2026-04-11T16:38:45,029 Created temporary directory: /tmp/pip-ephem-wheel-cache-s5rgqkxu 2026-04-11T16:38:45,030 Created temporary directory: /tmp/pip-build-tracker-oae682rg 2026-04-11T16:38:45,031 Initialized build tracking at /tmp/pip-build-tracker-oae682rg 2026-04-11T16:38:45,031 Created build tracker: /tmp/pip-build-tracker-oae682rg 2026-04-11T16:38:45,032 Entered build tracker: /tmp/pip-build-tracker-oae682rg 2026-04-11T16:38:45,032 Created temporary directory: /tmp/pip-wheel-dzt0ogxw 2026-04-11T16:38:45,035 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-11T16:38:45,038 Created temporary directory: /tmp/pip-ephem-wheel-cache-fneddvj0 2026-04-11T16:38:45,059 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-11T16:38:45,062 2 location(s) to search for versions of ragbio: 2026-04-11T16:38:45,062 * https://pypi.org/simple/ragbio/ 2026-04-11T16:38:45,062 * https://www.piwheels.org/simple/ragbio/ 2026-04-11T16:38:45,063 Fetching project page and analyzing links: https://pypi.org/simple/ragbio/ 2026-04-11T16:38:45,064 Getting page https://pypi.org/simple/ragbio/ 2026-04-11T16:38:45,065 Found index url https://pypi.org/simple 2026-04-11T16:38:45,292 Fetched page https://pypi.org/simple/ragbio/ as application/vnd.pypi.simple.v1+json 2026-04-11T16:38:45,296 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/49/ef/b76938c77f3c7b1ea66f2f25e49ae4b169e1f8050de61183a14e6ac4d4fe/ragbio-0.1.12-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,298 Found link https://files.pythonhosted.org/packages/34/53/62f7f4e6ea6e004f8ef0bcfe3006736331f55847fa6dea5ab395b84f1663/ragbio-0.1.12.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.1.12 2026-04-11T16:38:45,298 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/dc/24/2258809d9b74a8ca4f242fff2e0710b7bf4931298e52997448b7aa979848/ragbio-0.1.13-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,299 Found link https://files.pythonhosted.org/packages/88/6a/2ec5f1bd89c003be226c58beb02fac2d381fbf82e0431448569082feccf9/ragbio-0.1.13.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.1.13 2026-04-11T16:38:45,300 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/c7/a8/c7101107c29a737cc4ccca14f007fd24cb580c12efe4ab2cb20485ec68b5/ragbio-0.1.14-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,301 Found link https://files.pythonhosted.org/packages/65/46/d81d49123a6d72d33a8dc738cd291840dbb0364981934eed92b812593784/ragbio-0.1.14.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.1.14 2026-04-11T16:38:45,302 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/53/fc/e8d2981a19d57c4d3f6b02fb0d17894a566a27f823271a16f359590ca575/ragbio-0.1.15-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,303 Found link https://files.pythonhosted.org/packages/b2/6a/ce7400e812f3b729d6f96ee55e4be82e0dd7e94436eceb720202605d21c2/ragbio-0.1.15.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.1.15 2026-04-11T16:38:45,304 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/a7/3b/51d94164ad35f46f891a280570a132a1b2ce41b92213a3379b69491f2f88/ragbio-0.1.16-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,305 Found link https://files.pythonhosted.org/packages/26/55/7d03382697209683443eb141bf3c21588ebe369c159e06905f55542f2760/ragbio-0.1.16.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.1.16 2026-04-11T16:38:45,306 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/74/03/69e8d6eff4b946927ac368525c9e582f292b280caf1fb96e049c9c782eb0/ragbio-0.1.18-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,307 Found link https://files.pythonhosted.org/packages/04/1b/9277623cfdbcf56500c5eb16bd106aac8166b3cfdbafc603c4e43fe9037b/ragbio-0.1.18.