2026-04-10T19:59:37,999 Created temporary directory: /tmp/pip-ephem-wheel-cache-j812645h 2026-04-10T19:59:38,001 Created temporary directory: /tmp/pip-build-tracker-28q27ib6 2026-04-10T19:59:38,001 Initialized build tracking at /tmp/pip-build-tracker-28q27ib6 2026-04-10T19:59:38,002 Created build tracker: /tmp/pip-build-tracker-28q27ib6 2026-04-10T19:59:38,002 Entered build tracker: /tmp/pip-build-tracker-28q27ib6 2026-04-10T19:59:38,003 Created temporary directory: /tmp/pip-wheel-b5oykn4d 2026-04-10T19:59:38,005 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-10T19:59:38,008 Created temporary directory: /tmp/pip-ephem-wheel-cache-yyoiq4e4 2026-04-10T19:59:38,029 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-10T19:59:38,033 2 location(s) to search for versions of coralme: 2026-04-10T19:59:38,033 * https://pypi.org/simple/coralme/ 2026-04-10T19:59:38,033 * https://www.piwheels.org/simple/coralme/ 2026-04-10T19:59:38,033 Fetching project page and analyzing links: https://pypi.org/simple/coralme/ 2026-04-10T19:59:38,034 Getting page https://pypi.org/simple/coralme/ 2026-04-10T19:59:38,035 Found index url https://pypi.org/simple 2026-04-10T19:59:38,261 Fetched page https://pypi.org/simple/coralme/ as application/vnd.pypi.simple.v1+json 2026-04-10T19:59:38,270 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b3/cd/5d6128384de97cd66728ffb9077a3a317b05284b8fc55ed2892abde04988/coralME-1.0.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,271 Found link https://files.pythonhosted.org/packages/31/32/3bc2eec17165d6d1ccf75a42851f2c1e54c1656e16c05c2ff70d203d9a2d/coralME-1.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0 2026-04-10T19:59:38,272 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/64/d9/437302ea3967819d104b01255c506132b78fe7d6c40e9f7b5fb1fda1471b/coralME-1.0.0.post1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,273 Found link https://files.pythonhosted.org/packages/0a/a6/69e5b9146c97f78f52ff4ae7cabce9cf6ba53af5a1437f16980d55175efb/coralme-1.0.0.post1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post1 2026-04-10T19:59:38,274 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/04/8b/c4dad0d0a44e9c73db1d04ad85c781aaa52b44036536b775a27af1cfd5d4/coralME-1.0.0.post2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,275 Found link https://files.pythonhosted.org/packages/b4/1d/9ce7e27ad95f141fabe37512ae3791a24d04932d6f538494f291a9212071/coralme-1.0.0.post2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post2 2026-04-10T19:59:38,276 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b9/ad/b75b4ee52cccd105f07480a024983ef9e047ba3d62580ff54cf6b968fd11/coralME-1.0.0.post3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,277 Found link https://files.pythonhosted.org/packages/57/b5/2bf10653857fc4ac9c8ce4f4641f93e1ba667ccacdddc8c4698ef289c827/coralme-1.0.0.post3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post3 2026-04-10T19:59:38,278 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/4e/04/d529fcbb6f321c75110be5aee42bbf9ea2e8a48c1533991fc8520039e9cf/coralME-1.1.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,279 Found link https://files.pythonhosted.org/packages/ae/02/61a2270de794f05a442da6780ef4829137667292927808e2169c577a8ee2/coralme-1.1.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.0 2026-04-10T19:59:38,280 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b3/02/b26931a4161c042cf9c734be57c701e5d76981ead5832796531510a5baa0/coralME-1.1.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,281 Found link https://files.pythonhosted.org/packages/e5/6b/9faa456a1bafe9b7e6a3f7ed85b0c863d5b2a3027b09f9e1e541d90e5d01/coralme-1.1.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.1 2026-04-10T19:59:38,281 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/2f/5b/580385e954d6fc42d8eac064daa33c0a694988dfc52da8fd5ca298e5d6b0/coralME-1.1.2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,282 Found link https://files.pythonhosted.org/packages/d9/d5/f085dc517f64026bdabe8410cfc95d8bc5898cac172b3b982cec59c1e188/coralme-1.1.2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.2 2026-04-10T19:59:38,283 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/33/71/b4cf0bf6dd4b4645c38d7b726b17542a1384a2314abee9a36b6acc35c392/coralME-1.1.3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,284 Found link https://files.pythonhosted.org/packages/67/ac/47f0c031808a891828f3b12123ea21f050ba08bd1ec205584e640ff31fcc/coralme-1.1.3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.3 2026-04-10T19:59:38,284 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/f6/18/b7e43d27132dceb7bf5e4d13d8957769d66b565b8e14687fed09fc4c1dd8/coralME-1.1.4-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,285 Found link https://files.pythonhosted.org/packages/c2/76/ef2eb4ecec6b7d25043b8ef022422f87b4f1abc4277841e75a6305038255/coralme-1.1.4.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.4 2026-04-10T19:59:38,286 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/34/25/6f2e739d39d35df071d2df2fb6a63f17783f3ed665b72c9d10fb7905351e/coralME-1.1.5-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,287 Found link https://files.pythonhosted.org/packages/c2/0d/52301c9c25ba738621b9cf7a8e086b59b06aaeaf79c840c8b166860639e4/coralme-1.1.5.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.5 2026-04-10T19:59:38,288 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/6b/6c/5a024da74985e9873476a19920176a01654af72b598b1d907c89f78d90c5/coralME-1.1.6-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,289 Found link https://files.pythonhosted.org/packages/96/06/89189c3ed663403e91f8327f84e25955352b5245a96fa5161f7eedb8f4b3/coralme-1.1.6.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.6 2026-04-10T19:59:38,290 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/32/6a/dfae77f81cd50687546994bb33f27ce9fe38fda570f0238e6f2339a2f175/coralME-1.1.7-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,291 Found link https://files.pythonhosted.org/packages/28/e4/b8069af59f572f85a8b33d89cd0c569844aeee8a280964edf25d032222ff/coralme-1.1.7.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.7 2026-04-10T19:59:38,291 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/de/5a/30d173d1c0e90dd186a08df34f8f4e7a8b7d3e8751b94e70a85171247d22/coralME-1.1.8-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,292 Found link https://files.pythonhosted.org/packages/0c/5b/88567312519cba67e30c9e9f9022dbae29836c86768d8b756facca23e9a5/coralme-1.1.8.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.8 2026-04-10T19:59:38,293 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/d5/8d/9b3f98c74bf48666afe24cd99f89218c553fc7ce4e6d48621db8b1f690e3/coralME-1.1.9-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,294 Found link https://files.pythonhosted.org/packages/f5/eb/8b47f9001cab3069c2bceeb9d52630790140f4aaed5c885422cbc14e7703/coralme-1.1.9.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.9 2026-04-10T19:59:38,295 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/39/e0/de4a154927536c3cee3b8582f2a06df5624d7376e58753fa54f9783aa861/coralME-1.1.10-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,296 Found link https://files.pythonhosted.org/packages/e3/59/3cfee49ca874953c018f0ff5b20c341763056a2af0e61b94852721b77a1b/coralme-1.1.10.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.10 2026-04-10T19:59:38,296 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/97/6f/7b724a9c979f9dd086137091ab0396a39479f068bddcc5dc983b7bde7661/coralME-1.1.11b0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,297 Found link https://files.pythonhosted.org/packages/9f/61/e5f0cc289205eef447981f8aae08abacbfa9e68c174961fbd32aee69f373/coralme-1.1.11b0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.11b0 2026-04-10T19:59:38,298 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/1b/f6/bfa563414edbeda466012779208d5f79c18b361887b8418aad92490942bf/coralME-1.1.11-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,299 Found link https://files.pythonhosted.org/packages/a1/1b/a2d103a433d17f3879aa4c2a418a8e1cb4c1f0a34567378d396dee435d5f/coralme-1.1.11.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.11 2026-04-10T19:59:38,299 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/92/d3/f5a5a0392e57a905b7312a237e1b128c4077eb86c9445d8e12a4f0fcb177/coralME-1.1.12-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,300 Found link https://files.pythonhosted.org/packages/21/26/83292611b083c6c947f47fbed76a6c7bc5419bc9333984c5f7fa1c9e5e17/coralme-1.1.12.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.12 2026-04-10T19:59:38,301 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/2f/65/15a246335164207adb2b624838e58d45106344baa9d1a9a698fb31d9370b/coralme-1.2.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,302 Found link https://files.pythonhosted.org/packages/be/2f/2cd990339a1de2de22555a3f5aca527ed4b580db63805cd95aa61ac5f835/coralme-1.2.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.0 2026-04-10T19:59:38,303 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/61/51/9067a125b063a4a50051c9328841d92e015b3c4d26b0a1340d027689d36f/coralme-1.2.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,304 Found link https://files.pythonhosted.org/packages/ee/dd/b26ccc39339a6f1f5662b7032a80ef6655761a4b8b7a1a71411cf360ac8b/coralme-1.2.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.1 2026-04-10T19:59:38,304 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/12/83/96acbe820dc00f99eb3e708b5a4b80736f2b5e80d9838f18280f911c512d/coralme-1.2.2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,306 Found link https://files.pythonhosted.org/packages/cf/fd/eee6d62fadd9c3ce0962025084c5f2cfdf6ffbc679fb0d2919acea57e3e6/coralme-1.2.2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.2 2026-04-10T19:59:38,306 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/30/52/416efd784181f84068175bab0fa077f5da97c0cf6fbc56ea6e613849df1e/coralme-1.2.3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,307 Found link https://files.pythonhosted.org/packages/4a/f6/340d346dc5b4a2cf1c007f7ba745bba644cbc7640eed3b5ae131fafa2519/coralme-1.2.3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.3 2026-04-10T19:59:38,308 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/e7/1b/db308dc64c35328dd50eee4623d86ff3cc321b9ae967ce4d2075aad16225/coralme-1.2.3.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,309 Found link https://files.pythonhosted.org/packages/dd/96/ac41c04217d595f3deadecf73273b680b877ad9fbbb063a3c8a2c3bbcc4d/coralme-1.2.3.