04-09T21:17:39,750           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:39,751           configuration.
2026-04-09T21:17:39,751           ********************************************************************************

2026-04-09T21:17:39,753   !!
2026-04-09T21:17:39,753     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:39,754   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored.
2026-04-09T21:17:39,754   !!

2026-04-09T21:17:39,756           ********************************************************************************
2026-04-09T21:17:39,756           The following seems to be defined outside of `pyproject.toml`:

2026-04-09T21:17:39,758           `scripts = ['galaxy-tool-test = galaxy.tool_util.verify.script:main', 'galaxy-tool-test-case-validation = galaxy.tool_util.parameters.scripts.validate_test_cases:main', 'galaxy-tool-upgrade-advisor = galaxy.tool_util.upgrade.script:main', 'validate-test-format = galaxy.tool_util.validate_test_format:main', 'mulled-build = galaxy.tool_util.deps.mulled.mulled_build:main', 'mulled-build-channel = galaxy.tool_util.deps.mulled.mulled_build_channel:main', 'mulled-build-files = galaxy.tool_util.deps.mulled.mulled_build_files:main', 'mulled-build-tool = galaxy.tool_util.deps.mulled.mulled_build_tool:main', 'mulled-hash = galaxy.tool_util.deps.mulled.mulled_hash:main', 'mulled-list = galaxy.tool_util.deps.mulled.mulled_list:main', 'mulled-search = galaxy.tool_util.deps.mulled.mulled_search:main', 'mulled-update-singularity-containers = galaxy.tool_util.deps.mulled.mulled_update_singularity_containers:main']`

2026-04-09T21:17:39,759           According to the spec (see the link below), however, setuptools CANNOT
2026-04-09T21:17:39,760           consider this value unless `scripts` is listed as `dynamic`.

2026-04-09T21:17:39,761           https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table

2026-04-09T21:17:39,762           To prevent this problem, you can list `scripts` under `dynamic` or alternatively
2026-04-09T21:17:39,762           remove the `[project]` table from your file and rely entirely on other means of
2026-04-09T21:17:39,763           configuration.
2026-04-09T21:17:39,763           ********************************************************************************