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11), version: 0.1.18 2026-04-11T16:38:45,307 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/13/89/817fb58372af8de98089e95c0bc7e62836ff8b283bb3c643b9b95c7fe4f1/ragbio-0.1.19-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,308 Found link https://files.pythonhosted.org/packages/5e/8c/c2c03cb6a3389f09e82948dc501b8fe0d9e1d4201be245849cea108b5170/ragbio-0.1.19.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11), version: 0.1.19 2026-04-11T16:38:45,309 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/49/dd/c6f5be435b421e56629a776c577c254e7df3ad6611834a79c6316fcee623/ragbio-0.2.0-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,310 Found link https://files.pythonhosted.org/packages/fe/46/ff2fc5045df43573db716965a6da68f2b57ac8580a48fb653be837f562e6/ragbio-0.2.0.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.9), version: 0.2.0 2026-04-11T16:38:45,310 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/28/c2/59f3446423af971cdf980f107bcb2cd6e78e1fe81d9a6079cf819ee20ffa/ragbio-2.0.1-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,311 Found link https://files.pythonhosted.org/packages/b4/a7/26c71fc43bf98b004b453f5c5cda94a91ab2363212e8b152b583579b1d17/ragbio-2.0.1.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11), version: 2.0.1 2026-04-11T16:38:45,312 Skipping link: No binaries permitted for ragbio: https://files.pythonhosted.org/packages/b9/69/647c5c9bece7cde0cd7e5268e397e5dd7fbc540d1235b730195c269b1e97/ragbio-2.0.2-py3-none-any.whl (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,313 Found link https://files.pythonhosted.org/packages/6e/ac/338ef159055a621a2cc1cde044bf8867c7fe97dc808441cf6d367d947ae8/ragbio-2.0.2.tar.gz (from https://pypi.org/simple/ragbio/) (requires-python:>=3.11), version: 2.0.2 2026-04-11T16:38:45,314 Fetching project page and analyzing links: https://www.piwheels.org/simple/ragbio/ 2026-04-11T16:38:45,315 Getting page https://www.piwheels.org/simple/ragbio/ 2026-04-11T16:38:45,316 Found index url https://www.piwheels.org/simple 2026-04-11T16:38:45,501 Fetched page https://www.piwheels.org/simple/ragbio/ as text/html 2026-04-11T16:38:45,505 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-2.0.1-py3-none-any.whl#sha256=ebc0571773bcf6e7fe57245944733d8f521c76b5d48d4f47d62a741f35d22b88 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,506 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.2.0-py3-none-any.whl#sha256=e28b71bf95506762d0bf01cb5d29e25e0cf70da81a2021dfc23c5b4ac4bcca14 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,506 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.18-py3-none-any.whl#sha256=ae4a0ea260253cca02d3a906ad7ba20f0ab310e31c89fbbb404747be738b8928 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.11) 2026-04-11T16:38:45,507 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.16-py3-none-any.whl#sha256=d781caa34817f9d0f8a47fec3f0f2b5015b0586fe74e3d8f45e9d0b76636f8b7 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,508 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.15-py3-none-any.whl#sha256=3ae98be8655aa5cd890af15b5bf3901b7ccc736fa1b76f4a4ff348439916e636 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,508 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.14-py3-none-any.whl#sha256=d47c12cf3a49dcfab39564a7c345d8236e15c6aab1877957c897d7483cbf47f9 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,509 