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.3.1 2026-04-10T19:59:38,310 Fetching project page and analyzing links: https://www.piwheels.org/simple/coralme/ 2026-04-10T19:59:38,310 Getting page https://www.piwheels.org/simple/coralme/ 2026-04-10T19:59:38,311 Found index url https://www.piwheels.org/simple 2026-04-10T19:59:38,489 Fetched page https://www.piwheels.org/simple/coralme/ as text/html 2026-04-10T19:59:38,496 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.3-py3-none-any.whl#sha256=7260e66128c952a282e7cf3dcb19c5522944831f890f7d425473e4e70e4910c8 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,497 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.2-py3-none-any.whl#sha256=b516262eacbf2b24a1a98f5cd0aeb784dd4534c03cf7a2ba1856195c09d419b6 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,497 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.1-py3-none-any.whl#sha256=f0152cd0789bfa93e98328b43408e2ddc935c4e61b14c14e6f6db1b9dff680bf (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,498 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.0-py3-none-any.whl#sha256=0c611a33f20520aaa65b5f7bf0b8b92e3915da8aee16d18a3a66af1c99ed065b (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,498 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.12-py3-none-any.whl#sha256=b0f53e5378b351ef340db222bc5b0dae7a46364b6a127f64d13b0cdf8c2e7f19 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,499 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.11-py3-none-any.whl#sha256=1454651468535b43e02d673922354ae8ae7fda3d7cacb876d6a05f97e3ae1d57 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,499 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.11b0-py3-none-any.whl#sha256=0178148ead7fd08b495f3a64058503247983d2383e07a948e3e20e1eb6fc67d5 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,500 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.10-py3-none-any.whl#sha256=84a877aac430ca4b85d840e23edfafb97709622057dda1fb73ad04a221d66239 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,501 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.9-py3-none-any.whl#sha256=f0b1fdb6ee0d48aa1e79a30579b0ff80dc055810e8ab57ea9c3bf26b82cec04b (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,501 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.8-py3-none-any.whl#sha256=22260dae400fe43c74f17f556566416b99407957db51d5fc656f2e6ff80f8e2c (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,502 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.7-py3-none-any.whl#sha256=6eb8ef9d5b2ebc79781a17c204354e1f5d02bd6997beb9fecbe48f8030c80e7f (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,502 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.6-py3-none-any.whl#sha256=9cf2d6e667c30824135fdfec37543a9f31079acacd6941ee3b645f3addd9f411 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,503 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.5-py3-none-any.whl#sha256=80a00a96ba270b712b59d4630dba77be2ab436dbf9b5b3f1b3164977ddb87d86 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,503 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.4-py3-none-any.whl#sha256=973d68aabf012482a58a585f1873f157e7f2a5cee5cf20a3ce6de51f17562da2 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,504 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.3-py3-none-any.whl#sha256=f18580ee6bae137668754cc5e7f435a785960d7758a803bc9a1c9b8ec4428111 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,504 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.2-py3-none-any.whl#sha256=8a9dd173f177bbfe77c535fbc8b0257083e738ac38af5d983b2edb9b1c8af03d (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,505 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.1-py3-none-any.whl#sha256=0ac5801fbfd971cea3e25ca4b1fe93c4e671aa3c6124defd26edec31209a1a35 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,505 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.0-py3-none-any.whl#sha256=48fab225543a75001232cfa5c11c962f330f8082b8222b57b37cde40156aa73c (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,506 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post3-py3-none-any.whl#sha256=2a7524cb2590adcaf6cafe9d0ab5f117e23be674a620bb52aee42767ce2da140 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,507 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post2-py3-none-any.whl#sha256=3aa90c51300fda98a82676c82c521489145f64178c9efc2d3fb67daba9e06033 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,507 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post1-py3-none-any.whl#sha256=c013e324d5a89b8680ae4f14dd2f583a419ca4093cab14d5f01c3f075eb12d95 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,508 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0-py3-none-any.whl#sha256=97369c482c958763a4b73fcacba5460503c28762eb9a63b98e4a176aee42e308 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-04-10T19:59:38,508 Skipping link: not a file: https://www.piwheels.org/simple/coralme/ 2026-04-10T19:59:38,509 Skipping link: not a file: https://pypi.org/simple/coralme/ 2026-04-10T19:59:38,532 Given no hashes to check 1 links for project 'coralme': discarding no candidates 2026-04-10T19:59:38,552 Collecting coralme==1.2.3.1 2026-04-10T19:59:38,554 Created temporary directory: /tmp/pip-unpack-zcos_ze8 2026-04-10T19:59:38,782 Downloading coralme-1.2.3.1.tar.gz (23.8 MB) 2026-04-10T19:59:45,722 Added coralme==1.2.3.1 from https://files.pythonhosted.org/packages/dd/96/ac41c04217d595f3deadecf73273b680b877ad9fbbb063a3c8a2c3bbcc4d/coralme-1.2.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-28q27ib6' 2026-04-10T19:59:45,729 Created temporary directory: /tmp/pip-build-env-d_0t5rla 2026-04-10T19:59:45,733 Installing build dependencies: started 2026-04-10T19:59:45,734 Running command pip subprocess to install build dependencies 2026-04-10T19:59:46,863 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-10T19:59:47,312 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-10T19:59:47,335 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-10T19:59:49,103 Collecting setuptools>=61 2026-04-10T19:59:49,188 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-10T19:59:49,461 Collecting wheel 2026-04-10T19:59:49,477 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-10T19:59:49,582 Collecting versioneer[toml] 2026-04-10T19:59:49,600 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-04-10T19:59:49,786 Collecting packaging>=24.0 2026-04-10T19:59:49,804 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-10T19:59:52,811 Installing collected packages: versioneer, setuptools, packaging, wheel 2026-04-10T19:59:52,845 Creating /tmp/pip-build-env-d_0t5rla/overlay/local/bin 2026-04-10T19:59:52,847 changing mode of /tmp/pip-build-env-d_0t5rla/overlay/local/bin/versioneer to 755 2026-04-10T19:59:56,241 changing mode of /tmp/pip-build-env-d_0t5rla/overlay/local/bin/wheel to 755 2026-04-10T19:59:56,271 Successfully installed packaging-26.0 setuptools-82.0.1 versioneer-0.29 wheel-0.46.3 2026-04-10T19:59:56,553 Installing build dependencies: finished with status 'done' 2026-04-10T19:59:56,562 Getting requirements to build wheel: started 2026-04-10T19:59:56,564 Running command Getting requirements to build wheel 2026-04-10T19:59:57,242 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-10T19:59:57,242 corresp(dist, value, root_dir) 2026-04-10T19:59:57,296 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:57,297 !! 2026-04-10T19:59:57,298 ******************************************************************************** 2026-04-10T19:59:57,299 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:57,300 License :: OSI Approved :: MIT License 2026-04-10T19:59:57,301 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:57,302 ******************************************************************************** 2026-04-10T19:59:57,304 !! 2026-04-10T19:59:57,305 dist._finalize_license_expression() 2026-04-10T19:59:57,305 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:57,306 !! 2026-04-10T19:59:57,307 ******************************************************************************** 2026-04-10T19:59:57,307 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:57,308 License :: OSI Approved :: MIT License 2026-04-10T19:59:57,309 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:57,310 ******************************************************************************** 2026-04-10T19:59:57,311 !! 2026-04-10T19:59:57,312 self._finalize_license_expression() 2026-04-10T19:59:57,312 running egg_info 2026-04-10T19:59:57,313 writing coralME.egg-info/PKG-INFO 2026-04-10T19:59:57,316 writing dependency_links to coralME.egg-info/dependency_links.txt 2026-04-10T19:59:57,317 writing entry points to coralME.egg-info/entry_points.txt 2026-04-10T19:59:57,322 writing requirements to coralME.egg-info/requires.txt 2026-04-10T19:59:57,323 writing top-level names to coralME.egg-info/top_level.txt 2026-04-10T19:59:57,385 reading manifest file 'coralME.egg-info/SOURCES.txt' 2026-04-10T19:59:57,400 adding license file 'LICENSE' 2026-04-10T19:59:57,414 writing manifest file 'coralME.egg-info/SOURCES.txt' 2026-04-10T19:59:57,520 Getting requirements to build wheel: finished with status 'done' 2026-04-10T19:59:57,523 Created temporary directory: /tmp/pip-modern-metadata-7lwuyqv_ 2026-04-10T19:59:57,525 Preparing metadata (pyproject.toml): started 2026-04-10T19:59:57,527 Running command Preparing metadata (pyproject.toml) 2026-04-10T19:59:58,180 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-10T19:59:58,180 corresp(dist, value, root_dir) 2026-04-10T19:59:58,231 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:58,231 !! 2026-04-10T19:59:58,233 ******************************************************************************** 2026-04-10T19:59:58,233 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:58,234 License :: OSI Approved :: MIT License 2026-04-10T19:59:58,235 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:58,236 ******************************************************************************** 2026-04-10T19:59:58,237 !! 2026-04-10T19:59:58,238 dist._finalize_license_expression() 2026-04-10T19:59:58,238 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:58,239 !! 2026-04-10T19:59:58,240 ******************************************************************************** 2026-04-10T19:59:58,241 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:58,242 License :: OSI Approved :: MIT License 2026-04-10T19:59:58,243 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:58,244 ******************************************************************************** 2026-04-10T19:59:58,246 !! 2026-04-10T19:59:58,246 self._finalize_license_expression() 2026-04-10T19:59:58,246 running dist_info 2026-04-10T19:59:58,251 creating /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info 2026-04-10T19:59:58,252 writing /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/PKG-INFO 2026-04-10T19:59:58,256 writing dependency_links to /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/dependency_links.txt 2026-04-10T19:59:58,257 writing entry points to /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/entry_points.txt 2026-04-10T19:59:58,260 writing requirements to /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/requires.txt 2026-04-10T19:59:58,261 writing top-level names to /tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/top_level.txt 2026-04-10T19:59:58,263 writing manifest file '/tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/SOURCES.txt' 2026-04-10T19:59:58,307 reading manifest file '/tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/SOURCES.txt' 2026-04-10T19:59:58,309 adding license file 'LICENSE' 2026-04-10T19:59:58,319 writing manifest file '/tmp/pip-modern-metadata-7lwuyqv_/coralME.egg-info/SOURCES.txt' 2026-04-10T19:59:58,327 creating '/tmp/pip-modern-metadata-7lwuyqv_/coralme-1.2.3.1.dist-info' 2026-04-10T19:59:58,453 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-10T19:59:58,458 Source in /tmp/pip-wheel-b5oykn4d/coralme_52d01f55dc4c4556a97a644d24eb02ce has version 1.2.3.1, which satisfies requirement coralme==1.2.3.1 from https://files.pythonhosted.org/packages/dd/96/ac41c04217d595f3deadecf73273b680b877ad9fbbb063a3c8a2c3bbcc4d/coralme-1.2.3.1.tar.gz 2026-04-10T19:59:58,459 Removed coralme==1.2.3.1 from https://files.pythonhosted.org/packages/dd/96/ac41c04217d595f3deadecf73273b680b877ad9fbbb063a3c8a2c3bbcc4d/coralme-1.2.