2026-04-12T22:25:37,108 Created temporary directory: /tmp/pip-ephem-wheel-cache-c1u913o8 2026-04-12T22:25:37,110 Created temporary directory: /tmp/pip-build-tracker-o3k9v285 2026-04-12T22:25:37,111 Initialized build tracking at /tmp/pip-build-tracker-o3k9v285 2026-04-12T22:25:37,111 Created build tracker: /tmp/pip-build-tracker-o3k9v285 2026-04-12T22:25:37,111 Entered build tracker: /tmp/pip-build-tracker-o3k9v285 2026-04-12T22:25:37,112 Created temporary directory: /tmp/pip-wheel-huefxzov 2026-04-12T22:25:37,115 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-12T22:25:37,117 Created temporary directory: /tmp/pip-ephem-wheel-cache-gdefztow 2026-04-12T22:25:37,139 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-12T22:25:37,142 2 location(s) to search for versions of pirlygenes: 2026-04-12T22:25:37,142 * https://pypi.org/simple/pirlygenes/ 2026-04-12T22:25:37,142 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T22:25:37,143 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-12T22:25:37,144 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-12T22:25:37,145 Found index url https://pypi.org/simple 2026-04-12T22:25:37,297 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-12T22:25:37,316 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,317 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-12T22:25:37,318 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,319 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-12T22:25:37,320 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,321 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-12T22:25:37,322 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,323 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from 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https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-12T22:25:37,327 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,328 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-12T22:25:37,328 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from 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2026-04-12T22:25:37,335 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,336 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-12T22:25:37,337 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,338 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-12T22:25:37,342 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,342 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-12T22:25:37,343 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,344 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-12T22:25:37,345 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,346 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-12T22:25:37,347 Skipping link: No binaries permitted for pirlygenes: 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2026-04-12T22:25:37,350 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,351 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-12T22:25:37,352 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,352 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-12T22:25:37,356 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,357 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-12T22:25:37,358 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.15.1-py3-none-any.whl#sha256=382099ae42ae099e6ee19d47847dded6aa7dea10ddfc457f0d9072be76024b70 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,596 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.15.0-py3-none-any.whl#sha256=49824052e155ec70ad9ac304e03076602cd05f7e3179093a90896576cae978df (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,597 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.14.1-py3-none-any.whl#sha256=062d277a87b1b983d7ba8e6dc670194e6000ec37acd07f00b04d3e99adbc17cc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,597 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.9.0-py3-none-any.whl#sha256=8a5d019750603a574ab513958ccda679a3fb9bc3fc5e0bf9ee3a4ab981ce11cd (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,599 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.8.0-py3-none-any.whl#sha256=8647e92b624b8f8e566be6ac2fe3db4da2c918e4b50e72f19c44ef7091244be9 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,600 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.7.0-py3-none-any.whl#sha256=314bf8c48fa380a0f57c6db57a0cc51ff515eb8bcbe76f35efcd288708c8db22 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,601 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.6.0-py3-none-any.whl#sha256=102d759271fe20631692f659a53b89532340331dd43449ebd9b2ecb9b1227904 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,601 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.5.0-py3-none-any.whl#sha256=ed66b0d6ee8bce3057a9eee4e3479cb013f235ada0d0b65385f2b9c28d03bf78 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,602 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.4.0-py3-none-any.whl#sha256=3163d9bc66fc382f57d04c43c6e1aa6686b86b6149cc0d0950943eae1713f354 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,602 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.3.0-py3-none-any.whl#sha256=63aa8303d4a13748d514a39bb8efe52dc60565cff43ad06dd76a653967ccb33a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,603 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.2.0-py3-none-any.whl#sha256=85fead9c44e027431aae1b82b31093d2cb7006e21cd01d33b7445eb8c9948f40 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,603 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.1.0-py3-none-any.whl#sha256=4251fa90f4f8fb242c184fedde61659c34349d8fc56ee826de4488e5c5c11039 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,604 