2026-04-13T12:54:51,629 Created temporary directory: /tmp/pip-ephem-wheel-cache-e8xmowea
2026-04-13T12:54:51,631 Created temporary directory: /tmp/pip-build-tracker-09ftb4dw
2026-04-13T12:54:51,632 Initialized build tracking at /tmp/pip-build-tracker-09ftb4dw
2026-04-13T12:54:51,632 Created build tracker: /tmp/pip-build-tracker-09ftb4dw
2026-04-13T12:54:51,633 Entered build tracker: /tmp/pip-build-tracker-09ftb4dw
2026-04-13T12:54:51,633 Created temporary directory: /tmp/pip-wheel-2nwih2fp
2026-04-13T12:54:51,636 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-13T12:54:51,639 Created temporary directory: /tmp/pip-ephem-wheel-cache-iusxm4dy
2026-04-13T12:54:51,662 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-13T12:54:51,666 2 location(s) to search for versions of litgenemap:
2026-04-13T12:54:51,666 * https://pypi.org/simple/litgenemap/
2026-04-13T12:54:51,666 * https://www.piwheels.org/simple/litgenemap/
2026-04-13T12:54:51,667 Fetching project page and analyzing links: https://pypi.org/simple/litgenemap/
2026-04-13T12:54:51,667 Getting page https://pypi.org/simple/litgenemap/
2026-04-13T12:54:51,669 Found index url https://pypi.org/simple
2026-04-13T12:54:51,893 Fetched page https://pypi.org/simple/litgenemap/ as application/vnd.pypi.simple.v1+json
2026-04-13T12:54:51,894   Skipping link: No binaries permitted for litgenemap: https://files.pythonhosted.org/packages/bd/0a/753586c88837eda4172a9b60aabc6f08c234d2ed46e68a297aa83300cfa8/litgenemap-0.3.0-py3-none-any.whl (from https://pypi.org/simple/litgenemap/) (requires-python:>=3.10)
2026-04-13T12:54:51,895   Found link https://files.pythonhosted.org/packages/30/af/9042cb0e0a7657381fac8a0258c2256aa676c7769ea3fa406f05080ac141/litgenemap-0.3.0.tar.gz (from https://pypi.org/simple/litgenemap/) (requires-python:>=3.10), version: 0.3.0
2026-04-13T12:54:51,896 Fetching project page and analyzing links: https://www.piwheels.org/simple/litgenemap/
2026-04-13T12:54:51,897 Getting page https://www.piwheels.org/simple/litgenemap/
2026-04-13T12:54:51,898 Found index url https://www.piwheels.org/simple
2026-04-13T12:54:52,063 Fetched page https://www.piwheels.org/simple/litgenemap/ as text/html
2026-04-13T12:54:52,064 Skipping link: not a file: https://www.piwheels.org/simple/litgenemap/
2026-04-13T12:54:52,065 Skipping link: not a file: https://pypi.org/simple/litgenemap/
2026-04-13T12:54:52,085 Given no hashes to check 1 links for project 'litgenemap': discarding no candidates
2026-04-13T12:54:52,105 Collecting litgenemap==0.3.0
2026-04-13T12:54:52,107   Created temporary directory: /tmp/pip-unpack-m_hep3oy
2026-04-13T12:54:52,330   Downloading litgenemap-0.3.0.tar.gz (16 kB)
2026-04-13T12:54:52,381   Added litgenemap==0.3.0 from https://files.pythonhosted.org/packages/30/af/9042cb0e0a7657381fac8a0258c2256aa676c7769ea3fa406f05080ac141/litgenemap-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-09ftb4dw'
2026-04-13T12:54:52,387   Created temporary directory: /tmp/pip-build-env-nh9zokfo
2026-04-13T12:54:52,391   Installing build dependencies: started
2026-04-13T12:54:52,392   Running command pip subprocess to install build dependencies
2026-04-13T12:54:53,564   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-13T12:54:54,062   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-13T12:54:54,085   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-13T12:54:55,931   Collecting setuptools>=69
2026-04-13T12:54:56,005     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-13T12:54:56,283   Collecting wheel
2026-04-13T12:54:56,298     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-04-13T12:54:56,490   Collecting packaging>=24.0
2026-04-13T12:54:56,508     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-04-13T12:54:59,487   Installing collected packages: setuptools, packaging, wheel
2026-04-13T12:55:04,592     Creating /tmp/pip-build-env-nh9zokfo/overlay/local/bin
2026-04-13T12:55:04,593     changing mode of /tmp/pip-build-env-nh9zokfo/overlay/local/bin/wheel to 755
2026-04-13T12:55:04,614   Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3
2026-04-13T12:55:04,894   Installing build dependencies: finished with status 'done'
2026-04-13T12:55:04,901   Getting requirements to build wheel: started
2026-04-13T12:55:04,902   Running command Getting requirements to build wheel
2026-04-13T12:55:05,504   /tmp/pip-build-env-nh9zokfo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:55: SetuptoolsDeprecationWarning: 'tool.setuptools.license-files' is deprecated in favor of 'project.license-files' (available on setuptools>=77.0.0).
2026-04-13T12:55:05,504   !!

