2026-04-11T23:16:25,801 Created temporary directory: /tmp/pip-ephem-wheel-cache-na08r527 2026-04-11T23:16:25,803 Created temporary directory: /tmp/pip-build-tracker-70y31fdz 2026-04-11T23:16:25,804 Initialized build tracking at /tmp/pip-build-tracker-70y31fdz 2026-04-11T23:16:25,804 Created build tracker: /tmp/pip-build-tracker-70y31fdz 2026-04-11T23:16:25,805 Entered build tracker: /tmp/pip-build-tracker-70y31fdz 2026-04-11T23:16:25,806 Created temporary directory: /tmp/pip-wheel-vcpnbcwz 2026-04-11T23:16:25,808 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-11T23:16:25,811 Created temporary directory: /tmp/pip-ephem-wheel-cache-9k4jyxvf 2026-04-11T23:16:25,833 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-11T23:16:25,836 2 location(s) to search for versions of varcode: 2026-04-11T23:16:25,836 * https://pypi.org/simple/varcode/ 2026-04-11T23:16:25,836 * https://www.piwheels.org/simple/varcode/ 2026-04-11T23:16:25,837 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-04-11T23:16:25,838 Getting page https://pypi.org/simple/varcode/ 2026-04-11T23:16:25,839 Found index url https://pypi.org/simple 2026-04-11T23:16:26,079 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-04-11T23:16:26,093 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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https://files.pythonhosted.org/packages/3a/89/0feee03c580aab4b3438091f4a806fac0059944b27ca882e98f0715603b0/varcode-0.3.16.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.16 2026-04-11T23:16:26,109 Found link https://files.pythonhosted.org/packages/9b/a9/7c93b93ef5af20931fa66db32b43f29b4c157eff26cdfb32f5b2459af307/varcode-0.3.17.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.17 2026-04-11T23:16:26,110 Found link https://files.pythonhosted.org/packages/ba/f3/a57fb7724823b7948ba60239653070a18bf8454baddb11662bd5aa5c3fea/varcode-0.3.18.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.18 2026-04-11T23:16:26,111 Found link https://files.pythonhosted.org/packages/81/6c/a41f945c1e4bf0e80e459d9ddfa9b04e7c608776f3bf19748875b7ab22a2/varcode-0.4.0.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.0 2026-04-11T23:16:26,112 Found link https://files.pythonhosted.org/packages/42/5e/5509edf379fcdd7c55e456ee09ab51f4c60597206ddfbc7b449ab0eae017/varcode-0.4.1.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.1 2026-04-11T23:16:26,112 Found link https://files.pythonhosted.org/packages/12/88/d44d94f8e8044c0ca386ade6013dd77dcddf910364f2d1e9e63028153a47/varcode-0.4.2.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.2 2026-04-11T23:16:26,113 Found link https://files.pythonhosted.org/packages/d5/a8/b158b095d6531940d069b57ecfa556fdcf22076a57139eba31fc201c3cb1/varcode-0.4.3.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.3 2026-04-11T23:16:26,114 Found link https://files.pythonhosted.org/packages/59/73/9f22a7926154b25770e633ed75ff1a03a3abaeeeea0d9bbd62751fc78858/varcode-0.4.4.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.4 2026-04-11T23:16:26,115 Found link 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https://archive1.piwheels.org/simple/varcode/varcode-0.3.13-py3-none-any.whl#sha256=7b8a84d929aad62a4e1b4434426f9fecdadd5e96e4cd33dd7770040c17c63349 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,387 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.12-py3-none-any.whl#sha256=c9c1ac76764b39f60d3413d090e06a9a12d7cdb1537fcc998983a740ed272152 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,388 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.11-py3-none-any.whl#sha256=d5ea4be6643a0aac73a4cece9bf41ce2fa61e5ff3750cdfe10c647e4506aa8a5 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,388 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.10-py3-none-any.whl#sha256=b97508619b54fa26ec11fd5b846720224ee44c5876374287f6e92d8d5ef3721d (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,388 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.9-py3-none-any.whl#sha256=fb33a28dcc4e647a1ad44e50b0151f50667a3ca53b3c0bdbee54381b031584b8 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,389 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.8-py3-none-any.whl#sha256=6deb536382523a15405d9ff5716ac82debc2c1ef24082650d684c2fa2b1d875b (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,390 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.7-py3-none-any.whl#sha256=78b3c18e40746b8b3f06db26afc77918dda6f0e8e4d893e7848ff13e5697a286 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,390 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.6-py3-none-any.whl#sha256=8fc2ff6dcc860db5b93a55bd03af3f79a490b199c2c1789e4da9d3c9dbd7360c (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,391 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.5-py3-none-any.whl#sha256=1d9d9233a86ce65776aaa1b783cf79b67e84da71eb370272fd8bdd6d9b0db585 