2026-04-09T23:44:11,812 Created temporary directory: /tmp/pip-ephem-wheel-cache-47ov22b2 2026-04-09T23:44:11,814 Created temporary directory: /tmp/pip-build-tracker-pqzhckng 2026-04-09T23:44:11,815 Initialized build tracking at /tmp/pip-build-tracker-pqzhckng 2026-04-09T23:44:11,815 Created build tracker: /tmp/pip-build-tracker-pqzhckng 2026-04-09T23:44:11,816 Entered build tracker: /tmp/pip-build-tracker-pqzhckng 2026-04-09T23:44:11,816 Created temporary directory: /tmp/pip-wheel-0qpkd3xa 2026-04-09T23:44:11,820 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T23:44:11,822 Created temporary directory: /tmp/pip-ephem-wheel-cache-2iug8x33 2026-04-09T23:44:11,843 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T23:44:11,847 2 location(s) to search for versions of galaxy-app: 2026-04-09T23:44:11,847 * https://pypi.org/simple/galaxy-app/ 2026-04-09T23:44:11,847 * https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T23:44:11,847 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2026-04-09T23:44:11,848 Getting page https://pypi.org/simple/galaxy-app/ 2026-04-09T23:44:11,850 Found index url https://pypi.org/simple 2026-04-09T23:44:12,077 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2026-04-09T23:44:12,092 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from 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https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-04-09T23:44:12,150 Found link https://files.pythonhosted.org/packages/8e/84/bd6529fea5148bbbdfbcc1afb65377da833e8f2b95860e7d14c99797e940/galaxy_app-26.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.0 2026-04-09T23:44:12,150 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/53/1f/b8eb5d528c90596bdd2fb45770609f6c6fb4c629ef28b46f60479a6a23f6/galaxy_app-26.0.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10) 2026-04-09T23:44:12,151 Found link https://files.pythonhosted.org/packages/af/f3/9561be7203df96d03afc724f1e80d812b809b19f685574efe14353a4412b/galaxy_app-26.0.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.10), version: 26.0.1.dev0 2026-04-09T23:44:12,152 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 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https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,577 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,578 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,578 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,578 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,579 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-04-09T23:44:12,579 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2026-04-09T23:44:12,580 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2026-04-09T23:44:12,580 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2026-04-09T23:44:12,581 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2026-04-09T23:44:12,606 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2026-04-09T23:44:12,625 Collecting galaxy-app==26.0.0 2026-04-09T23:44:12,628 Created temporary directory: /tmp/pip-unpack-3ocoedbf 2026-04-09T23:44:12,870 Downloading galaxy_app-26.0.0.tar.gz (1.4 MB) 2026-04-09T23:44:14,512 Added galaxy-app==26.0.0 from https://files.pythonhosted.org/packages/8e/84/bd6529fea5148bbbdfbcc1afb65377da833e8f2b95860e7d14c99797e940/galaxy_app-26.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-pqzhckng' 2026-04-09T23:44:14,515 Created temporary directory: /tmp/pip-build-env-2zb1812r 2026-04-09T23:44:14,520 Installing build dependencies: started 2026-04-09T23:44:14,521 Running command pip subprocess to install build dependencies 2026-04-09T23:44:15,771 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-09T23:44:16,285 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-09T23:44:16,311 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-09T23:44:18,071 Collecting setuptools 2026-04-09T23:44:18,143 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-09T23:44:21,142 Installing collected packages: setuptools 2026-04-09T23:44:24,193 Successfully installed setuptools-82.0.1 2026-04-09T23:44:24,457 Installing build dependencies: finished with status 'done' 2026-04-09T23:44:24,464 Getting requirements to build wheel: started 2026-04-09T23:44:24,465 Running command Getting requirements to build wheel 2026-04-09T23:44:25,189 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:25,190 !! 2026-04-09T23:44:25,191 ******************************************************************************** 2026-04-09T23:44:25,191 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:25,192 `keywords = ['Galaxy']` 2026-04-09T23:44:25,193 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:25,194 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T23:44:25,195 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:25,196 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T23:44:25,196 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:25,197 configuration. 2026-04-09T23:44:25,197 ******************************************************************************** 2026-04-09T23:44:25,198 !! 2026-04-09T23:44:25,199 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:25,199 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:25,200 !! 2026-04-09T23:44:25,201 ******************************************************************************** 2026-04-09T23:44:25,202 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:25,203 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T23:44:25,204 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:25,204 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T23:44:25,206 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:25,207 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T23:44:25,207 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:25,208 configuration. 2026-04-09T23:44:25,208 ******************************************************************************** 2026-04-09T23:44:25,210 !! 2026-04-09T23:44:25,210 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:25,211 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:25,212 !! 2026-04-09T23:44:25,213 ******************************************************************************** 2026-04-09T23:44:25,214 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:25,215 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T23:44:25,216 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:25,217 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T23:44:25,218 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:25,219 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T23:44:25,219 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:25,220 configuration. 2026-04-09T23:44:25,220 ******************************************************************************** 2026-04-09T23:44:25,221 !! 2026-04-09T23:44:25,222 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:25,287 running egg_info 2026-04-09T23:44:25,294 writing galaxy_app.egg-info/PKG-INFO 2026-04-09T23:44:25,307 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-04-09T23:44:25,311 writing requirements to galaxy_app.egg-info/requires.txt 2026-04-09T23:44:25,312 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-04-09T23:44:25,408 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:25,488 reading manifest template 'MANIFEST.in' 2026-04-09T23:44:26,062 adding license file 'LICENSE' 2026-04-09T23:44:26,093 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:26,190 Getting requirements to build wheel: finished with status 'done' 2026-04-09T23:44:26,194 Created temporary directory: /tmp/pip-modern-metadata-bcnr3b0h 2026-04-09T23:44:26,196 Preparing metadata (pyproject.toml): started 2026-04-09T23:44:26,197 Running command Preparing metadata (pyproject.toml) 2026-04-09T23:44:26,817 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:26,817 !! 2026-04-09T23:44:26,818 ******************************************************************************** 2026-04-09T23:44:26,819 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:26,820 `keywords = ['Galaxy']` 2026-04-09T23:44:26,821 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:26,821 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T23:44:26,822 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:26,823 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T23:44:26,824 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:26,825 configuration. 2026-04-09T23:44:26,825 ******************************************************************************** 2026-04-09T23:44:26,826 !! 2026-04-09T23:44:26,827 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:26,827 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:26,828 !! 2026-04-09T23:44:26,829 ******************************************************************************** 2026-04-09T23:44:26,830 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:26,831 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T23:44:26,832 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:26,833 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T23:44:26,833 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:26,834 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T23:44:26,835 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:26,836 configuration. 2026-04-09T23:44:26,836 ******************************************************************************** 2026-04-09T23:44:26,837 !! 2026-04-09T23:44:26,838 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:26,838 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:26,839 !! 2026-04-09T23:44:26,840 ******************************************************************************** 2026-04-09T23:44:26,840 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:26,841 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T23:44:26,843 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:26,843 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T23:44:26,844 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:26,845 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T23:44:26,846 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:26,847 configuration. 2026-04-09T23:44:26,847 ******************************************************************************** 2026-04-09T23:44:26,848 !! 2026-04-09T23:44:26,849 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:26,908 running dist_info 2026-04-09T23:44:26,919 creating /tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info 2026-04-09T23:44:26,920 writing /tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/PKG-INFO 2026-04-09T23:44:26,932 writing dependency_links to /tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/dependency_links.txt 2026-04-09T23:44:26,936 writing requirements to /tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/requires.txt 2026-04-09T23:44:26,937 writing top-level names to /tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/top_level.txt 2026-04-09T23:44:26,938 writing manifest file '/tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:27,017 reading manifest file '/tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:27,019 reading manifest template 'MANIFEST.in' 2026-04-09T23:44:27,558 adding license file 'LICENSE' 2026-04-09T23:44:27,581 writing manifest file '/tmp/pip-modern-metadata-bcnr3b0h/galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:27,583 creating '/tmp/pip-modern-metadata-bcnr3b0h/galaxy_app-26.0.0.dist-info' 2026-04-09T23:44:27,717 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-09T23:44:27,734 Source in /tmp/pip-wheel-0qpkd3xa/galaxy-app_5040a11cb6204f9eb09ff4cd26699392 has version 26.0.0, which satisfies requirement galaxy-app==26.0.0 from https://files.pythonhosted.org/packages/8e/84/bd6529fea5148bbbdfbcc1afb65377da833e8f2b95860e7d14c99797e940/galaxy_app-26.0.0.tar.gz 2026-04-09T23:44:27,735 Removed galaxy-app==26.0.0 from https://files.pythonhosted.org/packages/8e/84/bd6529fea5148bbbdfbcc1afb65377da833e8f2b95860e7d14c99797e940/galaxy_app-26.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-pqzhckng' 2026-04-09T23:44:27,765 Created temporary directory: /tmp/pip-unpack-h9nfi83p 2026-04-09T23:44:27,766 Building wheels for collected packages: galaxy-app 2026-04-09T23:44:27,771 Created temporary directory: /tmp/pip-wheel-xmhwkgz2 2026-04-09T23:44:27,772 Destination directory: /tmp/pip-wheel-xmhwkgz2 2026-04-09T23:44:27,774 Building wheel for galaxy-app (pyproject.toml): started 2026-04-09T23:44:27,775 Running command Building wheel for galaxy-app (pyproject.toml) 2026-04-09T23:44:28,403 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:28,403 !! 2026-04-09T23:44:28,404 ******************************************************************************** 2026-04-09T23:44:28,405 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:28,406 `keywords = ['Galaxy']` 2026-04-09T23:44:28,407 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:28,407 consider this value unless `keywords` is listed as `dynamic`. 2026-04-09T23:44:28,408 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:28,410 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2026-04-09T23:44:28,410 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:28,411 configuration. 2026-04-09T23:44:28,411 ******************************************************************************** 2026-04-09T23:44:28,412 !! 2026-04-09T23:44:28,413 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:28,414 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:28,414 !! 2026-04-09T23:44:28,416 ******************************************************************************** 2026-04-09T23:44:28,416 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:28,418 `classifiers = ['Development Status :: 5 - Production/Stable', 'Environment :: Console', 'Intended Audience :: Developers', 'Natural Language :: English', 'Operating System :: POSIX', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: 3.13', 'Programming Language :: Python :: 3.14', 'Topic :: Software Development', 'Topic :: Software Development :: Code Generators', 'Topic :: Software Development :: Testing']` 2026-04-09T23:44:28,419 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:28,419 consider this value unless `classifiers` is listed as `dynamic`. 2026-04-09T23:44:28,421 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:28,422 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2026-04-09T23:44:28,423 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:28,423 configuration. 2026-04-09T23:44:28,424 ******************************************************************************** 2026-04-09T23:44:28,425 !! 2026-04-09T23:44:28,426 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:28,427 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:75: _MissingDynamic: `scripts` defined outside of `pyproject.toml` is ignored. 2026-04-09T23:44:28,427 !! 2026-04-09T23:44:28,429 ******************************************************************************** 2026-04-09T23:44:28,429 The following seems to be defined outside of `pyproject.toml`: 2026-04-09T23:44:28,430 `scripts = ['galaxy-main = galaxy.main:main', 'galaxy-dependencies = galaxy.dependencies.script:main']` 2026-04-09T23:44:28,431 According to the spec (see the link below), however, setuptools CANNOT 2026-04-09T23:44:28,432 consider this value unless `scripts` is listed as `dynamic`. 2026-04-09T23:44:28,433 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2026-04-09T23:44:28,434 To prevent this problem, you can list `scripts` under `dynamic` or alternatively 2026-04-09T23:44:28,434 remove the `[project]` table from your file and rely entirely on other means of 2026-04-09T23:44:28,435 configuration. 2026-04-09T23:44:28,435 ******************************************************************************** 2026-04-09T23:44:28,436 !! 2026-04-09T23:44:28,437 _handle_missing_dynamic(dist, project_table) 2026-04-09T23:44:28,493 running bdist_wheel 2026-04-09T23:44:28,511 running build 2026-04-09T23:44:28,512 running build_py 2026-04-09T23:44:28,518 creating build/lib/galaxy 2026-04-09T23:44:28,520 copying galaxy/queues.py -> build/lib/galaxy 2026-04-09T23:44:28,522 copying galaxy/app.py -> build/lib/galaxy 2026-04-09T23:44:28,526 copying galaxy/queue_worker.py -> build/lib/galaxy 2026-04-09T23:44:28,528 copying galaxy/main.py -> build/lib/galaxy 2026-04-09T23:44:28,531 copying galaxy/config_watchers.py -> build/lib/galaxy 2026-04-09T23:44:28,533 copying galaxy/di.py -> build/lib/galaxy 2026-04-09T23:44:28,536 copying galaxy/main_config.py -> build/lib/galaxy 2026-04-09T23:44:28,538 copying galaxy/__init__.py -> build/lib/galaxy 2026-04-09T23:44:28,539 copying galaxy/structured_app.py -> build/lib/galaxy 2026-04-09T23:44:28,542 creating build/lib/galaxy_ext 2026-04-09T23:44:28,543 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2026-04-09T23:44:28,546 creating build/lib/tool_shed_client 2026-04-09T23:44:28,547 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2026-04-09T23:44:28,549 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2026-04-09T23:44:28,551 creating build/lib/galaxy/visualization 2026-04-09T23:44:28,552 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2026-04-09T23:44:28,555 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2026-04-09T23:44:28,557 creating build/lib/galaxy/actions 2026-04-09T23:44:28,558 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2026-04-09T23:44:28,561 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2026-04-09T23:44:28,563 creating build/lib/galaxy/celery 2026-04-09T23:44:28,564 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2026-04-09T23:44:28,566 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2026-04-09T23:44:28,568 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2026-04-09T23:44:28,571 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2026-04-09T23:44:28,574 creating build/lib/galaxy/dependencies 2026-04-09T23:44:28,575 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2026-04-09T23:44:28,578 copying galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2026-04-09T23:44:28,582 creating build/lib/galaxy/managers 2026-04-09T23:44:28,583 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,585 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,588 copying galaxy/managers/headers_encryption.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,591 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,593 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,596 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,598 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,601 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,604 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,607 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,610 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,612 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,615 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,619 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,622 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,624 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,627 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,629 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,632 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,634 copying galaxy/managers/agents.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,637 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,639 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,648 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,651 copying galaxy/managers/tours.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,654 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,656 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,658 copying galaxy/managers/credentials.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,661 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,663 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,665 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,668 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,670 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,673 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,676 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,681 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,684 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,687 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,689 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,693 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,697 copying galaxy/managers/landing.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,699 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,701 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,704 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,707 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,709 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,712 copying galaxy/managers/chat.