2026-04-12T21:10:21,306 Created temporary directory: /tmp/pip-ephem-wheel-cache-ljnh21s2 2026-04-12T21:10:21,308 Created temporary directory: /tmp/pip-build-tracker-blv7fwiy 2026-04-12T21:10:21,309 Initialized build tracking at /tmp/pip-build-tracker-blv7fwiy 2026-04-12T21:10:21,309 Created build tracker: /tmp/pip-build-tracker-blv7fwiy 2026-04-12T21:10:21,309 Entered build tracker: /tmp/pip-build-tracker-blv7fwiy 2026-04-12T21:10:21,310 Created temporary directory: /tmp/pip-wheel-22h8osj8 2026-04-12T21:10:21,313 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-12T21:10:21,316 Created temporary directory: /tmp/pip-ephem-wheel-cache-n3qctaue 2026-04-12T21:10:21,337 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-12T21:10:21,340 2 location(s) to search for versions of pirlygenes: 2026-04-12T21:10:21,340 * https://pypi.org/simple/pirlygenes/ 2026-04-12T21:10:21,340 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T21:10:21,341 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-12T21:10:21,342 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-12T21:10:21,343 Found index url https://pypi.org/simple 2026-04-12T21:10:21,574 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-12T21:10:21,593 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,594 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-12T21:10:21,594 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,595 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-12T21:10:21,596 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,597 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-12T21:10:21,598 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,599 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from 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https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-12T21:10:21,603 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,604 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-12T21:10:21,604 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,605 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-12T21:10:21,606 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,607 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-12T21:10:21,608 Skipping link: No binaries permitted for pirlygenes: 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2026-04-12T21:10:21,611 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,612 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-12T21:10:21,613 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,614 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-12T21:10:21,617 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,618 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-12T21:10:21,619 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,620 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-12T21:10:21,621 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,621 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-12T21:10:21,622 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,623 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-12T21:10:21,624 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,625 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-12T21:10:21,626 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,627 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-12T21:10:21,627 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,628 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-12T21:10:21,632 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,633 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-12T21:10:21,633 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/28/79/9c14ed6062042d4d79ae90055559a8984cc5351b5bc6f7d0fbf4ea61ac38/pirlygenes-3.20.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.20.0 2026-04-12T21:10:21,675 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/61/e7/d40aa7ffa98773f90d6321c22659b9177692050a851d2d67c07aa81ee5e6/pirlygenes-3.20.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,676 Found link https://files.pythonhosted.org/packages/2b/0a/16ee964f0f137f22261e1505a721e07f083248edc8abeb0f4e1d71ef3288/pirlygenes-3.20.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.20.1 2026-04-12T21:10:21,677 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/04/eb/78e02ef94f290948cd816fe9be421b32541d31c8eaefb96bc52d02062c0d/pirlygenes-3.21.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,677 Found link https://files.pythonhosted.org/packages/e2/a9/b02d5e93955924794a25698bb44e4e173813273a8626832430f91c08e0de/pirlygenes-3.21.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.21.1 2026-04-12T21:10:21,678 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T21:10:21,679 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T21:10:21,680 Found index url https://www.piwheels.org/simple 2026-04-12T21:10:21,857 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-12T21:10:21,871 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.18.0-py3-none-any.whl#sha256=5b17ce44e37ecbad6a524c3d837efdb6136271e5a74d1101eed11cbf21694c8b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,872 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.17.2-py3-none-any.whl#sha256=b8c4d660cc53e55f93a9fb51559410930b87d789c3ad3f556d488f06b03827b4 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,873 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.17.1-py3-none-any.whl#sha256=922e2197ee04ccf3e6325834714159b082cbbfa2fa10a2b6162a1dd8d428311e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,874 