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-28q27ib6' 2026-04-10T19:59:58,468 Created temporary directory: /tmp/pip-unpack-ekyw54ox 2026-04-10T19:59:58,468 Building wheels for collected packages: coralme 2026-04-10T19:59:58,473 Created temporary directory: /tmp/pip-wheel-s8oubzxo 2026-04-10T19:59:58,473 Destination directory: /tmp/pip-wheel-s8oubzxo 2026-04-10T19:59:58,476 Building wheel for coralme (pyproject.toml): started 2026-04-10T19:59:58,477 Running command Building wheel for coralme (pyproject.toml) 2026-04-10T19:59:59,091 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-04-10T19:59:59,091 corresp(dist, value, root_dir) 2026-04-10T19:59:59,137 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:59,138 !! 2026-04-10T19:59:59,139 ******************************************************************************** 2026-04-10T19:59:59,140 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:59,141 License :: OSI Approved :: MIT License 2026-04-10T19:59:59,142 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:59,142 ******************************************************************************** 2026-04-10T19:59:59,144 !! 2026-04-10T19:59:59,144 dist._finalize_license_expression() 2026-04-10T19:59:59,145 /tmp/pip-build-env-d_0t5rla/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-10T19:59:59,145 !! 2026-04-10T19:59:59,147 ******************************************************************************** 2026-04-10T19:59:59,147 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-10T19:59:59,148 License :: OSI Approved :: MIT License 2026-04-10T19:59:59,150 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-10T19:59:59,150 ******************************************************************************** 2026-04-10T19:59:59,151 !! 2026-04-10T19:59:59,152 self._finalize_license_expression() 2026-04-10T19:59:59,152 running bdist_wheel 2026-04-10T19:59:59,162 running build 2026-04-10T19:59:59,163 running build_py 2026-04-10T19:59:59,171 creating build/lib/coralme 2026-04-10T19:59:59,173 copying coralme/__init__.py -> build/lib/coralme 2026-04-10T19:59:59,175 copying coralme/_version.py -> build/lib/coralme 2026-04-10T19:59:59,177 creating build/lib/coralme/util 2026-04-10T19:59:59,178 copying coralme/util/model2excel.py -> build/lib/coralme/util 2026-04-10T19:59:59,181 copying coralme/util/change_model_genes.py -> build/lib/coralme/util 2026-04-10T19:59:59,183 copying coralme/util/compare.py -> build/lib/coralme/util 2026-04-10T19:59:59,185 copying coralme/util/dogma.py -> build/lib/coralme/util 2026-04-10T19:59:59,187 copying coralme/util/building.py -> build/lib/coralme/util 2026-04-10T19:59:59,190 copying coralme/util/excel2model.py -> build/lib/coralme/util 2026-04-10T19:59:59,192 copying coralme/util/essentiality.py -> build/lib/coralme/util 2026-04-10T19:59:59,195 copying coralme/util/__init__.py -> build/lib/coralme/util 2026-04-10T19:59:59,197 copying coralme/util/flux_analysis.py -> build/lib/coralme/util 2026-04-10T19:59:59,199 copying coralme/util/massbalance.py -> build/lib/coralme/util 2026-04-10T19:59:59,201 copying coralme/util/cli.py -> build/lib/coralme/util 2026-04-10T19:59:59,204 creating build/lib/coralme/solver 2026-04-10T19:59:59,205 copying coralme/solver/solver.py -> build/lib/coralme/solver 2026-04-10T19:59:59,207 copying coralme/solver/__init__.py -> build/lib/coralme/solver 2026-04-10T19:59:59,210 creating build/lib/coralme/io 2026-04-10T19:59:59,211 copying coralme/io/json.py -> build/lib/coralme/io 2026-04-10T19:59:59,213 copying coralme/io/__init__.py -> build/lib/coralme/io 2026-04-10T19:59:59,215 copying coralme/io/dict.py -> build/lib/coralme/io 2026-04-10T19:59:59,217 copying coralme/io/pickle.py -> build/lib/coralme/io 2026-04-10T19:59:59,220 creating build/lib/coralme/builder 2026-04-10T19:59:59,221 copying coralme/builder/compartments.py -> build/lib/coralme/builder 2026-04-10T19:59:59,223 copying coralme/builder/flat_files.py -> build/lib/coralme/builder 2026-04-10T19:59:59,226 copying coralme/builder/notes.py -> build/lib/coralme/builder 2026-04-10T19:59:59,228 copying coralme/builder/curation.py -> build/lib/coralme/builder 2026-04-10T19:59:59,231 copying coralme/builder/dictionaries.py -> build/lib/coralme/builder 2026-04-10T19:59:59,234 copying coralme/builder/dna_replication.py -> build/lib/coralme/builder 2026-04-10T19:59:59,236 copying coralme/builder/homology.py -> build/lib/coralme/builder 2026-04-10T19:59:59,238 copying coralme/builder/helper_functions.py -> build/lib/coralme/builder 2026-04-10T19:59:59,241 copying coralme/builder/main.py -> build/lib/coralme/builder 2026-04-10T19:59:59,245 copying coralme/builder/transcription.py -> build/lib/coralme/builder 2026-04-10T19:59:59,247 copying coralme/builder/formulas.py -> build/lib/coralme/builder 2026-04-10T19:59:59,249 copying coralme/builder/gpr.py -> build/lib/coralme/builder 2026-04-10T19:59:59,251 copying coralme/builder/preprocess_inputs.py -> build/lib/coralme/builder 2026-04-10T19:59:59,254 copying coralme/builder/trna_charging.py -> build/lib/coralme/builder 2026-04-10T19:59:59,256 copying coralme/builder/ribosome.py -> build/lib/coralme/builder 2026-04-10T19:59:59,258 copying coralme/builder/__init__.py -> build/lib/coralme/builder 2026-04-10T19:59:59,260 copying coralme/builder/translocation.py -> build/lib/coralme/builder 2026-04-10T19:59:59,262 copying coralme/builder/organism.py -> build/lib/coralme/builder 2026-04-10T19:59:59,266 copying coralme/builder/modifications.py -> build/lib/coralme/builder 2026-04-10T19:59:59,269 copying coralme/builder/troubleshooting.py -> build/lib/coralme/builder 2026-04-10T19:59:59,271 copying coralme/builder/translation.py -> build/lib/coralme/builder 2026-04-10T19:59:59,274 creating build/lib/coralme/core 2026-04-10T19:59:59,275 copying coralme/core/optimization.py -> build/lib/coralme/core 2026-04-10T19:59:59,278 copying coralme/core/component.py -> build/lib/coralme/core 2026-04-10T19:59:59,280 copying coralme/core/__init__.py -> build/lib/coralme/core 2026-04-10T19:59:59,282 copying coralme/core/processdata.py -> build/lib/coralme/core 2026-04-10T19:59:59,284 copying coralme/core/extended_classes.py -> build/lib/coralme/core 2026-04-10T19:59:59,287 copying coralme/core/parameters.py -> build/lib/coralme/core 2026-04-10T19:59:59,289 copying coralme/core/model.py -> build/lib/coralme/core 2026-04-10T19:59:59,292 copying coralme/core/reaction.py -> build/lib/coralme/core 2026-04-10T19:59:59,319 copying coralme/_version.py -> build/lib/coralme 2026-04-10T19:59:59,326 creating build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,327 copying coralme/iJT964-ME/building_data/transcription_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,329 copying coralme/iJT964-ME/building_data/m_model.json -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,340 copying coralme/iJT964-ME/building_data/ribosome_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,342 copying coralme/iJT964-ME/building_data/metabolite_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,344 copying coralme/iJT964-ME/building_data/translocation_pathways.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,346 copying coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,348 copying coralme/iJT964-ME/building_data/complexes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,357 copying coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,359 copying coralme/iJT964-ME/building_data/reaction_matrix.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,361 copying coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,363 copying coralme/iJT964-ME/building_data/proteins.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,371 copying coralme/iJT964-ME/building_data/protein_modification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,374 copying coralme/iJT964-ME/building_data/elongation_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,376 copying coralme/iJT964-ME/building_data/special_trna_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,378 copying coralme/iJT964-ME/building_data/rna_modification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,380 copying coralme/iJT964-ME/building_data/subreaction_matrix.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,383 copying coralme/iJT964-ME/building_data/RNAs.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,386 copying coralme/iJT964-ME/building_data/termination_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,388 copying coralme/iJT964-ME/building_data/peptide_release_factors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,390 copying coralme/iJT964-ME/building_data/special_modifications.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,392 copying coralme/iJT964-ME/building_data/rna_degradosome.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,394 copying coralme/iJT964-ME/building_data/lipoprotein_precursors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,396 copying coralme/iJT964-ME/building_data/excision_machinery.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,398 copying coralme/iJT964-ME/building_data/subsystem_classification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,400 copying coralme/iJT964-ME/building_data/ribosomal_proteins.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,402 copying coralme/iJT964-ME/building_data/folding_dict.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,404 copying coralme/iJT964-ME/building_data/me_metabolites.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,407 copying coralme/iJT964-ME/building_data/cleaved_methionine.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,409 copying coralme/iJT964-ME/building_data/rho_independent.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,411 copying coralme/iJT964-ME/building_data/sequences.fasta -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,479 copying coralme/iJT964-ME/building_data/protein_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,482 copying coralme/iJT964-ME/building_data/TUs_from_biocyc.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,487 copying coralme/iJT964-ME/building_data/lipid_modifications.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,489 copying coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,494 copying coralme/iJT964-ME/building_data/reaction_median_keffs.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,497 copying coralme/iJT964-ME/building_data/initiation_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,499 copying coralme/iJT964-ME/building_data/genes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,505 copying coralme/iJT964-ME/building_data/sigma_factors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,508 copying coralme/iJT964-ME/building_data/reaction_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,510 copying coralme/iJT964-ME/building_data/helper.ipynb -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,513 copying coralme/iJT964-ME/building_data/enzyme_reaction_association.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,516 copying coralme/iJT964-ME/building_data/generic_dict.