2026-04-13T19:41:02,504 Created temporary directory: /tmp/pip-ephem-wheel-cache-3x5hs962
2026-04-13T19:41:02,506 Created temporary directory: /tmp/pip-build-tracker-ukom60w8
2026-04-13T19:41:02,507 Initialized build tracking at /tmp/pip-build-tracker-ukom60w8
2026-04-13T19:41:02,507 Created build tracker: /tmp/pip-build-tracker-ukom60w8
2026-04-13T19:41:02,507 Entered build tracker: /tmp/pip-build-tracker-ukom60w8
2026-04-13T19:41:02,508 Created temporary directory: /tmp/pip-wheel-0ya4hjmy
2026-04-13T19:41:02,512 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-13T19:41:02,514 Created temporary directory: /tmp/pip-ephem-wheel-cache-8kyvtmt4
2026-04-13T19:41:02,535 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-13T19:41:02,539 2 location(s) to search for versions of acellera-htmd:
2026-04-13T19:41:02,539 * https://pypi.org/simple/acellera-htmd/
2026-04-13T19:41:02,539 * https://www.piwheels.org/simple/acellera-htmd/
2026-04-13T19:41:02,540 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-04-13T19:41:02,541 Getting page https://pypi.org/simple/acellera-htmd/
2026-04-13T19:41:02,542 Found index url https://pypi.org/simple
2026-04-13T19:41:02,771 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-04-13T19:41:02,774   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-04-13T19:41:02,776   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-04-13T19:41:02,777   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-04-13T19:41:02,778   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-04-13T19:41:02,779   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-04-13T19:41:02,781   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-04-13T19:41:02,782   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-04-13T19:41:02,784   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-04-13T19:41:02,785 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-04-13T19:41:02,786 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-04-13T19:41:02,788 Found index url https://www.piwheels.org/simple
2026-04-13T19:41:02,973 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-04-13T19:41:02,975   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-13T19:41:02,976   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-13T19:41:02,977   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-13T19:41:02,977   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-04-13T19:41:02,978 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-04-13T19:41:02,978 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-04-13T19:41:02,999 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-04-13T19:41:03,018 Collecting acellera-htmd==2.6.1
2026-04-13T19:41:03,020   Created temporary directory: /tmp/pip-unpack-ki7zvzzk
2026-04-13T19:41:03,173   Downloading acellera_htmd-2.6.1.tar.gz (4.0 MB)
2026-04-13T19:41:04,978   Added acellera-htmd==2.6.1 from https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-ukom60w8'
2026-04-13T19:41:04,984   Created temporary directory: /tmp/pip-build-env-99ze1ijo
2026-04-13T19:41:04,988   Installing build dependencies: started
2026-04-13T19:41:04,989   Running command pip subprocess to install build dependencies
2026-04-13T19:41:06,142   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-13T19:41:06,632   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-13T19:41:06,655   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-13T19:41:08,423   Collecting setuptools
2026-04-13T19:41:08,506     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-13T19:41:08,887   Collecting setuptools-scm>=8
2026-04-13T19:41:08,904     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-04-13T19:41:08,990   Collecting vcs-versioning>=1.0.0.dev0
2026-04-13T19:41:09,009     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-04-13T19:41:09,193   Collecting packaging>=20
2026-04-13T19:41:09,209     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-04-13T19:41:12,237   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-04-13T19:41:15,921     Creating /tmp/pip-build-env-99ze1ijo/overlay/local/bin
2026-04-13T19:41:15,924     changing mode of /tmp/pip-build-env-99ze1ijo/overlay/local/bin/vcs-versioning to 755
2026-04-13T19:41:16,040     changing mode of /tmp/pip-build-env-99ze1ijo/overlay/local/bin/setuptools-scm to 755
2026-04-13T19:41:16,067   Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-04-13T19:41:16,353   Installing build dependencies: finished with status 'done'
2026-04-13T19:41:16,359   Getting requirements to build wheel: started
2026-04-13T19:41:16,360   Running command Getting requirements to build wheel
2026-04-13T19:41:17,199   running egg_info
2026-04-13T19:41:17,207   writing acellera_htmd.egg-info/PKG-INFO
2026-04-13T19:41:17,212   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-13T19:41:17,214   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-13T19:41:17,218   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-13T19:41:17,220   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-13T19:41:17,308   /tmp/pip-build-env-99ze1ijo/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-13T19:41:17,309     return get_active_overrides().subprocess_timeout
2026-04-13T19:41:17,317   listing git files failed - pretending there aren't any
2026-04-13T19:41:17,322   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:17,342   reading manifest template 'MANIFEST.in'
2026-04-13T19:41:17,361   no previously-included directories found matching 'htmd/data'
2026-04-13T19:41:17,362   no previously-included directories found matching '.github'
2026-04-13T19:41:17,363   no previously-included directories found matching 'doc'
2026-04-13T19:41:17,364   no previously-included directories found matching 'package'
2026-04-13T19:41:17,365   no previously-included directories found matching 'tests'
2026-04-13T19:41:17,367   no previously-included directories found matching 'tutorials'
2026-04-13T19:41:17,368   warning: no previously-included files found matching 'Makefile'
2026-04-13T19:41:17,368   adding license file 'LICENSE'
2026-04-13T19:41:17,390   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:17,495   Getting requirements to build wheel: finished with status 'done'
2026-04-13T19:41:17,498   Created temporary directory: /tmp/pip-modern-metadata-k2xqe86g
2026-04-13T19:41:17,501   Preparing metadata (pyproject.toml): started
2026-04-13T19:41:17,502   Running command Preparing metadata (pyproject.toml)
2026-04-13T19:41:18,284   running dist_info
2026-04-13T19:41:18,298   creating /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info
2026-04-13T19:41:18,299   writing /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/PKG-INFO
2026-04-13T19:41:18,304   writing dependency_links to /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/dependency_links.txt
2026-04-13T19:41:18,305   writing entry points to /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/entry_points.txt
2026-04-13T19:41:18,309   writing requirements to /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/requires.txt
2026-04-13T19:41:18,310   writing top-level names to /tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/top_level.txt
2026-04-13T19:41:18,312   writing manifest file '/tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:18,387   /tmp/pip-build-env-99ze1ijo/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-13T19:41:18,387     return get_active_overrides().subprocess_timeout
2026-04-13T19:41:18,394   listing git files failed - pretending there aren't any
2026-04-13T19:41:18,399   reading manifest file '/tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:18,401   reading manifest template 'MANIFEST.in'
2026-04-13T19:41:18,419   no previously-included directories found matching 'htmd/data'
2026-04-13T19:41:18,419   no previously-included directories found matching '.github'
2026-04-13T19:41:18,420   no previously-included directories found matching 'doc'
2026-04-13T19:41:18,422   no previously-included directories found matching 'package'
2026-04-13T19:41:18,423   no previously-included directories found matching 'tests'
2026-04-13T19:41:18,424   no previously-included directories found matching 'tutorials'
2026-04-13T19:41:18,425   warning: no previously-included files found matching 'Makefile'
2026-04-13T19:41:18,425   adding license file 'LICENSE'
2026-04-13T19:41:18,442   writing manifest file '/tmp/pip-modern-metadata-k2xqe86g/acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:18,444   creating '/tmp/pip-modern-metadata-k2xqe86g/acellera_htmd-2.6.1.dist-info'
2026-04-13T19:41:18,578   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-13T19:41:18,583   Source in /tmp/pip-wheel-0ya4hjmy/acellera-htmd_12beaa1db3ba481bae7976b7311ec507 has version 2.6.1, which satisfies requirement acellera-htmd==2.6.1 from https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz
2026-04-13T19:41:18,583   Removed acellera-htmd==2.6.1 from https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-ukom60w8'
2026-04-13T19:41:18,589 Created temporary directory: /tmp/pip-unpack-xjboyw2r
2026-04-13T19:41:18,590 Building wheels for collected packages: acellera-htmd
2026-04-13T19:41:18,594   Created temporary directory: /tmp/pip-wheel-4izgf5jr
2026-04-13T19:41:18,594   Destination directory: /tmp/pip-wheel-4izgf5jr
2026-04-13T19:41:18,596   Building wheel for acellera-htmd (pyproject.toml): started
2026-04-13T19:41:18,598   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-04-13T19:41:19,334   running bdist_wheel
2026-04-13T19:41:19,359   running build
2026-04-13T19:41:19,359   running build_py
2026-04-13T19:41:19,361   creating build/lib/htmd
2026-04-13T19:41:19,363   copying htmd/session.py -> build/lib/htmd
2026-04-13T19:41:19,366   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-04-13T19:41:19,368   copying htmd/pathplanning.py -> build/lib/htmd
2026-04-13T19:41:19,371   copying htmd/license.py -> build/lib/htmd
2026-04-13T19:41:19,373   copying htmd/util.py -> build/lib/htmd
2026-04-13T19:41:19,375   copying htmd/simlist.py -> build/lib/htmd
2026-04-13T19:41:19,378   copying htmd/model.py -> build/lib/htmd
2026-04-13T19:41:19,381   copying htmd/units.py -> build/lib/htmd
2026-04-13T19:41:19,383   copying htmd/ui.py -> build/lib/htmd
2026-04-13T19:41:19,385   copying htmd/latest.py -> build/lib/htmd
2026-04-13T19:41:19,387   copying htmd/versionwarnings.py -> build/lib/htmd
2026-04-13T19:41:19,389   copying htmd/home.py -> build/lib/htmd