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.17.0-py3-none-any.whl#sha256=1db815e03f17cd2c8d0dd57bee1c2eb944b1e3b228a337d93d26574536ae5014 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,874 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.7.0-py3-none-any.whl#sha256=314bf8c48fa380a0f57c6db57a0cc51ff515eb8bcbe76f35efcd288708c8db22 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,880 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.6.0-py3-none-any.whl#sha256=102d759271fe20631692f659a53b89532340331dd43449ebd9b2ecb9b1227904 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,880 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.5.0-py3-none-any.whl#sha256=ed66b0d6ee8bce3057a9eee4e3479cb013f235ada0d0b65385f2b9c28d03bf78 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,881 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.4.0-py3-none-any.whl#sha256=3163d9bc66fc382f57d04c43c6e1aa6686b86b6149cc0d0950943eae1713f354 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,882 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.3.0-py3-none-any.whl#sha256=63aa8303d4a13748d514a39bb8efe52dc60565cff43ad06dd76a653967ccb33a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,882 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.2.0-py3-none-any.whl#sha256=85fead9c44e027431aae1b82b31093d2cb7006e21cd01d33b7445eb8c9948f40 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,883 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.1.0-py3-none-any.whl#sha256=4251fa90f4f8fb242c184fedde61659c34349d8fc56ee826de4488e5c5c11039 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,883 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.0.0-py3-none-any.whl#sha256=40b6b1094f878a48f7ccf12418b061fe33d3a8fd773093523159c983af518352 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,884 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.14.0-py3-none-any.whl#sha256=057ce48582bffd44e37684068b1e64e750349609703d93d80efa875cb9b00d12 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,885 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.13.0-py3-none-any.whl#sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,885 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,886 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,886 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,890 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,891 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,891 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,895 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,896 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,896 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,897 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,898 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,898 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,899 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,899 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,900 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T21:10:21,900 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T21:10:21,901 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-12T21:10:21,927 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-12T21:10:21,947 Collecting pirlygenes==3.20.0 2026-04-12T21:10:21,949 Created temporary directory: /tmp/pip-unpack-8vkz23dv 2026-04-12T21:10:22,178 Downloading pirlygenes-3.20.0.tar.gz (7.3 MB) 2026-04-12T21:10:24,342 Added pirlygenes==3.20.0 from https://files.pythonhosted.org/packages/28/79/9c14ed6062042d4d79ae90055559a8984cc5351b5bc6f7d0fbf4ea61ac38/pirlygenes-3.20.0.tar.gz to build tracker '/tmp/pip-build-tracker-blv7fwiy' 2026-04-12T21:10:24,348 Created temporary directory: /tmp/pip-build-env-_skxljaa 2026-04-12T21:10:24,353 Installing build dependencies: started 2026-04-12T21:10:24,354 Running command pip subprocess to install build dependencies 2026-04-12T21:10:24,384 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-12T21:10:24,424 Traceback (most recent call last): 2026-04-12T21:10:24,424 File "", line 192, in addpackage 2026-04-12T21:10:24,425 File "", line 1, in 2026-04-12T21:10:24,425 ModuleNotFoundError: No module named 'outofcuda' 2026-04-12T21:10:24,427 Remainder of file ignored 2026-04-12T21:10:25,600 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-12T21:10:26,036 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-12T21:10:26,062 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-12T21:10:27,862 Collecting setuptools>=60 2026-04-12T21:10:27,938 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-12T21:10:28,320 Collecting setuptools-scm>=8.0 2026-04-12T21:10:28,336 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-12T21:10:28,425 Collecting vcs-versioning>=1.0.0.dev0 2026-04-12T21:10:28,444 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-12T21:10:28,635 Collecting packaging>=20 2026-04-12T21:10:28,653 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-12T21:10:31,660 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-12T21:10:35,396 Creating /tmp/pip-build-env-_skxljaa/overlay/local/bin 2026-04-12T21:10:35,398 changing mode of /tmp/pip-build-env-_skxljaa/overlay/local/bin/vcs-versioning to 755 2026-04-12T21:10:35,510 changing mode of /tmp/pip-build-env-_skxljaa/overlay/local/bin/setuptools-scm to 755 2026-04-12T21:10:35,543 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-12T21:10:35,827 Installing build dependencies: finished with status 'done' 2026-04-12T21:10:35,842 Getting requirements to build wheel: started 2026-04-12T21:10:35,843 Running command Getting requirements to build wheel 2026-04-12T21:10:36,570 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T21:10:36,679 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:36,680 !! 