2026-04-14T20:25:40,643 Created temporary directory: /tmp/pip-ephem-wheel-cache-c1_jfum8 2026-04-14T20:25:40,645 Created temporary directory: /tmp/pip-build-tracker-zotae3x5 2026-04-14T20:25:40,646 Initialized build tracking at /tmp/pip-build-tracker-zotae3x5 2026-04-14T20:25:40,647 Created build tracker: /tmp/pip-build-tracker-zotae3x5 2026-04-14T20:25:40,647 Entered build tracker: /tmp/pip-build-tracker-zotae3x5 2026-04-14T20:25:40,648 Created temporary directory: /tmp/pip-wheel-4p4jllub 2026-04-14T20:25:40,651 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-14T20:25:40,653 Created temporary directory: /tmp/pip-ephem-wheel-cache-comjusuh 2026-04-14T20:25:40,676 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-14T20:25:40,679 2 location(s) to search for versions of pirlygenes: 2026-04-14T20:25:40,679 * https://pypi.org/simple/pirlygenes/ 2026-04-14T20:25:40,679 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-14T20:25:40,680 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-14T20:25:40,680 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-14T20:25:40,682 Found index url https://pypi.org/simple 2026-04-14T20:25:40,935 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-14T20:25:40,959 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,960 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-14T20:25:40,960 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,961 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-14T20:25:40,962 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,963 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-14T20:25:40,964 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,965 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-14T20:25:40,966 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,967 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-14T20:25:40,968 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,969 Found link 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2026-04-14T20:25:40,978 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,979 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-14T20:25:40,980 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,981 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-14T20:25:40,985 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,985 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-14T20:25:40,986 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,987 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-14T20:25:40,988 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,989 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-14T20:25:40,990 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,991 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-14T20:25:40,991 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,992 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-14T20:25:40,993 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,994 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-14T20:25:40,995 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:40,996 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-14T20:25:41,000 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,001 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-14T20:25:41,002 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/67/b0/e677f7b6539ab55102ac0e5c18865a79005426aec1b80cb9459654846d67/pirlygenes-3.26.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.26.0 2026-04-14T20:25:41,062 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/62/64/1a173931dd65b7c939fe8958dc8d46f762e67642d8e9985dafb0768695fb/pirlygenes-3.26.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,063 Found link https://files.pythonhosted.org/packages/34/42/bbc226d9de4b5c60e8b82c457178a69c9bc5b955e7b3544a8868b81ff987/pirlygenes-3.26.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.26.1 2026-04-14T20:25:41,063 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7c/9c/c9f431181ffc9f4f47eac9845f1cb6b07954bbc0ae001b2e5207ce24b596/pirlygenes-3.26.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,064 Found link https://files.pythonhosted.org/packages/28/21/14e6e8df2a6cde7ffa7d46a6507d48f0d229f60e880a945ba21c483cb60b/pirlygenes-3.26.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 3.26.2 2026-04-14T20:25:41,065 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/c6/c0/c84347f9a9f3e386d2808c1f13784b43dd64ac84a8b4b13647a001ff9008/pirlygenes-4.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,066 Found link https://files.pythonhosted.org/packages/07/15/bda494c30efb712accc9f2e98b233f93d4dde1a6bd16a75c45005f8bd52c/pirlygenes-4.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.0.0 2026-04-14T20:25:41,067 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a0/4a/3ffe0432b7e6c795b69b088a58b848b90827babd4e86bd5d7ac4fd084791/pirlygenes-4.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,068 Found link https://files.pythonhosted.org/packages/a7/b1/be79610ab3d431a7c2524c2d808657f36937efc322c4f70167ae4eb33e1d/pirlygenes-4.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.1.0 2026-04-14T20:25:41,068 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/12/70/06f20a1754156aa5f881c2cb73428a5cdde5cb1fb53453f4636a5a0d1a87/pirlygenes-4.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,069 Found link https://files.pythonhosted.org/packages/f3/c1/797930f0d83f125a42c3ece035ceca2005374cea2cd4170fe644d730e521/pirlygenes-4.