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,518 copying coralme/iJT964-ME/building_data/protein_complexes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,530 copying coralme/iJT964-ME/building_data/translocation_multipliers.txt -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,532 copying coralme/iJT964-ME/building_data/genome.gb -> build/lib/coralme/iJT964-ME/building_data 2026-04-10T19:59:59,723 copying coralme/solver/LICENSE -> build/lib/coralme/solver 2026-04-10T19:59:59,726 copying coralme/solver/MEModel-step2-iJL1678b-ME.json -> build/lib/coralme/solver 2026-04-10T20:00:00,222 creating build/lib/coralme/solver/debian 2026-04-10T20:00:00,223 copying coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,236 copying coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,246 copying coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,256 copying coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,260 copying coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,270 copying coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,278 copying coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,281 copying coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,290 copying coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,293 copying coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,296 copying coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,300 copying coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,309 copying coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,317 copying coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,326 copying coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,337 copying coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,350 copying coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,354 copying coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,358 copying coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,367 copying coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,371 copying coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,381 copying coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,391 copying coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,400 copying coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,409 copying coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,412 copying coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,420 copying coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,425 copying coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,435 copying coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,444 copying coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,448 copying coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,451 copying coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,458 copying coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,461 copying coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,469 copying coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-04-10T20:00:00,482 creating build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,483 copying coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,494 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,502 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,513 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,517 copying coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,528 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,539 copying coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,543 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,554 copying coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,558 copying coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,562 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,567 copying coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,577 copying coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,587 copying coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,599 copying coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,609 copying coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,620 copying coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,624 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,627 copying coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,638 copying coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,641 copying coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,650 copying coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,653 copying coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,667 copying coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,679 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,684 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,695 copying coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,699 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,727 copying coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,745 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,751 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,754 copying coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,761 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,807 copying coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,840 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-04-10T20:00:00,851 creating build/lib/coralme/solver/rhel 2026-04-10T20:00:00,852 copying coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,865 copying coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,876 copying coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,905 copying coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,910 copying coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,923 copying coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,930 copying coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,942 copying coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,953 copying coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,966 copying coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,971 copying coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,982 copying coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,986 copying coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:00,991 copying coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:01,006 copying coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:01,011 copying coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:01,022 copying coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:01,027 copying coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-04-10T20:00:01,038 copying coralme/io/JSONSCHEMA -> build/lib/coralme/io 2026-04-10T20:00:01,043 copying coralme/io/helper.retrocompatibility.ipynb -> build/lib/coralme/io 2026-04-10T20:00:01,057 copying coralme/builder/column_format.json -> build/lib/coralme/builder 2026-04-10T20:00:01,062 copying coralme/builder/auto_blast.sh -> build/lib/coralme/builder 2026-04-10T20:00:01,069 creating build/lib/coralme/licenses 2026-04-10T20:00:01,071 copying coralme/licenses/LICENSE-solvemepy -> build/lib/coralme/licenses 2026-04-10T20:00:01,074 copying coralme/licenses/LICENSE-cobrame -> build/lib/coralme/licenses 2026-04-10T20:00:01,076 copying coralme/licenses/LICENSE-ecolime -> build/lib/coralme/licenses 2026-04-10T20:00:01,079 creating build/lib/coralme/iJL1678b-ME 2026-04-10T20:00:01,080 copying coralme/iJL1678b-ME/BarEven_subsystem_classification.csv -> build/lib/coralme/iJL1678b-ME 2026-04-10T20:00:01,085 copying coralme/iJL1678b-ME/minimal-organism.json -> build/lib/coralme/iJL1678b-ME 2026-04-10T20:00:01,087 creating build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,089 copying coralme/iJL1678b-ME/building_data/transcription_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,091 copying coralme/iJL1678b-ME/building_data/m_model.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,124 copying coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,126 copying coralme/iJL1678b-ME/building_data/metabolite_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,128 copying coralme/iJL1678b-ME/building_data/translocation_pathways.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,130 copying coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,132 copying coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,134 copying coralme/iJL1678b-ME/building_data/m_to_me_mets.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,136 copying coralme/iJL1678b-ME/building_data/reaction_matrix.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,140 copying coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,142 copying coralme/iJL1678b-ME/building_data/proteins.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,146 copying coralme/iJL1678b-ME/building_data/protein_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,149 copying coralme/iJL1678b-ME/building_data/elongation_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,151 copying coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,153 copying coralme/iJL1678b-ME/building_data/rna_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,155 copying coralme/iJL1678b-ME/building_data/iJO1366b.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,175 copying coralme/iJL1678b-ME/building_data/subreaction_matrix.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,178 copying coralme/iJL1678b-ME/building_data/RNAs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,180 copying coralme/iJL1678b-ME/building_data/trna_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,183 copying coralme/iJL1678b-ME/building_data/termination_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,185 copying coralme/iJL1678b-ME/building_data/peptide_release_factors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,187 copying coralme/iJL1678b-ME/building_data/special_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,189 copying coralme/iJL1678b-ME/building_data/rna_degradosome.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,191 copying coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,193 copying coralme/iJL1678b-ME/building_data/excision_machinery.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,195 copying coralme/iJL1678b-ME/building_data/subsystem_classification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,197 copying coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,199 copying coralme/iJL1678b-ME/building_data/folding_dict.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,201 copying coralme/iJL1678b-ME/building_data/me_metabolites.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,204 copying coralme/iJL1678b-ME/building_data/keffs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,210 copying coralme/iJL1678b-ME/building_data/cleaved_methionine.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,212 copying coralme/iJL1678b-ME/building_data/rho_independent.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,214 copying coralme/iJL1678b-ME/building_data/protein_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,216 copying coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,221 copying coralme/iJL1678b-ME/building_data/rrna_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,223 copying coralme/iJL1678b-ME/building_data/lipid_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,225 copying coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,228 copying coralme/iJL1678b-ME/building_data/keffs.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,236 copying coralme/iJL1678b-ME/building_data/modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,238 copying coralme/iJL1678b-ME/building_data/initiation_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,240 copying coralme/iJL1678b-ME/building_data/stable_RNAs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,242 copying coralme/iJL1678b-ME/building_data/reference_tRNAs.fna -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,311 copying coralme/iJL1678b-ME/building_data/metabolites.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,315 copying coralme/iJL1678b-ME/building_data/genes.