2026-04-12T21:10:36,681 ******************************************************************************** 2026-04-12T21:10:36,682 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:36,682 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:36,683 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:36,684 ******************************************************************************** 2026-04-12T21:10:36,685 !! 2026-04-12T21:10:36,685 dist._finalize_license_expression() 2026-04-12T21:10:36,686 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:36,686 !! 2026-04-12T21:10:36,687 ******************************************************************************** 2026-04-12T21:10:36,688 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:36,689 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:36,690 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:36,691 ******************************************************************************** 2026-04-12T21:10:36,692 !! 2026-04-12T21:10:36,693 self._finalize_license_expression() 2026-04-12T21:10:36,698 running egg_info 2026-04-12T21:10:36,707 writing pirlygenes.egg-info/PKG-INFO 2026-04-12T21:10:36,711 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-12T21:10:36,713 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-12T21:10:36,715 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-12T21:10:36,717 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-12T21:10:36,758 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T21:10:36,759 return get_active_overrides().subprocess_timeout 2026-04-12T21:10:36,767 listing git files failed - pretending there aren't any 2026-04-12T21:10:36,776 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:36,787 adding license file 'LICENSE' 2026-04-12T21:10:36,792 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:36,897 Getting requirements to build wheel: finished with status 'done' 2026-04-12T21:10:36,900 Created temporary directory: /tmp/pip-modern-metadata-ltqa75lj 2026-04-12T21:10:36,903 Preparing metadata (pyproject.toml): started 2026-04-12T21:10:36,904 Running command Preparing metadata (pyproject.toml) 2026-04-12T21:10:37,503 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T21:10:37,609 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:37,610 !! 2026-04-12T21:10:37,611 ******************************************************************************** 2026-04-12T21:10:37,612 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:37,613 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:37,614 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:37,614 ******************************************************************************** 2026-04-12T21:10:37,615 !! 2026-04-12T21:10:37,615 dist._finalize_license_expression() 2026-04-12T21:10:37,616 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:37,616 !! 2026-04-12T21:10:37,618 ******************************************************************************** 2026-04-12T21:10:37,618 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:37,619 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:37,620 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:37,621 ******************************************************************************** 2026-04-12T21:10:37,622 !! 2026-04-12T21:10:37,622 self._finalize_license_expression() 2026-04-12T21:10:37,624 running dist_info 2026-04-12T21:10:37,638 creating /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info 2026-04-12T21:10:37,640 writing /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/PKG-INFO 2026-04-12T21:10:37,644 writing dependency_links to /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/dependency_links.txt 2026-04-12T21:10:37,646 writing entry points to /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/entry_points.txt 2026-04-12T21:10:37,647 writing requirements to /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/requires.txt 2026-04-12T21:10:37,648 writing top-level names to /tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/top_level.txt 2026-04-12T21:10:37,650 writing manifest file '/tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:37,687 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T21:10:37,688 return get_active_overrides().subprocess_timeout 2026-04-12T21:10:37,694 listing git files failed - pretending there aren't any 2026-04-12T21:10:37,702 reading manifest file '/tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:37,704 adding license file 'LICENSE' 2026-04-12T21:10:37,708 writing manifest file '/tmp/pip-modern-metadata-ltqa75lj/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:37,709 creating '/tmp/pip-modern-metadata-ltqa75lj/pirlygenes-3.20.0.dist-info' 2026-04-12T21:10:37,844 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-12T21:10:37,850 Source in /tmp/pip-wheel-22h8osj8/pirlygenes_b13848f90ec54cf0b915d2e9594c5091 has version 3.20.0, which satisfies requirement pirlygenes==3.20.0 from https://files.pythonhosted.org/packages/28/79/9c14ed6062042d4d79ae90055559a8984cc5351b5bc6f7d0fbf4ea61ac38/pirlygenes-3.20.0.tar.gz 2026-04-12T21:10:37,851 Removed pirlygenes==3.20.0 from https://files.pythonhosted.org/packages/28/79/9c14ed6062042d4d79ae90055559a8984cc5351b5bc6f7d0fbf4ea61ac38/pirlygenes-3.20.0.tar.gz from build tracker '/tmp/pip-build-tracker-blv7fwiy' 2026-04-12T21:10:37,859 Created temporary directory: /tmp/pip-unpack-ds0bvmir 2026-04-12T21:10:37,860 Building wheels for collected packages: pirlygenes 2026-04-12T21:10:37,864 Created temporary directory: /tmp/pip-wheel-3s0pa09g 2026-04-12T21:10:37,865 Destination directory: /tmp/pip-wheel-3s0pa09g 2026-04-12T21:10:37,867 Building wheel for pirlygenes (pyproject.toml): started 2026-04-12T21:10:37,868 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-12T21:10:38,494 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T21:10:38,595 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:38,596 !! 