2026-04-09T21:17:39,764   !!
2026-04-09T21:17:39,764     _handle_missing_dynamic(dist, project_table)
2026-04-09T21:17:39,807   running bdist_wheel
2026-04-09T21:17:39,824   running build
2026-04-09T21:17:39,825   running build_py
2026-04-09T21:17:39,831   creating build/lib/galaxy
2026-04-09T21:17:39,832   copying galaxy/__init__.py -> build/lib/galaxy
2026-04-09T21:17:39,835   creating build/lib/galaxy/tool_util
2026-04-09T21:17:39,836   copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,839   copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,841   copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,843   copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,846   copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,848   copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,849   copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,851   copying galaxy/tool_util/model_factory.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,853   copying galaxy/tool_util/validate_test_format.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,855   copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,857   copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util
2026-04-09T21:17:39,859   creating build/lib/galaxy/tool_util/locations
2026-04-09T21:17:39,860   copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations
2026-04-09T21:17:39,862   copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations
2026-04-09T21:17:39,864   copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations
2026-04-09T21:17:39,866   copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations
2026-04-09T21:17:39,868   creating build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,869   copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,871   copying galaxy/tool_util/verify/_types.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,873   copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,875   copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,879   copying galaxy/tool_util/verify/parse.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,882   copying galaxy/tool_util/verify/codegen.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,884   copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,886   copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:39,889   creating build/lib/galaxy/tool_util/biotools
2026-04-09T21:17:39,890   copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools
2026-04-09T21:17:39,892   copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools
2026-04-09T21:17:39,894   copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools
2026-04-09T21:17:39,896   creating build/lib/galaxy/tool_util/client
2026-04-09T21:17:39,897   copying galaxy/tool_util/client/landing.py -> build/lib/galaxy/tool_util/client
2026-04-09T21:17:39,899   copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client
2026-04-09T21:17:39,901   copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client
2026-04-09T21:17:39,903   creating build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,904   copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,906   copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,908   copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,910   copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,912   copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,914   copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox
2026-04-09T21:17:39,918   creating build/lib/galaxy/tool_util/unittest_utils
2026-04-09T21:17:39,919   copying galaxy/tool_util/unittest_utils/parameters.py -> build/lib/galaxy/tool_util/unittest_utils
2026-04-09T21:17:39,921   copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils
2026-04-09T21:17:39,922   copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils
2026-04-09T21:17:39,924   copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils
2026-04-09T21:17:39,926   creating build/lib/galaxy/tool_util/upgrade
2026-04-09T21:17:39,927   copying galaxy/tool_util/upgrade/__init__.py -> build/lib/galaxy/tool_util/upgrade
2026-04-09T21:17:39,930   copying galaxy/tool_util/upgrade/script.py -> build/lib/galaxy/tool_util/upgrade
2026-04-09T21:17:39,933   creating build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,934   copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,936   copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,938   copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,941   copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,944   copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,946   copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,948   copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,950   copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl
2026-04-09T21:17:39,954   creating build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,955   copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,956   copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,959   copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,961   copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,964   copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,966   copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,968   copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,970   copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,973   copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,974   copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,976   copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,979   copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,981   copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,983   copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,985   copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,987   copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps
2026-04-09T21:17:39,990   creating build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:39,991   copying galaxy/tool_util/parameters/state.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:39,993   copying galaxy/tool_util/parameters/visitor.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:39,995   copying galaxy/tool_util/parameters/model_validation.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:39,997   copying galaxy/tool_util/parameters/json.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:39,999   copying galaxy/tool_util/parameters/__init__.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:40,001   copying galaxy/tool_util/parameters/case.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:40,003   copying galaxy/tool_util/parameters/factory.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:40,006   copying galaxy/tool_util/parameters/convert.py -> build/lib/galaxy/tool_util/parameters
2026-04-09T21:17:40,009   creating build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,010   copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,012   copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,015   copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,017   copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,019   copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,022   copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,025   copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,027   copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,029   copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,033   copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,035   copying galaxy/tool_util/parser/parameter_validators.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,038   copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser
2026-04-09T21:17:40,041   creating build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,042   copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,044   copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,046   creating build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,047   copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,049   copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,051   copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,053   copying galaxy/tool_util/linters/output.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,056   copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,058   copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,060   copying galaxy/tool_util/linters/datatypes.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,062   copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,063   copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,066   copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,068   copying galaxy/tool_util/linters/xsd.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,069   copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,071   copying galaxy/tool_util/linters/required_files.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,073   copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,075   copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,078   creating build/lib/galaxy/tool_util/data
2026-04-09T21:17:40,079   copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data
2026-04-09T21:17:40,081   copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data
2026-04-09T21:17:40,086   creating build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,087   copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,089   copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,091   copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,093   copying galaxy/tool_util/verify/asserts/_types.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,095   copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,097   copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,098   copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,101   copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,102   copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,105   copying galaxy/tool_util/verify/asserts/image.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,107   copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,110   creating build/lib/galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,111   copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,113   copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,114   copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,117   creating build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,118   copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,120   copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,122   copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,124   copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,126   copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,128   copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,131   creating build/lib/galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,132   copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,135   creating build/lib/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,136   copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,139   copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,141   copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,143   copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,146   creating build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,147   copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,150   copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,152   copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,154   copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,157   copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,159   copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,160   copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,162   copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,165   copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,167   copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,170   copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,172   copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,174   creating build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,175   copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,177   copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,180   copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,182   copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,185   copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,187   copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,189   copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,191   copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,193   copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,196   copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,199   creating build/lib/galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,200   copying galaxy/tool_util/parameters/scripts/__init__.py -> build/lib/galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,201   copying galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/lib/galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,204   creating build/lib/galaxy/tool_util/data/bundles
2026-04-09T21:17:40,205   copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles
2026-04-09T21:17:40,207   copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles
2026-04-09T21:17:40,209   running egg_info
2026-04-09T21:17:40,219   writing galaxy_tool_util.egg-info/PKG-INFO
2026-04-09T21:17:40,225   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2026-04-09T21:17:40,228   writing requirements to galaxy_tool_util.egg-info/requires.txt
2026-04-09T21:17:40,229   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2026-04-09T21:17:40,260   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:40,270   reading manifest template 'MANIFEST.in'
2026-04-09T21:17:40,275   adding license file 'LICENSE'
2026-04-09T21:17:40,285   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-04-09T21:17:40,289   /tmp/pip-build-env-ejz340ym/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration.
2026-04-09T21:17:40,289   !!