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.13-py3-none-any.whl#sha256=912866e12d366e61f3649d8b9072c4b60371a424bb5c6890f10ca07a27263b17 (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,509 Skipping link: No binaries permitted for ragbio: https://archive1.piwheels.org/simple/ragbio/ragbio-0.1.12-py3-none-any.whl#sha256=1342160fe2f337fa22045a27acec4b081fa922939b65d47324ece873fd3618be (from https://www.piwheels.org/simple/ragbio/) (requires-python:>=3.9) 2026-04-11T16:38:45,510 Skipping link: not a file: https://www.piwheels.org/simple/ragbio/ 2026-04-11T16:38:45,510 Skipping link: not a file: https://pypi.org/simple/ragbio/ 2026-04-11T16:38:45,532 Given no hashes to check 1 links for project 'ragbio': discarding no candidates 2026-04-11T16:38:45,551 Collecting ragbio==2.0.2 2026-04-11T16:38:45,553 Created temporary directory: /tmp/pip-unpack-wr5bk1ad 2026-04-11T16:38:45,780 Downloading ragbio-2.0.2.tar.gz (194 kB) 2026-04-11T16:38:45,944 Added ragbio==2.0.2 from https://files.pythonhosted.org/packages/6e/ac/338ef159055a621a2cc1cde044bf8867c7fe97dc808441cf6d367d947ae8/ragbio-2.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-oae682rg' 2026-04-11T16:38:45,950 Created temporary directory: /tmp/pip-build-env-kz0_bous 2026-04-11T16:38:45,954 Installing build dependencies: started 2026-04-11T16:38:45,956 Running command pip subprocess to install build dependencies 2026-04-11T16:38:47,110 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-11T16:38:47,547 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-11T16:38:47,571 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-11T16:38:49,353 Collecting setuptools>=61.0 2026-04-11T16:38:49,434 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-11T16:38:49,704 Collecting wheel 2026-04-11T16:38:49,720 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-11T16:38:49,906 Collecting packaging>=24.0 2026-04-11T16:38:49,924 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-11T16:38:52,884 Installing collected packages: setuptools, packaging, wheel 2026-04-11T16:38:56,270 Creating /tmp/pip-build-env-kz0_bous/overlay/local/bin 2026-04-11T16:38:56,272 changing mode of /tmp/pip-build-env-kz0_bous/overlay/local/bin/wheel to 755 2026-04-11T16:38:56,293 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-11T16:38:56,571 Installing build dependencies: finished with status 'done' 2026-04-11T16:38:56,577 Getting requirements to build wheel: started 2026-04-11T16:38:56,579 Running command Getting requirements to build wheel 2026-04-11T16:38:57,201 /tmp/pip-build-env-kz0_bous/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-11T16:38:57,201 !! 2026-04-11T16:38:57,202 ******************************************************************************** 2026-04-11T16:38:57,202 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-11T16:38:57,203 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-11T16:38:57,204 or your builds will no longer be supported. 2026-04-11T16:38:57,205 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T16:38:57,205 ******************************************************************************** 2026-04-11T16:38:57,206 !! 