2026-04-12T21:10:38,597 ******************************************************************************** 2026-04-12T21:10:38,597 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:38,598 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:38,599 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:38,600 ******************************************************************************** 2026-04-12T21:10:38,601 !! 2026-04-12T21:10:38,601 dist._finalize_license_expression() 2026-04-12T21:10:38,602 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T21:10:38,602 !! 2026-04-12T21:10:38,603 ******************************************************************************** 2026-04-12T21:10:38,604 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T21:10:38,605 License :: OSI Approved :: Apache Software License 2026-04-12T21:10:38,606 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T21:10:38,607 ******************************************************************************** 2026-04-12T21:10:38,608 !! 2026-04-12T21:10:38,609 self._finalize_license_expression() 2026-04-12T21:10:38,609 running bdist_wheel 2026-04-12T21:10:38,629 running build 2026-04-12T21:10:38,630 running build_py 2026-04-12T21:10:38,632 creating build/lib/pirlygenes 2026-04-12T21:10:38,634 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-12T21:10:38,636 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-12T21:10:38,639 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-12T21:10:38,640 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-12T21:10:38,643 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-12T21:10:38,645 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-12T21:10:38,648 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-12T21:10:38,651 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-12T21:10:38,655 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-12T21:10:38,657 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-12T21:10:38,660 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-12T21:10:38,663 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-12T21:10:38,666 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-12T21:10:38,670 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-12T21:10:38,673 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-12T21:10:38,674 running egg_info 2026-04-12T21:10:38,689 writing pirlygenes.egg-info/PKG-INFO 2026-04-12T21:10:38,693 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-12T21:10:38,695 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-12T21:10:38,696 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-12T21:10:38,698 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-12T21:10:38,728 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T21:10:38,728 return get_active_overrides().subprocess_timeout 2026-04-12T21:10:38,735 listing git files failed - pretending there aren't any 2026-04-12T21:10:38,743 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:38,749 adding license file 'LICENSE' 2026-04-12T21:10:38,755 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T21:10:38,757 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-12T21:10:38,758 !! 2026-04-12T21:10:38,759 ******************************************************************************** 2026-04-12T21:10:38,759 ############################ 2026-04-12T21:10:38,760 # Package would be ignored # 2026-04-12T21:10:38,760 ############################ 2026-04-12T21:10:38,761 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-12T21:10:38,761 but it is absent from setuptools' `packages` configuration. 2026-04-12T21:10:38,762 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-12T21:10:38,763 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-12T21:10:38,763 to the `packages` configuration field. 2026-04-12T21:10:38,764 Alternatively, you can also rely on setuptools' discovery methods 2026-04-12T21:10:38,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-12T21:10:38,765 instead of `find_packages(...)`/`find:`). 2026-04-12T21:10:38,766 You can read more about "package discovery" on setuptools documentation page: 2026-04-12T21:10:38,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-12T21:10:38,768 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-12T21:10:38,768 already explicitly excluding 'pirlygenes.data' via 2026-04-12T21:10:38,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-12T21:10:38,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-12T21:10:38,770 combination with a more fine grained `package-data` configuration. 2026-04-12T21:10:38,771 You can read more about "package data files" on setuptools documentation page: 2026-04-12T21:10:38,772 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-12T21:10:38,774 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-12T21:10:38,774 even if it does not contain any `.py` files. 2026-04-12T21:10:38,775 On the other hand, currently there is no concept of package data 2026-04-12T21:10:38,776 directory, all directories are treated like packages. 