2026-04-09T21:17:40,290           ********************************************************************************
2026-04-09T21:17:40,291           ############################
2026-04-09T21:17:40,291           # Package would be ignored #
2026-04-09T21:17:40,292           ############################
2026-04-09T21:17:40,292           Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1],
2026-04-09T21:17:40,293           but it is absent from setuptools' `packages` configuration.

2026-04-09T21:17:40,294           This leads to an ambiguous overall configuration. If you want to distribute this
2026-04-09T21:17:40,294           package, please make sure that 'galaxy.tool_util.xsd' is explicitly added
2026-04-09T21:17:40,295           to the `packages` configuration field.

2026-04-09T21:17:40,296           Alternatively, you can also rely on setuptools' discovery methods
2026-04-09T21:17:40,296           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-04-09T21:17:40,297           instead of `find_packages(...)`/`find:`).

2026-04-09T21:17:40,298           You can read more about "package discovery" on setuptools documentation page:

2026-04-09T21:17:40,299           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-04-09T21:17:40,300           If you don't want 'galaxy.tool_util.xsd' to be distributed and are
2026-04-09T21:17:40,301           already explicitly excluding 'galaxy.tool_util.xsd' via
2026-04-09T21:17:40,301           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-04-09T21:17:40,302           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-04-09T21:17:40,302           combination with a more fine grained `package-data` configuration.

2026-04-09T21:17:40,304           You can read more about "package data files" on setuptools documentation page:

2026-04-09T21:17:40,305           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-04-09T21:17:40,306           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-04-09T21:17:40,307                 even if it does not contain any `.py` files.
2026-04-09T21:17:40,307                 On the other hand, currently there is no concept of package data
2026-04-09T21:17:40,308                 directory, all directories are treated like packages.
2026-04-09T21:17:40,309           ********************************************************************************