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,715 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,717 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,720 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,722 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,724 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,727 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,729 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,731 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,733 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,736 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,738 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,740 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,742 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,745 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,747 copying galaxy/managers/workflow_completion.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,749 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,752 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,755 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,757 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2026-04-09T23:44:28,762 creating build/lib/galaxy/tool_shed 2026-04-09T23:44:28,763 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2026-04-09T23:44:28,766 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2026-04-09T23:44:28,768 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2026-04-09T23:44:28,770 creating build/lib/galaxy/forms 2026-04-09T23:44:28,771 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2026-04-09T23:44:28,773 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2026-04-09T23:44:28,775 creating build/lib/galaxy/webhooks 2026-04-09T23:44:28,776 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2026-04-09T23:44:28,779 creating build/lib/galaxy/agents 2026-04-09T23:44:28,780 copying galaxy/agents/custom_tool.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,783 copying galaxy/agents/orchestrator.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,785 copying galaxy/agents/registry.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,787 copying galaxy/agents/router.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,790 copying galaxy/agents/tools.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,793 copying galaxy/agents/error_analysis.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,796 copying galaxy/agents/base.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,799 copying galaxy/agents/__init__.py -> build/lib/galaxy/agents 2026-04-09T23:44:28,801 creating build/lib/galaxy/workflow 2026-04-09T23:44:28,802 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,805 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,807 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,810 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,813 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,815 copying galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,818 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,821 copying galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,823 copying galaxy/workflow/completion_monitor.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,825 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,827 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,829 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2026-04-09T23:44:28,833 creating build/lib/galaxy/work 2026-04-09T23:44:28,834 copying galaxy/work/context.py -> build/lib/galaxy/work 2026-04-09T23:44:28,836 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2026-04-09T23:44:28,838 creating build/lib/galaxy/tools 2026-04-09T23:44:28,839 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,842 copying galaxy/tools/_types.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,844 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,846 copying galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,848 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,851 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,853 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,855 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,857 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,861 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,863 copying galaxy/tools/stock.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,865 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,868 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,870 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,872 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,879 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2026-04-09T23:44:28,882 creating build/lib/galaxy/app_unittest_utils 2026-04-09T23:44:28,883 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T23:44:28,885 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T23:44:28,887 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T23:44:28,890 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2026-04-09T23:44:28,892 creating build/lib/galaxy/jobs 2026-04-09T23:44:28,893 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,898 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,899 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,902 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,905 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,908 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,911 copying galaxy/jobs/job_destination.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,913 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,915 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2026-04-09T23:44:28,921 creating build/lib/galaxy/short_term_storage 2026-04-09T23:44:28,922 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2026-04-09T23:44:28,925 creating build/lib/galaxy/carbon_emissions 2026-04-09T23:44:28,926 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2026-04-09T23:44:28,929 creating build/lib/galaxy/authnz 2026-04-09T23:44:28,930 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,933 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,935 copying galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,937 copying galaxy/authnz/keycloak.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,939 copying galaxy/authnz/cilogon.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,941 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,944 copying galaxy/authnz/oidc_utils.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,946 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,948 copying galaxy/authnz/oidc.py -> build/lib/galaxy/authnz 2026-04-09T23:44:28,951 creating build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,951 copying galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,953 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,956 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,958 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,960 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,962 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2026-04-09T23:44:28,965 creating build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,967 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,970 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,973 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,974 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,977 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2026-04-09T23:44:28,979 creating build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,980 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,982 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,984 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,987 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,989 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:28,992 creating build/lib/galaxy/tool_shed/util 2026-04-09T23:44:28,993 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:28,995 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:28,998 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,001 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,003 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,006 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,008 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,010 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,012 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,014 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,016 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2026-04-09T23:44:29,019 creating build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,020 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,022 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,025 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,028 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,031 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:29,033 creating build/lib/galaxy/tool_shed/metadata 2026-04-09T23:44:29,034 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2026-04-09T23:44:29,038 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2026-04-09T23:44:29,039 creating build/lib/galaxy/tool_shed/tools 2026-04-09T23:44:29,040 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T23:44:29,043 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T23:44:29,045 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2026-04-09T23:44:29,047 creating build/lib/galaxy/tool_shed/unittest_utils 2026-04-09T23:44:29,048 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2026-04-09T23:44:29,051 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:29,052 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:29,053 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:29,056 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:29,057 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:29,060 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:29,063 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:29,065 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:29,066 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:29,069 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:29,071 creating build/lib/galaxy/workflow/reports 2026-04-09T23:44:29,072 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2026-04-09T23:44:29,075 creating build/lib/galaxy/workflow/completion_hooks 2026-04-09T23:44:29,076 copying galaxy/workflow/completion_hooks/notification.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T23:44:29,078 copying galaxy/workflow/completion_hooks/base.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T23:44:29,080 copying galaxy/workflow/completion_hooks/__init__.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T23:44:29,082 copying galaxy/workflow/completion_hooks/export.py -> build/lib/galaxy/workflow/completion_hooks 2026-04-09T23:44:29,085 creating build/lib/galaxy/workflow/resources 2026-04-09T23:44:29,086 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2026-04-09T23:44:29,089 creating build/lib/galaxy/workflow/schedulers 2026-04-09T23:44:29,091 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2026-04-09T23:44:29,093 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2026-04-09T23:44:29,095 creating build/lib/galaxy/workflow/refactor 2026-04-09T23:44:29,096 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2026-04-09T23:44:29,099 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2026-04-09T23:44:29,101 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2026-04-09T23:44:29,103 creating build/lib/galaxy/workflow/reports/generators 2026-04-09T23:44:29,104 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2026-04-09T23:44:29,106 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2026-04-09T23:44:29,109 creating build/lib/galaxy/tools/actions 2026-04-09T23:44:29,110 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,112 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,115 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,117 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,119 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,122 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,124 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,128 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2026-04-09T23:44:29,130 creating build/lib/galaxy/tools/filters 2026-04-09T23:44:29,131 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2026-04-09T23:44:29,134 creating build/lib/galaxy/tools/util 2026-04-09T23:44:29,135 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2026-04-09T23:44:29,137 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2026-04-09T23:44:29,140 creating build/lib/galaxy/tools/fetch 2026-04-09T23:44:29,141 copying galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2026-04-09T23:44:29,144 copying galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2026-04-09T23:44:29,146 creating build/lib/galaxy/tools/data 2026-04-09T23:44:29,147 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2026-04-09T23:44:29,150 creating build/lib/galaxy/tools/data_manager 2026-04-09T23:44:29,151 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2026-04-09T23:44:29,154 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2026-04-09T23:44:29,156 creating build/lib/galaxy/tools/search 2026-04-09T23:44:29,157 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2026-04-09T23:44:29,160 creating build/lib/galaxy/tools/expressions 2026-04-09T23:44:29,161 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2026-04-09T23:44:29,163 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2026-04-09T23:44:29,166 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2026-04-09T23:44:29,168 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2026-04-09T23:44:29,170 creating build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,171 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,173 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,176 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,179 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,181 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,184 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,187 copying galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,189 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,191 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,193 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,197 copying galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,199 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,202 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,204 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,206 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2026-04-09T23:44:29,209 creating build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:29,210 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:29,213 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:29,215 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:29,218 creating build/lib/galaxy/tools/error_reports 2026-04-09T23:44:29,219 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2026-04-09T23:44:29,221 creating build/lib/galaxy/tools/util/galaxyops 2026-04-09T23:44:29,222 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2026-04-09T23:44:29,225 creating build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,226 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,228 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,231 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,233 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,235 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,238 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,240 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,242 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,244 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2026-04-09T23:44:29,246 creating build/lib/galaxy/jobs/splitters 2026-04-09T23:44:29,247 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2026-04-09T23:44:29,250 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2026-04-09T23:44:29,252 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2026-04-09T23:44:29,254 creating build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,255 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,257 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,260 copying galaxy/jobs/runners/gcp_batch.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,263 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,266 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,269 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,271 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,275 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,277 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,281 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,283 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,286 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,288 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,290 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,294 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,296 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2026-04-09T23:44:29,299 creating build/lib/galaxy/jobs/rules 2026-04-09T23:44:29,300 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2026-04-09T23:44:29,302 creating build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,303 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,306 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,308 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,310 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,312 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,314 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,315 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,317 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2026-04-09T23:44:29,320 creating build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T23:44:29,321 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T23:44:29,323 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T23:44:29,326 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-04-09T23:44:29,328 creating build/lib/galaxy/jobs/runners/util/cli 2026-04-09T23:44:29,329 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2026-04-09T23:44:29,331 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2026-04-09T23:44:29,333 creating build/lib/galaxy/jobs/runners/util/condor 2026-04-09T23:44:29,334 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2026-04-09T23:44:29,337 creating build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:29,338 copying galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:29,341 copying galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:29,343 creating build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:29,344 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:29,347 creating build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:29,348 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:29,351 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:29,353 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:29,355 creating build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,356 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,359 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,361 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,362 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,365 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,367 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:29,369 creating build/lib/galaxy_ext/container_monitor 2026-04-09T23:44:29,370 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2026-04-09T23:44:29,372 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2026-04-09T23:44:29,374 creating build/lib/galaxy_ext/metadata 2026-04-09T23:44:29,375 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2026-04-09T23:44:29,377 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2026-04-09T23:44:29,379 creating build/lib/galaxy_ext/expressions 2026-04-09T23:44:29,380 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2026-04-09T23:44:29,382 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2026-04-09T23:44:29,384 creating build/lib/tool_shed_client/schema 2026-04-09T23:44:29,385 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2026-04-09T23:44:29,388 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2026-04-09T23:44:29,390 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2026-04-09T23:44:29,393 running egg_info 2026-04-09T23:44:29,403 writing galaxy_app.egg-info/PKG-INFO 2026-04-09T23:44:29,417 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-04-09T23:44:29,420 writing requirements to galaxy_app.egg-info/requires.txt 2026-04-09T23:44:29,421 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-04-09T23:44:29,502 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:29,552 reading manifest template 'MANIFEST.in' 2026-04-09T23:44:30,111 adding license file 'LICENSE' 2026-04-09T23:44:30,141 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-04-09T23:44:30,147 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2026-04-09T23:44:30,147 !! 