2026-04-13T19:41:19,391   copying htmd/decorators.py -> build/lib/htmd
2026-04-13T19:41:19,393   copying htmd/config.py -> build/lib/htmd
2026-04-13T19:41:19,395   copying htmd/parallelprogress.py -> build/lib/htmd
2026-04-13T19:41:19,396   copying htmd/dock.py -> build/lib/htmd
2026-04-13T19:41:19,399   copying htmd/metricdata.py -> build/lib/htmd
2026-04-13T19:41:19,402   copying htmd/__init__.py -> build/lib/htmd
2026-04-13T19:41:19,404   copying htmd/kinetics.py -> build/lib/htmd
2026-04-13T19:41:19,406   copying htmd/mutualinformation.py -> build/lib/htmd
2026-04-13T19:41:19,409   creating build/lib/htmd/builder
2026-04-13T19:41:19,410   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-04-13T19:41:19,413   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-04-13T19:41:19,415   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-04-13T19:41:19,418   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-04-13T19:41:19,421   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-04-13T19:41:19,424   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-04-13T19:41:19,427   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-04-13T19:41:19,429   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-04-13T19:41:19,432   creating build/lib/htmd/membranebuilder
2026-04-13T19:41:19,433   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-04-13T19:41:19,435   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-04-13T19:41:19,437   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-04-13T19:41:19,439   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-04-13T19:41:19,441   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-04-13T19:41:19,444   creating build/lib/htmd/projections
2026-04-13T19:41:19,444   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-04-13T19:41:19,447   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-04-13T19:41:19,449   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-04-13T19:41:19,451   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-04-13T19:41:19,453   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-04-13T19:41:19,455   creating build/lib/htmd/clustering
2026-04-13T19:41:19,456   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-04-13T19:41:19,459   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-04-13T19:41:19,461   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-04-13T19:41:19,463   creating build/lib/htmd/adaptive
2026-04-13T19:41:19,464   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,466   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,468   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,471   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,474   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,476   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,479   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-04-13T19:41:19,514   creating build/lib/htmd/share
2026-04-13T19:41:19,515   copying htmd/share/license-checker -> build/lib/htmd/share
2026-04-13T19:41:19,522   creating build/lib/htmd/share/builder
2026-04-13T19:41:19,523   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-04-13T19:41:19,525   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-04-13T19:41:19,528   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-04-13T19:41:19,535   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,537   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,539   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,541   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,543   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,545   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,548   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,550   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,552   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,554   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,556   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,558   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,561   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,563   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,565   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,567   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,569   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,571   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,573   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,575   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,577   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,579   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,581   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,583   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,586   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,588   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,590   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,592   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,595   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,597   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,599   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,601   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,604   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,606   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,608   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,610   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,613   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,615   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,617   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,620   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,622   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,624   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,627   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,631   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,633   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,635   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,638   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,640   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,642   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,644   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,647   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,651   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,654   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,656   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,658   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,660   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,663   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,665   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,667   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,670   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,672   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,674   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,676   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,679   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,681   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,683   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,686   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,688   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,690   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,693   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,695   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,697   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,700   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,702   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,704   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,707   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,709   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,711   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,713   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,715   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,717   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,720   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,722   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,725   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,727   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,729   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,732   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,734   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,737   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,739   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,742   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,745   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,747   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,749   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,752   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,754   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,756   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,758   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,760   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,763   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,765   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,767   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,770   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,772   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,774   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,777   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,779   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,781   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,783   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,785   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,787   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,789   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,792   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,794   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,796   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,798   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,800   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,803   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,806   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,808   