2026-04-11T16:38:57,206 corresp(dist, value, root_dir) 2026-04-11T16:38:57,294 running egg_info 2026-04-11T16:38:57,300 writing ragbio.egg-info/PKG-INFO 2026-04-11T16:38:57,304 writing dependency_links to ragbio.egg-info/dependency_links.txt 2026-04-11T16:38:57,306 writing requirements to ragbio.egg-info/requires.txt 2026-04-11T16:38:57,308 writing top-level names to ragbio.egg-info/top_level.txt 2026-04-11T16:38:57,333 reading manifest file 'ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:57,336 reading manifest template 'MANIFEST.in' 2026-04-11T16:38:57,338 adding license file 'LICENSE' 2026-04-11T16:38:57,341 writing manifest file 'ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:57,439 Getting requirements to build wheel: finished with status 'done' 2026-04-11T16:38:57,442 Created temporary directory: /tmp/pip-modern-metadata-v85lpk01 2026-04-11T16:38:57,444 Preparing metadata (pyproject.toml): started 2026-04-11T16:38:57,446 Running command Preparing metadata (pyproject.toml) 2026-04-11T16:38:58,015 /tmp/pip-build-env-kz0_bous/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-11T16:38:58,015 !! 2026-04-11T16:38:58,017 ******************************************************************************** 2026-04-11T16:38:58,017 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-11T16:38:58,018 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-11T16:38:58,019 or your builds will no longer be supported. 2026-04-11T16:38:58,020 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T16:38:58,021 ******************************************************************************** 2026-04-11T16:38:58,022 !! 2026-04-11T16:38:58,023 corresp(dist, value, root_dir) 2026-04-11T16:38:58,103 running dist_info 2026-04-11T16:38:58,113 creating /tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info 2026-04-11T16:38:58,114 writing /tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/PKG-INFO 2026-04-11T16:38:58,118 writing dependency_links to /tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/dependency_links.txt 2026-04-11T16:38:58,120 writing requirements to /tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/requires.txt 2026-04-11T16:38:58,121 writing top-level names to /tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/top_level.txt 2026-04-11T16:38:58,123 writing manifest file '/tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:58,145 reading manifest file '/tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:58,147 reading manifest template 'MANIFEST.in' 2026-04-11T16:38:58,148 adding license file 'LICENSE' 2026-04-11T16:38:58,151 writing manifest file '/tmp/pip-modern-metadata-v85lpk01/ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:58,152 creating '/tmp/pip-modern-metadata-v85lpk01/ragbio-2.0.2.dist-info' 2026-04-11T16:38:58,275 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-11T16:38:58,280 Source in /tmp/pip-wheel-dzt0ogxw/ragbio_364199e799204b419a8b50223f4f6e0e has version 2.0.2, which satisfies requirement ragbio==2.0.2 from https://files.pythonhosted.org/packages/6e/ac/338ef159055a621a2cc1cde044bf8867c7fe97dc808441cf6d367d947ae8/ragbio-2.0.2.tar.gz 2026-04-11T16:38:58,281 Removed ragbio==2.0.2 from https://files.pythonhosted.org/packages/6e/ac/338ef159055a621a2cc1cde044bf8867c7fe97dc808441cf6d367d947ae8/ragbio-2.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-oae682rg' 2026-04-11T16:38:58,287 Created temporary directory: /tmp/pip-unpack-r7vbn_vc 2026-04-11T16:38:58,287 Building wheels for collected packages: ragbio 2026-04-11T16:38:58,292 Created temporary directory: /tmp/pip-wheel-vx9xby4d 2026-04-11T16:38:58,292 Destination directory: /tmp/pip-wheel-vx9xby4d 2026-04-11T16:38:58,294 Building wheel for ragbio (pyproject.toml): started 2026-04-11T16:38:58,295 Running command Building wheel for ragbio (pyproject.toml) 2026-04-11T16:38:58,861 /tmp/pip-build-env-kz0_bous/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-11T16:38:58,861 !! 