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,323 copying coralme/iJL1678b-ME/building_data/TUs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,327 copying coralme/iJL1678b-ME/building_data/sigma_factors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,329 copying coralme/iJL1678b-ME/building_data/reaction_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,332 copying coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,336 copying coralme/iJL1678b-ME/building_data/generic_dict.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,339 copying coralme/iJL1678b-ME/building_data/folding_chaperones.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,341 copying coralme/iJL1678b-ME/building_data/protein_complexes.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,345 copying coralme/iJL1678b-ME/building_data/translocation_multipliers.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,347 copying coralme/iJL1678b-ME/building_data/genome.gb -> build/lib/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:01,569 UPDATING build/lib/coralme/_version.py 2026-04-10T20:00:01,570 set build/lib/coralme/_version.py to '1.2.3.1' 2026-04-10T20:00:01,570 installing to build/bdist.linux-armv7l/wheel 2026-04-10T20:00:01,571 running install 2026-04-10T20:00:01,593 running install_lib 2026-04-10T20:00:01,599 creating build/bdist.linux-armv7l/wheel 2026-04-10T20:00:01,602 creating build/bdist.linux-armv7l/wheel/coralme 2026-04-10T20:00:01,603 creating build/bdist.linux-armv7l/wheel/coralme/util 2026-04-10T20:00:01,605 copying build/lib/coralme/util/model2excel.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,607 copying build/lib/coralme/util/change_model_genes.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,610 copying build/lib/coralme/util/compare.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,611 copying build/lib/coralme/util/dogma.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,614 copying build/lib/coralme/util/building.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,617 copying build/lib/coralme/util/excel2model.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,620 copying build/lib/coralme/util/essentiality.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,622 copying build/lib/coralme/util/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,624 copying build/lib/coralme/util/flux_analysis.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,626 copying build/lib/coralme/util/massbalance.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,628 copying build/lib/coralme/util/cli.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-04-10T20:00:01,632 creating build/bdist.linux-armv7l/wheel/coralme/iJT964-ME 2026-04-10T20:00:01,635 creating build/bdist.linux-armv7l/wheel/coralme/iJT964-ME/building_data 2026-04-10T20:00:01,636 copying build/lib/coralme/iJT964-ME/building_data/transcription_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,638 copying build/lib/coralme/iJT964-ME/building_data/m_model.json -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,648 copying build/lib/coralme/iJT964-ME/building_data/ribosome_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,650 copying build/lib/coralme/iJT964-ME/building_data/metabolite_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,652 copying build/lib/coralme/iJT964-ME/building_data/translocation_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,653 copying build/lib/coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,656 copying build/lib/coralme/iJT964-ME/building_data/complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,664 copying build/lib/coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,666 copying build/lib/coralme/iJT964-ME/building_data/reaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,668 copying build/lib/coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,670 copying build/lib/coralme/iJT964-ME/building_data/proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,679 copying build/lib/coralme/iJT964-ME/building_data/protein_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,681 copying build/lib/coralme/iJT964-ME/building_data/elongation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,683 copying build/lib/coralme/iJT964-ME/building_data/special_trna_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,685 copying build/lib/coralme/iJT964-ME/building_data/rna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,686 copying build/lib/coralme/iJT964-ME/building_data/subreaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,689 copying build/lib/coralme/iJT964-ME/building_data/RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,691 copying build/lib/coralme/iJT964-ME/building_data/termination_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,693 copying build/lib/coralme/iJT964-ME/building_data/peptide_release_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,695 copying build/lib/coralme/iJT964-ME/building_data/special_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,696 copying build/lib/coralme/iJT964-ME/building_data/rna_degradosome.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,698 copying build/lib/coralme/iJT964-ME/building_data/lipoprotein_precursors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,700 copying build/lib/coralme/iJT964-ME/building_data/excision_machinery.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,701 copying build/lib/coralme/iJT964-ME/building_data/subsystem_classification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,703 copying build/lib/coralme/iJT964-ME/building_data/ribosomal_proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,705 copying build/lib/coralme/iJT964-ME/building_data/folding_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,706 copying build/lib/coralme/iJT964-ME/building_data/me_metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,709 copying build/lib/coralme/iJT964-ME/building_data/cleaved_methionine.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,710 copying build/lib/coralme/iJT964-ME/building_data/rho_independent.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,712 copying build/lib/coralme/iJT964-ME/building_data/sequences.fasta -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,788 copying build/lib/coralme/iJT964-ME/building_data/protein_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,791 copying build/lib/coralme/iJT964-ME/building_data/TUs_from_biocyc.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,796 copying build/lib/coralme/iJT964-ME/building_data/lipid_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,798 copying build/lib/coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,804 copying build/lib/coralme/iJT964-ME/building_data/reaction_median_keffs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,807 copying build/lib/coralme/iJT964-ME/building_data/initiation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,809 copying build/lib/coralme/iJT964-ME/building_data/genes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,817 copying build/lib/coralme/iJT964-ME/building_data/sigma_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,819 copying build/lib/coralme/iJT964-ME/building_data/reaction_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,822 copying build/lib/coralme/iJT964-ME/building_data/helper.ipynb -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,824 copying build/lib/coralme/iJT964-ME/building_data/enzyme_reaction_association.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,827 copying build/lib/coralme/iJT964-ME/building_data/generic_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,830 copying build/lib/coralme/iJT964-ME/building_data/protein_complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,840 copying build/lib/coralme/iJT964-ME/building_data/translocation_multipliers.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:01,842 copying build/lib/coralme/iJT964-ME/building_data/genome.gb -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-04-10T20:00:02,040 creating build/bdist.linux-armv7l/wheel/coralme/solver 2026-04-10T20:00:02,042 creating build/bdist.linux-armv7l/wheel/coralme/solver/debian 2026-04-10T20:00:02,044 copying build/lib/coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,053 copying build/lib/coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,063 copying build/lib/coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,072 copying build/lib/coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,076 copying build/lib/coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,084 copying build/lib/coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,094 copying build/lib/coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,097 copying build/lib/coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,106 copying build/lib/coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,109 copying build/lib/coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,112 copying build/lib/coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,117 copying build/lib/coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,128 copying build/lib/coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,137 copying build/lib/coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,148 copying build/lib/coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,161 copying build/lib/coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,174 copying build/lib/coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,179 copying build/lib/coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,182 copying build/lib/coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,190 copying build/lib/coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,194 copying build/lib/coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,204 copying build/lib/coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,207 copying build/lib/coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,218 copying build/lib/coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,226 copying build/lib/coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,229 copying build/lib/coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,236 copying build/lib/coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,240 copying build/lib/coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,250 copying build/lib/coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,258 copying build/lib/coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,262 copying build/lib/coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,266 copying build/lib/coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,276 copying build/lib/coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,279 copying build/lib/coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,289 copying build/lib/coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-04-10T20:00:02,301 copying build/lib/coralme/solver/solver.py -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-04-10T20:00:02,305 creating build/bdist.linux-armv7l/wheel/coralme/solver/rhel-ubi9 2026-04-10T20:00:02,306 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,314 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,322 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,330 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,333 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,341 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,350 