2026-04-09T23:44:30,149 ******************************************************************************** 2026-04-09T23:44:30,149 ############################ 2026-04-09T23:44:30,150 # Package would be ignored # 2026-04-09T23:44:30,150 ############################ 2026-04-09T23:44:30,151 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2026-04-09T23:44:30,151 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,152 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,153 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2026-04-09T23:44:30,154 to the `packages` configuration field. 2026-04-09T23:44:30,155 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,156 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,157 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,159 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,160 If you don't want 'galaxy.tools.bundled' to be distributed and are 2026-04-09T23:44:30,160 already explicitly excluding 'galaxy.tools.bundled' via 2026-04-09T23:44:30,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,161 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,161 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,162 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,164 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,165 even if it does not contain any `.py` files. 2026-04-09T23:44:30,165 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,166 directory, all directories are treated like packages. 2026-04-09T23:44:30,166 ******************************************************************************** 2026-04-09T23:44:30,167 !! 2026-04-09T23:44:30,167 check.warn(importable) 2026-04-09T23:44:30,168 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2026-04-09T23:44:30,168 !! 2026-04-09T23:44:30,169 ******************************************************************************** 2026-04-09T23:44:30,170 ############################ 2026-04-09T23:44:30,170 # Package would be ignored # 2026-04-09T23:44:30,171 ############################ 2026-04-09T23:44:30,172 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2026-04-09T23:44:30,172 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,173 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,174 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2026-04-09T23:44:30,175 to the `packages` configuration field. 2026-04-09T23:44:30,176 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,177 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,178 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,179 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,180 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2026-04-09T23:44:30,181 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2026-04-09T23:44:30,181 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,183 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,184 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,187 even if it does not contain any `.py` files. 2026-04-09T23:44:30,188 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,188 directory, all directories are treated like packages. 2026-04-09T23:44:30,189 ******************************************************************************** 2026-04-09T23:44:30,190 !! 2026-04-09T23:44:30,191 check.warn(importable) 2026-04-09T23:44:30,191 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2026-04-09T23:44:30,192 !! 2026-04-09T23:44:30,192 ******************************************************************************** 2026-04-09T23:44:30,193 ############################ 2026-04-09T23:44:30,193 # Package would be ignored # 2026-04-09T23:44:30,194 ############################ 2026-04-09T23:44:30,194 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2026-04-09T23:44:30,195 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,195 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,196 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2026-04-09T23:44:30,196 to the `packages` configuration field. 2026-04-09T23:44:30,197 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,198 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,199 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,201 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2026-04-09T23:44:30,201 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2026-04-09T23:44:30,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,203 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,204 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,205 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,208 even if it does not contain any `.py` files. 2026-04-09T23:44:30,208 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,209 directory, all directories are treated like packages. 2026-04-09T23:44:30,210 ******************************************************************************** 2026-04-09T23:44:30,211 !! 2026-04-09T23:44:30,211 check.warn(importable) 2026-04-09T23:44:30,212 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2026-04-09T23:44:30,213 !! 2026-04-09T23:44:30,214 ******************************************************************************** 2026-04-09T23:44:30,214 ############################ 2026-04-09T23:44:30,215 # Package would be ignored # 2026-04-09T23:44:30,216 ############################ 2026-04-09T23:44:30,216 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2026-04-09T23:44:30,217 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,218 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,218 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2026-04-09T23:44:30,219 to the `packages` configuration field. 2026-04-09T23:44:30,220 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,222 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,223 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,224 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2026-04-09T23:44:30,225 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2026-04-09T23:44:30,225 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,226 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,227 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,230 even if it does not contain any `.py` files. 2026-04-09T23:44:30,231 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,231 directory, all directories are treated like packages. 2026-04-09T23:44:30,232 ******************************************************************************** 2026-04-09T23:44:30,233 !! 2026-04-09T23:44:30,233 check.warn(importable) 2026-04-09T23:44:30,234 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2026-04-09T23:44:30,234 !! 2026-04-09T23:44:30,235 ******************************************************************************** 2026-04-09T23:44:30,236 ############################ 2026-04-09T23:44:30,237 # Package would be ignored # 2026-04-09T23:44:30,237 ############################ 2026-04-09T23:44:30,238 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2026-04-09T23:44:30,238 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,239 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,239 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2026-04-09T23:44:30,240 to the `packages` configuration field. 2026-04-09T23:44:30,241 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,241 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,242 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,243 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,245 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2026-04-09T23:44:30,246 already explicitly excluding 'galaxy.tools.bundled.extract' via 2026-04-09T23:44:30,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,247 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,248 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,251 even if it does not contain any `.py` files. 2026-04-09T23:44:30,251 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,252 directory, all directories are treated like packages. 2026-04-09T23:44:30,252 ******************************************************************************** 2026-04-09T23:44:30,253 !! 2026-04-09T23:44:30,253 check.warn(importable) 2026-04-09T23:44:30,254 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2026-04-09T23:44:30,254 !! 2026-04-09T23:44:30,255 ******************************************************************************** 2026-04-09T23:44:30,256 ############################ 2026-04-09T23:44:30,256 # Package would be ignored # 2026-04-09T23:44:30,257 ############################ 2026-04-09T23:44:30,257 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2026-04-09T23:44:30,257 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,258 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,259 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2026-04-09T23:44:30,259 to the `packages` configuration field. 2026-04-09T23:44:30,260 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,261 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,262 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,264 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2026-04-09T23:44:30,265 already explicitly excluding 'galaxy.tools.bundled.filters' via 2026-04-09T23:44:30,265 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,266 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,267 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,268 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,270 even if it does not contain any `.py` files. 2026-04-09T23:44:30,271 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,272 directory, all directories are treated like packages. 2026-04-09T23:44:30,272 ******************************************************************************** 2026-04-09T23:44:30,274 !! 2026-04-09T23:44:30,274 check.warn(importable) 2026-04-09T23:44:30,275 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2026-04-09T23:44:30,275 !! 2026-04-09T23:44:30,276 ******************************************************************************** 2026-04-09T23:44:30,277 ############################ 2026-04-09T23:44:30,277 # Package would be ignored # 2026-04-09T23:44:30,278 ############################ 2026-04-09T23:44:30,278 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2026-04-09T23:44:30,279 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,279 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,280 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2026-04-09T23:44:30,280 to the `packages` configuration field. 2026-04-09T23:44:30,281 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,282 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,283 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,284 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,285 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2026-04-09T23:44:30,285 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2026-04-09T23:44:30,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,286 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,286 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,287 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,290 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,290 even if it does not contain any `.py` files. 2026-04-09T23:44:30,291 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,291 directory, all directories are treated like packages. 2026-04-09T23:44:30,292 ******************************************************************************** 2026-04-09T23:44:30,293 !! 2026-04-09T23:44:30,293 check.warn(importable) 2026-04-09T23:44:30,294 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2026-04-09T23:44:30,294 !! 2026-04-09T23:44:30,295 ******************************************************************************** 2026-04-09T23:44:30,296 ############################ 2026-04-09T23:44:30,296 # Package would be ignored # 2026-04-09T23:44:30,297 ############################ 2026-04-09T23:44:30,297 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2026-04-09T23:44:30,298 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,299 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,299 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2026-04-09T23:44:30,300 to the `packages` configuration field. 2026-04-09T23:44:30,301 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,302 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,303 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,304 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,305 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2026-04-09T23:44:30,306 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2026-04-09T23:44:30,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,307 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,308 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,311 even if it does not contain any `.py` files. 2026-04-09T23:44:30,311 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,312 directory, all directories are treated like packages. 2026-04-09T23:44:30,312 ******************************************************************************** 2026-04-09T23:44:30,313 !! 2026-04-09T23:44:30,313 check.warn(importable) 2026-04-09T23:44:30,314 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2026-04-09T23:44:30,314 !! 2026-04-09T23:44:30,315 ******************************************************************************** 2026-04-09T23:44:30,316 ############################ 2026-04-09T23:44:30,316 # Package would be ignored # 2026-04-09T23:44:30,317 ############################ 2026-04-09T23:44:30,317 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2026-04-09T23:44:30,318 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,319 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,319 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2026-04-09T23:44:30,320 to the `packages` configuration field. 2026-04-09T23:44:30,321 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,321 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,322 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,323 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,325 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2026-04-09T23:44:30,325 already explicitly excluding 'galaxy.tools.bundled.maf' via 2026-04-09T23:44:30,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,327 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,327 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,328 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,331 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,331 even if it does not contain any `.py` files. 2026-04-09T23:44:30,332 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,332 directory, all directories are treated like packages. 2026-04-09T23:44:30,333 ******************************************************************************** 2026-04-09T23:44:30,334 !! 2026-04-09T23:44:30,334 check.warn(importable) 2026-04-09T23:44:30,334 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2026-04-09T23:44:30,335 !! 2026-04-09T23:44:30,336 ******************************************************************************** 2026-04-09T23:44:30,336 ############################ 2026-04-09T23:44:30,337 # Package would be ignored # 2026-04-09T23:44:30,337 ############################ 2026-04-09T23:44:30,338 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2026-04-09T23:44:30,338 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,339 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,340 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2026-04-09T23:44:30,340 to the `packages` configuration field. 2026-04-09T23:44:30,341 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,342 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,343 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,345 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2026-04-09T23:44:30,346 already explicitly excluding 'galaxy.tools.bundled.meme' via 2026-04-09T23:44:30,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,347 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,347 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,348 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,349 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,351 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,351 even if it does not contain any `.py` files. 2026-04-09T23:44:30,352 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,352 directory, all directories are treated like packages. 2026-04-09T23:44:30,353 ******************************************************************************** 2026-04-09T23:44:30,354 !! 2026-04-09T23:44:30,354 check.warn(importable) 2026-04-09T23:44:30,355 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2026-04-09T23:44:30,355 !! 2026-04-09T23:44:30,356 ******************************************************************************** 2026-04-09T23:44:30,357 ############################ 2026-04-09T23:44:30,357 # Package would be ignored # 2026-04-09T23:44:30,358 ############################ 2026-04-09T23:44:30,358 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2026-04-09T23:44:30,359 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,360 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,360 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2026-04-09T23:44:30,361 to the `packages` configuration field. 2026-04-09T23:44:30,362 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,363 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,363 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,364 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,365 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,366 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2026-04-09T23:44:30,366 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2026-04-09T23:44:30,367 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,367 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,368 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,369 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,370 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,371 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,371 even if it does not contain any `.py` files. 2026-04-09T23:44:30,372 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,372 directory, all directories are treated like packages. 2026-04-09T23:44:30,373 ******************************************************************************** 2026-04-09T23:44:30,374 !! 2026-04-09T23:44:30,374 check.warn(importable) 2026-04-09T23:44:30,375 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2026-04-09T23:44:30,375 !! 2026-04-09T23:44:30,376 ******************************************************************************** 2026-04-09T23:44:30,377 ############################ 2026-04-09T23:44:30,378 # Package would be ignored # 2026-04-09T23:44:30,378 ############################ 2026-04-09T23:44:30,378 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2026-04-09T23:44:30,379 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,380 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,380 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2026-04-09T23:44:30,381 to the `packages` configuration field. 2026-04-09T23:44:30,382 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,383 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,383 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,384 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,386 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2026-04-09T23:44:30,387 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2026-04-09T23:44:30,387 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,388 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,389 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,390 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,392 even if it does not contain any `.py` files. 2026-04-09T23:44:30,393 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,393 directory, all directories are treated like packages. 2026-04-09T23:44:30,393 ******************************************************************************** 2026-04-09T23:44:30,394 !! 2026-04-09T23:44:30,395 check.warn(importable) 2026-04-09T23:44:30,395 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2026-04-09T23:44:30,395 !! 2026-04-09T23:44:30,396 ******************************************************************************** 2026-04-09T23:44:30,397 ############################ 2026-04-09T23:44:30,397 # Package would be ignored # 2026-04-09T23:44:30,398 ############################ 2026-04-09T23:44:30,398 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2026-04-09T23:44:30,399 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,400 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,400 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2026-04-09T23:44:30,401 to the `packages` configuration field. 2026-04-09T23:44:30,402 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,403 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,404 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,406 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2026-04-09T23:44:30,406 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2026-04-09T23:44:30,407 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,408 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,409 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,412 even if it does not contain any `.py` files. 