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,810   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,813   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,815   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,817   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,819   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,821   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,824   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,826   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,828   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,830   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,833   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,835   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,837   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:19,840   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,841   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,843   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,846   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,849   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,851   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,853   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,855   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,858   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,860   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,862   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,865   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,867   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,869   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,872   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,874   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,877   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,879   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,881   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,883   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,885   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,888   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,890   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:19,892   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,893   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,896   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,898   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,901   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,903   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,906   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,908   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,911   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,913   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,916   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,918   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,920   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,922   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,924   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,927   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,929   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,931   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,933   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,935   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,937   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,939   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,943   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,945   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,947   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,949   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,951   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,954   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,956   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,958   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,960   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,962   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,964   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,966   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,969   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,971   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,973   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,975   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,977   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,979   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,982   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,984   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,986   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,988   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,990   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,992   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,994   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,996   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:19,998   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:20,000   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,001   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,004   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,006   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,010   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,013   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,015   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:20,017   creating build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,018   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,020   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,022   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,024   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,026   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-04-13T19:41:20,028   creating build/lib/htmd/share/builder/charmmfiles
2026-04-13T19:41:20,029   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-04-13T19:41:20,032   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-04-13T19:41:20,034   creating build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,035   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,040   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,043   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,046   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,052   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,074   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,078   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,083   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,085   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,089   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:20,094   creating build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,095   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,104   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,183   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,195   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,199   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,203   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,205   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,208   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,212   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,217   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:20,224   creating build/lib/htmd/share/builder/charmmfiles/str
2026-04-13T19:41:20,225   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-04-13T19:41:20,228   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,229   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,262   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,266   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,269   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,272   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,276   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,280   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,284   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,287   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,290   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,293   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,297   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:20,303   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,304   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,329   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,334   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,340   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,344   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,363   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:20,369   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,370   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,374   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,413   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,418   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,431   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,454   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,481   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,489   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,505   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,513   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,516   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,518   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,521   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,533   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,538   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,542   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,545   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,552   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,557   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:20,562   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-13T19:41:20,563   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-13T19:41:20,566   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,567   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,570   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,572   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,574   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,577   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:20,580   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,581   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,599   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,604   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,680   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,684   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:20,688   creating build/lib/htmd/share/membranebuilder/lipids