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,353 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,361 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,364 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,367 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,370 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,378 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,385 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,393 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,400 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,411 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,414 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,417 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,424 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,427 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,435 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,438 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,448 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,456 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,459 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,468 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,471 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,481 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,489 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,492 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,495 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,502 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,505 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,513 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-04-10T20:00:02,522 copying build/lib/coralme/solver/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-04-10T20:00:02,525 copying build/lib/coralme/solver/LICENSE -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-04-10T20:00:02,527 creating build/bdist.linux-armv7l/wheel/coralme/solver/rhel 2026-04-10T20:00:02,529 copying build/lib/coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,537 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,556 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,565 copying build/lib/coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,568 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,578 copying build/lib/coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,581 copying build/lib/coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,585 copying build/lib/coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,594 copying build/lib/coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,605 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,609 copying build/lib/coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,618 copying build/lib/coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,621 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,625 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,636 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,639 copying build/lib/coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,649 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,652 copying build/lib/coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-04-10T20:00:02,661 copying build/lib/coralme/solver/MEModel-step2-iJL1678b-ME.json -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-04-10T20:00:03,866 creating build/bdist.linux-armv7l/wheel/coralme/io 2026-04-10T20:00:03,868 copying build/lib/coralme/io/json.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,870 copying build/lib/coralme/io/JSONSCHEMA -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,873 copying build/lib/coralme/io/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,875 copying build/lib/coralme/io/helper.retrocompatibility.ipynb -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,877 copying build/lib/coralme/io/dict.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,880 copying build/lib/coralme/io/pickle.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-04-10T20:00:03,883 creating build/bdist.linux-armv7l/wheel/coralme/builder 2026-04-10T20:00:03,884 copying build/lib/coralme/builder/compartments.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,887 copying build/lib/coralme/builder/flat_files.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,890 copying build/lib/coralme/builder/notes.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,892 copying build/lib/coralme/builder/curation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,895 copying build/lib/coralme/builder/dictionaries.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,899 copying build/lib/coralme/builder/dna_replication.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,901 copying build/lib/coralme/builder/homology.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,903 copying build/lib/coralme/builder/helper_functions.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,906 copying build/lib/coralme/builder/main.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,912 copying build/lib/coralme/builder/transcription.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,914 copying build/lib/coralme/builder/formulas.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,916 copying build/lib/coralme/builder/gpr.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,919 copying build/lib/coralme/builder/preprocess_inputs.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,923 copying build/lib/coralme/builder/trna_charging.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,925 copying build/lib/coralme/builder/ribosome.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,927 copying build/lib/coralme/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,929 copying build/lib/coralme/builder/translocation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,932 copying build/lib/coralme/builder/column_format.json -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,935 copying build/lib/coralme/builder/organism.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,939 copying build/lib/coralme/builder/modifications.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,942 copying build/lib/coralme/builder/troubleshooting.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,945 copying build/lib/coralme/builder/translation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,947 copying build/lib/coralme/builder/auto_blast.sh -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-04-10T20:00:03,950 creating build/bdist.linux-armv7l/wheel/coralme/core 2026-04-10T20:00:03,951 copying build/lib/coralme/core/optimization.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,955 copying build/lib/coralme/core/component.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,957 copying build/lib/coralme/core/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,959 copying build/lib/coralme/core/processdata.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,963 copying build/lib/coralme/core/extended_classes.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,966 copying build/lib/coralme/core/parameters.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,969 copying build/lib/coralme/core/model.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,972 copying build/lib/coralme/core/reaction.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-04-10T20:00:03,977 copying build/lib/coralme/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme 2026-04-10T20:00:03,979 creating build/bdist.linux-armv7l/wheel/coralme/licenses 2026-04-10T20:00:03,980 copying build/lib/coralme/licenses/LICENSE-solvemepy -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-04-10T20:00:03,982 copying build/lib/coralme/licenses/LICENSE-cobrame -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-04-10T20:00:03,983 copying build/lib/coralme/licenses/LICENSE-ecolime -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-04-10T20:00:03,985 copying build/lib/coralme/_version.py -> build/bdist.linux-armv7l/wheel/./coralme 2026-04-10T20:00:03,987 creating build/bdist.linux-armv7l/wheel/coralme/iJL1678b-ME 2026-04-10T20:00:03,988 copying build/lib/coralme/iJL1678b-ME/BarEven_subsystem_classification.csv -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME 2026-04-10T20:00:03,991 copying build/lib/coralme/iJL1678b-ME/minimal-organism.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME 2026-04-10T20:00:03,993 creating build/bdist.linux-armv7l/wheel/coralme/iJL1678b-ME/building_data 2026-04-10T20:00:03,994 copying build/lib/coralme/iJL1678b-ME/building_data/transcription_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:03,996 copying build/lib/coralme/iJL1678b-ME/building_data/m_model.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,030 copying build/lib/coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,032 copying build/lib/coralme/iJL1678b-ME/building_data/metabolite_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,034 copying build/lib/coralme/iJL1678b-ME/building_data/translocation_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,036 copying build/lib/coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,039 copying build/lib/coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,041 copying build/lib/coralme/iJL1678b-ME/building_data/m_to_me_mets.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,043 copying build/lib/coralme/iJL1678b-ME/building_data/reaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,046 copying build/lib/coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,048 copying build/lib/coralme/iJL1678b-ME/building_data/proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,053 copying build/lib/coralme/iJL1678b-ME/building_data/protein_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,056 copying build/lib/coralme/iJL1678b-ME/building_data/elongation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,058 copying build/lib/coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,060 copying build/lib/coralme/iJL1678b-ME/building_data/rna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,062 copying build/lib/coralme/iJL1678b-ME/building_data/iJO1366b.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,091 copying build/lib/coralme/iJL1678b-ME/building_data/subreaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,093 copying build/lib/coralme/iJL1678b-ME/building_data/RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,096 copying build/lib/coralme/iJL1678b-ME/building_data/trna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,098 copying build/lib/coralme/iJL1678b-ME/building_data/termination_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,100 copying build/lib/coralme/iJL1678b-ME/building_data/peptide_release_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,101 copying build/lib/coralme/iJL1678b-ME/building_data/special_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,103 copying build/lib/coralme/iJL1678b-ME/building_data/rna_degradosome.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,105 copying build/lib/coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,106 copying build/lib/coralme/iJL1678b-ME/building_data/excision_machinery.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,108 copying build/lib/coralme/iJL1678b-ME/building_data/subsystem_classification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,110 copying build/lib/coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,111 copying build/lib/coralme/iJL1678b-ME/building_data/folding_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,113 copying build/lib/coralme/iJL1678b-ME/building_data/me_metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,115 copying build/lib/coralme/iJL1678b-ME/building_data/keffs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,122 copying build/lib/coralme/iJL1678b-ME/building_data/cleaved_methionine.