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.2.0 2026-04-14T20:25:41,070 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-14T20:25:41,071 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-14T20:25:41,072 Found index url https://www.piwheels.org/simple 2026-04-14T20:25:41,252 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-14T20:25:41,269 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.1.0-py3-none-any.whl#sha256=76779f2537039054e63e2b8f18abadbb914465cfda5ab8b46f368fa6808243e3 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,270 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.0.0-py3-none-any.whl#sha256=bd5eff37ffb71ddda7768ff59e5e9eff913afc92525bfa4b4518c143a18c8878 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,271 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.26.2-py3-none-any.whl#sha256=d66b658e411e47ea09be90c21189c5a7a0a861c2c2053c5976d08de9c4a0a124 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,271 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.26.1-py3-none-any.whl#sha256=dc5ec4b5e1c5987c45d2995162d43b5cdc25ba6eb88905cac109c756fc71aa42 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,272 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-3.26.0-py3-none-any.whl#sha256=51bb9e5c6d4ca97ef4232fb9baa09ed3d31281f17a8567821368245a20bac308 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,272 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,292 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.10.0-py3-none-any.whl#sha256=393a743c2c0abdcbb8f787acfe60892c2335aa4a6be80038396dc5b27473274c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,293 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.9.0-py3-none-any.whl#sha256=ca97e53c115bc9d06958ccce0494c60d942faba3dd044564ca15284523b8ec19 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,294 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.1-py3-none-any.whl#sha256=1b346af13b190e47650615724130b80dc1044b25269d3603013a7436e13f4ab6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,294 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,294 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,295 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,295 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,296 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,297 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,297 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.0-py3-none-any.whl#sha256=7ed846a4e0950617d0103bb8a51b54f0f00bfa982caa83c9013067f52251e39e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,298 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.2-py3-none-any.whl#sha256=25793e34918b22dc36562123fdf4e753df72f9cc712aa69c1f151b96a09ab68a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,298 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,299 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,299 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,300 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,301 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,301 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,301 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,302 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,302 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,303 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,304 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,304 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,305 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,305 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-14T20:25:41,306 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-14T20:25:41,307 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-14T20:25:41,335 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-14T20:25:41,355 Collecting pirlygenes==4.2.0 2026-04-14T20:25:41,357 Created temporary directory: /tmp/pip-unpack-qpxm94mx 2026-04-14T20:25:41,600 Downloading pirlygenes-4.2.0.tar.gz (7.4 MB) 2026-04-14T20:25:43,818 Added pirlygenes==4.2.0 from https://files.pythonhosted.org/packages/f3/c1/797930f0d83f125a42c3ece035ceca2005374cea2cd4170fe644d730e521/pirlygenes-4.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-zotae3x5' 2026-04-14T20:25:43,827 Created temporary directory: /tmp/pip-build-env-kpxpvmr2 2026-04-14T20:25:43,832 Installing build dependencies: started 2026-04-14T20:25:43,833 Running command pip subprocess to install build dependencies 2026-04-14T20:25:44,966 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-14T20:25:45,390 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-14T20:25:45,413 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-14T20:25:47,205 Collecting setuptools>=60 2026-04-14T20:25:47,308 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-14T20:25:47,695 Collecting setuptools-scm>=8.0 2026-04-14T20:25:47,713 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-14T20:25:47,796 Collecting vcs-versioning>=1.0.0.dev0 2026-04-14T20:25:47,813 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-14T20:25:47,998 Collecting packaging>=20 2026-04-14T20:25:48,018 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-14T20:25:51,048 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-14T20:25:54,733 Creating /tmp/pip-build-env-kpxpvmr2/overlay/local/bin 2026-04-14T20:25:54,735 changing mode of /tmp/pip-build-env-kpxpvmr2/overlay/local/bin/vcs-versioning to 755 2026-04-14T20:25:54,848 changing mode of /tmp/pip-build-env-kpxpvmr2/overlay/local/bin/setuptools-scm to 755 2026-04-14T20:25:54,876 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-14T20:25:55,161 Installing build dependencies: finished with status 'done' 2026-04-14T20:25:55,176 Getting requirements to build wheel: started 2026-04-14T20:25:55,177 Running command Getting requirements to build wheel 2026-04-14T20:25:55,857 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-14T20:25:55,966 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:55,967 !! 