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.0.0-py3-none-any.whl#sha256=40b6b1094f878a48f7ccf12418b061fe33d3a8fd773093523159c983af518352 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,604 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.14.0-py3-none-any.whl#sha256=057ce48582bffd44e37684068b1e64e750349609703d93d80efa875cb9b00d12 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,605 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.13.0-py3-none-any.whl#sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,605 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,606 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,606 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.10.0-py3-none-any.whl#sha256=393a743c2c0abdcbb8f787acfe60892c2335aa4a6be80038396dc5b27473274c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,607 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.9.0-py3-none-any.whl#sha256=ca97e53c115bc9d06958ccce0494c60d942faba3dd044564ca15284523b8ec19 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,607 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.1-py3-none-any.whl#sha256=1b346af13b190e47650615724130b80dc1044b25269d3603013a7436e13f4ab6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,608 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,609 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,609 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,610 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,610 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,611 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,611 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.0-py3-none-any.whl#sha256=7ed846a4e0950617d0103bb8a51b54f0f00bfa982caa83c9013067f52251e39e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,612 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.2-py3-none-any.whl#sha256=25793e34918b22dc36562123fdf4e753df72f9cc712aa69c1f151b96a09ab68a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,612 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,612 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,613 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,614 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,614 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,615 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,615 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,616 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,616 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,617 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,617 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,618 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,618 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,619 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-12T22:25:37,619 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-12T22:25:37,620 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-12T22:25:37,647 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-12T22:25:37,667 Collecting pirlygenes==3.21.1 2026-04-12T22:25:37,669 Created temporary directory: /tmp/pip-unpack-sbnbmvsq 2026-04-12T22:25:37,900 Downloading pirlygenes-3.21.1.tar.gz (7.3 MB) 2026-04-12T22:25:39,809 Added pirlygenes==3.21.1 from https://files.pythonhosted.org/packages/e2/a9/b02d5e93955924794a25698bb44e4e173813273a8626832430f91c08e0de/pirlygenes-3.21.1.tar.gz to build tracker '/tmp/pip-build-tracker-o3k9v285' 2026-04-12T22:25:39,815 Created temporary directory: /tmp/pip-build-env-mlw0uwlm 2026-04-12T22:25:39,819 Installing build dependencies: started 2026-04-12T22:25:39,820 Running command pip subprocess to install build dependencies 2026-04-12T22:25:40,989 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-12T22:25:41,476 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-12T22:25:41,499 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-12T22:25:43,281 Collecting setuptools>=60 2026-04-12T22:25:43,371 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-12T22:25:43,755 Collecting setuptools-scm>=8.0 2026-04-12T22:25:43,773 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-12T22:25:43,856 Collecting vcs-versioning>=1.0.0.dev0 2026-04-12T22:25:43,874 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-12T22:25:44,053 Collecting packaging>=20 2026-04-12T22:25:44,070 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-12T22:25:47,107 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-12T22:25:50,651 Creating /tmp/pip-build-env-mlw0uwlm/overlay/local/bin 2026-04-12T22:25:50,654 changing mode of /tmp/pip-build-env-mlw0uwlm/overlay/local/bin/vcs-versioning to 755 2026-04-12T22:25:50,762 changing mode of /tmp/pip-build-env-mlw0uwlm/overlay/local/bin/setuptools-scm to 755 2026-04-12T22:25:50,797 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-12T22:25:51,093 Installing build dependencies: finished with status 'done' 2026-04-12T22:25:51,111 Getting requirements to build wheel: started 2026-04-12T22:25:51,112 Running command Getting requirements to build wheel 2026-04-12T22:25:51,823 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T22:25:51,939 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:51,940 !! 2026-04-12T22:25:51,941 ******************************************************************************** 2026-04-12T22:25:51,941 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:51,942 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:51,943 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:51,944 ******************************************************************************** 2026-04-12T22:25:51,945 !! 2026-04-12T22:25:51,945 dist._finalize_license_expression() 2026-04-12T22:25:51,946 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:51,947 !! 