2026-04-13T12:55:05,505           ********************************************************************************

2026-04-13T12:55:05,506           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-13T12:55:05,507           or your builds will no longer be supported.

2026-04-13T12:55:05,508           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license-files for details.
2026-04-13T12:55:05,509           ********************************************************************************

2026-04-13T12:55:05,510   !!
2026-04-13T12:55:05,511     _apply_tool_table(dist, config, filename)
2026-04-13T12:55:05,591   running egg_info
2026-04-13T12:55:05,598   writing src/litgenemap.egg-info/PKG-INFO
2026-04-13T12:55:05,601   writing dependency_links to src/litgenemap.egg-info/dependency_links.txt
2026-04-13T12:55:05,603   writing entry points to src/litgenemap.egg-info/entry_points.txt
2026-04-13T12:55:05,605   writing requirements to src/litgenemap.egg-info/requires.txt
2026-04-13T12:55:05,606   writing top-level names to src/litgenemap.egg-info/top_level.txt
2026-04-13T12:55:05,627   reading manifest file 'src/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:05,630   reading manifest template 'MANIFEST.in'
2026-04-13T12:55:05,632   adding license file 'LICENSE'
2026-04-13T12:55:05,636   writing manifest file 'src/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:05,732   Getting requirements to build wheel: finished with status 'done'
2026-04-13T12:55:05,736   Created temporary directory: /tmp/pip-modern-metadata-pcydh461
2026-04-13T12:55:05,738   Preparing metadata (pyproject.toml): started
2026-04-13T12:55:05,739   Running command Preparing metadata (pyproject.toml)
2026-04-13T12:55:06,300   /tmp/pip-build-env-nh9zokfo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:55: SetuptoolsDeprecationWarning: 'tool.setuptools.license-files' is deprecated in favor of 'project.license-files' (available on setuptools>=77.0.0).
2026-04-13T12:55:06,300   !!

2026-04-13T12:55:06,302           ********************************************************************************

2026-04-13T12:55:06,303           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-13T12:55:06,303           or your builds will no longer be supported.

2026-04-13T12:55:06,304           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license-files for details.
2026-04-13T12:55:06,305           ********************************************************************************