2026-04-12T21:10:38,776 ******************************************************************************** 2026-04-12T21:10:38,777 !! 2026-04-12T21:10:38,778 check.warn(importable) 2026-04-12T21:10:38,778 /tmp/pip-build-env-_skxljaa/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-12T21:10:38,779 !! 2026-04-12T21:10:38,780 ******************************************************************************** 2026-04-12T21:10:38,781 ############################ 2026-04-12T21:10:38,781 # Package would be ignored # 2026-04-12T21:10:38,782 ############################ 2026-04-12T21:10:38,782 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-12T21:10:38,783 but it is absent from setuptools' `packages` configuration. 2026-04-12T21:10:38,784 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-12T21:10:38,784 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-12T21:10:38,784 to the `packages` configuration field. 2026-04-12T21:10:38,785 Alternatively, you can also rely on setuptools' discovery methods 2026-04-12T21:10:38,786 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-12T21:10:38,786 instead of `find_packages(...)`/`find:`). 2026-04-12T21:10:38,787 You can read more about "package discovery" on setuptools documentation page: 2026-04-12T21:10:38,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-12T21:10:38,789 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-12T21:10:38,789 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-12T21:10:38,790 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-12T21:10:38,790 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-12T21:10:38,791 combination with a more fine grained `package-data` configuration. 2026-04-12T21:10:38,792 You can read more about "package data files" on setuptools documentation page: 2026-04-12T21:10:38,793 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-12T21:10:38,794 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-12T21:10:38,795 even if it does not contain any `.py` files. 2026-04-12T21:10:38,795 On the other hand, currently there is no concept of package data 2026-04-12T21:10:38,796 directory, all directories are treated like packages. 2026-04-12T21:10:38,796 ******************************************************************************** 2026-04-12T21:10:38,798 !! 2026-04-12T21:10:38,798 check.warn(importable) 2026-04-12T21:10:38,799 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-12T21:10:38,799 creating build/lib/pirlygenes/data 2026-04-12T21:10:38,799 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,800 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,801 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,801 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,802 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,802 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,803 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,803 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,804 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,804 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,805 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,808 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,811 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,814 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,817 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,820 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,822 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,942 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:38,944 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:39,229 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:39,231 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-12T21:10:39,239 creating build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,240 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,242 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,245 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,247 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,250 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-12T21:10:39,266 installing to build/bdist.linux-armv7l/wheel 2026-04-12T21:10:39,267 running install 2026-04-12T21:10:39,291 running install_lib 2026-04-12T21:10:39,299 creating build/bdist.linux-armv7l/wheel 2026-04-12T21:10:39,301 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-12T21:10:39,302 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,304 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,306 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,308 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,309 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,312 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,314 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-12T21:10:39,315 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,318 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,426 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,430 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,433 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,435 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,437 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,444 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,445 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,448 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,450 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,453 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,455 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,458 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,460 