2026-04-13T19:41:20,690   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-04-13T19:41:20,692   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-13T19:41:20,693   copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-13T19:41:20,696   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-13T19:41:20,697   copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-13T19:41:20,700   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-13T19:41:20,701   copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-13T19:41:20,704   creating build/lib/htmd/share/solvate
2026-04-13T19:41:20,705   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-04-13T19:41:20,760   installing to build/bdist.linux-armv7l/wheel
2026-04-13T19:41:20,760   running install
2026-04-13T19:41:20,784   running install_lib
2026-04-13T19:41:20,791   creating build/bdist.linux-armv7l/wheel
2026-04-13T19:41:20,794   creating build/bdist.linux-armv7l/wheel/htmd
2026-04-13T19:41:20,795   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,797   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,799   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,802   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,804   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,807   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-04-13T19:41:20,808   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,811   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,813   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,816   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,819   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,822   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,825   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,827   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-13T19:41:20,830   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-04-13T19:41:20,831   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-13T19:41:20,834   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-13T19:41:20,836   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-13T19:41:20,838   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-13T19:41:20,840   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-13T19:41:20,842   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,845   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,848   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,850   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-04-13T19:41:20,852   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-13T19:41:20,854   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-13T19:41:20,856   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-13T19:41:20,858   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-13T19:41:20,861   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-13T19:41:20,862   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:20,865   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-04-13T19:41:20,866   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-04-13T19:41:20,868   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-04-13T19:41:20,872   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,873   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,875   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,876   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,878   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,880   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,882   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,884   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,886   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,889   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,891   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,893   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,895   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,897   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,900   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,902   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,904   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,907   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,909   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,911   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,913   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,915   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,918   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,920   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,923   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,925   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,927   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,930   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,932   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,935   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,937   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,939   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,942   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,944   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,947   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,949   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,951   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,953   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,955   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,957   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,960   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,962   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,965   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,967   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,969   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,971   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,973   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,976   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,978   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,981   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,983   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,987   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,989   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,991   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,993   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,995   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,997   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:20,999   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,000   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,002   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,004   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,005   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,007   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,009   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,011   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,012   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,014   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,016   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,018   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,020   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,022   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,024   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,025   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,027   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,029   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,031   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,033   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,035   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,037   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,039   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,041   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,042   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,044   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,046   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,048   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,050   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,052   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,054   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,055   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,057   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,059   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,061   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,062   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,064   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,066   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,068   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,070   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,071   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,073   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,075   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,077   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,079   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,081   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,082   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,084   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,086   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,088   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,089   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,091   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,093   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,094   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,096   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,098   