2026-04-09T23:44:30,412 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,413 directory, all directories are treated like packages. 2026-04-09T23:44:30,413 ******************************************************************************** 2026-04-09T23:44:30,414 !! 2026-04-09T23:44:30,415 check.warn(importable) 2026-04-09T23:44:30,415 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2026-04-09T23:44:30,416 !! 2026-04-09T23:44:30,417 ******************************************************************************** 2026-04-09T23:44:30,417 ############################ 2026-04-09T23:44:30,418 # Package would be ignored # 2026-04-09T23:44:30,419 ############################ 2026-04-09T23:44:30,419 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2026-04-09T23:44:30,419 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,420 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,421 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2026-04-09T23:44:30,421 to the `packages` configuration field. 2026-04-09T23:44:30,422 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,422 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,423 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,424 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,425 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2026-04-09T23:44:30,426 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2026-04-09T23:44:30,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,427 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,427 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,428 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,431 even if it does not contain any `.py` files. 2026-04-09T23:44:30,432 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,432 directory, all directories are treated like packages. 2026-04-09T23:44:30,433 ******************************************************************************** 2026-04-09T23:44:30,434 !! 2026-04-09T23:44:30,434 check.warn(importable) 2026-04-09T23:44:30,434 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2026-04-09T23:44:30,435 !! 2026-04-09T23:44:30,436 ******************************************************************************** 2026-04-09T23:44:30,436 ############################ 2026-04-09T23:44:30,437 # Package would be ignored # 2026-04-09T23:44:30,437 ############################ 2026-04-09T23:44:30,438 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2026-04-09T23:44:30,438 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,439 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,440 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2026-04-09T23:44:30,440 to the `packages` configuration field. 2026-04-09T23:44:30,442 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,443 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,444 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,445 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,446 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2026-04-09T23:44:30,446 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2026-04-09T23:44:30,447 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,447 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,448 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,449 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,451 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,452 even if it does not contain any `.py` files. 2026-04-09T23:44:30,452 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,453 directory, all directories are treated like packages. 2026-04-09T23:44:30,453 ******************************************************************************** 2026-04-09T23:44:30,454 !! 2026-04-09T23:44:30,454 check.warn(importable) 2026-04-09T23:44:30,455 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2026-04-09T23:44:30,455 !! 2026-04-09T23:44:30,456 ******************************************************************************** 2026-04-09T23:44:30,457 ############################ 2026-04-09T23:44:30,457 # Package would be ignored # 2026-04-09T23:44:30,458 ############################ 2026-04-09T23:44:30,458 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2026-04-09T23:44:30,458 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,459 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,460 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2026-04-09T23:44:30,460 to the `packages` configuration field. 2026-04-09T23:44:30,461 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,462 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,463 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,466 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2026-04-09T23:44:30,466 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2026-04-09T23:44:30,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,468 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,469 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,472 even if it does not contain any `.py` files. 2026-04-09T23:44:30,472 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,473 directory, all directories are treated like packages. 2026-04-09T23:44:30,474 ******************************************************************************** 2026-04-09T23:44:30,475 !! 2026-04-09T23:44:30,475 check.warn(importable) 2026-04-09T23:44:30,475 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2026-04-09T23:44:30,476 !! 2026-04-09T23:44:30,477 ******************************************************************************** 2026-04-09T23:44:30,477 ############################ 2026-04-09T23:44:30,477 # Package would be ignored # 2026-04-09T23:44:30,478 ############################ 2026-04-09T23:44:30,478 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2026-04-09T23:44:30,479 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,480 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,480 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2026-04-09T23:44:30,481 to the `packages` configuration field. 2026-04-09T23:44:30,482 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,482 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,483 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,484 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,486 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2026-04-09T23:44:30,486 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2026-04-09T23:44:30,487 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,487 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,488 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,489 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,490 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,491 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,492 even if it does not contain any `.py` files. 2026-04-09T23:44:30,492 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,493 directory, all directories are treated like packages. 2026-04-09T23:44:30,493 ******************************************************************************** 2026-04-09T23:44:30,494 !! 2026-04-09T23:44:30,495 check.warn(importable) 2026-04-09T23:44:30,495 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2026-04-09T23:44:30,496 !! 2026-04-09T23:44:30,497 ******************************************************************************** 2026-04-09T23:44:30,497 ############################ 2026-04-09T23:44:30,498 # Package would be ignored # 2026-04-09T23:44:30,498 ############################ 2026-04-09T23:44:30,499 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2026-04-09T23:44:30,499 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,500 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,501 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2026-04-09T23:44:30,501 to the `packages` configuration field. 2026-04-09T23:44:30,502 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,503 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,504 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,506 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2026-04-09T23:44:30,506 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2026-04-09T23:44:30,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,507 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,508 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,511 even if it does not contain any `.py` files. 2026-04-09T23:44:30,511 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,512 directory, all directories are treated like packages. 2026-04-09T23:44:30,512 ******************************************************************************** 2026-04-09T23:44:30,513 !! 2026-04-09T23:44:30,514 check.warn(importable) 2026-04-09T23:44:30,514 /tmp/pip-build-env-2zb1812r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2026-04-09T23:44:30,515 !! 2026-04-09T23:44:30,516 ******************************************************************************** 2026-04-09T23:44:30,516 ############################ 2026-04-09T23:44:30,517 # Package would be ignored # 2026-04-09T23:44:30,517 ############################ 2026-04-09T23:44:30,517 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2026-04-09T23:44:30,518 but it is absent from setuptools' `packages` configuration. 2026-04-09T23:44:30,519 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-09T23:44:30,519 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2026-04-09T23:44:30,520 to the `packages` configuration field. 2026-04-09T23:44:30,521 Alternatively, you can also rely on setuptools' discovery methods 2026-04-09T23:44:30,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-09T23:44:30,522 instead of `find_packages(...)`/`find:`). 2026-04-09T23:44:30,523 You can read more about "package discovery" on setuptools documentation page: 2026-04-09T23:44:30,524 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-09T23:44:30,525 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2026-04-09T23:44:30,525 already explicitly excluding 'galaxy.tools.bundled.stats' via 2026-04-09T23:44:30,526 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-09T23:44:30,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-09T23:44:30,527 combination with a more fine grained `package-data` configuration. 2026-04-09T23:44:30,528 You can read more about "package data files" on setuptools documentation page: 2026-04-09T23:44:30,529 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-09T23:44:30,530 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-09T23:44:30,530 even if it does not contain any `.py` files. 2026-04-09T23:44:30,531 On the other hand, currently there is no concept of package data 2026-04-09T23:44:30,531 directory, all directories are treated like packages. 2026-04-09T23:44:30,532 ******************************************************************************** 2026-04-09T23:44:30,532 !! 2026-04-09T23:44:30,533 check.warn(importable) 2026-04-09T23:44:30,533 copying galaxy/py.typed -> build/lib/galaxy 2026-04-09T23:44:30,534 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2026-04-09T23:44:30,534 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2026-04-09T23:44:30,535 copying galaxy/dependencies/conditional-constraints.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,535 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,536 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,536 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,536 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,537 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,537 copying galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,538 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,538 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,539 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2026-04-09T23:44:30,539 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2026-04-09T23:44:30,540 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2026-04-09T23:44:30,540 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,541 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,541 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,542 copying galaxy/tools/convert_sample_sheet.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,542 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,543 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,544 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,544 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,544 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,545 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,545 copying galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,546 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,546 copying galaxy/tools/filter_failed_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,547 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,547 copying galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,548 copying galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,548 copying galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,549 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,550 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,551 copying galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,551 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,551 copying galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,552 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,552 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,553 copying galaxy/tools/nest_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,553 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,554 copying galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,554 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,554 copying galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,555 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,555 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,556 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2026-04-09T23:44:30,556 creating build/lib/galaxy/tools/bundled 2026-04-09T23:44:30,557 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2026-04-09T23:44:30,557 creating build/lib/galaxy/tools/bundled/data_export 2026-04-09T23:44:30,558 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2026-04-09T23:44:30,558 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2026-04-09T23:44:30,559 creating build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,559 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,560 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,560 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,561 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,561 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,562 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,562 copying galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,563 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,563 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,564 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,564 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,565 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,565 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,566 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,567 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,567 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,568 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,568 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,569 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,569 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,570 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,570 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,571 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,572 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,572 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,573 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,573 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,574 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,574 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,575 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,575 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,576 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,576 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,577 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,577 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,578 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,578 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,579 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,579 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-04-09T23:44:30,580 creating build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T23:44:30,581 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T23:44:30,581 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T23:44:30,582 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-04-09T23:44:30,582 creating build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,583 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,584 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,584 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,585 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,585 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2026-04-09T23:44:30,586 creating build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,587 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,587 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,588 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,588 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,589 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,589 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,590 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,590 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,591 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,591 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,592 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,592 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,593 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,593 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,594 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,594 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,595 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,595 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,596 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,596 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,597 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,597 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,598 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,598 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,599 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,600 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,600 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,601 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,601 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,602 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,604 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,607 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,609 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,612 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,614 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,616 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,619 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,622 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,624 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,626 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,629 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,631 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,633 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,635 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,637 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,640 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,642 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,644 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,647 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,649 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,651 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,655 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,657 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,660 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,662 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,664 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,667 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,670 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,672 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,674 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,677 