2026-04-11T16:38:58,862 ******************************************************************************** 2026-04-11T16:38:58,863 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-11T16:38:58,864 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-11T16:38:58,864 or your builds will no longer be supported. 2026-04-11T16:38:58,865 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T16:38:58,866 ******************************************************************************** 2026-04-11T16:38:58,867 !! 2026-04-11T16:38:58,868 corresp(dist, value, root_dir) 2026-04-11T16:38:58,939 running bdist_wheel 2026-04-11T16:38:58,957 running build 2026-04-11T16:38:58,957 running build_py 2026-04-11T16:38:58,963 creating build/lib/ragbio 2026-04-11T16:38:58,965 copying ragbio/config.py -> build/lib/ragbio 2026-04-11T16:38:58,968 copying ragbio/__init__.py -> build/lib/ragbio 2026-04-11T16:38:58,970 creating build/lib/ragbio/utils 2026-04-11T16:38:58,971 copying ragbio/utils/rag_data_loader.py -> build/lib/ragbio/utils 2026-04-11T16:38:58,974 copying ragbio/utils/update_config.py -> build/lib/ragbio/utils 2026-04-11T16:38:58,976 copying ragbio/utils/__init__.py -> build/lib/ragbio/utils 2026-04-11T16:38:58,978 creating build/lib/ragbio/pipeline 2026-04-11T16:38:58,979 copying ragbio/pipeline/rag_pipeline.py -> build/lib/ragbio/pipeline 2026-04-11T16:38:58,982 copying ragbio/pipeline/__init__.py -> build/lib/ragbio/pipeline 2026-04-11T16:38:58,984 creating build/lib/ragbio/embeddings 2026-04-11T16:38:58,985 copying ragbio/embeddings/embedding_engine.py -> build/lib/ragbio/embeddings 2026-04-11T16:38:58,988 copying ragbio/embeddings/__init__.py -> build/lib/ragbio/embeddings 2026-04-11T16:38:58,990 creating build/lib/ragbio/knowledge_graph 2026-04-11T16:38:58,991 copying ragbio/knowledge_graph/structured_drug_kg.py -> build/lib/ragbio/knowledge_graph 2026-04-11T16:38:58,993 copying ragbio/knowledge_graph/__init__.py -> build/lib/ragbio/knowledge_graph 2026-04-11T16:38:58,994 running egg_info 2026-04-11T16:38:59,004 writing ragbio.egg-info/PKG-INFO 2026-04-11T16:38:59,007 writing dependency_links to ragbio.egg-info/dependency_links.txt 2026-04-11T16:38:59,009 writing requirements to ragbio.egg-info/requires.txt 2026-04-11T16:38:59,010 writing top-level names to ragbio.egg-info/top_level.txt 2026-04-11T16:38:59,024 reading manifest file 'ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:59,027 reading manifest template 'MANIFEST.in' 2026-04-11T16:38:59,028 adding license file 'LICENSE' 2026-04-11T16:38:59,031 writing manifest file 'ragbio.egg-info/SOURCES.txt' 2026-04-11T16:38:59,036 creating build/lib/ragbio/images 2026-04-11T16:38:59,037 copying ragbio/images/network_graph.png -> build/lib/ragbio/images 2026-04-11T16:38:59,053 installing to build/bdist.linux-armv7l/wheel 2026-04-11T16:38:59,054 running install 2026-04-11T16:38:59,078 running install_lib 2026-04-11T16:38:59,084 creating build/bdist.linux-armv7l/wheel 2026-04-11T16:38:59,086 creating build/bdist.linux-armv7l/wheel/ragbio 2026-04-11T16:38:59,088 creating build/bdist.linux-armv7l/wheel/ragbio/utils 2026-04-11T16:38:59,089 copying build/lib/ragbio/utils/rag_data_loader.py -> build/bdist.linux-armv7l/wheel/./ragbio/utils 2026-04-11T16:38:59,091 copying build/lib/ragbio/utils/update_config.py -> build/bdist.linux-armv7l/wheel/./ragbio/utils 2026-04-11T16:38:59,093 copying build/lib/ragbio/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./ragbio/utils 2026-04-11T16:38:59,094 copying