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,100   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,102   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,103   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,105   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,107   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,109   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,110   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,112   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,114   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,116   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,118   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,119   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,121   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,123   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,125   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,127   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,128   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,130   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,132   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,134   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-13T19:41:21,136   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,137   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,139   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,141   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,144   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,146   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,147   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,149   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,151   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,154   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,156   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,157   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,159   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,162   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,164   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,166   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,168   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,170   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,172   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,174   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,176   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,178   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,179   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-13T19:41:21,182   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,183   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,185   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,187   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,189   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,190   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,192   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,194   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,196   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,197   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,199   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,201   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,203   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,205   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,207   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,209   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,210   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,212   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,214   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,216   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,218   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,220   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,223   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,225   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,227   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,229   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,231   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,232   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,234   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,236   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,238   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,240   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,241   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,243   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,245   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,247   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,249   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,251   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,253   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,255   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,258   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,260   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,262   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,263   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,265   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,267   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,270   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,272   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,274   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-13T19:41:21,277   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,278   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,280   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,282   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,285   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,288   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,290   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-13T19:41:21,292   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-04-13T19:41:21,293   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-13T19:41:21,295   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-13T19:41:21,297   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-13T19:41:21,299   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-13T19:41:21,300   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-13T19:41:21,302   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-13T19:41:21,304   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-13T19:41:21,307   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-04-13T19:41:21,308   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-13T19:41:21,310   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-13T19:41:21,312   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,313   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,318   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,320   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,323   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,328   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,350   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,354   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,359   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,362   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,365   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-13T19:41:21,372   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,373   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,382   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,420   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,433   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,436   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,439   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,441   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,445   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,448   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,453   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-13T19:41:21,461   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-04-13T19:41:21,463   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,464   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,506   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,510   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,513   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,516   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,521   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,525   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,529   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,532   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,535   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,538   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,541   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-13T19:41:21,547   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,548   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,568   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,573   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,579   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,582   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,602   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-13T19:41:21,609   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-04-13T19:41:21,612   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,613   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,618   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,656   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,661   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,673   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,702   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,739   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,751   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,776   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,787   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,791   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,793   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,794   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,807   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,811   