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,463 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,466 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,468 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,471 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,473 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,651 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T21:10:39,653 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,656 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,658 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,661 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,664 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,666 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,670 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,672 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,676 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,678 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T21:10:39,680 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-12T21:10:39,681 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T21:10:39,683 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T21:10:39,686 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T21:10:39,688 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T21:10:39,691 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T21:10:39,693 running install_egg_info 2026-04-12T21:10:39,700 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-3.20.0-py3.11.egg-info 2026-04-12T21:10:39,712 running install_scripts 2026-04-12T21:10:39,725 creating build/bdist.linux-armv7l/wheel/pirlygenes-3.20.0.dist-info/WHEEL 2026-04-12T21:10:39,728 creating '/tmp/pip-wheel-3s0pa09g/.tmp-2gfsqqps/pirlygenes-3.20.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-12T21:10:39,731 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-12T21:10:39,732 adding 'pirlygenes/__init__.py' 2026-04-12T21:10:39,734 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-12T21:10:39,743 adding 'pirlygenes/cli.py' 2026-04-12T21:10:39,746 adding 'pirlygenes/common.py' 2026-04-12T21:10:39,747 adding 'pirlygenes/gene_ids.py' 2026-04-12T21:10:39,749 adding 'pirlygenes/gene_names.py' 2026-04-12T21:10:39,753 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-12T21:10:39,755 adding 'pirlygenes/load_dataset.py' 2026-04-12T21:10:39,758 adding 'pirlygenes/load_expression.py' 2026-04-12T21:10:39,774 adding 'pirlygenes/plot.py' 2026-04-12T21:10:39,777 adding 'pirlygenes/plot_data_helpers.py' 2026-04-12T21:10:39,780 adding 'pirlygenes/sample_quality.py' 2026-04-12T21:10:39,781 adding 'pirlygenes/transcript_to_gene.py' 2026-04-12T21:10:39,791 adding 'pirlygenes/tumor_purity.py' 2026-04-12T21:10:39,793 adding 'pirlygenes/version.py' 2026-04-12T21:10:39,795 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-12T21:10:39,799 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-12T21:10:39,800 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-12T21:10:39,801 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-12T21:10:39,802 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-12T21:10:39,806 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-12T21:10:39,807 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-12T21:10:39,812 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-12T21:10:39,815 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-12T21:10:39,816 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-12T21:10:39,822 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-12T21:10:39,825 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-12T21:10:39,827 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-12T21:10:39,829 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-12T21:10:39,830 adding 'pirlygenes/data/gene-sets.csv' 2026-04-12T21:10:39,832 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-12T21:10:42,469 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-12T21:10:42,519 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-12T21:10:45,645 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-12T21:10:45,717 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-12T21:10:45,740 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-12T21:10:45,744 adding 'pirlygenes/decomposition/__init__.py' 2026-04-12T21:10:45,747 adding 'pirlygenes/decomposition/engine.py' 2026-04-12T21:10:45,749 adding 'pirlygenes/decomposition/plot.py' 2026-04-12T21:10:45,751 adding 'pirlygenes/decomposition/signature.py' 2026-04-12T21:10:45,753 adding 'pirlygenes/decomposition/templates.py' 2026-04-12T21:10:45,757 adding 'pirlygenes-3.20.0.dist-info/licenses/LICENSE' 2026-04-12T21:10:45,761 adding 'pirlygenes-3.20.0.dist-info/METADATA' 2026-04-12T21:10:45,762 adding 'pirlygenes-3.20.0.dist-info/WHEEL' 2026-04-12T21:10:45,763 adding 'pirlygenes-3.20.0.dist-info/entry_points.txt' 2026-04-12T21:10:45,764 adding 'pirlygenes-3.20.0.dist-info/top_level.txt' 2026-04-12T21:10:45,765 adding 'pirlygenes-3.20.0.dist-info/RECORD' 2026-04-12T21:10:45,834 removing build/bdist.linux-armv7l/wheel 2026-04-12T21:10:45,958 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-12T21:10:46,104 Created wheel for pirlygenes: filename=pirlygenes-3.20.0-py3-none-any.whl size=6635357 sha256=ff29ba6cf440e8202bb947f4583c987c80f95476dc13ab4d64d053bbf1e559dc 2026-04-12T21:10:46,105 Stored in directory: /tmp/pip-ephem-wheel-cache-n3qctaue/wheels/89/e0/d4/c762b962e238fd083de1a47008e921470575d00073cd8c2972 2026-04-12T21:10:46,127 Successfully built pirlygenes 2026-04-12T21:10:46,289 Removed build tracker: '/tmp/pip-build-tracker-blv7fwiy'