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,679 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,682 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,684 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,687 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,689 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,692 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,694 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2026-04-09T23:44:30,696 creating build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,697 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,699 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,701 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,704 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,707 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,709 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,712 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,714 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,716 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:30,718 creating build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,720 copying galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,722 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,724 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,727 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,729 copying galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,732 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,734 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,737 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,740 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,742 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,744 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,747 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,749 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,752 copying galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,755 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,757 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,760 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,763 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,766 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,769 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,771 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,774 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,777 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,780 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,782 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,784 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,787 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,789 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,791 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,794 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,796 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,800 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,802 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,805 copying galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,807 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,810 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,812 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,814 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,817 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,819 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2026-04-09T23:44:30,822 creating build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,823 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,825 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,828 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,831 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,834 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,837 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,840 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,843 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,845 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,847 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,849 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,852 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,854 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,857 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,859 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,861 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,863 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,866 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,868 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,870 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,873 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,876 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,879 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,881 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,884 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,887 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,889 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,892 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,895 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,897 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,900 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,902 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,905 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,908 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2026-04-09T23:44:30,910 creating build/lib/galaxy/tools/bundled/meme 2026-04-09T23:44:30,911 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2026-04-09T23:44:30,914 creating build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,915 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,918 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,920 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,923 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,926 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,929 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,932 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:30,934 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,935 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,938 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,940 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,943 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,945 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,948 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,951 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,953 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,956 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:30,958 creating build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:30,959 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:30,961 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:30,965 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:30,968 creating build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,970 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,973 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,975 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,978 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,981 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,984 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,988 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,990 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,993 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:30,997 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,000 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,003 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,006 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,010 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,013 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,016 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,019 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,022 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,025 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,027 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,031 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,034 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,037 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,040 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,044 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:31,047 creating build/lib/galaxy/tools/bundled/plotting 2026-04-09T23:44:31,049 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T23:44:31,052 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T23:44:31,055 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2026-04-09T23:44:31,059 creating build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,061 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,064 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,067 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,071 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,074 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,078 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,081 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,085 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:31,088 creating build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,090 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,093 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,097 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,100 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,105 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:31,108 creating build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,110 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,114 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,117 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,121 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,125 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,129 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,132 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,136 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:31,140 creating build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,142 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,145 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,149 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,153 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,157 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,161 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,164 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,167 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,171 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,174 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,177 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2026-04-09T23:44:31,179 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2026-04-09T23:44:31,183 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2026-04-09T23:44:31,186 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2026-04-09T23:44:31,189 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:31,191 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:31,194 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-04-09T23:44:31,197 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:31,200 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:31,203 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:31,245 installing to build/bdist.linux-armv7l/wheel 2026-04-09T23:44:31,245 running install 2026-04-09T23:44:31,269 running install_lib 2026-04-09T23:44:31,275 creating build/bdist.linux-armv7l/wheel 2026-04-09T23:44:31,278 creating build/bdist.linux-armv7l/wheel/galaxy 2026-04-09T23:44:31,280 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,282 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,286 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2026-04-09T23:44:31,288 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2026-04-09T23:44:31,289 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,292 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,294 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,297 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,300 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,302 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-04-09T23:44:31,304 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-04-09T23:44:31,307 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2026-04-09T23:44:31,309 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T23:44:31,313 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T23:44:31,315 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T23:44:31,318 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,319 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,321 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,324 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,326 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,329 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-04-09T23:44:31,331 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T23:44:31,334 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-04-09T23:44:31,336 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-04-09T23:44:31,338 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,341 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2026-04-09T23:44:31,343 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-04-09T23:44:31,346 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-04-09T23:44:31,348 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2026-04-09T23:44:31,350 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T23:44:31,352 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T23:44:31,354 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T23:44:31,357 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-04-09T23:44:31,360 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2026-04-09T23:44:31,362 copying build/lib/galaxy/dependencies/conditional-constraints.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,364 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,366 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,368 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,370 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,373 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,375 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,377 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,379 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,382 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,384 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,386 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-04-09T23:44:31,387 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,390 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,393 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2026-04-09T23:44:31,394 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,396 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,399 copying build/lib/galaxy/managers/headers_encryption.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,402 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,404 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,406 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,409 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,411 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,414 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,416 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,418 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,421 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,424 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,427 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,430 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,432 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,434 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,436 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,438 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,440 copying build/lib/galaxy/managers/agents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,442 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,444 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,448 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,451 copying build/lib/galaxy/managers/tours.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,453 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,456 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,458 copying build/lib/galaxy/managers/credentials.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,460 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,462 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,465 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,467 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,469 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,472 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,475 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,479 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,482 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,484 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,487 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,490 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,492 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,495 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,502 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,504 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,508 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,510 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,513 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,516 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,519 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,521 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,524 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,526 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,529 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,531 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,534 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,537 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,539 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,541 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,544 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,547 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,549 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,552 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,555 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,558 copying build/lib/galaxy/managers/workflow_completion.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,560 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,563 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,567 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,570 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-04-09T23:44:31,573 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2026-04-09T23:44:31,575 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2026-04-09T23:44:31,577 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,580 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,584 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,587 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,590 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,592 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,595 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,597 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,600 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,603 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,605 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-04-09T23:44:31,608 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,609 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,612 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,614 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,618 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:31,620 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:31,622 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-04-09T23:44:31,625 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,629 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:31,630 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:31,634 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:31,636 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-04-09T23:44:31,638 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-04-09T23:44:31,641 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:31,642 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:31,645 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-04-09T23:44:31,648 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2026-04-09T23:44:31,649 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-04-09T23:44:31,653 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-04-09T23:44:31,654 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T23:44:31,656 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T23:44:31,658 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2026-04-09T23:44:31,659 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T23:44:31,662 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T23:44:31,665 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-04-09T23:44:31,667 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-04-09T23:44:31,669 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2026-04-09T23:44:31,670 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2026-04-09T23:44:31,672 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2026-04-09T23:44:31,673 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-04-09T23:44:31,676 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-04-09T23:44:31,678 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2026-04-09T23:44:31,679 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-04-09T23:44:31,681 creating build/bdist.linux-armv7l/wheel/galaxy/agents 2026-04-09T23:44:31,682 copying build/lib/galaxy/agents/custom_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,685 copying build/lib/galaxy/agents/orchestrator.