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,815   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,818   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,825   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,830   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-13T19:41:21,835   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-04-13T19:41:21,836   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-04-13T19:41:21,839   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,840   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,842   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,844   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,846   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,848   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-13T19:41:21,851   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,852   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,870   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,874   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,896   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,899   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-13T19:41:21,903   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-13T19:41:21,909   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-04-13T19:41:21,910   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-04-13T19:41:21,912   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-04-13T19:41:21,913   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-04-13T19:41:21,916   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-04-13T19:41:21,917   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-04-13T19:41:21,920   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-04-13T19:41:21,921   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-04-13T19:41:21,923   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-04-13T19:41:21,925   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-04-13T19:41:21,926   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-04-13T19:41:21,962   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-04-13T19:41:21,970   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-04-13T19:41:21,971   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-13T19:41:21,973   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-13T19:41:21,976   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-13T19:41:21,977   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,979   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,981   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,983   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,985   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,987   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,989   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,991   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,994   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:21,996   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:22,000   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-04-13T19:41:22,001   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,003   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,005   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,008   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,010   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,013   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,016   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-13T19:41:22,017   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-13T19:41:22,020   running install_egg_info
2026-04-13T19:41:22,033   running egg_info
2026-04-13T19:41:22,040   writing acellera_htmd.egg-info/PKG-INFO
2026-04-13T19:41:22,044   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-13T19:41:22,046   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-13T19:41:22,049   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-13T19:41:22,050   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-13T19:41:22,116   /tmp/pip-build-env-99ze1ijo/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-13T19:41:22,117     return get_active_overrides().subprocess_timeout
2026-04-13T19:41:22,124   listing git files failed - pretending there aren't any
2026-04-13T19:41:22,128   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:22,148   reading manifest template 'MANIFEST.in'
2026-04-13T19:41:22,166   no previously-included directories found matching 'htmd/data'
2026-04-13T19:41:22,167   no previously-included directories found matching '.github'
2026-04-13T19:41:22,168   no previously-included directories found matching 'doc'
2026-04-13T19:41:22,170   no previously-included directories found matching 'package'
2026-04-13T19:41:22,171   no previously-included directories found matching 'tests'
2026-04-13T19:41:22,172   no previously-included directories found matching 'tutorials'
2026-04-13T19:41:22,173   warning: no previously-included files found matching 'Makefile'
2026-04-13T19:41:22,174   adding license file 'LICENSE'
2026-04-13T19:41:22,195   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-13T19:41:22,197   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.1-py3.11.egg-info
2026-04-13T19:41:22,209   running install_scripts
2026-04-13T19:41:22,220   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.1.dist-info/WHEEL
2026-04-13T19:41:22,223   creating '/tmp/pip-wheel-4izgf5jr/.tmp-gblvcp3l/acellera_htmd-2.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-13T19:41:22,226   adding 'acellera_htmd-2.6.1.dist-info/licenses/LICENSE'
2026-04-13T19:41:22,229   adding 'htmd/__init__.py'
2026-04-13T19:41:22,230   adding 'htmd/config.py'
2026-04-13T19:41:22,232   adding 'htmd/decorators.py'
2026-04-13T19:41:22,233   adding 'htmd/dock.py'
2026-04-13T19:41:22,235   adding 'htmd/home.py'
2026-04-13T19:41:22,238   adding 'htmd/kinetics.py'
2026-04-13T19:41:22,239   adding 'htmd/latest.py'
2026-04-13T19:41:22,241   adding 'htmd/license.py'
2026-04-13T19:41:22,248   adding 'htmd/metricdata.py'
2026-04-13T19:41:22,250   adding 'htmd/metricdatagenerator.py'
2026-04-13T19:41:22,258   adding 'htmd/model.py'
2026-04-13T19:41:22,261   adding 'htmd/mutualinformation.py'
2026-04-13T19:41:22,262   adding 'htmd/parallelprogress.py'
2026-04-13T19:41:22,265   adding 'htmd/pathplanning.py'
2026-04-13T19:41:22,266   adding 'htmd/session.py'
2026-04-13T19:41:22,269   adding 'htmd/simlist.py'
2026-04-13T19:41:22,271   adding 'htmd/ui.py'
2026-04-13T19:41:22,272   adding 'htmd/units.py'
2026-04-13T19:41:22,274   adding 'htmd/util.py'
2026-04-13T19:41:22,275   adding 'htmd/versionwarnings.py'
2026-04-13T19:41:22,277   adding 'htmd/adaptive/__init__.py'
2026-04-13T19:41:22,279   adding 'htmd/adaptive/adaptive.py'
2026-04-13T19:41:22,283   adding 'htmd/adaptive/adaptivebandit.py'
2026-04-13T19:41:22,286   adding 'htmd/adaptive/adaptivegoal.py'
2026-04-13T19:41:22,288   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-04-13T19:41:22,291   adding 'htmd/adaptive/adaptiverun.py'
2026-04-13T19:41:22,292   adding 'htmd/adaptive/util.py'
2026-04-13T19:41:22,294   adding 'htmd/builder/__init__.py'
2026-04-13T19:41:22,302   adding 'htmd/builder/amber.py'
2026-04-13T19:41:22,305   adding 'htmd/builder/builder.py'
2026-04-13T19:41:22,310   adding 'htmd/builder/charmm.py'
2026-04-13T19:41:22,313   adding 'htmd/builder/ionize.py'
2026-04-13T19:41:22,314   adding 'htmd/builder/loopmodeler.py'
2026-04-13T19:41:22,317   adding 'htmd/builder/noncanonical.py'
2026-04-13T19:41:22,319   adding 'htmd/builder/solvate.py'
2026-04-13T19:41:22,321   adding 'htmd/clustering/__init__.py'
2026-04-13T19:41:22,322   adding 'htmd/clustering/kcenters.py'
2026-04-13T19:41:22,324   adding 'htmd/clustering/regular.py'
2026-04-13T19:41:22,326   adding 'htmd/membranebuilder/__init__.py'
2026-04-13T19:41:22,328   adding 'htmd/membranebuilder/build_membrane.py'
2026-04-13T19:41:22,329   adding 'htmd/membranebuilder/globalminimization.py'
2026-04-13T19:41:22,331   adding 'htmd/membranebuilder/ljfluid.py'
2026-04-13T19:41:22,333   adding 'htmd/membranebuilder/ringpenetration.py'
2026-04-13T19:41:22,334   adding 'htmd/projections/__init__.py'
2026-04-13T19:41:22,336   adding 'htmd/projections/gwpca.py'
2026-04-13T19:41:22,337   adding 'htmd/projections/kmeanstri.py'
2026-04-13T19:41:22,339   adding 'htmd/projections/metric.py'
2026-04-13T19:41:22,341   adding 'htmd/projections/tica.py'
2026-04-13T19:41:22,399   adding 'htmd/share/license-checker'
2026-04-13T19:41:22,431   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-04-13T19:41:22,434   adding 'htmd/share/builder/triala_capped.cif'
2026-04-13T19:41:22,435   adding 'htmd/share/builder/triala_capped.mmtf'
2026-04-13T19:41:22,438   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-04-13T19:41:22,439   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-04-13T19:41:22,441   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-04-13T19:41:22,442   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-04-13T19:41:22,444   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-04-13T19:41:22,445   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-04-13T19:41:22,446   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-04-13T19:41:22,448   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-04-13T19:41:22,449   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-04-13T19:41:22,451   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-04-13T19:41:22,452   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-04-13T19:41:22,454   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-04-13T19:41:22,455   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-04-13T19:41:22,457   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-04-13T19:41:22,459   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-04-13T19:41:22,460   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-04-13T19:41:22,462   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-04-13T19:41:22,464   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-04-13T19:41:22,465   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-04-13T19:41:22,467   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-04-13T19:41:22,468   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-04-13T19:41:22,477   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-04-13T19:41:22,481   