build/lib/ragbio/config.py -> build/bdist.linux-armv7l/wheel/./ragbio 2026-04-11T16:38:59,097 creating build/bdist.linux-armv7l/wheel/ragbio/pipeline 2026-04-11T16:38:59,098 copying build/lib/ragbio/pipeline/rag_pipeline.py -> build/bdist.linux-armv7l/wheel/./ragbio/pipeline 2026-04-11T16:38:59,100 copying build/lib/ragbio/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./ragbio/pipeline 2026-04-11T16:38:59,103 creating build/bdist.linux-armv7l/wheel/ragbio/images 2026-04-11T16:38:59,104 copying build/lib/ragbio/images/network_graph.png -> build/bdist.linux-armv7l/wheel/./ragbio/images 2026-04-11T16:38:59,108 copying build/lib/ragbio/__init__.py -> build/bdist.linux-armv7l/wheel/./ragbio 2026-04-11T16:38:59,111 creating build/bdist.linux-armv7l/wheel/ragbio/embeddings 2026-04-11T16:38:59,112 copying build/lib/ragbio/embeddings/embedding_engine.py -> build/bdist.linux-armv7l/wheel/./ragbio/embeddings 2026-04-11T16:38:59,114 copying build/lib/ragbio/embeddings/__init__.py -> build/bdist.linux-armv7l/wheel/./ragbio/embeddings 2026-04-11T16:38:59,116 creating build/bdist.linux-armv7l/wheel/ragbio/knowledge_graph 2026-04-11T16:38:59,117 copying build/lib/ragbio/knowledge_graph/structured_drug_kg.py -> build/bdist.linux-armv7l/wheel/./ragbio/knowledge_graph 2026-04-11T16:38:59,119 copying build/lib/ragbio/knowledge_graph/__init__.py -> build/bdist.linux-armv7l/wheel/./ragbio/knowledge_graph 2026-04-11T16:38:59,120 running install_egg_info 2026-04-11T16:38:59,125 Copying ragbio.egg-info to build/bdist.linux-armv7l/wheel/./ragbio-2.0.2-py3.11.egg-info 2026-04-11T16:38:59,135 running install_scripts 2026-04-11T16:38:59,146 creating build/bdist.linux-armv7l/wheel/ragbio-2.0.2.dist-info/WHEEL 2026-04-11T16:38:59,148 creating '/tmp/pip-wheel-vx9xby4d/.tmp-_zzb3v1g/ragbio-2.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-11T16:38:59,151 adding 'ragbio/__init__.py' 2026-04-11T16:38:59,152 adding 'ragbio/config.py' 2026-04-11T16:38:59,154 adding 'ragbio/embeddings/__init__.py' 2026-04-11T16:38:59,156 adding 'ragbio/embeddings/embedding_engine.py' 2026-04-11T16:38:59,175 adding 'ragbio/images/network_graph.png' 2026-04-11T16:38:59,177 adding 'ragbio/knowledge_graph/__init__.py' 2026-04-11T16:38:59,179 adding 'ragbio/knowledge_graph/structured_drug_kg.py' 2026-04-11T16:38:59,180 adding 'ragbio/pipeline/__init__.py' 2026-04-11T16:38:59,183 adding 'ragbio/pipeline/rag_pipeline.py' 2026-04-11T16:38:59,184 adding 'ragbio/utils/__init__.py' 2026-04-11T16:38:59,186 adding 'ragbio/utils/rag_data_loader.py' 2026-04-11T16:38:59,188 adding 'ragbio/utils/update_config.py' 2026-04-11T16:38:59,191 adding 'ragbio-2.0.2.dist-info/licenses/LICENSE' 2026-04-11T16:38:59,193 adding 'ragbio-2.0.2.dist-info/METADATA' 2026-04-11T16:38:59,194 adding 'ragbio-2.0.2.dist-info/WHEEL' 2026-04-11T16:38:59,195 adding 'ragbio-2.0.2.dist-info/top_level.txt' 2026-04-11T16:38:59,195 adding 'ragbio-2.0.2.dist-info/RECORD' 2026-04-11T16:38:59,198 removing build/bdist.linux-armv7l/wheel 2026-04-11T16:38:59,303 Building wheel for ragbio (pyproject.toml): finished with status 'done' 2026-04-11T16:38:59,312 Created wheel for ragbio: filename=ragbio-2.0.2-py3-none-any.whl size=164240 sha256=0a8d4052ccca90b5311d7765ab12a4fa7ce47564f0ee786fc558d1e6c5c8f15f 2026-04-11T16:38:59,313 Stored in directory: /tmp/pip-ephem-wheel-cache-fneddvj0/wheels/c9/74/ce/6e5464fd4f5e94a2bed8e522f6eb10f8ec5f73171429fa3979 2026-04-11T16:38:59,325 Successfully built ragbio 2026-04-11T16:38:59,333 Removed build tracker: '/tmp/pip-build-tracker-oae682rg'