2026-04-12T22:25:51,948 ******************************************************************************** 2026-04-12T22:25:51,949 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:51,950 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:51,951 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:51,952 ******************************************************************************** 2026-04-12T22:25:51,953 !! 2026-04-12T22:25:51,954 self._finalize_license_expression() 2026-04-12T22:25:51,959 running egg_info 2026-04-12T22:25:51,967 writing pirlygenes.egg-info/PKG-INFO 2026-04-12T22:25:51,972 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-12T22:25:51,974 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-12T22:25:51,976 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-12T22:25:51,977 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-12T22:25:52,020 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T22:25:52,021 return get_active_overrides().subprocess_timeout 2026-04-12T22:25:52,028 listing git files failed - pretending there aren't any 2026-04-12T22:25:52,037 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:52,047 adding license file 'LICENSE' 2026-04-12T22:25:52,053 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:52,157 Getting requirements to build wheel: finished with status 'done' 2026-04-12T22:25:52,161 Created temporary directory: /tmp/pip-modern-metadata-krdeigam 2026-04-12T22:25:52,164 Preparing metadata (pyproject.toml): started 2026-04-12T22:25:52,165 Running command Preparing metadata (pyproject.toml) 2026-04-12T22:25:52,790 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T22:25:52,905 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:52,905 !! 2026-04-12T22:25:52,906 ******************************************************************************** 2026-04-12T22:25:52,907 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:52,908 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:52,908 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:52,909 ******************************************************************************** 2026-04-12T22:25:52,910 !! 2026-04-12T22:25:52,910 dist._finalize_license_expression() 2026-04-12T22:25:52,911 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:52,911 !! 2026-04-12T22:25:52,912 ******************************************************************************** 2026-04-12T22:25:52,913 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:52,914 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:52,915 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:52,915 ******************************************************************************** 2026-04-12T22:25:52,916 !! 2026-04-12T22:25:52,917 self._finalize_license_expression() 2026-04-12T22:25:52,919 running dist_info 2026-04-12T22:25:52,934 creating /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info 2026-04-12T22:25:52,935 writing /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/PKG-INFO 2026-04-12T22:25:52,940 writing dependency_links to /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/dependency_links.txt 2026-04-12T22:25:52,942 writing entry points to /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/entry_points.txt 2026-04-12T22:25:52,944 writing requirements to /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/requires.txt 2026-04-12T22:25:52,945 writing top-level names to /tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/top_level.txt 2026-04-12T22:25:52,947 writing manifest file '/tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:52,985 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T22:25:52,985 return get_active_overrides().subprocess_timeout 2026-04-12T22:25:52,992 listing git files failed - pretending there aren't any 2026-04-12T22:25:52,999 reading manifest file '/tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:53,001 adding license file 'LICENSE' 2026-04-12T22:25:53,005 writing manifest file '/tmp/pip-modern-metadata-krdeigam/pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:53,006 creating '/tmp/pip-modern-metadata-krdeigam/pirlygenes-3.21.1.dist-info' 2026-04-12T22:25:53,141 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-12T22:25:53,147 Source in /tmp/pip-wheel-huefxzov/pirlygenes_cab4192a8c9d44ac921d7c64e3d14ea3 has version 3.21.1, which satisfies requirement pirlygenes==3.21.1 from https://files.pythonhosted.org/packages/e2/a9/b02d5e93955924794a25698bb44e4e173813273a8626832430f91c08e0de/pirlygenes-3.21.1.tar.gz 2026-04-12T22:25:53,148 Removed pirlygenes==3.21.1 from https://files.pythonhosted.org/packages/e2/a9/b02d5e93955924794a25698bb44e4e173813273a8626832430f91c08e0de/pirlygenes-3.21.1.tar.gz from build tracker '/tmp/pip-build-tracker-o3k9v285' 2026-04-12T22:25:53,156 Created temporary directory: /tmp/pip-unpack-89spvir4 2026-04-12T22:25:53,157 Building wheels for collected packages: pirlygenes 2026-04-12T22:25:53,161 Created temporary directory: /tmp/pip-wheel-8fwx0owo 2026-04-12T22:25:53,162 Destination directory: /tmp/pip-wheel-8fwx0owo 2026-04-12T22:25:53,164 Building wheel for pirlygenes (pyproject.toml): started 2026-04-12T22:25:53,165 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-12T22:25:53,769 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-12T22:25:53,876 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:53,877 !! 2026-04-12T22:25:53,878 ******************************************************************************** 2026-04-12T22:25:53,878 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:53,879 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:53,880 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:53,881 ******************************************************************************** 2026-04-12T22:25:53,882 !! 2026-04-12T22:25:53,882 dist._finalize_license_expression() 2026-04-12T22:25:53,883 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-12T22:25:53,884 !! 