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-04-13T19:41:22,482   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-04-13T19:41:22,484   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-04-13T19:41:22,485   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-04-13T19:41:22,486   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-04-13T19:41:22,488   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-04-13T19:41:22,489   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-04-13T19:41:22,490   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-04-13T19:41:22,491   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-04-13T19:41:22,493   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-04-13T19:41:22,494   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-04-13T19:41:22,496   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-04-13T19:41:22,497   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-04-13T19:41:22,498   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-04-13T19:41:22,499   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-04-13T19:41:22,501   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-04-13T19:41:22,502   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-04-13T19:41:22,503   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-04-13T19:41:22,504   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-04-13T19:41:22,506   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-04-13T19:41:22,507   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-04-13T19:41:22,508   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-04-13T19:41:22,509   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-04-13T19:41:22,511   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-04-13T19:41:22,512   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-04-13T19:41:22,513   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-04-13T19:41:22,514   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-04-13T19:41:22,515   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-04-13T19:41:22,516   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-04-13T19:41:22,518   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-04-13T19:41:22,519   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-04-13T19:41:22,520   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-04-13T19:41:22,522   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-04-13T19:41:22,523   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-04-13T19:41:22,524   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-04-13T19:41:22,526   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-04-13T19:41:22,527   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-04-13T19:41:22,528   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-04-13T19:41:22,530   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-04-13T19:41:22,531   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-04-13T19:41:22,532   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-04-13T19:41:22,534   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-04-13T19:41:22,535   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-04-13T19:41:22,536   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-04-13T19:41:22,537   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-04-13T19:41:22,539   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-04-13T19:41:22,540   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-04-13T19:41:22,541   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-04-13T19:41:22,542   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-04-13T19:41:22,544   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-04-13T19:41:22,545   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-04-13T19:41:22,546   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-04-13T19:41:22,547   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-04-13T19:41:22,549   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-04-13T19:41:22,550   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-04-13T19:41:22,551   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-04-13T19:41:22,552   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-04-13T19:41:22,554   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-04-13T19:41:22,555   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-04-13T19:41:22,556   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-04-13T19:41:22,557   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-04-13T19:41:22,558   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-04-13T19:41:22,559   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-04-13T19:41:22,561   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-04-13T19:41:22,562   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-04-13T19:41:22,563   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-04-13T19:41:22,564   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-04-13T19:41:22,566   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-04-13T19:41:22,567   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-04-13T19:41:22,568   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-04-13T19:41:22,569   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-04-13T19:41:22,571   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-04-13T19:41:22,572   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-04-13T19:41:22,573   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-04-13T19:41:22,575   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-04-13T19:41:22,576   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-04-13T19:41:22,577   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-04-13T19:41:22,579   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-04-13T19:41:22,580   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-04-13T19:41:22,581   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-04-13T19:41:22,582   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-04-13T19:41:22,584   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-04-13T19:41:22,585   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-04-13T19:41:22,586   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-04-13T19:41:22,587   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-04-13T19:41:22,589   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-04-13T19:41:22,590   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-04-13T19:41:22,592   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-04-13T19:41:22,593   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-04-13T19:41:22,594   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-04-13T19:41:22,595   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-04-13T19:41:22,597   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-04-13T19:41:22,598   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-04-13T19:41:22,599   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-04-13T19:41:22,601   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-04-13T19:41:22,602   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-04-13T19:41:22,603   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-04-13T19:41:22,605   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-04-13T19:41:22,606   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-04-13T19:41:22,607   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-04-13T19:41:22,608   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-04-13T19:41:22,610   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-04-13T19:41:22,611   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-04-13T19:41:22,613   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-04-13T19:41:22,614   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-04-13T19:41:22,616   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-04-13T19:41:22,617   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-04-13T19:41:22,618   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-04-13T19:41:22,619   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-04-13T19:41:22,621   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-04-13T19:41:22,622   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-04-13T19:41:22,623   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-04-13T19:41:22,624   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-04-13T19:41:22,625   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-04-13T19:41:22,626   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-04-13T19:41:22,628   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-04-13T19:41:22,629   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-04-13T19:41:22,630   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-04-13T19:41:22,632   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-04-13T19:41:22,633   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-04-13T19:41:22,634   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-04-13T19:41:22,635   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-04-13T19:41:22,637   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-04-13T19:41:22,638   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-04-13T19:41:22,640   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-04-13T19:41:22,641   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-04-13T19:41:22,642   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-04-13T19:41:22,644   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-04-13T19:41:22,645   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-04-13T19:41:22,646   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-04-13T19:41:22,647   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-04-13T19:41:22,669   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-04-13T19:41:22,672   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-04-13T19:41:22,673   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-04-13T19:41:22,678   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-04-13T19:41:22,680   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-04-13T19:41:22,682   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-04-13T19:41:22,683   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-04-13T19:41:22,685   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-04-13T19:41:22,687   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-04-13T19:41:22,688   