2026-04-09T21:17:40,310   !!
2026-04-09T21:17:40,310     check.warn(importable)
2026-04-09T21:17:40,311   copying galaxy/py.typed -> build/lib/galaxy
2026-04-09T21:17:40,311   creating build/lib/galaxy/tool_util/xsd
2026-04-09T21:17:40,312   copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd
2026-04-09T21:17:40,313   copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd
2026-04-09T21:17:40,315   copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd
2026-04-09T21:17:40,317   copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd
2026-04-09T21:17:40,326   copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify
2026-04-09T21:17:40,328   copying galaxy/tool_util/upgrade/upgrade_codes.json -> build/lib/galaxy/tool_util/upgrade
2026-04-09T21:17:40,331   copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,334   copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,336   copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-04-09T21:17:40,338   copying galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/lib/galaxy/tool_util/linters
2026-04-09T21:17:40,342   copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,345   copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,347   copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,369   installing to build/bdist.linux-armv7l/wheel
2026-04-09T21:17:40,370   running install
2026-04-09T21:17:40,392   running install_lib
2026-04-09T21:17:40,398   creating build/bdist.linux-armv7l/wheel
2026-04-09T21:17:40,400   creating build/bdist.linux-armv7l/wheel/galaxy
2026-04-09T21:17:40,401   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy
2026-04-09T21:17:40,403   copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy
2026-04-09T21:17:40,405   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util
2026-04-09T21:17:40,406   copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,409   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2026-04-09T21:17:40,410   copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-04-09T21:17:40,412   copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-04-09T21:17:40,414   copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-04-09T21:17:40,416   copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-04-09T21:17:40,435   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2026-04-09T21:17:40,436   copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-04-09T21:17:40,438   copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-04-09T21:17:40,440   copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-04-09T21:17:40,442   copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-04-09T21:17:40,444   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2026-04-09T21:17:40,446   copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,448   copying build/lib/galaxy/tool_util/verify/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,450   copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,452   copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,455   copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,459   copying build/lib/galaxy/tool_util/verify/parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,462   copying build/lib/galaxy/tool_util/verify/codegen.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,465   copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,468   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,469   copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,471   copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,474   copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,476   copying build/lib/galaxy/tool_util/verify/asserts/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,478   copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,480   copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,483   copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,485   copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,487   copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,490   copying build/lib/galaxy/tool_util/verify/asserts/image.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,493   copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-04-09T21:17:40,496   copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-04-09T21:17:40,499   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2026-04-09T21:17:40,500   copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-04-09T21:17:40,503   copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-04-09T21:17:40,505   copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-04-09T21:17:40,507   copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,510   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client
2026-04-09T21:17:40,511   copying build/lib/galaxy/tool_util/client/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-04-09T21:17:40,514   copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-04-09T21:17:40,517   copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-04-09T21:17:40,519   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2026-04-09T21:17:40,521   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,523   copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,525   copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,527   copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-04-09T21:17:40,529   copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,532   copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,534   copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,537   copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,539   copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,541   copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-04-09T21:17:40,546   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,547   copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,549   copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,551   copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,553   copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,556   copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,558   copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-04-09T21:17:40,561   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,563   copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,566   copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters
2026-04-09T21:17:40,569   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils
2026-04-09T21:17:40,570   copying build/lib/galaxy/tool_util/unittest_utils/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-04-09T21:17:40,572   copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-04-09T21:17:40,574   copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-04-09T21:17:40,577   copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-04-09T21:17:40,579   copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,582   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/upgrade
2026-04-09T21:17:40,583   copying build/lib/galaxy/tool_util/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-04-09T21:17:40,587   copying build/lib/galaxy/tool_util/upgrade/upgrade_codes.json -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-04-09T21:17:40,589   copying build/lib/galaxy/tool_util/upgrade/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-04-09T21:17:40,592   copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,595   copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,597   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2026-04-09T21:17:40,598   copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,601   copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,604   copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,607   copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,611   copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,613   copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,615   copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,617   copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-04-09T21:17:40,620   copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,623   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2026-04-09T21:17:40,625   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,626   copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,629   copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,632   copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,634   copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-04-09T21:17:40,636   copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,639   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,641   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,643   copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,646   copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,648   copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,651   copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,653   copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,654   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,656   copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,658   copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,660   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,662   copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,665   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,667   copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-04-09T21:17:40,669   copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,671   copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,673   copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,675   copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,678   copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,679   copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,681   copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,684   copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,685   copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,687   copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,690   copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,692   copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,694   copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,697   copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,699   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,700   copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,702   copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,704   copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,706   copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,709   copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,711   copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,713   copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,715   copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,717   copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,718   copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,721   copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-04-09T21:17:40,723   copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-04-09T21:17:40,725   copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,727   copying build/lib/galaxy/tool_util/model_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,729   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters
2026-04-09T21:17:40,730   copying build/lib/galaxy/tool_util/parameters/state.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,732   copying build/lib/galaxy/tool_util/parameters/visitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,734   copying build/lib/galaxy/tool_util/parameters/model_validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,736   copying build/lib/galaxy/tool_util/parameters/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,738   copying build/lib/galaxy/tool_util/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,740   copying build/lib/galaxy/tool_util/parameters/case.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,743   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,744   copying build/lib/galaxy/tool_util/parameters/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,745   copying build/lib/galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts
2026-04-09T21:17:40,747   copying build/lib/galaxy/tool_util/parameters/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,750   copying build/lib/galaxy/tool_util/parameters/convert.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-04-09T21:17:40,753   copying build/lib/galaxy/tool_util/validate_test_format.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,755   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2026-04-09T21:17:40,756   copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,758   copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,760   copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,762   copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,764   copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,767   copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,770   copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,772   copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,774   copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,778   copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,780   copying build/lib/galaxy/tool_util/parser/parameter_validators.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,782   copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-04-09T21:17:40,785   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2026-04-09T21:17:40,786   copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-04-09T21:17:40,789   copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-04-09T21:17:40,791   copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-04-09T21:17:40,792   copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-04-09T21:17:40,794   copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-04-09T21:17:40,796   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2026-04-09T21:17:40,797   copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,799   copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,800   copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,802   copying build/lib/galaxy/tool_util/linters/output.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,804   copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,806   copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,809   copying build/lib/galaxy/tool_util/linters/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,811   copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,812   copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,816   copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,818   copying build/lib/galaxy/tool_util/linters/xsd.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,819   copying build/lib/galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,831   copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,834   copying build/lib/galaxy/tool_util/linters/required_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,837   copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,839   copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-04-09T21:17:40,845   copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,849   copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-04-09T21:17:40,852   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data
2026-04-09T21:17:40,855   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles
2026-04-09T21:17:40,857   copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles
2026-04-09T21:17:40,860   copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles
2026-04-09T21:17:40,862   copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data
2026-04-09T21:17:40,865   copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data
2026-04-09T21:17:40,871   running install_egg_info
2026-04-09T21:17:40,878   Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_tool_util-26.0.1.dev0-py3.11.egg-info
2026-04-09T21:17:40,892   running install_scripts
2026-04-09T21:17:40,906   creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-26.0.1.dev0.dist-info/WHEEL
2026-04-09T21:17:40,909   creating '/tmp/pip-wheel-r3i34yx1/.tmp-hvp9te3_/galaxy_tool_util-26.0.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-09T21:17:40,912   adding 'galaxy/__init__.py'
2026-04-09T21:17:40,913   adding 'galaxy/py.typed'
2026-04-09T21:17:40,916   adding 'galaxy/tool_util/__init__.py'
2026-04-09T21:17:40,918   adding 'galaxy/tool_util/edam_util.py'
2026-04-09T21:17:40,919   adding 'galaxy/tool_util/fetcher.py'
2026-04-09T21:17:40,922   adding 'galaxy/tool_util/lint.py'
2026-04-09T21:17:40,924   adding 'galaxy/tool_util/loader.py'
2026-04-09T21:17:40,926   adding 'galaxy/tool_util/loader_directory.py'
2026-04-09T21:17:40,927   adding 'galaxy/tool_util/model_factory.py'
2026-04-09T21:17:40,929   adding 'galaxy/tool_util/output_checker.py'
2026-04-09T21:17:40,931   adding 'galaxy/tool_util/provided_metadata.py'
2026-04-09T21:17:40,932   adding 'galaxy/tool_util/validate_test_format.py'
2026-04-09T21:17:40,934   adding 'galaxy/tool_util/version.py'
2026-04-09T21:17:40,935   adding 'galaxy/tool_util/biotools/__init__.py'
2026-04-09T21:17:40,936   adding 'galaxy/tool_util/biotools/interface.py'
2026-04-09T21:17:40,938   adding 'galaxy/tool_util/biotools/source.py'
2026-04-09T21:17:40,940   adding 'galaxy/tool_util/client/__init__.py'
2026-04-09T21:17:40,941   adding 'galaxy/tool_util/client/landing.py'
2026-04-09T21:17:40,943   adding 'galaxy/tool_util/client/staging.py'
2026-04-09T21:17:40,945   adding 'galaxy/tool_util/cwl/__init__.py'
2026-04-09T21:17:40,946   adding 'galaxy/tool_util/cwl/cwltool_deps.py'
2026-04-09T21:17:40,952   adding 'galaxy/tool_util/cwl/parser.py'
2026-04-09T21:17:40,955   adding 'galaxy/tool_util/cwl/representation.py'