2026-04-13T12:55:06,306   !!
2026-04-13T12:55:06,307     _apply_tool_table(dist, config, filename)
2026-04-13T12:55:06,380   running dist_info
2026-04-13T12:55:06,391   creating /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info
2026-04-13T12:55:06,392   writing /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/PKG-INFO
2026-04-13T12:55:06,395   writing dependency_links to /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/dependency_links.txt
2026-04-13T12:55:06,396   writing entry points to /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/entry_points.txt
2026-04-13T12:55:06,398   writing requirements to /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/requires.txt
2026-04-13T12:55:06,399   writing top-level names to /tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/top_level.txt
2026-04-13T12:55:06,400   writing manifest file '/tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:06,419   reading manifest file '/tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:06,420   reading manifest template 'MANIFEST.in'
2026-04-13T12:55:06,423   adding license file 'LICENSE'
2026-04-13T12:55:06,426   writing manifest file '/tmp/pip-modern-metadata-pcydh461/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:06,427   creating '/tmp/pip-modern-metadata-pcydh461/litgenemap-0.3.0.dist-info'
2026-04-13T12:55:06,550   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-13T12:55:06,555   Source in /tmp/pip-wheel-2nwih2fp/litgenemap_cc161f51b9734606a0fb3b9cab84f568 has version 0.3.0, which satisfies requirement litgenemap==0.3.0 from https://files.pythonhosted.org/packages/30/af/9042cb0e0a7657381fac8a0258c2256aa676c7769ea3fa406f05080ac141/litgenemap-0.3.0.tar.gz
2026-04-13T12:55:06,556   Removed litgenemap==0.3.0 from https://files.pythonhosted.org/packages/30/af/9042cb0e0a7657381fac8a0258c2256aa676c7769ea3fa406f05080ac141/litgenemap-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-09ftb4dw'
2026-04-13T12:55:06,562 Created temporary directory: /tmp/pip-unpack-jhzmvu5f
2026-04-13T12:55:06,563 Building wheels for collected packages: litgenemap
2026-04-13T12:55:06,567   Created temporary directory: /tmp/pip-wheel-wjagg2qk
2026-04-13T12:55:06,568   Destination directory: /tmp/pip-wheel-wjagg2qk
2026-04-13T12:55:06,570   Building wheel for litgenemap (pyproject.toml): started
2026-04-13T12:55:06,571   Running command Building wheel for litgenemap (pyproject.toml)
2026-04-13T12:55:07,128   /tmp/pip-build-env-nh9zokfo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:55: SetuptoolsDeprecationWarning: 'tool.setuptools.license-files' is deprecated in favor of 'project.license-files' (available on setuptools>=77.0.0).
2026-04-13T12:55:07,129   !!

2026-04-13T12:55:07,130           ********************************************************************************

2026-04-13T12:55:07,131           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-13T12:55:07,132           or your builds will no longer be supported.

2026-04-13T12:55:07,133           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license-files for details.
2026-04-13T12:55:07,133           ********************************************************************************