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-04-13T19:41:22,690   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-04-13T19:41:22,691   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-04-13T19:41:22,692   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-04-13T19:41:22,693   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-04-13T19:41:22,695   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-04-13T19:41:22,696   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-04-13T19:41:22,698   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-04-13T19:41:22,699   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-04-13T19:41:22,700   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-04-13T19:41:22,702   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-04-13T19:41:22,703   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-04-13T19:41:22,705   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-04-13T19:41:22,706   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-04-13T19:41:22,707   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-04-13T19:41:22,708   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-04-13T19:41:22,709   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-04-13T19:41:22,710   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-04-13T19:41:22,711   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-04-13T19:41:22,713   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-04-13T19:41:22,714   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-04-13T19:41:22,715   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-04-13T19:41:22,716   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-04-13T19:41:22,717   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-04-13T19:41:22,718   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-04-13T19:41:22,720   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-04-13T19:41:22,721   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-04-13T19:41:22,722   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-04-13T19:41:22,724   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-04-13T19:41:22,725   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-04-13T19:41:22,726   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-04-13T19:41:22,727   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-04-13T19:41:22,728   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-04-13T19:41:22,730   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-04-13T19:41:22,731   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-04-13T19:41:22,732   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-04-13T19:41:22,733   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-04-13T19:41:22,735   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-04-13T19:41:22,736   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-04-13T19:41:22,740   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-04-13T19:41:22,741   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-04-13T19:41:22,743   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-04-13T19:41:22,744   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-04-13T19:41:22,745   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-04-13T19:41:22,747   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-04-13T19:41:22,755   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-04-13T19:41:22,757   adding 'htmd/share/builder/caps/ACE.cif'
2026-04-13T19:41:22,758   adding 'htmd/share/builder/caps/ACE.pdb'
2026-04-13T19:41:22,759   adding 'htmd/share/builder/caps/NHE.pdb'
2026-04-13T19:41:22,761   adding 'htmd/share/builder/caps/NME.cif'
2026-04-13T19:41:22,762   adding 'htmd/share/builder/caps/NME.pdb'
2026-04-13T19:41:22,764   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-04-13T19:41:22,765   adding 'htmd/share/builder/charmmfiles/README.md'
2026-04-13T19:41:22,779   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-04-13T19:41:22,794   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-04-13T19:41:22,797   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-04-13T19:41:22,812   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-04-13T19:41:22,899   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-04-13T19:41:22,909   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-04-13T19:41:22,912   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-04-13T19:41:22,920   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-04-13T19:41:22,935   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-04-13T19:41:22,938   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-04-13T19:41:22,941   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-04-13T19:41:23,018   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-04-13T19:41:23,028   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-04-13T19:41:23,158   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-04-13T19:41:23,186   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-04-13T19:41:23,198   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-04-13T19:41:23,202   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-04-13T19:41:23,240   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-04-13T19:41:23,272   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-04-13T19:41:23,379   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-04-13T19:41:23,385   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-04-13T19:41:23,398   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-04-13T19:41:23,405   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-04-13T19:41:23,498   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-04-13T19:41:23,523   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-04-13T19:41:23,543   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-04-13T19:41:23,636   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-04-13T19:41:23,647   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-04-13T19:41:23,916   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-04-13T19:41:24,033   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-04-13T19:41:24,096   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-04-13T19:41:24,112   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-04-13T19:41:24,120   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-04-13T19:41:24,137   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-04-13T19:41:24,147   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-04-13T19:41:24,155   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-04-13T19:41:24,158   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-04-13T19:41:24,159   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-04-13T19:41:24,161   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-04-13T19:41:24,162   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-04-13T19:41:24,164   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-04-13T19:41:24,177   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-04-13T19:41:24,204   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-04-13T19:41:24,224   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-04-13T19:41:24,230   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-04-13T19:41:24,360   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-04-13T19:41:24,498   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-04-13T19:41:24,507   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-04-13T19:41:24,510   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-04-13T19:41:24,522   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-04-13T19:41:24,546   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-04-13T19:41:24,549   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-04-13T19:41:24,552   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-04-13T19:41:24,555   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-04-13T19:41:24,566   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-04-13T19:41:24,766   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-04-13T19:41:24,787   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-04-13T19:41:24,791   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-04-13T19:41:24,800   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-04-13T19:41:24,809   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-04-13T19:41:24,819   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-04-13T19:41:24,825   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-04-13T19:41:24,851   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-04-13T19:41:25,159   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-04-13T19:41:25,238   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-04-13T19:41:25,288   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-04-13T19:41:25,295   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-04-13T19:41:25,304   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-04-13T19:41:25,306   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-04-13T19:41:25,308   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-04-13T19:41:25,310   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb'
2026-04-13T19:41:25,312   adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb'
2026-04-13T19:41:25,314   adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb'
2026-04-13T19:41:25,608   adding 'htmd/share/solvate/wat.pdb'
2026-04-13T19:41:25,623   adding 'acellera_htmd-2.6.1.dist-info/METADATA'
2026-04-13T19:41:25,624   adding 'acellera_htmd-2.6.1.dist-info/WHEEL'
2026-04-13T19:41:25,625   adding 'acellera_htmd-2.6.1.dist-info/entry_points.txt'
2026-04-13T19:41:25,626   adding 'acellera_htmd-2.6.1.dist-info/top_level.txt'
2026-04-13T19:41:25,631   adding 'acellera_htmd-2.6.1.dist-info/RECORD'
2026-04-13T19:41:25,678   removing build/bdist.linux-armv7l/wheel
2026-04-13T19:41:25,877   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-04-13T19:41:25,972   Created wheel for acellera-htmd: filename=acellera_htmd-2.6.1-py3-none-any.whl size=4270531 sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb
2026-04-13T19:41:25,973   Stored in directory: /tmp/pip-ephem-wheel-cache-8kyvtmt4/wheels/ab/f6/8d/ef774d833391e6a1cc56e57e4295ab0e05a15980f873754e02
2026-04-13T19:41:25,996 Successfully built acellera-htmd
2026-04-13T19:41:26,101 Removed build tracker: '/tmp/pip-build-tracker-ukom60w8'