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,392 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.4-py3-none-any.whl#sha256=06f2c6d54c36a8487cb1011893450f9f822b14b820b0a033773eae1740a22b97 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,392 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.3-py3-none-any.whl#sha256=dfae9cb2c80d772493a6163385aee2e0f0813703d53931f6c9333b7f371cde4a (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,393 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.2-py3-none-any.whl#sha256=11f36bcb9a14d27708448ce616902da2d8a77f945df9343b9be8b331e759dbfa (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,393 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.1-py3-none-any.whl#sha256=43e24cb90380c68b1ba50d53c1e2c4090332b4f2a58e12958b42af9970434ff2 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,394 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.2.1-py3-none-any.whl#sha256=e3a333b0cbb7eb9984b729c7dbbbfa4c0a189e08dfe53283c7222df3a2dfbf0a (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,394 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.1.1-py3-none-any.whl#sha256=470c8901b71faadb23ff67c9898089ab9d0b3b4a68a4a7f9af50fa9a0d11768a (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,395 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.1.0-py3-none-any.whl#sha256=83e13356265d60cee860a4bb72ff4f8aa8f1d5d0c677fec518a7c08bb89ba160 (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,396 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.0.3-py3-none-any.whl#sha256=35c3f383fc6bd302dc0dc00805dc27514906cbfa0f6ddd661635024b81cc3bed (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,396 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.0.2-py3-none-any.whl#sha256=75b17e9aad29be21e31e6e6eb7e670be2cb487b645169e1df93fb43d6bbef03f (from https://www.piwheels.org/simple/varcode/) 2026-04-11T23:16:26,396 Skipping link: not a file: https://www.piwheels.org/simple/varcode/ 2026-04-11T23:16:26,397 Skipping link: not a file: https://pypi.org/simple/varcode/ 2026-04-11T23:16:26,426 Given no hashes to check 1 links for project 'varcode': discarding no candidates 2026-04-11T23:16:26,446 Collecting varcode==1.3.2 2026-04-11T23:16:26,448 Created temporary directory: /tmp/pip-unpack-y16kj_48 2026-04-11T23:16:26,611 Downloading varcode-1.3.2.tar.gz (90 kB) 2026-04-11T23:16:26,834 Added varcode==1.3.2 from https://files.pythonhosted.org/packages/9f/93/17951104b26c07832309e1efda79576fdc6ba2f8e785c1b6adb9514c3103/varcode-1.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-70y31fdz' 2026-04-11T23:16:26,839 Created temporary directory: /tmp/pip-build-env-cm93xrpc 2026-04-11T23:16:26,844 Installing build dependencies: started 2026-04-11T23:16:26,845 Running command pip subprocess to install build dependencies 2026-04-11T23:16:26,875 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-11T23:16:26,914 Traceback (most recent call last): 2026-04-11T23:16:26,915 File "", line 192, in addpackage 2026-04-11T23:16:26,915 File "", line 1, in 2026-04-11T23:16:26,916 ModuleNotFoundError: No module named 'outofcuda' 2026-04-11T23:16:26,917 Remainder of file ignored 2026-04-11T23:16:28,008 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-11T23:16:28,422 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-11T23:16:28,445 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-11T23:16:30,268 Collecting setuptools>=64 2026-04-11T23:16:30,355 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-11T23:16:33,307 Installing collected packages: setuptools 2026-04-11T23:16:36,376 Successfully installed setuptools-82.0.1 2026-04-11T23:16:36,643 Installing build dependencies: finished with status 'done' 2026-04-11T23:16:36,651 Getting requirements to build wheel: started 2026-04-11T23:16:36,652 Running command Getting requirements to build wheel 2026-04-11T23:16:37,347 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:37,348 !! 2026-04-11T23:16:37,349 ******************************************************************************** 2026-04-11T23:16:37,349 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:37,350 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:37,351 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:37,351 ******************************************************************************** 2026-04-11T23:16:37,352 !! 2026-04-11T23:16:37,353 dist._finalize_license_expression() 2026-04-11T23:16:37,353 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:37,354 !! 2026-04-11T23:16:37,355 ******************************************************************************** 2026-04-11T23:16:37,355 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:37,356 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:37,357 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:37,358 ******************************************************************************** 2026-04-11T23:16:37,359 !! 