2026-04-13T12:55:07,134   !!
2026-04-13T12:55:07,135     _apply_tool_table(dist, config, filename)
2026-04-13T12:55:07,200   running bdist_wheel
2026-04-13T12:55:07,217   running build
2026-04-13T12:55:07,218   running build_py
2026-04-13T12:55:07,224   creating build/lib/litgenemap
2026-04-13T12:55:07,227   copying src/litgenemap/extract.py -> build/lib/litgenemap
2026-04-13T12:55:07,230   copying src/litgenemap/stats.py -> build/lib/litgenemap
2026-04-13T12:55:07,232   copying src/litgenemap/hgnc.py -> build/lib/litgenemap
2026-04-13T12:55:07,234   copying src/litgenemap/cli.py -> build/lib/litgenemap
2026-04-13T12:55:07,236   copying src/litgenemap/pipeline.py -> build/lib/litgenemap
2026-04-13T12:55:07,238   copying src/litgenemap/network.py -> build/lib/litgenemap
2026-04-13T12:55:07,240   copying src/litgenemap/io.py -> build/lib/litgenemap
2026-04-13T12:55:07,242   copying src/litgenemap/__init__.py -> build/lib/litgenemap
2026-04-13T12:55:07,244   copying src/litgenemap/export.py -> build/lib/litgenemap
2026-04-13T12:55:07,245   running egg_info
2026-04-13T12:55:07,255   writing src/litgenemap.egg-info/PKG-INFO
2026-04-13T12:55:07,258   writing dependency_links to src/litgenemap.egg-info/dependency_links.txt
2026-04-13T12:55:07,260   writing entry points to src/litgenemap.egg-info/entry_points.txt
2026-04-13T12:55:07,261   writing requirements to src/litgenemap.egg-info/requires.txt
2026-04-13T12:55:07,263   writing top-level names to src/litgenemap.egg-info/top_level.txt
2026-04-13T12:55:07,272   reading manifest file 'src/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:07,275   reading manifest template 'MANIFEST.in'
2026-04-13T12:55:07,277   adding license file 'LICENSE'
2026-04-13T12:55:07,280   writing manifest file 'src/litgenemap.egg-info/SOURCES.txt'
2026-04-13T12:55:07,284   creating build/lib/litgenemap/data
2026-04-13T12:55:07,285   copying src/litgenemap/data/default_blacklist.txt -> build/lib/litgenemap/data
2026-04-13T12:55:07,297   installing to build/bdist.linux-armv7l/wheel
2026-04-13T12:55:07,298   running install
2026-04-13T12:55:07,321   running install_lib
2026-04-13T12:55:07,327   creating build/bdist.linux-armv7l/wheel
2026-04-13T12:55:07,330   creating build/bdist.linux-armv7l/wheel/litgenemap
2026-04-13T12:55:07,331   copying build/lib/litgenemap/extract.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,334   copying build/lib/litgenemap/stats.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,336   copying build/lib/litgenemap/hgnc.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,338   copying build/lib/litgenemap/cli.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,342   creating build/bdist.linux-armv7l/wheel/litgenemap/data
2026-04-13T12:55:07,344   copying build/lib/litgenemap/data/default_blacklist.txt -> build/bdist.linux-armv7l/wheel/./litgenemap/data
2026-04-13T12:55:07,347   copying build/lib/litgenemap/pipeline.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,350   copying build/lib/litgenemap/network.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,353   copying build/lib/litgenemap/io.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,357   copying build/lib/litgenemap/__init__.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,359   copying build/lib/litgenemap/export.py -> build/bdist.linux-armv7l/wheel/./litgenemap
2026-04-13T12:55:07,361   running install_egg_info
2026-04-13T12:55:07,366   Copying src/litgenemap.egg-info to build/bdist.linux-armv7l/wheel/./litgenemap-0.3.0-py3.11.egg-info
2026-04-13T12:55:07,392   running install_scripts
2026-04-13T12:55:07,416   creating build/bdist.linux-armv7l/wheel/litgenemap-0.3.0.dist-info/WHEEL
2026-04-13T12:55:07,419   creating '/tmp/pip-wheel-wjagg2qk/.tmp-69d0cxpm/litgenemap-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-13T12:55:07,422   adding 'litgenemap/__init__.py'
2026-04-13T12:55:07,424   adding 'litgenemap/cli.py'
2026-04-13T12:55:07,425   adding 'litgenemap/export.py'
2026-04-13T12:55:07,427   adding 'litgenemap/extract.py'
2026-04-13T12:55:07,429   adding 'litgenemap/hgnc.py'
2026-04-13T12:55:07,431   adding 'litgenemap/io.py'
2026-04-13T12:55:07,433   adding 'litgenemap/network.py'
2026-04-13T12:55:07,435   adding 'litgenemap/pipeline.py'
2026-04-13T12:55:07,437   adding 'litgenemap/stats.py'
2026-04-13T12:55:07,440   adding 'litgenemap/data/default_blacklist.txt'
2026-04-13T12:55:07,444   adding 'litgenemap-0.3.0.dist-info/licenses/LICENSE'
2026-04-13T12:55:07,446   adding 'litgenemap-0.3.0.dist-info/METADATA'
2026-04-13T12:55:07,447   adding 'litgenemap-0.3.0.dist-info/WHEEL'
2026-04-13T12:55:07,449   adding 'litgenemap-0.3.0.dist-info/entry_points.txt'
2026-04-13T12:55:07,450   adding 'litgenemap-0.3.0.dist-info/top_level.txt'
2026-04-13T12:55:07,451   adding 'litgenemap-0.3.0.dist-info/RECORD'
2026-04-13T12:55:07,453   removing build/bdist.linux-armv7l/wheel
2026-04-13T12:55:07,557   Building wheel for litgenemap (pyproject.toml): finished with status 'done'
2026-04-13T12:55:07,561   Created wheel for litgenemap: filename=litgenemap-0.3.0-py3-none-any.whl size=16785 sha256=e38ab132d3641cac2a44f2c30748b498eb78d6bb9f2f8ae29da7369ba97212bd
2026-04-13T12:55:07,562   Stored in directory: /tmp/pip-ephem-wheel-cache-iusxm4dy/wheels/70/38/1d/383ebe02d4a2eb9d0a7181775997b8674158043e59a75a7c44
2026-04-13T12:55:07,574 Successfully built litgenemap
2026-04-13T12:55:07,578 Removed build tracker: '/tmp/pip-build-tracker-09ftb4dw'