2026-04-09T21:17:40,956   adding 'galaxy/tool_util/cwl/runnable.py'
2026-04-09T21:17:40,958   adding 'galaxy/tool_util/cwl/runtime_actions.py'
2026-04-09T21:17:40,959   adding 'galaxy/tool_util/cwl/schema.py'
2026-04-09T21:17:40,962   adding 'galaxy/tool_util/cwl/util.py'
2026-04-09T21:17:40,970   adding 'galaxy/tool_util/data/__init__.py'
2026-04-09T21:17:40,972   adding 'galaxy/tool_util/data/_schema.py'
2026-04-09T21:17:40,974   adding 'galaxy/tool_util/data/bundles/__init__.py'
2026-04-09T21:17:40,976   adding 'galaxy/tool_util/data/bundles/models.py'
2026-04-09T21:17:40,979   adding 'galaxy/tool_util/deps/__init__.py'
2026-04-09T21:17:40,982   adding 'galaxy/tool_util/deps/brew_exts.py'
2026-04-09T21:17:40,983   adding 'galaxy/tool_util/deps/brew_util.py'
2026-04-09T21:17:40,985   adding 'galaxy/tool_util/deps/commands.py'
2026-04-09T21:17:40,986   adding 'galaxy/tool_util/deps/conda_compat.py'
2026-04-09T21:17:40,990   adding 'galaxy/tool_util/deps/conda_util.py'
2026-04-09T21:17:40,993   adding 'galaxy/tool_util/deps/container_classes.py'
2026-04-09T21:17:40,994   adding 'galaxy/tool_util/deps/container_volumes.py'
2026-04-09T21:17:40,996   adding 'galaxy/tool_util/deps/containers.py'
2026-04-09T21:17:40,998   adding 'galaxy/tool_util/deps/dependencies.py'
2026-04-09T21:17:41,000   adding 'galaxy/tool_util/deps/docker_util.py'
2026-04-09T21:17:41,001   adding 'galaxy/tool_util/deps/dockerfiles.py'
2026-04-09T21:17:41,003   adding 'galaxy/tool_util/deps/installable.py'
2026-04-09T21:17:41,005   adding 'galaxy/tool_util/deps/requirements.py'
2026-04-09T21:17:41,007   adding 'galaxy/tool_util/deps/singularity_util.py'
2026-04-09T21:17:41,009   adding 'galaxy/tool_util/deps/views.py'
2026-04-09T21:17:41,011   adding 'galaxy/tool_util/deps/container_resolvers/__init__.py'
2026-04-09T21:17:41,013   adding 'galaxy/tool_util/deps/container_resolvers/explicit.py'
2026-04-09T21:17:41,016   adding 'galaxy/tool_util/deps/container_resolvers/mulled.py'
2026-04-09T21:17:41,018   adding 'galaxy/tool_util/deps/container_resolvers/test.py'
2026-04-09T21:17:41,019   adding 'galaxy/tool_util/deps/mulled/__init__.py'
2026-04-09T21:17:41,021   adding 'galaxy/tool_util/deps/mulled/_cli.py'
2026-04-09T21:17:41,022   adding 'galaxy/tool_util/deps/mulled/get_tests.py'
2026-04-09T21:17:41,024   adding 'galaxy/tool_util/deps/mulled/invfile.lua'
2026-04-09T21:17:41,027   adding 'galaxy/tool_util/deps/mulled/mulled_build.py'
2026-04-09T21:17:41,028   adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py'
2026-04-09T21:17:41,030   adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py'
2026-04-09T21:17:41,031   adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py'
2026-04-09T21:17:41,033   adding 'galaxy/tool_util/deps/mulled/mulled_hash.py'
2026-04-09T21:17:41,034   adding 'galaxy/tool_util/deps/mulled/mulled_list.py'
2026-04-09T21:17:41,036   adding 'galaxy/tool_util/deps/mulled/mulled_search.py'
2026-04-09T21:17:41,038   adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py'
2026-04-09T21:17:41,041   adding 'galaxy/tool_util/deps/mulled/util.py'
2026-04-09T21:17:41,044   adding 'galaxy/tool_util/deps/resolvers/__init__.py'
2026-04-09T21:17:41,045   adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py'
2026-04-09T21:17:41,047   adding 'galaxy/tool_util/deps/resolvers/conda.py'
2026-04-09T21:17:41,049   adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml'
2026-04-09T21:17:41,050   adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py'
2026-04-09T21:17:41,052   adding 'galaxy/tool_util/deps/resolvers/homebrew.py'
2026-04-09T21:17:41,053   adding 'galaxy/tool_util/deps/resolvers/lmod.py'
2026-04-09T21:17:41,055   adding 'galaxy/tool_util/deps/resolvers/modules.py'
2026-04-09T21:17:41,056   adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py'
2026-04-09T21:17:41,058   adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py'
2026-04-09T21:17:41,059   adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py'
2026-04-09T21:17:41,061   adding 'galaxy/tool_util/linters/__init__.py'
2026-04-09T21:17:41,063   adding 'galaxy/tool_util/linters/_util.py'
2026-04-09T21:17:41,064   adding 'galaxy/tool_util/linters/citations.py'
2026-04-09T21:17:41,065   adding 'galaxy/tool_util/linters/command.py'
2026-04-09T21:17:41,067   adding 'galaxy/tool_util/linters/cwl.py'
2026-04-09T21:17:41,068   adding 'galaxy/tool_util/linters/datatypes.py'
2026-04-09T21:17:41,079   adding 'galaxy/tool_util/linters/datatypes_conf.xml.sample'
2026-04-09T21:17:41,082   adding 'galaxy/tool_util/linters/general.py'
2026-04-09T21:17:41,083   adding 'galaxy/tool_util/linters/help.py'
2026-04-09T21:17:41,088   adding 'galaxy/tool_util/linters/inputs.py'
2026-04-09T21:17:41,090   adding 'galaxy/tool_util/linters/output.py'
2026-04-09T21:17:41,091   adding 'galaxy/tool_util/linters/required_files.py'
2026-04-09T21:17:41,092   adding 'galaxy/tool_util/linters/stdio.py'
2026-04-09T21:17:41,095   adding 'galaxy/tool_util/linters/tests.py'
2026-04-09T21:17:41,097   adding 'galaxy/tool_util/linters/xml_order.py'
2026-04-09T21:17:41,098   adding 'galaxy/tool_util/linters/xsd.py'
2026-04-09T21:17:41,100   adding 'galaxy/tool_util/locations/__init__.py'
2026-04-09T21:17:41,101   adding 'galaxy/tool_util/locations/dockstore.py'
2026-04-09T21:17:41,102   adding 'galaxy/tool_util/locations/file.py'
2026-04-09T21:17:41,103   adding 'galaxy/tool_util/locations/http.py'
2026-04-09T21:17:41,105   adding 'galaxy/tool_util/ontologies/__init__.py'
2026-04-09T21:17:41,111   adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv'
2026-04-09T21:17:41,112   adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv'
2026-04-09T21:17:41,113   adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv'
2026-04-09T21:17:41,114   adding 'galaxy/tool_util/ontologies/ontology_data.py'
2026-04-09T21:17:41,117   adding 'galaxy/tool_util/parameters/__init__.py'
2026-04-09T21:17:41,119   adding 'galaxy/tool_util/parameters/case.py'
2026-04-09T21:17:41,121   adding 'galaxy/tool_util/parameters/convert.py'