2026-04-11T23:16:37,359 self._finalize_license_expression() 2026-04-11T23:16:37,360 running egg_info 2026-04-11T23:16:37,364 writing varcode.egg-info/PKG-INFO 2026-04-11T23:16:37,367 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-11T23:16:37,369 writing entry points to varcode.egg-info/entry_points.txt 2026-04-11T23:16:37,371 writing requirements to varcode.egg-info/requires.txt 2026-04-11T23:16:37,372 writing top-level names to varcode.egg-info/top_level.txt 2026-04-11T23:16:37,395 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:37,400 reading manifest template 'MANIFEST.in' 2026-04-11T23:16:37,401 adding license file 'LICENSE' 2026-04-11T23:16:37,406 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:37,502 Getting requirements to build wheel: finished with status 'done' 2026-04-11T23:16:37,506 Created temporary directory: /tmp/pip-modern-metadata-i9cvuynu 2026-04-11T23:16:37,508 Preparing metadata (pyproject.toml): started 2026-04-11T23:16:37,509 Running command Preparing metadata (pyproject.toml) 2026-04-11T23:16:38,140 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:38,141 !! 2026-04-11T23:16:38,142 ******************************************************************************** 2026-04-11T23:16:38,142 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:38,143 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:38,144 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:38,145 ******************************************************************************** 2026-04-11T23:16:38,146 !! 2026-04-11T23:16:38,147 dist._finalize_license_expression() 2026-04-11T23:16:38,147 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:38,148 !! 2026-04-11T23:16:38,149 ******************************************************************************** 2026-04-11T23:16:38,150 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:38,151 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:38,152 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:38,153 ******************************************************************************** 2026-04-11T23:16:38,154 !! 2026-04-11T23:16:38,155 self._finalize_license_expression() 2026-04-11T23:16:38,155 running dist_info 2026-04-11T23:16:38,164 creating /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info 2026-04-11T23:16:38,165 writing /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/PKG-INFO 2026-04-11T23:16:38,168 writing dependency_links to /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/dependency_links.txt 2026-04-11T23:16:38,170 writing entry points to /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/entry_points.txt 2026-04-11T23:16:38,172 writing requirements to /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/requires.txt 2026-04-11T23:16:38,173 writing top-level names to /tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/top_level.txt 2026-04-11T23:16:38,174 writing manifest file '/tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:38,194 reading manifest file '/tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:38,196 reading manifest template 'MANIFEST.in' 2026-04-11T23:16:38,197 adding license file 'LICENSE' 2026-04-11T23:16:38,201 writing manifest file '/tmp/pip-modern-metadata-i9cvuynu/varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:38,202 creating '/tmp/pip-modern-metadata-i9cvuynu/varcode-1.3.2.dist-info' 2026-04-11T23:16:38,328 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-11T23:16:38,334 Source in /tmp/pip-wheel-vcpnbcwz/varcode_4464041f775f4f31aef7d9ff05065409 has version 1.3.2, which satisfies requirement varcode==1.3.2 from https://files.pythonhosted.org/packages/9f/93/17951104b26c07832309e1efda79576fdc6ba2f8e785c1b6adb9514c3103/varcode-1.3.2.tar.gz 2026-04-11T23:16:38,335 Removed varcode==1.3.2 from https://files.pythonhosted.org/packages/9f/93/17951104b26c07832309e1efda79576fdc6ba2f8e785c1b6adb9514c3103/varcode-1.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-70y31fdz' 2026-04-11T23:16:38,340 Created temporary directory: /tmp/pip-unpack-unciqe33 2026-04-11T23:16:38,341 Building wheels for collected packages: varcode 2026-04-11T23:16:38,346 Created temporary directory: /tmp/pip-wheel-8_jenkbh 2026-04-11T23:16:38,346 Destination directory: /tmp/pip-wheel-8_jenkbh 2026-04-11T23:16:38,348 Building wheel for varcode (pyproject.toml): started 2026-04-11T23:16:38,350 Running command Building wheel for varcode (pyproject.toml) 2026-04-11T23:16:38,975 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:38,975 !! 2026-04-11T23:16:38,977 ******************************************************************************** 2026-04-11T23:16:38,977 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:38,978 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:38,980 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:38,980 ******************************************************************************** 2026-04-11T23:16:38,981 !! 