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,687 copying build/lib/galaxy/agents/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,689 copying build/lib/galaxy/agents/router.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,692 copying build/lib/galaxy/agents/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,694 copying build/lib/galaxy/agents/error_analysis.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,697 copying build/lib/galaxy/agents/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,700 copying build/lib/galaxy/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-04-09T23:44:31,703 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,705 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,708 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2026-04-09T23:44:31,709 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,712 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,716 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2026-04-09T23:44:31,718 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2026-04-09T23:44:31,720 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-04-09T23:44:31,722 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-04-09T23:44:31,724 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2026-04-09T23:44:31,726 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,730 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/completion_hooks 2026-04-09T23:44:31,731 copying build/lib/galaxy/workflow/completion_hooks/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T23:44:31,734 copying build/lib/galaxy/workflow/completion_hooks/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T23:44:31,736 copying build/lib/galaxy/workflow/completion_hooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T23:44:31,739 copying build/lib/galaxy/workflow/completion_hooks/export.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-04-09T23:44:31,742 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,745 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2026-04-09T23:44:31,746 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-04-09T23:44:31,749 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-04-09T23:44:31,751 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,754 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,756 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,759 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,761 copying build/lib/galaxy/workflow/completion_monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,763 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,766 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2026-04-09T23:44:31,768 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-04-09T23:44:31,770 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-04-09T23:44:31,772 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2026-04-09T23:44:31,774 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T23:44:31,776 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T23:44:31,779 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-04-09T23:44:31,781 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,782 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-04-09T23:44:31,787 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:31,790 creating build/bdist.linux-armv7l/wheel/galaxy/work 2026-04-09T23:44:31,791 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-04-09T23:44:31,793 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-04-09T23:44:31,797 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2026-04-09T23:44:31,798 copying build/lib/galaxy/tools/nest_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,800 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,802 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,805 copying build/lib/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,807 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,810 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2026-04-09T23:44:31,811 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,813 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,816 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,819 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,821 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,824 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,826 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,830 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-04-09T23:44:31,832 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2026-04-09T23:44:31,833 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2026-04-09T23:44:31,836 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2026-04-09T23:44:31,837 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2026-04-09T23:44:31,839 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2026-04-09T23:44:31,841 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-04-09T23:44:31,843 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-04-09T23:44:31,846 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,849 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2026-04-09T23:44:31,850 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-04-09T23:44:31,852 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-04-09T23:44:31,854 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,856 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,858 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,860 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,863 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,866 copying build/lib/galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,868 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,870 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,872 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,875 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2026-04-09T23:44:31,876 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2026-04-09T23:44:31,879 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2026-04-09T23:44:31,880 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-04-09T23:44:31,882 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-04-09T23:44:31,884 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,887 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,889 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,891 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,893 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,896 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2026-04-09T23:44:31,897 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2026-04-09T23:44:31,899 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,901 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,904 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2026-04-09T23:44:31,905 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T23:44:31,907 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T23:44:31,908 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T23:44:31,910 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T23:44:31,912 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-04-09T23:44:31,914 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,917 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,919 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,922 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,924 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,926 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,929 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,931 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2026-04-09T23:44:31,932 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,934 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,937 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,939 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,942 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,945 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,948 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,949 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,952 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,954 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,959 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,961 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,964 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,967 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,969 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-04-09T23:44:31,972 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,975 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,977 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,980 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,982 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,985 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:31,988 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2026-04-09T23:44:31,989 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:31,992 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:31,994 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:31,996 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:31,998 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:32,001 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-04-09T23:44:32,003 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,005 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,007 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,010 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,013 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2026-04-09T23:44:32,015 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2026-04-09T23:44:32,017 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,020 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,022 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,026 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,029 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,031 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,033 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,035 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,038 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,040 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,042 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,044 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,046 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,048 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,051 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,053 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,054 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,057 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,059 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,062 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,064 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,067 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,069 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,072 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,074 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-04-09T23:44:32,076 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,078 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,080 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,083 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,085 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,087 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,090 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,092 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,095 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,097 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,099 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,101 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,103 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,105 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,107 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,108 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,110 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,112 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,114 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,116 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,117 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,119 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,121 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,124 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,126 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,127 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,129 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,131 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,133 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,135 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,137 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,139 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,141 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,143 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,145 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,147 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,149 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,151 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,154 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,158 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,161 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,164 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,166 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,169 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,171 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,174 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,175 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,177 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,179 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,181 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,183 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,185 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,187 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-04-09T23:44:32,189 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,190 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,193 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,195 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,197 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,200 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,202 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,205 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,207 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-04-09T23:44:32,210 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2026-04-09T23:44:32,211 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T23:44:32,213 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T23:44:32,215 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T23:44:32,217 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T23:44:32,219 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-04-09T23:44:32,221 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,222 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,225 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,227 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,229 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,231 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,233 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,235 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,237 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,239 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-04-09T23:44:32,242 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2026-04-09T23:44:32,243 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,245 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,247 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,250 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,252 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,254 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,257 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,259 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,261 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,263 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,265 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-04-09T23:44:32,267 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2026-04-09T23:44:32,268 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T23:44:32,270 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T23:44:32,272 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-04-09T23:44:32,274 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:32,275 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:32,278 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:32,280 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-04-09T23:44:32,282 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2026-04-09T23:44:32,283 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T23:44:32,287 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T23:44:32,289 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-04-09T23:44:32,291 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2026-04-09T23:44:32,292 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2026-04-09T23:44:32,296 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,297 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,299 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,301 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,303 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,305 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-04-09T23:44:32,308 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2026-04-09T23:44:32,309 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,311 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,313 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,314 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,316 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,319 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,320 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,322 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,324 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,326 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,327 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,329 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,331 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,333 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,334 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,336 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,338 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,340 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,341 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,343 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,345 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,347 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,349 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,351 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,353 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,355 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,357 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,359 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,360 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,362 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,364 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,366 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,368 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,370 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,372 