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,123 copying build/lib/coralme/iJL1678b-ME/building_data/rho_independent.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,125 copying build/lib/coralme/iJL1678b-ME/building_data/protein_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,127 copying build/lib/coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,132 copying build/lib/coralme/iJL1678b-ME/building_data/rrna_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,133 copying build/lib/coralme/iJL1678b-ME/building_data/lipid_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,135 copying build/lib/coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,138 copying build/lib/coralme/iJL1678b-ME/building_data/keffs.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,146 copying build/lib/coralme/iJL1678b-ME/building_data/modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,148 copying build/lib/coralme/iJL1678b-ME/building_data/initiation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,150 copying build/lib/coralme/iJL1678b-ME/building_data/stable_RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,152 copying build/lib/coralme/iJL1678b-ME/building_data/reference_tRNAs.fna -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,225 copying build/lib/coralme/iJL1678b-ME/building_data/metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,228 copying build/lib/coralme/iJL1678b-ME/building_data/genes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,234 copying build/lib/coralme/iJL1678b-ME/building_data/TUs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,237 copying build/lib/coralme/iJL1678b-ME/building_data/sigma_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,239 copying build/lib/coralme/iJL1678b-ME/building_data/reaction_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,241 copying build/lib/coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,244 copying build/lib/coralme/iJL1678b-ME/building_data/generic_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,246 copying build/lib/coralme/iJL1678b-ME/building_data/folding_chaperones.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,248 copying build/lib/coralme/iJL1678b-ME/building_data/protein_complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,252 copying build/lib/coralme/iJL1678b-ME/building_data/translocation_multipliers.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,253 copying build/lib/coralme/iJL1678b-ME/building_data/genome.gb -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-04-10T20:00:04,437 running install_egg_info 2026-04-10T20:00:04,442 running egg_info 2026-04-10T20:00:04,448 writing coralME.egg-info/PKG-INFO 2026-04-10T20:00:04,452 writing dependency_links to coralME.egg-info/dependency_links.txt 2026-04-10T20:00:04,453 writing entry points to coralME.egg-info/entry_points.txt 2026-04-10T20:00:04,457 writing requirements to coralME.egg-info/requires.txt 2026-04-10T20:00:04,459 writing top-level names to coralME.egg-info/top_level.txt 2026-04-10T20:00:04,499 reading manifest file 'coralME.egg-info/SOURCES.txt' 2026-04-10T20:00:04,514 adding license file 'LICENSE' 2026-04-10T20:00:04,528 writing manifest file 'coralME.egg-info/SOURCES.txt' 2026-04-10T20:00:04,536 Copying coralME.egg-info to build/bdist.linux-armv7l/wheel/./coralME-1.2.3.1-py3.11.egg-info 2026-04-10T20:00:04,549 running install_scripts 2026-04-10T20:00:04,561 creating build/bdist.linux-armv7l/wheel/coralme-1.2.3.1.dist-info/WHEEL 2026-04-10T20:00:04,564 creating '/tmp/pip-wheel-s8oubzxo/.tmp-j6_w8xkg/coralme-1.2.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-10T20:00:04,567 adding 'coralme/__init__.py' 2026-04-10T20:00:04,568 adding 'coralme/_version.py' 2026-04-10T20:00:04,571 adding 'coralme/builder/__init__.py' 2026-04-10T20:00:04,572 adding 'coralme/builder/auto_blast.sh' 2026-04-10T20:00:04,574 adding 'coralme/builder/column_format.json' 2026-04-10T20:00:04,576 adding 'coralme/builder/compartments.py' 2026-04-10T20:00:04,581 adding 'coralme/builder/curation.py' 2026-04-10T20:00:04,584 adding 'coralme/builder/dictionaries.py' 2026-04-10T20:00:04,586 adding 'coralme/builder/dna_replication.py' 2026-04-10T20:00:04,589 adding 'coralme/builder/flat_files.py' 2026-04-10T20:00:04,591 adding 'coralme/builder/formulas.py' 2026-04-10T20:00:04,593 adding 'coralme/builder/gpr.py' 2026-04-10T20:00:04,595 adding 'coralme/builder/helper_functions.py' 2026-04-10T20:00:04,597 adding 'coralme/builder/homology.py' 2026-04-10T20:00:04,617 adding 'coralme/builder/main.py' 2026-04-10T20:00:04,620 adding 'coralme/builder/modifications.py' 2026-04-10T20:00:04,622 adding 'coralme/builder/notes.py' 2026-04-10T20:00:04,633 adding 'coralme/builder/organism.py' 2026-04-10T20:00:04,639 adding 'coralme/builder/preprocess_inputs.py' 2026-04-10T20:00:04,641 adding 'coralme/builder/ribosome.py' 2026-04-10T20:00:04,643 adding 'coralme/builder/transcription.py' 2026-04-10T20:00:04,645 adding 'coralme/builder/translation.py' 2026-04-10T20:00:04,647 adding 'coralme/builder/translocation.py' 2026-04-10T20:00:04,649 adding 'coralme/builder/trna_charging.py' 2026-04-10T20:00:04,651 adding 'coralme/builder/troubleshooting.py' 2026-04-10T20:00:04,653 adding 'coralme/core/__init__.py' 2026-04-10T20:00:04,655 adding 'coralme/core/component.py' 2026-04-10T20:00:04,658 adding 'coralme/core/extended_classes.py' 2026-04-10T20:00:04,666 adding 'coralme/core/model.py' 2026-04-10T20:00:04,670 adding 'coralme/core/optimization.py' 2026-04-10T20:00:04,673 adding 'coralme/core/parameters.py' 2026-04-10T20:00:04,679 adding 'coralme/core/processdata.py' 2026-04-10T20:00:04,689 adding 'coralme/core/reaction.py' 2026-04-10T20:00:04,693 adding 'coralme/iJL1678b-ME/BarEven_subsystem_classification.csv' 2026-04-10T20:00:04,695 adding 'coralme/iJL1678b-ME/minimal-organism.json' 2026-04-10T20:00:04,698 adding 'coralme/iJL1678b-ME/building_data/RNAs.txt' 2026-04-10T20:00:04,717 adding 'coralme/iJL1678b-ME/building_data/TUs.txt' 2026-04-10T20:00:04,737 adding 'coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt' 2026-04-10T20:00:04,740 adding 'coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt' 2026-04-10T20:00:04,742 adding 'coralme/iJL1678b-ME/building_data/cleaved_methionine.txt' 2026-04-10T20:00:04,744 adding 'coralme/iJL1678b-ME/building_data/elongation_subreactions.txt' 2026-04-10T20:00:04,753 adding 'coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt' 2026-04-10T20:00:04,755 adding 'coralme/iJL1678b-ME/building_data/excision_machinery.txt' 2026-04-10T20:00:04,757 adding 'coralme/iJL1678b-ME/building_data/folding_chaperones.txt' 2026-04-10T20:00:04,758 adding 'coralme/iJL1678b-ME/building_data/folding_dict.txt' 2026-04-10T20:00:04,760 adding 'coralme/iJL1678b-ME/building_data/generic_dict.txt' 2026-04-10T20:00:04,815 adding 'coralme/iJL1678b-ME/building_data/genes.txt' 2026-04-10T20:00:08,961 adding 'coralme/iJL1678b-ME/building_data/genome.gb' 2026-04-10T20:00:09,093 adding 'coralme/iJL1678b-ME/building_data/iJO1366b.json' 2026-04-10T20:00:09,100 adding 'coralme/iJL1678b-ME/building_data/initiation_subreactions.txt' 2026-04-10T20:00:09,126 adding 'coralme/iJL1678b-ME/building_data/keffs.json' 2026-04-10T20:00:09,151 adding 'coralme/iJL1678b-ME/building_data/keffs.txt' 2026-04-10T20:00:09,154 adding 'coralme/iJL1678b-ME/building_data/lipid_modifications.txt' 2026-04-10T20:00:09,155 adding 'coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt' 2026-04-10T20:00:09,213 adding 'coralme/iJL1678b-ME/building_data/m_model.json' 2026-04-10T20:00:09,220 adding 'coralme/iJL1678b-ME/building_data/m_to_me_mets.txt' 2026-04-10T20:00:09,221 adding 'coralme/iJL1678b-ME/building_data/me_metabolites.txt' 2026-04-10T20:00:09,223 adding 'coralme/iJL1678b-ME/building_data/metabolite_corrections.txt' 2026-04-10T20:00:09,230 adding 'coralme/iJL1678b-ME/building_data/metabolites.txt' 2026-04-10T20:00:09,232 adding 'coralme/iJL1678b-ME/building_data/modification.txt' 2026-04-10T20:00:09,233 adding 'coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt' 2026-04-10T20:00:09,236 adding 'coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt' 2026-04-10T20:00:09,237 adding 'coralme/iJL1678b-ME/building_data/peptide_release_factors.txt' 2026-04-10T20:00:09,240 adding 'coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt' 2026-04-10T20:00:09,247 adding 'coralme/iJL1678b-ME/building_data/protein_complexes.txt' 2026-04-10T20:00:09,249 adding 'coralme/iJL1678b-ME/building_data/protein_corrections.txt' 2026-04-10T20:00:09,253 adding 'coralme/iJL1678b-ME/building_data/protein_modification.txt' 2026-04-10T20:00:09,261 adding 'coralme/iJL1678b-ME/building_data/proteins.txt' 2026-04-10T20:00:09,263 adding 'coralme/iJL1678b-ME/building_data/reaction_corrections.txt' 2026-04-10T20:00:09,267 adding 'coralme/iJL1678b-ME/building_data/reaction_matrix.txt' 2026-04-10T20:00:11,848 adding 'coralme/iJL1678b-ME/building_data/reference_tRNAs.fna' 2026-04-10T20:00:11,879 adding 'coralme/iJL1678b-ME/building_data/rho_independent.txt' 2026-04-10T20:00:11,880 adding 'coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt' 2026-04-10T20:00:11,881 adding 'coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt' 2026-04-10T20:00:11,883 adding 'coralme/iJL1678b-ME/building_data/rna_degradosome.txt' 2026-04-10T20:00:11,884 adding 'coralme/iJL1678b-ME/building_data/rna_modification.txt' 2026-04-10T20:00:11,886 adding 'coralme/iJL1678b-ME/building_data/rrna_modifications.txt' 2026-04-10T20:00:11,887 adding 'coralme/iJL1678b-ME/building_data/sigma_factors.txt' 2026-04-10T20:00:11,889 adding 'coralme/iJL1678b-ME/building_data/special_modifications.txt' 2026-04-10T20:00:11,890 adding 'coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt' 2026-04-10T20:00:11,892 adding 'coralme/iJL1678b-ME/building_data/stable_RNAs.txt' 2026-04-10T20:00:11,894 adding 'coralme/iJL1678b-ME/building_data/subreaction_matrix.txt' 2026-04-10T20:00:11,895 adding 'coralme/iJL1678b-ME/building_data/subsystem_classification.txt' 2026-04-10T20:00:11,896 adding 'coralme/iJL1678b-ME/building_data/termination_subreactions.txt' 2026-04-10T20:00:11,898 adding 'coralme/iJL1678b-ME/building_data/transcription_subreactions.txt' 2026-04-10T20:00:11,899 adding 'coralme/iJL1678b-ME/building_data/translocation_multipliers.txt' 2026-04-10T20:00:11,900 adding 'coralme/iJL1678b-ME/building_data/translocation_pathways.txt' 2026-04-10T20:00:11,902 adding 'coralme/iJL1678b-ME/building_data/trna_modification.txt' 2026-04-10T20:00:11,906 adding 'coralme/iJT964-ME/building_data/RNAs.txt' 2026-04-10T20:00:11,921 adding 'coralme/iJT964-ME/building_data/TUs_from_biocyc.txt' 2026-04-10T20:00:11,923 adding 'coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt' 2026-04-10T20:00:11,924 adding 'coralme/iJT964-ME/building_data/cleaved_methionine.txt' 2026-04-10T20:00:11,966 adding 'coralme/iJT964-ME/building_data/complexes.txt' 2026-04-10T20:00:11,970 adding 'coralme/iJT964-ME/building_data/elongation_subreactions.txt' 2026-04-10T20:00:11,974 adding 'coralme/iJT964-ME/building_data/enzyme_reaction_association.txt' 2026-04-10T20:00:11,975 adding 'coralme/iJT964-ME/building_data/excision_machinery.txt' 2026-04-10T20:00:11,977 adding 'coralme/iJT964-ME/building_data/folding_dict.txt' 