2026-04-11T23:16:38,982 dist._finalize_license_expression() 2026-04-11T23:16:38,983 /tmp/pip-build-env-cm93xrpc/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-11T23:16:38,983 !! 2026-04-11T23:16:38,984 ******************************************************************************** 2026-04-11T23:16:38,985 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-11T23:16:38,986 License :: OSI Approved :: Apache Software License 2026-04-11T23:16:38,988 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-11T23:16:38,988 ******************************************************************************** 2026-04-11T23:16:38,989 !! 2026-04-11T23:16:38,989 self._finalize_license_expression() 2026-04-11T23:16:38,990 running bdist_wheel 2026-04-11T23:16:39,002 running build 2026-04-11T23:16:39,003 running build_py 2026-04-11T23:16:39,009 creating build/lib/varcode 2026-04-11T23:16:39,011 copying varcode/maf.py -> build/lib/varcode 2026-04-11T23:16:39,013 copying varcode/__init__.py -> build/lib/varcode 2026-04-11T23:16:39,016 copying varcode/version.py -> build/lib/varcode 2026-04-11T23:16:39,017 copying varcode/util.py -> build/lib/varcode 2026-04-11T23:16:39,019 copying varcode/variant.py -> build/lib/varcode 2026-04-11T23:16:39,022 copying varcode/vcf_output.py -> build/lib/varcode 2026-04-11T23:16:39,025 copying varcode/string_helpers.py -> build/lib/varcode 2026-04-11T23:16:39,026 copying varcode/reference.py -> build/lib/varcode 2026-04-11T23:16:39,029 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-04-11T23:16:39,031 copying varcode/variant_collection.py -> build/lib/varcode 2026-04-11T23:16:39,033 copying varcode/common.py -> build/lib/varcode 2026-04-11T23:16:39,035 copying varcode/vcf.py -> build/lib/varcode 2026-04-11T23:16:39,038 copying varcode/nucleotides.py -> build/lib/varcode 2026-04-11T23:16:39,040 creating build/lib/varcode/cli 2026-04-11T23:16:39,041 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-04-11T23:16:39,043 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-04-11T23:16:39,045 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-04-11T23:16:39,047 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-04-11T23:16:39,049 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-04-11T23:16:39,051 creating build/lib/varcode/effects 2026-04-11T23:16:39,053 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-04-11T23:16:39,055 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-04-11T23:16:39,057 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-04-11T23:16:39,059 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-04-11T23:16:39,062 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-04-11T23:16:39,064 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-04-11T23:16:39,067 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-04-11T23:16:39,069 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-04-11T23:16:39,071 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-04-11T23:16:39,073 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-04-11T23:16:39,075 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-04-11T23:16:39,077 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-04-11T23:16:39,080 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-04-11T23:16:39,082 running egg_info 2026-04-11T23:16:39,091 writing varcode.egg-info/PKG-INFO 2026-04-11T23:16:39,094 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-11T23:16:39,096 writing entry points to varcode.egg-info/entry_points.txt 2026-04-11T23:16:39,097 writing requirements to varcode.egg-info/requires.txt 2026-04-11T23:16:39,098 writing top-level names to varcode.egg-info/top_level.txt 2026-04-11T23:16:39,111 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:39,116 reading manifest template 'MANIFEST.in' 2026-04-11T23:16:39,117 adding license file 'LICENSE' 2026-04-11T23:16:39,122 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-11T23:16:39,127 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-04-11T23:16:39,139 installing to build/bdist.linux-armv7l/wheel 2026-04-11T23:16:39,140 running install 2026-04-11T23:16:39,162 running install_lib 2026-04-11T23:16:39,167 creating build/bdist.linux-armv7l/wheel 2026-04-11T23:16:39,170 creating build/bdist.linux-armv7l/wheel/varcode 2026-04-11T23:16:39,171 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,174 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,175 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,177 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,179 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,182 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,184 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,186 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,188 