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,374 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,375 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,377 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,378 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-04-09T23:44:32,381 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,382 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,384 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,386 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,388 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,390 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,392 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,395 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,396 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-04-09T23:44:32,399 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2026-04-09T23:44:32,400 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-04-09T23:44:32,402 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-04-09T23:44:32,404 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,405 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,408 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,410 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,413 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,414 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,417 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,419 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-04-09T23:44:32,421 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,422 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,424 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,426 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,428 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,429 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,431 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,433 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,435 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,437 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,439 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,441 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,443 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,445 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,447 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,449 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,451 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,453 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,455 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,457 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,459 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,462 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,463 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,465 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,467 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,469 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-04-09T23:44:32,471 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2026-04-09T23:44:32,473 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2026-04-09T23:44:32,474 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,476 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,478 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,480 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,482 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,484 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,486 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,488 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,490 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,492 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,494 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,496 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,498 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,500 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,502 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,504 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,505 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,507 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,510 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,512 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,514 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,516 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,518 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,520 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,521 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,524 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,526 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,528 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,531 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,533 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,535 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,537 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,539 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,541 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,543 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,545 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,547 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,549 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,551 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,553 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-04-09T23:44:32,555 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2026-04-09T23:44:32,557 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,558 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,561 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,562 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,565 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,566 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,568 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,570 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,572 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,575 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,578 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,580 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,583 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,586 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,589 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,591 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,594 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,597 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,600 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,603 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,605 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,608 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,610 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,613 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,615 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,618 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,621 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,623 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,626 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,629 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,631 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,634 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,636 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,639 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-04-09T23:44:32,643 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,651 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,655 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2026-04-09T23:44:32,657 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,658 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,661 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,663 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,666 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,669 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,672 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,674 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,677 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,679 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-04-09T23:44:32,681 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2026-04-09T23:44:32,684 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,687 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,690 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,693 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,695 copying build/lib/galaxy/tools/convert_sample_sheet.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,698 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,701 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-04-09T23:44:32,704 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2026-04-09T23:44:32,706 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T23:44:32,709 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T23:44:32,712 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T23:44:32,715 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-04-09T23:44:32,717 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2026-04-09T23:44:32,718 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,723 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,726 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,729 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,732 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,737 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2026-04-09T23:44:32,739 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T23:44:32,742 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T23:44:32,745 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-04-09T23:44:32,748 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2026-04-09T23:44:32,749 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,752 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,756 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2026-04-09T23:44:32,758 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,765 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2026-04-09T23:44:32,767 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:32,769 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:32,772 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:32,774 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-04-09T23:44:32,777 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-04-09T23:44:32,780 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,782 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,784 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,787 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,790 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,793 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,796 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-04-09T23:44:32,798 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-04-09T23:44:32,801 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2026-04-09T23:44:32,803 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2026-04-09T23:44:32,806 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:32,808 copying build/lib/galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:32,811 copying build/lib/galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-04-09T23:44:32,814 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,817 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,819 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,822 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,825 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,828 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2026-04-09T23:44:32,830 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T23:44:32,833 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T23:44:32,835 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T23:44:32,838 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-04-09T23:44:32,841 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,843 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-04-09T23:44:32,846 copying build/lib/galaxy/jobs/runners/gcp_batch.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,850 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,853 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,858 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2026-04-09T23:44:32,859 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T23:44:32,863 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T23:44:32,866 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-04-09T23:44:32,868 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,872 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,876 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,878 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,882 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,885 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,887 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,890 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,893 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,896 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,899 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-04-09T23:44:32,902 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,905 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2026-04-09T23:44:32,907 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2026-04-09T23:44:32,909 copying build/lib/galaxy/jobs/job_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,911 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,913 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-04-09T23:44:32,920 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2026-04-09T23:44:32,921 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-04-09T23:44:32,924 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:32,927 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2026-04-09T23:44:32,928 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-04-09T23:44:32,931 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-04-09T23:44:32,933 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-04-09T23:44:32,936 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2026-04-09T23:44:32,938 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,941 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,943 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,945 copying build/lib/galaxy/authnz/keycloak.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,947 copying build/lib/galaxy/authnz/cilogon.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,949 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,953 copying build/lib/galaxy/authnz/oidc_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,955 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,957 copying build/lib/galaxy/authnz/oidc.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-04-09T23:44:32,960 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2026-04-09T23:44:32,962 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2026-04-09T23:44:32,964 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-04-09T23:44:32,966 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-04-09T23:44:32,968 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2026-04-09T23:44:32,970 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-04-09T23:44:32,972 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-04-09T23:44:32,974 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-04-09T23:44:32,976 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2026-04-09T23:44:32,978 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-04-09T23:44:32,980 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-04-09T23:44:32,982 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-04-09T23:44:32,984 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2026-04-09T23:44:32,986 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T23:44:32,988 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T23:44:32,990 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2026-04-09T23:44:32,992 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T23:44:32,995 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T23:44:32,997 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-04-09T23:44:33,000 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-04-09T23:44:33,001 running install_egg_info 2026-04-09T23:44:33,007 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-26.0.0-py3.11.egg-info 2026-04-09T23:44:33,021 running install_scripts 2026-04-09T23:44:33,034 creating build/bdist.linux-armv7l/wheel/galaxy_app-26.0.0.dist-info/WHEEL 2026-04-09T23:44:33,037 creating '/tmp/pip-wheel-xmhwkgz2/.tmp-7_61mjcl/galaxy_app-26.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-09T23:44:33,040 adding 'galaxy/__init__.py' 2026-04-09T23:44:33,046 adding 'galaxy/app.py' 2026-04-09T23:44:33,049 adding 'galaxy/config_watchers.py' 2026-04-09T23:44:33,051 adding 'galaxy/di.py' 2026-04-09T23:44:33,053 adding 'galaxy/main.py' 2026-04-09T23:44:33,055 adding 'galaxy/main_config.py' 2026-04-09T23:44:33,056 adding 'galaxy/py.typed' 2026-04-09T23:44:33,059 adding 'galaxy/queue_worker.py' 2026-04-09T23:44:33,061 adding 'galaxy/queues.py' 2026-04-09T23:44:33,063 adding 'galaxy/structured_app.py' 2026-04-09T23:44:33,065 adding 'galaxy/actions/__init__.py' 2026-04-09T23:44:33,068 adding 'galaxy/actions/library.py' 2026-04-09T23:44:33,071 adding 'galaxy/agents/__init__.py' 2026-04-09T23:44:33,075 adding 'galaxy/agents/base.py' 2026-04-09T23:44:33,077 adding 'galaxy/agents/custom_tool.py' 2026-04-09T23:44:33,080 adding 'galaxy/agents/error_analysis.py' 2026-04-09T23:44:33,082 adding 'galaxy/agents/orchestrator.py' 2026-04-09T23:44:33,084 adding 'galaxy/agents/registry.py' 2026-04-09T23:44:33,087 adding 'galaxy/agents/router.py' 2026-04-09T23:44:33,091 adding 'galaxy/agents/tools.py' 2026-04-09T23:44:33,093 adding 'galaxy/app_unittest_utils/__init__.py' 2026-04-09T23:44:33,096 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2026-04-09T23:44:33,098 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2026-04-09T23:44:33,100 adding 'galaxy/app_unittest_utils/tools_support.py' 2026-04-09T23:44:33,102 adding 'galaxy/authnz/__init__.py' 2026-04-09T23:44:33,104 adding 'galaxy/authnz/cilogon.py' 2026-04-09T23:44:33,106 adding 'galaxy/authnz/keycloak.py' 2026-04-09T23:44:33,108 adding 'galaxy/authnz/managers.py' 2026-04-09T23:44:33,110 adding 'galaxy/authnz/oidc.py' 2026-04-09T23:44:33,112 adding 'galaxy/authnz/oidc_utils.py' 2026-04-09T23:44:33,118 adding 'galaxy/authnz/psa_authnz.py' 2026-04-09T23:44:33,120 adding 'galaxy/authnz/tapis.py' 2026-04-09T23:44:33,122 adding 'galaxy/authnz/util.py' 2026-04-09T23:44:33,124 adding 'galaxy/carbon_emissions/__init__.py' 2026-04-09T23:44:33,126 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2026-04-09T23:44:33,129 adding 'galaxy/celery/__init__.py' 2026-04-09T23:44:33,131 adding 'galaxy/celery/_serialization.py' 2026-04-09T23:44:33,133 adding 'galaxy/celery/base_task.py' 2026-04-09T23:44:33,136 adding 'galaxy/celery/tasks.py' 2026-04-09T23:44:33,140 adding 'galaxy/dependencies/__init__.py' 2026-04-09T23:44:33,141 adding 'galaxy/dependencies/conditional-constraints.txt' 2026-04-09T23:44:33,143 adding 'galaxy/dependencies/conditional-requirements.txt' 2026-04-09T23:44:33,145 adding 'galaxy/dependencies/dev-requirements.txt' 2026-04-09T23:44:33,147 adding 'galaxy/dependencies/lint-requirements.txt' 2026-04-09T23:44:33,148 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2026-04-09T23:44:33,150 adding 'galaxy/dependencies/pinned-requirements.txt' 2026-04-09T23:44:33,152 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2026-04-09T23:44:33,154 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2026-04-09T23:44:33,156 adding 'galaxy/dependencies/script.py' 2026-04-09T23:44:33,158 adding 'galaxy/dependencies/update.sh' 2026-04-09T23:44:33,159 adding 'galaxy/dependencies/update_lint_requirements.sh' 2026-04-09T23:44:33,161 adding 'galaxy/forms/__init__.py' 2026-04-09T23:44:33,163 adding 'galaxy/forms/forms.py' 2026-04-09T23:44:33,181 adding 'galaxy/jobs/__init__.py' 2026-04-09T23:44:33,185 adding 'galaxy/jobs/command_factory.py' 2026-04-09T23:44:33,193 adding 'galaxy/jobs/dynamic_tool_destination.py' 2026-04-09T23:44:33,201 adding 'galaxy/jobs/handler.py' 2026-04-09T23:44:33,203 adding 'galaxy/jobs/job_destination.py' 2026-04-09T23:44:33,205 adding 'galaxy/jobs/manager.py' 2026-04-09T23:44:33,207 adding 'galaxy/jobs/mapper.py' 2026-04-09T23:44:33,210 adding 'galaxy/jobs/rule_helper.py' 2026-04-09T23:44:33,211 adding 'galaxy/jobs/stock_rules.py' 2026-04-09T23:44:33,213 adding 'galaxy/jobs/rules/__init__.py' 2026-04-09T23:44:33,220 adding 'galaxy/jobs/runners/__init__.py' 2026-04-09T23:44:33,223 adding 'galaxy/jobs/runners/aws.py' 2026-04-09T23:44:33,226 adding 'galaxy/jobs/runners/chronos.py' 2026-04-09T23:44:33,229 adding 