2026-04-12T22:25:53,885 ******************************************************************************** 2026-04-12T22:25:53,885 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-12T22:25:53,886 License :: OSI Approved :: Apache Software License 2026-04-12T22:25:53,887 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-12T22:25:53,888 ******************************************************************************** 2026-04-12T22:25:53,889 !! 2026-04-12T22:25:53,890 self._finalize_license_expression() 2026-04-12T22:25:53,890 running bdist_wheel 2026-04-12T22:25:53,911 running build 2026-04-12T22:25:53,912 running build_py 2026-04-12T22:25:53,913 creating build/lib/pirlygenes 2026-04-12T22:25:53,916 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-12T22:25:53,917 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-12T22:25:53,920 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-12T22:25:53,923 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-12T22:25:53,925 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-12T22:25:53,928 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-12T22:25:53,932 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-12T22:25:53,934 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-12T22:25:53,937 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-12T22:25:53,940 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-12T22:25:53,942 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-12T22:25:53,944 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-12T22:25:53,946 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-12T22:25:53,948 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-12T22:25:53,951 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-12T22:25:53,952 running egg_info 2026-04-12T22:25:53,968 writing pirlygenes.egg-info/PKG-INFO 2026-04-12T22:25:53,973 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-12T22:25:53,974 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-12T22:25:53,976 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-12T22:25:53,977 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-12T22:25:54,007 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-12T22:25:54,008 return get_active_overrides().subprocess_timeout 2026-04-12T22:25:54,014 listing git files failed - pretending there aren't any 2026-04-12T22:25:54,021 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:54,028 adding license file 'LICENSE' 2026-04-12T22:25:54,033 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-12T22:25:54,036 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-12T22:25:54,037 !! 2026-04-12T22:25:54,037 ******************************************************************************** 2026-04-12T22:25:54,038 ############################ 2026-04-12T22:25:54,038 # Package would be ignored # 2026-04-12T22:25:54,039 ############################ 2026-04-12T22:25:54,039 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-12T22:25:54,040 but it is absent from setuptools' `packages` configuration. 2026-04-12T22:25:54,041 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-12T22:25:54,042 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-12T22:25:54,042 to the `packages` configuration field. 2026-04-12T22:25:54,043 Alternatively, you can also rely on setuptools' discovery methods 2026-04-12T22:25:54,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-12T22:25:54,044 instead of `find_packages(...)`/`find:`). 2026-04-12T22:25:54,045 You can read more about "package discovery" on setuptools documentation page: 2026-04-12T22:25:54,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-12T22:25:54,047 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-12T22:25:54,048 already explicitly excluding 'pirlygenes.data' via 2026-04-12T22:25:54,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-12T22:25:54,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-12T22:25:54,050 combination with a more fine grained `package-data` configuration. 2026-04-12T22:25:54,051 You can read more about "package data files" on setuptools documentation page: 2026-04-12T22:25:54,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-12T22:25:54,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-12T22:25:54,054 even if it does not contain any `.py` files. 2026-04-12T22:25:54,054 On the other hand, currently there is no concept of package data 2026-04-12T22:25:54,055 directory, all directories are treated like packages. 2026-04-12T22:25:54,055 ******************************************************************************** 2026-04-12T22:25:54,056 !! 2026-04-12T22:25:54,057 check.warn(importable) 2026-04-12T22:25:54,057 /tmp/pip-build-env-mlw0uwlm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-12T22:25:54,058 !! 2026-04-12T22:25:54,059 ******************************************************************************** 2026-04-12T22:25:54,059 ############################ 2026-04-12T22:25:54,060 # Package would be ignored # 2026-04-12T22:25:54,060 ############################ 2026-04-12T22:25:54,061 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-12T22:25:54,061 but it is absent from setuptools' `packages` configuration. 2026-04-12T22:25:54,062 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-12T22:25:54,062 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-12T22:25:54,063 to the `packages` configuration field. 2026-04-12T22:25:54,064 Alternatively, you can also rely on setuptools' discovery methods 2026-04-12T22:25:54,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-12T22:25:54,065 instead of `find_packages(...)`/`find:`). 