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,191 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-04-11T23:16:39,192 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,194 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,195 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,197 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,200 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,202 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-11T23:16:39,204 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-04-11T23:16:39,205 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,207 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,209 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,212 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,214 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,216 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,218 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,220 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,222 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,224 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,227 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,230 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,232 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-11T23:16:39,235 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,237 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,239 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,242 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-11T23:16:39,243 running install_egg_info 2026-04-11T23:16:39,248 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-1.3.2-py3.11.egg-info 2026-04-11T23:16:39,260 running install_scripts 2026-04-11T23:16:39,272 creating build/bdist.linux-armv7l/wheel/varcode-1.3.2.dist-info/WHEEL 2026-04-11T23:16:39,275 creating '/tmp/pip-wheel-8_jenkbh/.tmp-ngmfpfhg/varcode-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-11T23:16:39,277 adding 'varcode/__init__.py' 2026-04-11T23:16:39,279 adding 'varcode/common.py' 2026-04-11T23:16:39,280 adding 'varcode/maf.py' 2026-04-11T23:16:39,282 adding 'varcode/nucleotides.py' 2026-04-11T23:16:39,284 adding 'varcode/reference.py' 2026-04-11T23:16:39,285 adding 'varcode/string_helpers.py' 2026-04-11T23:16:39,287 adding 'varcode/ucsc_reference_names.py' 2026-04-11T23:16:39,288 adding 'varcode/util.py' 2026-04-11T23:16:39,291 adding 'varcode/variant.py' 2026-04-11T23:16:39,293 adding 'varcode/variant_collection.py' 2026-04-11T23:16:39,296 adding 'varcode/vcf.py' 2026-04-11T23:16:39,298 adding 'varcode/vcf_output.py' 2026-04-11T23:16:39,299 adding 'varcode/version.py' 2026-04-11T23:16:39,301 adding 'varcode/cli/__init__.py' 2026-04-11T23:16:39,302 adding 'varcode/cli/effects_script.py' 2026-04-11T23:16:39,303 adding 'varcode/cli/genes_script.py' 2026-04-11T23:16:39,305 adding 'varcode/cli/logging.conf' 2026-04-11T23:16:39,306 adding 'varcode/cli/variant_args.py' 2026-04-11T23:16:39,307 adding 'varcode/cli/version_info.py' 2026-04-11T23:16:39,309 adding 'varcode/effects/__init__.py' 2026-04-11T23:16:39,311 adding 'varcode/effects/common.py' 2026-04-11T23:16:39,313 adding 'varcode/effects/effect_classes.py' 2026-04-11T23:16:39,315 adding 'varcode/effects/effect_collection.py' 2026-04-11T23:16:39,317 adding 'varcode/effects/effect_helpers.py' 2026-04-11T23:16:39,319 adding 'varcode/effects/effect_ordering.py' 2026-04-11T23:16:39,322 adding 'varcode/effects/effect_prediction.py' 2026-04-11T23:16:39,324 adding 'varcode/effects/effect_prediction_coding.py' 2026-04-11T23:16:39,325 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-04-11T23:16:39,327 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-04-11T23:16:39,328 adding 'varcode/effects/mutate.py' 2026-04-11T23:16:39,330 adding 'varcode/effects/transcript_helpers.py' 2026-04-11T23:16:39,331 adding 'varcode/effects/translate.py' 2026-04-11T23:16:39,335 adding 'varcode-1.3.2.dist-info/licenses/LICENSE' 2026-04-11T23:16:39,337 adding 'varcode-1.3.2.dist-info/METADATA' 2026-04-11T23:16:39,338 adding 'varcode-1.3.2.dist-info/WHEEL' 2026-04-11T23:16:39,339 adding 'varcode-1.3.2.dist-info/entry_points.txt' 2026-04-11T23:16:39,340 adding 'varcode-1.3.2.dist-info/top_level.txt' 2026-04-11T23:16:39,341 adding 'varcode-1.3.2.dist-info/RECORD' 2026-04-11T23:16:39,344 removing build/bdist.linux-armv7l/wheel 2026-04-11T23:16:39,451 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-04-11T23:16:39,457 Created wheel for varcode: filename=varcode-1.3.2-py3-none-any.whl size=80112 sha256=0136f921f6748ca9143b4834d76c5c9caa14712339d863e1dc389c6def484cb6 2026-04-11T23:16:39,458 Stored in directory: /tmp/pip-ephem-wheel-cache-9k4jyxvf/wheels/95/98/73/05d695c3165f216e22c24417e728f4868d3ded07e9261828c0 2026-04-11T23:16:39,471 Successfully built varcode 2026-04-11T23:16:39,476 Removed build tracker: '/tmp/pip-build-tracker-70y31fdz'