2026-04-09T21:17:41,123   adding 'galaxy/tool_util/parameters/factory.py'
2026-04-09T21:17:41,125   adding 'galaxy/tool_util/parameters/json.py'
2026-04-09T21:17:41,126   adding 'galaxy/tool_util/parameters/model_validation.py'
2026-04-09T21:17:41,127   adding 'galaxy/tool_util/parameters/state.py'
2026-04-09T21:17:41,129   adding 'galaxy/tool_util/parameters/visitor.py'
2026-04-09T21:17:41,131   adding 'galaxy/tool_util/parameters/scripts/__init__.py'
2026-04-09T21:17:41,132   adding 'galaxy/tool_util/parameters/scripts/validate_test_cases.py'
2026-04-09T21:17:41,134   adding 'galaxy/tool_util/parser/__init__.py'
2026-04-09T21:17:41,135   adding 'galaxy/tool_util/parser/cwl.py'
2026-04-09T21:17:41,137   adding 'galaxy/tool_util/parser/factory.py'
2026-04-09T21:17:41,141   adding 'galaxy/tool_util/parser/interface.py'
2026-04-09T21:17:41,144   adding 'galaxy/tool_util/parser/output_actions.py'
2026-04-09T21:17:41,145   adding 'galaxy/tool_util/parser/output_collection_def.py'
2026-04-09T21:17:41,148   adding 'galaxy/tool_util/parser/output_objects.py'
2026-04-09T21:17:41,150   adding 'galaxy/tool_util/parser/parameter_validators.py'
2026-04-09T21:17:41,151   adding 'galaxy/tool_util/parser/stdio.py'
2026-04-09T21:17:41,153   adding 'galaxy/tool_util/parser/util.py'
2026-04-09T21:17:41,161   adding 'galaxy/tool_util/parser/xml.py'
2026-04-09T21:17:41,164   adding 'galaxy/tool_util/parser/yaml.py'
2026-04-09T21:17:41,165   adding 'galaxy/tool_util/toolbox/__init__.py'
2026-04-09T21:17:41,174   adding 'galaxy/tool_util/toolbox/base.py'
2026-04-09T21:17:41,176   adding 'galaxy/tool_util/toolbox/integrated_panel.py'
2026-04-09T21:17:41,178   adding 'galaxy/tool_util/toolbox/panel.py'
2026-04-09T21:17:41,180   adding 'galaxy/tool_util/toolbox/parser.py'
2026-04-09T21:17:41,181   adding 'galaxy/tool_util/toolbox/watcher.py'
2026-04-09T21:17:41,183   adding 'galaxy/tool_util/toolbox/filters/__init__.py'
2026-04-09T21:17:41,185   adding 'galaxy/tool_util/toolbox/filters/examples.py.sample'
2026-04-09T21:17:41,186   adding 'galaxy/tool_util/toolbox/lineages/__init__.py'
2026-04-09T21:17:41,188   adding 'galaxy/tool_util/toolbox/lineages/factory.py'
2026-04-09T21:17:41,189   adding 'galaxy/tool_util/toolbox/lineages/interface.py'
2026-04-09T21:17:41,191   adding 'galaxy/tool_util/toolbox/views/__init__.py'
2026-04-09T21:17:41,192   adding 'galaxy/tool_util/toolbox/views/definitions.py'
2026-04-09T21:17:41,194   adding 'galaxy/tool_util/toolbox/views/edam.py'
2026-04-09T21:17:41,195   adding 'galaxy/tool_util/toolbox/views/interface.py'
2026-04-09T21:17:41,196   adding 'galaxy/tool_util/toolbox/views/sources.py'
2026-04-09T21:17:41,198   adding 'galaxy/tool_util/toolbox/views/static.py'
2026-04-09T21:17:41,200   adding 'galaxy/tool_util/unittest_utils/__init__.py'
2026-04-09T21:17:41,201   adding 'galaxy/tool_util/unittest_utils/interactor.py'
2026-04-09T21:17:41,202   adding 'galaxy/tool_util/unittest_utils/parameters.py'
2026-04-09T21:17:41,204   adding 'galaxy/tool_util/unittest_utils/sample_data.py'
2026-04-09T21:17:41,206   adding 'galaxy/tool_util/upgrade/__init__.py'
2026-04-09T21:17:41,208   adding 'galaxy/tool_util/upgrade/script.py'
2026-04-09T21:17:41,209   adding 'galaxy/tool_util/upgrade/upgrade_codes.json'
2026-04-09T21:17:41,213   adding 'galaxy/tool_util/verify/__init__.py'
2026-04-09T21:17:41,215   adding 'galaxy/tool_util/verify/_types.py'
2026-04-09T21:17:41,217   adding 'galaxy/tool_util/verify/codegen.py'
2026-04-09T21:17:41,228   adding 'galaxy/tool_util/verify/interactor.py'
2026-04-09T21:17:41,232   adding 'galaxy/tool_util/verify/parse.py'
2026-04-09T21:17:41,235   adding 'galaxy/tool_util/verify/script.py'
2026-04-09T21:17:41,236   adding 'galaxy/tool_util/verify/test_config.sample.yml'
2026-04-09T21:17:41,238   adding 'galaxy/tool_util/verify/test_data.py'
2026-04-09T21:17:41,239   adding 'galaxy/tool_util/verify/wait.py'
2026-04-09T21:17:41,241   adding 'galaxy/tool_util/verify/asserts/__init__.py'
2026-04-09T21:17:41,242   adding 'galaxy/tool_util/verify/asserts/_types.py'
2026-04-09T21:17:41,243   adding 'galaxy/tool_util/verify/asserts/_util.py'
2026-04-09T21:17:41,245   adding 'galaxy/tool_util/verify/asserts/archive.py'
2026-04-09T21:17:41,246   adding 'galaxy/tool_util/verify/asserts/hdf5.py'
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2026-04-09T21:17:41,251   adding 'galaxy/tool_util/verify/asserts/json.py'
2026-04-09T21:17:41,252   adding 'galaxy/tool_util/verify/asserts/size.py'
2026-04-09T21:17:41,253   adding 'galaxy/tool_util/verify/asserts/tabular.py'
2026-04-09T21:17:41,254   adding 'galaxy/tool_util/verify/asserts/text.py'
2026-04-09T21:17:41,256   adding 'galaxy/tool_util/verify/asserts/xml.py'
2026-04-09T21:17:41,258   adding 'galaxy/tool_util/xsd/LICENSE'
2026-04-09T21:17:41,259   adding 'galaxy/tool_util/xsd/README.md'
2026-04-09T21:17:41,260   adding 'galaxy/tool_util/xsd/galaxy.jxb'
2026-04-09T21:17:41,302   adding 'galaxy/tool_util/xsd/galaxy.xsd'
2026-04-09T21:17:41,308   adding 'galaxy_tool_util-26.0.1.dev0.dist-info/licenses/LICENSE'
2026-04-09T21:17:41,314   adding 'galaxy_tool_util-26.0.1.dev0.dist-info/METADATA'
2026-04-09T21:17:41,316   adding 'galaxy_tool_util-26.0.1.dev0.dist-info/WHEEL'
2026-04-09T21:17:41,317   adding 'galaxy_tool_util-26.0.1.dev0.dist-info/top_level.txt'
2026-04-09T21:17:41,320   adding 'galaxy_tool_util-26.0.1.dev0.dist-info/RECORD'
2026-04-09T21:17:41,329   removing build/bdist.linux-armv7l/wheel
2026-04-09T21:17:41,479   Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done'
2026-04-09T21:17:41,499   Created wheel for galaxy-tool-util: filename=galaxy_tool_util-26.0.1.dev0-py3-none-any.whl size=523980 sha256=55adde5ce64676ae76a52e70cb23464e9e5f2739bb1ea35eec7dabf021d7b740
2026-04-09T21:17:41,500   Stored in directory: /tmp/pip-ephem-wheel-cache-_i1uruw6/wheels/ea/34/db/9d371b1234e9af7aa2cd2d4843cb971530038d4c5ea910c425
2026-04-09T21:17:41,530 Successfully built galaxy-tool-util
2026-04-09T21:17:41,556 Removed build tracker: '/tmp/pip-build-tracker-vh5olatx'