2026-04-12T22:25:54,065 You can read more about "package discovery" on setuptools documentation page: 2026-04-12T22:25:54,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-12T22:25:54,067 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-12T22:25:54,067 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-12T22:25:54,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-12T22:25:54,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-12T22:25:54,069 combination with a more fine grained `package-data` configuration. 2026-04-12T22:25:54,070 You can read more about "package data files" on setuptools documentation page: 2026-04-12T22:25:54,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-12T22:25:54,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-12T22:25:54,073 even if it does not contain any `.py` files. 2026-04-12T22:25:54,074 On the other hand, currently there is no concept of package data 2026-04-12T22:25:54,074 directory, all directories are treated like packages. 2026-04-12T22:25:54,075 ******************************************************************************** 2026-04-12T22:25:54,076 !! 2026-04-12T22:25:54,076 check.warn(importable) 2026-04-12T22:25:54,077 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-12T22:25:54,077 creating build/lib/pirlygenes/data 2026-04-12T22:25:54,078 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,078 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,079 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,079 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,080 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,080 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,081 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,081 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,082 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,083 copying pirlygenes/data/cancer-family-panels.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,084 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,084 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,085 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,088 copying pirlygenes/data/culture-stress-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,090 copying pirlygenes/data/degradation-gene-pairs.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,093 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,095 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,098 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,100 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,103 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,211 copying pirlygenes/data/lineage-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,213 copying pirlygenes/data/mitochondrial-genes.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,216 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,219 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,394 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,397 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,404 copying pirlygenes/data/tme-markers.csv -> build/lib/pirlygenes/data 2026-04-12T22:25:54,406 creating build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,408 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,410 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,413 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,415 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,418 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-12T22:25:54,435 installing to build/bdist.linux-armv7l/wheel 2026-04-12T22:25:54,436 running install 2026-04-12T22:25:54,459 running install_lib 2026-04-12T22:25:54,467 creating build/bdist.linux-armv7l/wheel 2026-04-12T22:25:54,469 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-12T22:25:54,470 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,472 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,475 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,478 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-12T22:25:54,479 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T22:25:54,482 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T22:25:54,484 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T22:25:54,486 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T22:25:54,488 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-12T22:25:54,490 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,492 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,496 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,498 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-12T22:25:54,500 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,502 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,504 copying build/lib/pirlygenes/data/lineage-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,507 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,510 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,512 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,707 copying build/lib/pirlygenes/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,709 copying build/lib/pirlygenes/data/tme-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,711 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,713 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,715 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,718 copying build/lib/pirlygenes/data/culture-stress-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,719 copying build/lib/pirlygenes/data/degradation-gene-pairs.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,721 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,723 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,725 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,732 copying build/lib/pirlygenes/data/cancer-family-panels.