'galaxy/jobs/runners/cli.py' 2026-04-09T23:44:33,231 adding 'galaxy/jobs/runners/condor.py' 2026-04-09T23:44:33,235 adding 'galaxy/jobs/runners/drmaa.py' 2026-04-09T23:44:33,239 adding 'galaxy/jobs/runners/gcp_batch.py' 2026-04-09T23:44:33,242 adding 'galaxy/jobs/runners/godocker.py' 2026-04-09T23:44:33,249 adding 'galaxy/jobs/runners/kubernetes.py' 2026-04-09T23:44:33,252 adding 'galaxy/jobs/runners/local.py' 2026-04-09T23:44:33,255 adding 'galaxy/jobs/runners/pbs.py' 2026-04-09T23:44:33,263 adding 'galaxy/jobs/runners/pulsar.py' 2026-04-09T23:44:33,266 adding 'galaxy/jobs/runners/slurm.py' 2026-04-09T23:44:33,267 adding 'galaxy/jobs/runners/state_handler_factory.py' 2026-04-09T23:44:33,270 adding 'galaxy/jobs/runners/tasks.py' 2026-04-09T23:44:33,274 adding 'galaxy/jobs/runners/univa.py' 2026-04-09T23:44:33,277 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2026-04-09T23:44:33,279 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2026-04-09T23:44:33,281 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2026-04-09T23:44:33,283 adding 'galaxy/jobs/runners/util/__init__.py' 2026-04-09T23:44:33,285 adding 'galaxy/jobs/runners/util/env.py' 2026-04-09T23:44:33,286 adding 'galaxy/jobs/runners/util/external.py' 2026-04-09T23:44:33,288 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2026-04-09T23:44:33,290 adding 'galaxy/jobs/runners/util/kill.py' 2026-04-09T23:44:33,292 adding 'galaxy/jobs/runners/util/process_groups.py' 2026-04-09T23:44:33,294 adding 'galaxy/jobs/runners/util/pykube_util.py' 2026-04-09T23:44:33,296 adding 'galaxy/jobs/runners/util/sudo.py' 2026-04-09T23:44:33,298 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2026-04-09T23:44:33,299 adding 'galaxy/jobs/runners/util/cli/factory.py' 2026-04-09T23:44:33,302 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2026-04-09T23:44:33,304 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2026-04-09T23:44:33,305 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2026-04-09T23:44:33,307 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2026-04-09T23:44:33,309 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2026-04-09T23:44:33,311 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2026-04-09T23:44:33,313 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2026-04-09T23:44:33,315 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2026-04-09T23:44:33,317 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2026-04-09T23:44:33,319 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2026-04-09T23:44:33,321 adding 'galaxy/jobs/runners/util/gcp_batch/__init__.py' 2026-04-09T23:44:33,323 adding 'galaxy/jobs/runners/util/gcp_batch/helpers.py' 2026-04-09T23:44:33,326 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2026-04-09T23:44:33,327 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2026-04-09T23:44:33,329 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2026-04-09T23:44:33,331 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2026-04-09T23:44:33,333 adding 'galaxy/jobs/splitters/__init__.py' 2026-04-09T23:44:33,334 adding 'galaxy/jobs/splitters/basic.py' 2026-04-09T23:44:33,336 adding 'galaxy/jobs/splitters/multi.py' 2026-04-09T23:44:33,339 adding 'galaxy/managers/__init__.py' 2026-04-09T23:44:33,341 adding 'galaxy/managers/_config_templates.py' 2026-04-09T23:44:33,343 adding 'galaxy/managers/agents.py' 2026-04-09T23:44:33,344 adding 'galaxy/managers/annotatable.py' 2026-04-09T23:44:33,346 adding 'galaxy/managers/api_keys.py' 2026-04-09T23:44:33,353 adding 'galaxy/managers/base.py' 2026-04-09T23:44:33,355 adding 'galaxy/managers/chat.py' 2026-04-09T23:44:33,357 adding 'galaxy/managers/citations.py' 2026-04-09T23:44:33,361 adding 'galaxy/managers/collections.py' 2026-04-09T23:44:33,364 adding 'galaxy/managers/collections_util.py' 2026-04-09T23:44:33,366 adding 'galaxy/managers/configuration.py' 2026-04-09T23:44:33,368 adding 'galaxy/managers/context.py' 2026-04-09T23:44:33,370 adding 'galaxy/managers/credentials.py' 2026-04-09T23:44:33,375 adding 'galaxy/managers/datasets.py' 2026-04-09T23:44:33,377 adding 'galaxy/managers/datatypes.py' 2026-04-09T23:44:33,379 adding 'galaxy/managers/dbkeys.py' 2026-04-09T23:44:33,380 adding 'galaxy/managers/deletable.py' 2026-04-09T23:44:33,382 adding 'galaxy/managers/display_applications.py' 2026-04-09T23:44:33,383 adding 'galaxy/managers/executables.py' 2026-04-09T23:44:33,385 adding 'galaxy/managers/export_tracker.py' 2026-04-09T23:44:33,388 adding 'galaxy/managers/file_source_instances.py' 2026-04-09T23:44:33,391 adding 'galaxy/managers/folders.py' 2026-04-09T23:44:33,393 adding 'galaxy/managers/forms.py' 2026-04-09T23:44:33,394 adding 'galaxy/managers/genomes.py' 2026-04-09T23:44:33,396 adding 'galaxy/managers/group_roles.py' 2026-04-09T23:44:33,397 adding 'galaxy/managers/group_users.py' 2026-04-09T23:44:33,399 adding 'galaxy/managers/groups.py' 2026-04-09T23:44:33,402 adding 'galaxy/managers/hdas.py' 2026-04-09T23:44:33,404 adding 'galaxy/managers/hdcas.py' 2026-04-09T23:44:33,406 adding 'galaxy/managers/headers_encryption.py' 2026-04-09T23:44:33,411 adding 'galaxy/managers/histories.py' 2026-04-09T23:44:33,415 adding 'galaxy/managers/history_contents.py' 2026-04-09T23:44:33,417 adding 'galaxy/managers/interactivetool.py' 2026-04-09T23:44:33,419 adding 'galaxy/managers/item_tags.py' 2026-04-09T23:44:33,420 adding 'galaxy/managers/job_connections.py' 2026-04-09T23:44:33,430 adding 'galaxy/managers/jobs.py' 2026-04-09T23:44:33,433 adding 'galaxy/managers/landing.py' 2026-04-09T23:44:33,434 adding 'galaxy/managers/lddas.py' 2026-04-09T23:44:33,436 adding 'galaxy/managers/libraries.py' 2026-04-09T23:44:33,438 adding 'galaxy/managers/library_datasets.py' 2026-04-09T23:44:33,449 adding 'galaxy/managers/licenses.json' 2026-04-09T23:44:33,452 adding 'galaxy/managers/licenses.py' 2026-04-09T23:44:33,453 adding 'galaxy/managers/markdown_export_base.css' 2026-04-09T23:44:33,455 adding 'galaxy/managers/markdown_parse.py' 2026-04-09T23:44:33,461 adding 'galaxy/managers/markdown_util.py' 2026-04-09T23:44:33,463 adding 'galaxy/managers/model_stores.py' 2026-04-09T23:44:33,467 adding 'galaxy/managers/notification.py' 2026-04-09T23:44:33,469 adding 'galaxy/managers/object_store_instances.py' 2026-04-09T23:44:33,472 adding 'galaxy/managers/pages.py' 2026-04-09T23:44:33,474 adding 'galaxy/managers/quotas.py' 2026-04-09T23:44:33,475 adding 'galaxy/managers/ratable.py' 2026-04-09T23:44:33,477 adding 'galaxy/managers/rbac_secured.py' 2026-04-09T23:44:33,479 adding 'galaxy/managers/remote_files.py' 2026-04-09T23:44:33,480 adding 'galaxy/managers/roles.py' 2026-04-09T23:44:33,481 adding 'galaxy/managers/secured.py' 2026-04-09T23:44:33,483 adding 'galaxy/managers/session.py' 2026-04-09T23:44:33,485 adding 'galaxy/managers/sharable.py' 2026-04-09T23:44:33,487 adding 'galaxy/managers/taggable.py' 2026-04-09T23:44:33,488 adding 'galaxy/managers/tags.py' 2026-04-09T23:44:33,490 adding 'galaxy/managers/tasks.py' 2026-04-09T23:44:33,491 adding 'galaxy/managers/tool_data.py' 2026-04-09T23:44:33,493 adding 'galaxy/managers/tools.py' 2026-04-09T23:44:33,495 adding 'galaxy/managers/tours.py' 2026-04-09T23:44:33,500 adding 'galaxy/managers/users.py' 2026-04-09T23:44:33,502 adding 'galaxy/managers/visualizations.py' 2026-04-09T23:44:33,503 adding 'galaxy/managers/workflow_completion.py' 2026-04-09T23:44:33,516 adding 'galaxy/managers/workflows.py' 2026-04-09T23:44:33,519 adding 'galaxy/short_term_storage/__init__.py' 2026-04-09T23:44:33,520 adding 'galaxy/tool_shed/__init__.py' 2026-04-09T23:44:33,522 adding 'galaxy/tool_shed/cache.py' 2026-04-09T23:44:33,523 adding 'galaxy/tool_shed/repository_type.py' 2026-04-09T23:44:33,525 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2026-04-09T23:44:33,526 adding 'galaxy/tool_shed/galaxy_install/client.py' 2026-04-09T23:44:33,531 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2026-04-09T23:44:33,536 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2026-04-09T23:44:33,538 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2026-04-09T23:44:33,540 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2026-04-09T23:44:33,542 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2026-04-09T23:44:33,543 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2026-04-09T23:44:33,547 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2026-04-09T23:44:33,549 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2026-04-09T23:44:33,551 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2026-04-09T23:44:33,554 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2026-04-09T23:44:33,556 adding 'galaxy/tool_shed/metadata/__init__.py' 2026-04-09T23:44:33,562 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2026-04-09T23:44:33,564 adding 'galaxy/tool_shed/tools/__init__.py' 2026-04-09T23:44:33,566 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2026-04-09T23:44:33,567 adding 'galaxy/tool_shed/tools/tool_validator.py' 2026-04-09T23:44:33,570 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2026-04-09T23:44:33,571 adding 'galaxy/tool_shed/util/__init__.py' 2026-04-09T23:44:33,573 adding 'galaxy/tool_shed/util/basic_util.py' 2026-04-09T23:44:33,574 adding 'galaxy/tool_shed/util/container_util.py' 2026-04-09T23:44:33,576 adding 'galaxy/tool_shed/util/dependency_display.py' 2026-04-09T23:44:33,578 adding 'galaxy/tool_shed/util/hg_util.py' 2026-04-09T23:44:33,579 adding 'galaxy/tool_shed/util/metadata_util.py' 2026-04-09T23:44:33,583 adding 'galaxy/tool_shed/util/repository_util.py' 2026-04-09T23:44:33,584 adding 'galaxy/tool_shed/util/shed_util_common.py' 2026-04-09T23:44:33,586 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2026-04-09T23:44:33,588 adding 'galaxy/tool_shed/util/tool_util.py' 2026-04-09T23:44:33,592 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2026-04-09T23:44:33,619 adding 'galaxy/tools/__init__.py' 2026-04-09T23:44:33,622 adding 'galaxy/tools/_types.py' 2026-04-09T23:44:33,624 adding 'galaxy/tools/apply_rules.xml' 2026-04-09T23:44:33,625 adding 'galaxy/tools/biotools.py' 2026-04-09T23:44:33,626 adding 'galaxy/tools/build_list.xml' 2026-04-09T23:44:33,628 adding 'galaxy/tools/build_list_1.2.0.xml' 2026-04-09T23:44:33,629 adding 'galaxy/tools/cache.py' 2026-04-09T23:44:33,631 adding 'galaxy/tools/convert_sample_sheet.xml' 2026-04-09T23:44:33,632 adding 'galaxy/tools/cross_product_flat.xml' 2026-04-09T23:44:33,633 adding 'galaxy/tools/cross_product_nested.xml' 2026-04-09T23:44:33,637 adding 'galaxy/tools/data_fetch.py' 2026-04-09T23:44:33,638 adding 'galaxy/tools/data_fetch.xml' 2026-04-09T23:44:33,640 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2026-04-09T23:44:33,642 adding 'galaxy/tools/errors.py' 2026-04-09T23:44:33,647 adding 'galaxy/tools/evaluation.py' 2026-04-09T23:44:33,649 adding 'galaxy/tools/exception_handling.py' 2026-04-09T23:44:33,653 adding 'galaxy/tools/execute.py' 2026-04-09T23:44:33,655 adding 'galaxy/tools/execution_helpers.py' 2026-04-09T23:44:33,656 adding 'galaxy/tools/extract_dataset.xml' 2026-04-09T23:44:33,658 adding 'galaxy/tools/filter_empty_collection.xml' 2026-04-09T23:44:33,659 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2026-04-09T23:44:33,660 adding 'galaxy/tools/filter_failed_collection.xml' 2026-04-09T23:44:33,662 adding 'galaxy/tools/filter_failed_collection_1.1.0.xml' 2026-04-09T23:44:33,663 adding 'galaxy/tools/filter_from_file.xml' 2026-04-09T23:44:33,665 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2026-04-09T23:44:33,666 adding 'galaxy/tools/filter_null.xml' 2026-04-09T23:44:33,667 adding 'galaxy/tools/filter_null_1.1.0.xml' 2026-04-09T23:44:33,669 adding 'galaxy/tools/flatten_collection.xml' 2026-04-09T23:44:33,671 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2026-04-09T23:44:33,672 adding 'galaxy/tools/harmonize_two_collections_list_1.0.0.xml' 2026-04-09T23:44:33,674 adding 'galaxy/tools/keep_success_collection.xml' 2026-04-09T23:44:33,675 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2026-04-09T23:44:33,677 adding 'galaxy/tools/merge_collection.xml' 2026-04-09T23:44:33,679 adding 'galaxy/tools/model_operation_macros.xml' 2026-04-09T23:44:33,681 adding 'galaxy/tools/nest_collection.xml' 2026-04-09T23:44:33,683 adding 'galaxy/tools/recommendations.py' 2026-04-09T23:44:33,685 adding 'galaxy/tools/relabel_from_file.xml' 2026-04-09T23:44:33,687 adding 'galaxy/tools/remote_tool_eval.py' 2026-04-09T23:44:33,688 adding 'galaxy/tools/repositories.py' 2026-04-09T23:44:33,690 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2026-04-09T23:44:33,691 adding 'galaxy/tools/sort_collection_list.xml' 2026-04-09T23:44:33,693 adding 'galaxy/tools/special_tools.py' 2026-04-09T23:44:33,694 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2026-04-09T23:44:33,696 adding 'galaxy/tools/stock.py' 2026-04-09T23:44:33,697 adding 'galaxy/tools/tag_collection_from_file.xml' 2026-04-09T23:44:33,699 adding 'galaxy/tools/unzip_collection.xml' 2026-04-09T23:44:33,702 adding 'galaxy/tools/wrappers.py' 2026-04-09T23:44:33,704 adding 'galaxy/tools/zip_collection.xml' 2026-04-09T23:44:33,713 adding 'galaxy/tools/actions/__init__.py' 2026-04-09T23:44:33,715 adding 'galaxy/tools/actions/data_manager.py' 2026-04-09T23:44:33,716 adding 'galaxy/tools/actions/data_source.py' 2026-04-09T23:44:33,718 adding 'galaxy/tools/actions/history_imp_exp.py' 2026-04-09T23:44:33,720 adding 'galaxy/tools/actions/metadata.py' 2026-04-09T23:44:33,721 adding 'galaxy/tools/actions/model_operations.py' 2026-04-09T23:44:33,723 adding 'galaxy/tools/actions/upload.py' 2026-04-09T23:44:33,725 adding 'galaxy/tools/actions/upload_common.py' 2026-04-09T23:44:33,727 adding 'galaxy/tools/bundled/__init__.py' 2026-04-09T23:44:33,730 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2026-04-09T23:44:33,731 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2026-04-09T23:44:33,734 adding 'galaxy/tools/bundled/data_source/__init__.py' 2026-04-09T23:44:33,735 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2026-04-09T23:44:33,736 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2026-04-09T23:44:33,737 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2026-04-09T23:44:33,738 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2026-04-09T23:44:33,740 adding 'galaxy/tools/bundled/data_source/data_source.py' 2026-04-09T23:44:33,741 adding 'galaxy/tools/bundled/data_source/diced.xml' 2026-04-09T23:44:33,742 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2026-04-09T23:44:33,744 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2026-04-09T23:44:33,745 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2026-04-09T23:44:33,746 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2026-04-09T23:44:33,748 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2026-04-09T23:44:33,749 adding 'galaxy/tools/bundled/data_source/genbank.py' 2026-04-09T23:44:33,750 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2026-04-09T23:44:33,751 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2026-04-09T23:44:33,753 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2026-04-09T23:44:33,754 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2026-04-09T23:44:33,755 adding 'galaxy/tools/bundled/data_source/import.py' 2026-04-09T23:44:33,756 adding 'galaxy/tools/bundled/data_source/import.xml' 2026-04-09T23:44:33,758 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2026-04-09T23:44:33,759 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2026-04-09T23:44:33,760 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2026-04-09T23:44:33,762 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2026-04-09T23:44:33,764 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2026-04-09T23:44:33,765 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2026-04-09T23:44:33,766 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2026-04-09T23:44:33,767 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2026-04-09T23:44:33,769 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2026-04-09T23:44:33,770 adding 'galaxy/tools/bundled/data_source/sra.xml' 2026-04-09T23:44:33,772 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2026-04-09T23:44:33,773 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2026-04-09T23:44:33,775 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2026-04-09T23:44:33,777 adding 'galaxy/tools/bundled/data_source/upload.py' 2026-04-09T23:44:33,779 adding 'galaxy/tools/bundled/data_source/upload.xml' 2026-04-09T23:44:33,781 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2026-04-09T23:44:33,782 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2026-04-09T23:44:33,783 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2026-04-09T23:44:33,784 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2026-04-09T23:44:33,785 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2026-04-09T23:44:33,787 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2026-04-09T23:44:33,789 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2026-04-09T23:44:33,790 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2026-04-09T23:44:33,792 adding 'galaxy/tools/bundled/extract/__init__.py' 2026-04-09T23:44:33,794 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2026-04-09T23:44:33,796 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2026-04-09T23:44:33,798 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2026-04-09T23:44:33,799 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 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'galaxy/visualization/data_providers/phyloviz/__init__.py' 2026-04-09T23:44:34,282 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2026-04-09T23:44:34,284 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2026-04-09T23:44:34,285 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2026-04-09T23:44:34,287 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2026-04-09T23:44:34,288 adding 'galaxy/visualization/plugins/__init__.py' 2026-04-09T23:44:34,290 adding 'galaxy/visualization/plugins/config_parser.py' 2026-04-09T23:44:34,292 adding 'galaxy/visualization/plugins/datasource_testing.py' 2026-04-09T23:44:34,293 adding 'galaxy/visualization/plugins/plugin.py' 2026-04-09T23:44:34,294 adding 'galaxy/visualization/plugins/registry.py' 2026-04-09T23:44:34,296 adding 'galaxy/visualization/plugins/resource_parser.py' 2026-04-09T23:44:34,298 adding 'galaxy/webhooks/__init__.py' 2026-04-09T23:44:34,300 adding 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'galaxy/workflow/completion_hooks/base.py' 2026-04-09T23:44:34,348 adding 'galaxy/workflow/completion_hooks/export.py' 2026-04-09T23:44:34,350 adding 'galaxy/workflow/completion_hooks/notification.py' 2026-04-09T23:44:34,352 adding 'galaxy/workflow/refactor/__init__.py' 2026-04-09T23:44:34,355 adding 'galaxy/workflow/refactor/execute.py' 2026-04-09T23:44:34,357 adding 'galaxy/workflow/refactor/schema.py' 2026-04-09T23:44:34,359 adding 'galaxy/workflow/reports/__init__.py' 2026-04-09T23:44:34,361 adding 'galaxy/workflow/reports/generators/__init__.py' 2026-04-09T23:44:34,362 adding 'galaxy/workflow/reports/generators/markdown.py' 2026-04-09T23:44:34,364 adding 'galaxy/workflow/resources/__init__.py' 2026-04-09T23:44:34,366 adding 'galaxy/workflow/resources/example.py.sample' 2026-04-09T23:44:34,367 adding 'galaxy/workflow/schedulers/__init__.py' 2026-04-09T23:44:34,369 adding 'galaxy/workflow/schedulers/core.py' 2026-04-09T23:44:34,371 adding 'galaxy_app-26.0.0.dist-info/licenses/LICENSE' 2026-04-09T23:44:34,373 adding 'galaxy_ext/__init__.py' 2026-04-09T23:44:34,374 adding 'galaxy_ext/py.typed' 2026-04-09T23:44:34,376 adding 'galaxy_ext/container_monitor/__init__.py' 2026-04-09T23:44:34,377 adding 'galaxy_ext/container_monitor/monitor.py' 2026-04-09T23:44:34,379 adding 'galaxy_ext/expressions/__init__.py' 2026-04-09T23:44:34,380 adding 'galaxy_ext/expressions/handle_job.py' 2026-04-09T23:44:34,382 adding 'galaxy_ext/metadata/__init__.py' 2026-04-09T23:44:34,383 adding 'galaxy_ext/metadata/set_metadata.py' 2026-04-09T23:44:34,384 adding 'tool_shed_client/__init__.py' 2026-04-09T23:44:34,385 adding 'tool_shed_client/py.typed' 2026-04-09T23:44:34,386 adding 'tool_shed_client/trs_util.py' 2026-04-09T23:44:34,389 adding 'tool_shed_client/schema/__init__.py' 2026-04-09T23:44:34,391 adding 'tool_shed_client/schema/trs.py' 2026-04-09T23:44:34,392 adding 'tool_shed_client/schema/trs_service_info.py' 2026-04-09T23:44:34,407 adding 'galaxy_app-26.0.0.dist-info/METADATA' 2026-04-09T23:44:34,410 adding 'galaxy_app-26.0.0.dist-info/WHEEL' 2026-04-09T23:44:34,411 adding 'galaxy_app-26.0.0.dist-info/top_level.txt' 2026-04-09T23:44:34,421 adding 'galaxy_app-26.0.0.dist-info/RECORD' 2026-04-09T23:44:34,447 removing build/bdist.linux-armv7l/wheel 2026-04-09T23:44:34,715 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2026-04-09T23:44:34,758 Created wheel for galaxy-app: filename=galaxy_app-26.0.0-py3-none-any.whl size=1668990 sha256=3321491bab9e12b390f21d17aea8ac7c9af3106990a740fdf5f64617c74515a3 2026-04-09T23:44:34,760 Stored in directory: /tmp/pip-ephem-wheel-cache-2iug8x33/wheels/f8/10/3c/8652ab7ef2a1a5dc26682774726fc3e77fbbe832cd41c23eeb 2026-04-09T23:44:34,827 Successfully built galaxy-app 2026-04-09T23:44:34,871 Removed build tracker: '/tmp/pip-build-tracker-pqzhckng'