2026-04-10T20:00:11,978 adding 'coralme/iJT964-ME/building_data/generic_dict.txt' 2026-04-10T20:00:12,021 adding 'coralme/iJT964-ME/building_data/genes.txt' 2026-04-10T20:00:15,756 adding 'coralme/iJT964-ME/building_data/genome.gb' 2026-04-10T20:00:15,833 adding 'coralme/iJT964-ME/building_data/helper.ipynb' 2026-04-10T20:00:15,834 adding 'coralme/iJT964-ME/building_data/initiation_subreactions.txt' 2026-04-10T20:00:15,835 adding 'coralme/iJT964-ME/building_data/lipid_modifications.txt' 2026-04-10T20:00:15,837 adding 'coralme/iJT964-ME/building_data/lipoprotein_precursors.txt' 2026-04-10T20:00:15,866 adding 'coralme/iJT964-ME/building_data/m_model.json' 2026-04-10T20:00:15,871 adding 'coralme/iJT964-ME/building_data/me_metabolites.txt' 2026-04-10T20:00:15,873 adding 'coralme/iJT964-ME/building_data/metabolite_corrections.txt' 2026-04-10T20:00:15,874 adding 'coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt' 2026-04-10T20:00:15,880 adding 'coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt' 2026-04-10T20:00:15,882 adding 'coralme/iJT964-ME/building_data/peptide_release_factors.txt' 2026-04-10T20:00:15,884 adding 'coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt' 2026-04-10T20:00:15,925 adding 'coralme/iJT964-ME/building_data/protein_complexes.txt' 2026-04-10T20:00:15,930 adding 'coralme/iJT964-ME/building_data/protein_corrections.txt' 2026-04-10T20:00:15,932 adding 'coralme/iJT964-ME/building_data/protein_modification.txt' 2026-04-10T20:00:15,986 adding 'coralme/iJT964-ME/building_data/proteins.txt' 2026-04-10T20:00:15,990 adding 'coralme/iJT964-ME/building_data/reaction_corrections.txt' 2026-04-10T20:00:15,991 adding 'coralme/iJT964-ME/building_data/reaction_matrix.txt' 2026-04-10T20:00:15,993 adding 'coralme/iJT964-ME/building_data/reaction_median_keffs.txt' 2026-04-10T20:00:15,994 adding 'coralme/iJT964-ME/building_data/rho_independent.txt' 2026-04-10T20:00:15,995 adding 'coralme/iJT964-ME/building_data/ribosomal_proteins.txt' 2026-04-10T20:00:15,996 adding 'coralme/iJT964-ME/building_data/ribosome_subreactions.txt' 2026-04-10T20:00:15,998 adding 'coralme/iJT964-ME/building_data/rna_degradosome.txt' 2026-04-10T20:00:15,999 adding 'coralme/iJT964-ME/building_data/rna_modification.txt' 2026-04-10T20:00:18,227 adding 'coralme/iJT964-ME/building_data/sequences.fasta' 2026-04-10T20:00:18,254 adding 'coralme/iJT964-ME/building_data/sigma_factors.txt' 2026-04-10T20:00:18,256 adding 'coralme/iJT964-ME/building_data/special_modifications.txt' 2026-04-10T20:00:18,257 adding 'coralme/iJT964-ME/building_data/special_trna_subreactions.txt' 2026-04-10T20:00:18,259 adding 'coralme/iJT964-ME/building_data/subreaction_matrix.txt' 2026-04-10T20:00:18,260 adding 'coralme/iJT964-ME/building_data/subsystem_classification.txt' 2026-04-10T20:00:18,261 adding 'coralme/iJT964-ME/building_data/termination_subreactions.txt' 2026-04-10T20:00:18,262 adding 'coralme/iJT964-ME/building_data/transcription_subreactions.txt' 2026-04-10T20:00:18,264 adding 'coralme/iJT964-ME/building_data/translocation_multipliers.txt' 2026-04-10T20:00:18,265 adding 'coralme/iJT964-ME/building_data/translocation_pathways.txt' 2026-04-10T20:00:18,267 adding 'coralme/io/JSONSCHEMA' 2026-04-10T20:00:18,269 adding 'coralme/io/__init__.py' 2026-04-10T20:00:18,271 adding 'coralme/io/dict.py' 2026-04-10T20:00:18,273 adding 'coralme/io/helper.retrocompatibility.ipynb' 2026-04-10T20:00:18,275 adding 'coralme/io/json.py' 2026-04-10T20:00:18,276 adding 'coralme/io/pickle.py' 2026-04-10T20:00:18,278 adding 'coralme/licenses/LICENSE-cobrame' 2026-04-10T20:00:18,279 adding 'coralme/licenses/LICENSE-ecolime' 2026-04-10T20:00:18,280 adding 'coralme/licenses/LICENSE-solvemepy' 2026-04-10T20:00:18,282 adding 'coralme/solver/LICENSE' 2026-04-10T20:00:22,894 adding 'coralme/solver/MEModel-step2-iJL1678b-ME.json' 2026-04-10T20:00:23,103 adding 'coralme/solver/__init__.py' 2026-04-10T20:00:23,105 adding 'coralme/solver/solver.py' 2026-04-10T20:00:23,123 adding 'coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:23,130 adding 'coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:23,137 adding 'coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:23,143 adding 'coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:23,150 adding 'coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:23,166 adding 'coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:23,183 adding 'coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:23,200 adding 'coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:23,207 adding 'coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:23,213 adding 'coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:23,220 adding 'coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:23,226 adding 'coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:23,243 adding 'coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:23,260 adding 'coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:23,358 adding 'coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:23,442 adding 'coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:23,525 adding 'coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:23,608 adding 'coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:23,692 adding 'coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:23,793 adding 'coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:23,894 adding 'coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:23,993 adding 'coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:24,077 adding 'coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:24,159 adding 'coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:24,241 adding 'coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:24,323 adding 'coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:24,421 adding 'coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:24,520 adding 'coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:24,605 adding 'coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:24,673 adding 'coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:24,744 adding 'coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:24,811 adding 'coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:24,877 adding 'coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:24,963 adding 'coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:25,048 adding 'coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:25,057 adding 'coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,064 adding 'coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,070 adding 'coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,077 adding 'coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,083 adding 'coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,089 adding 'coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,096 adding 'coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,103 adding 'coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,182 adding 'coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,264 adding 'coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,346 adding 'coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,427 adding 'coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,509 adding 'coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,591 adding 'coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,658 adding 'coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,725 adding 'coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,792 adding 'coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,859 adding 'coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,867 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:25,874 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,880 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,886 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,893 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,908 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:25,914 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:25,920 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:25,927 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:25,933 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:25,939 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:25,946 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:25,961 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:25,967 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:26,047 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:26,128 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:26,210 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:26,292 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:26,374 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:26,472 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:26,554 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:26,635 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:26,716 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:26,797 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:26,878 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:26,960 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:27,056 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:27,138 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:27,205 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so' 2026-04-10T20:00:27,272 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-04-10T20:00:27,339 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-04-10T20:00:27,406 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-04-10T20:00:27,473 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-04-10T20:00:27,557 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so' 2026-04-10T20:00:27,624 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so' 2026-04-10T20:00:27,627 adding 'coralme/util/__init__.py' 2026-04-10T20:00:27,634 adding 'coralme/util/building.py' 2026-04-10T20:00:27,636 adding 'coralme/util/change_model_genes.py' 2026-04-10T20:00:27,638 adding 'coralme/util/cli.py' 2026-04-10T20:00:27,639 adding 'coralme/util/compare.py' 2026-04-10T20:00:27,641 adding 'coralme/util/dogma.py' 2026-04-10T20:00:27,643 adding 'coralme/util/essentiality.py' 2026-04-10T20:00:27,644 adding 'coralme/util/excel2model.py' 2026-04-10T20:00:27,646 adding 'coralme/util/flux_analysis.py' 2026-04-10T20:00:27,648 adding 'coralme/util/massbalance.py' 2026-04-10T20:00:27,649 adding 'coralme/util/model2excel.py' 2026-04-10T20:00:27,652 adding 'coralme-1.2.3.1.dist-info/licenses/LICENSE' 2026-04-10T20:00:27,654 adding 'coralme-1.2.3.1.dist-info/METADATA' 2026-04-10T20:00:27,655 adding 'coralme-1.2.3.1.dist-info/WHEEL' 2026-04-10T20:00:27,656 adding 'coralme-1.2.3.1.dist-info/entry_points.txt' 2026-04-10T20:00:27,657 adding 'coralme-1.2.3.1.dist-info/top_level.txt' 2026-04-10T20:00:27,661 adding 'coralme-1.2.3.1.dist-info/RECORD' 2026-04-10T20:00:27,917 removing build/bdist.linux-armv7l/wheel 2026-04-10T20:00:28,331 Building wheel for coralme (pyproject.toml): finished with status 'done' 2026-04-10T20:00:28,862 Created wheel for coralme: filename=coralme-1.2.3.1-py3-none-any.whl size=24459273 sha256=4eb3e9c522225d3c55008e54292333807dc0f212f625befceb76f599d34e1bd6 2026-04-10T20:00:28,863 Stored in directory: /tmp/pip-ephem-wheel-cache-yyoiq4e4/wheels/25/8c/6d/b9abe7514327cf08f938e03d0f23fe19b362e50e570db8ff58 2026-04-10T20:00:28,890 Successfully built coralme 2026-04-10T20:00:29,488 Removed build tracker: '/tmp/pip-build-tracker-28q27ib6'