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,734 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,737 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,739 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,742 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,745 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,748 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,750 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,752 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,868 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,871 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-12T22:25:54,873 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,878 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,880 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,883 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,888 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,890 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,892 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,894 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,897 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,900 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-12T22:25:54,903 running install_egg_info 2026-04-12T22:25:54,910 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-3.21.1-py3.11.egg-info 2026-04-12T22:25:54,923 running install_scripts 2026-04-12T22:25:54,937 creating build/bdist.linux-armv7l/wheel/pirlygenes-3.21.1.dist-info/WHEEL 2026-04-12T22:25:54,940 creating '/tmp/pip-wheel-8fwx0owo/.tmp-io4e5kyx/pirlygenes-3.21.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-12T22:25:54,943 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-12T22:25:54,945 adding 'pirlygenes/__init__.py' 2026-04-12T22:25:54,947 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-12T22:25:54,956 adding 'pirlygenes/cli.py' 2026-04-12T22:25:54,958 adding 'pirlygenes/common.py' 2026-04-12T22:25:54,960 adding 'pirlygenes/gene_ids.py' 2026-04-12T22:25:54,962 adding 'pirlygenes/gene_names.py' 2026-04-12T22:25:54,967 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-12T22:25:54,969 adding 'pirlygenes/load_dataset.py' 2026-04-12T22:25:54,973 adding 'pirlygenes/load_expression.py' 2026-04-12T22:25:54,989 adding 'pirlygenes/plot.py' 2026-04-12T22:25:54,992 adding 'pirlygenes/plot_data_helpers.py' 2026-04-12T22:25:54,994 adding 'pirlygenes/sample_quality.py' 2026-04-12T22:25:54,996 adding 'pirlygenes/transcript_to_gene.py' 2026-04-12T22:25:55,006 adding 'pirlygenes/tumor_purity.py' 2026-04-12T22:25:55,008 adding 'pirlygenes/version.py' 2026-04-12T22:25:55,010 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-12T22:25:55,014 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-12T22:25:55,016 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-12T22:25:55,017 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-12T22:25:55,018 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-12T22:25:55,022 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-12T22:25:55,023 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-12T22:25:55,028 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-12T22:25:55,031 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-12T22:25:55,032 adding 'pirlygenes/data/cancer-family-panels.csv' 2026-04-12T22:25:55,034 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-12T22:25:55,040 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-12T22:25:55,043 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-12T22:25:55,044 adding 'pirlygenes/data/culture-stress-genes.csv' 2026-04-12T22:25:55,046 adding 'pirlygenes/data/degradation-gene-pairs.csv' 2026-04-12T22:25:55,048 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-12T22:25:55,050 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-12T22:25:55,051 adding 'pirlygenes/data/gene-sets.csv' 2026-04-12T22:25:55,053 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-12T22:25:57,681 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-12T22:25:57,730 adding 'pirlygenes/data/lineage-genes.csv' 2026-04-12T22:25:57,731 adding 'pirlygenes/data/mitochondrial-genes.csv' 2026-04-12T22:25:57,733 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-12T22:26:00,837 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-12T22:26:00,909 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-12T22:26:00,931 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-12T22:26:00,934 adding 'pirlygenes/data/tme-markers.csv' 2026-04-12T22:26:00,936 adding 'pirlygenes/decomposition/__init__.py' 2026-04-12T22:26:00,940 adding 'pirlygenes/decomposition/engine.py' 2026-04-12T22:26:00,942 adding 'pirlygenes/decomposition/plot.py' 2026-04-12T22:26:00,944 adding 'pirlygenes/decomposition/signature.py' 2026-04-12T22:26:00,946 adding 'pirlygenes/decomposition/templates.py' 2026-04-12T22:26:00,949 adding 'pirlygenes-3.21.1.dist-info/licenses/LICENSE' 2026-04-12T22:26:00,953 adding 'pirlygenes-3.21.1.dist-info/METADATA' 2026-04-12T22:26:00,954 adding 'pirlygenes-3.21.1.dist-info/WHEEL' 2026-04-12T22:26:00,955 adding 'pirlygenes-3.21.1.dist-info/entry_points.txt' 2026-04-12T22:26:00,956 adding 'pirlygenes-3.21.1.dist-info/top_level.txt' 2026-04-12T22:26:00,958 adding 'pirlygenes-3.21.1.dist-info/RECORD' 2026-04-12T22:26:01,035 removing build/bdist.linux-armv7l/wheel 2026-04-12T22:26:01,231 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-12T22:26:01,379 Created wheel for pirlygenes: filename=pirlygenes-3.21.1-py3-none-any.whl size=6641327 sha256=a0c6e27c92f41e48ffa950b1c827e66922436b8fc1f3e1f3ea3be005182a4098 2026-04-12T22:26:01,380 Stored in directory: /tmp/pip-ephem-wheel-cache-gdefztow/wheels/61/aa/00/ac4377a612746c8b176d7bb9dde0868847b4df3c7a41e306ce 2026-04-12T22:26:01,399 Successfully built pirlygenes 2026-04-12T22:26:01,552 Removed build tracker: '/tmp/pip-build-tracker-o3k9v285'