2026-04-14T20:25:55,968 ******************************************************************************** 2026-04-14T20:25:55,969 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:55,970 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:55,971 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:55,972 ******************************************************************************** 2026-04-14T20:25:55,973 !! 2026-04-14T20:25:55,974 dist._finalize_license_expression() 2026-04-14T20:25:55,975 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:55,975 !! 2026-04-14T20:25:55,976 ******************************************************************************** 2026-04-14T20:25:55,977 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:55,978 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:55,980 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:55,981 ******************************************************************************** 2026-04-14T20:25:55,982 !! 2026-04-14T20:25:55,982 self._finalize_license_expression() 2026-04-14T20:25:55,983 running egg_info 2026-04-14T20:25:55,989 writing pirlygenes.egg-info/PKG-INFO 2026-04-14T20:25:55,994 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-14T20:25:55,996 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-14T20:25:55,998 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-14T20:25:55,999 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-14T20:25:56,043 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-14T20:25:56,043 return get_active_overrides().subprocess_timeout 2026-04-14T20:25:56,052 listing git files failed - pretending there aren't any 2026-04-14T20:25:56,062 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:56,072 adding license file 'LICENSE' 2026-04-14T20:25:56,078 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:56,183 Getting requirements to build wheel: finished with status 'done' 2026-04-14T20:25:56,187 Created temporary directory: /tmp/pip-modern-metadata-bnhobm0m 2026-04-14T20:25:56,189 Preparing metadata (pyproject.toml): started 2026-04-14T20:25:56,190 Running command Preparing metadata (pyproject.toml) 2026-04-14T20:25:56,823 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-14T20:25:56,930 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:56,930 !! 2026-04-14T20:25:56,931 ******************************************************************************** 2026-04-14T20:25:56,932 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:56,933 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:56,934 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:56,934 ******************************************************************************** 2026-04-14T20:25:56,935 !! 2026-04-14T20:25:56,936 dist._finalize_license_expression() 2026-04-14T20:25:56,937 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:56,937 !! 2026-04-14T20:25:56,938 ******************************************************************************** 2026-04-14T20:25:56,939 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:56,940 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:56,941 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:56,941 ******************************************************************************** 2026-04-14T20:25:56,943 !! 2026-04-14T20:25:56,943 self._finalize_license_expression() 2026-04-14T20:25:56,944 running dist_info 2026-04-14T20:25:56,959 creating /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info 2026-04-14T20:25:56,959 writing /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/PKG-INFO 2026-04-14T20:25:56,964 writing dependency_links to /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/dependency_links.txt 2026-04-14T20:25:56,966 writing entry points to /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/entry_points.txt 2026-04-14T20:25:56,968 writing requirements to /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/requires.txt 2026-04-14T20:25:56,969 writing top-level names to /tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/top_level.txt 2026-04-14T20:25:56,970 writing manifest file '/tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:57,007 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-14T20:25:57,008 return get_active_overrides().subprocess_timeout 2026-04-14T20:25:57,014 listing git files failed - pretending there aren't any 2026-04-14T20:25:57,021 reading manifest file '/tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:57,023 adding license file 'LICENSE' 2026-04-14T20:25:57,028 writing manifest file '/tmp/pip-modern-metadata-bnhobm0m/pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:57,029 creating '/tmp/pip-modern-metadata-bnhobm0m/pirlygenes-4.2.0.dist-info' 2026-04-14T20:25:57,162 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-14T20:25:57,168 Source in /tmp/pip-wheel-4p4jllub/pirlygenes_39bc852416554d8ca63b35669840284a has version 4.2.0, which satisfies requirement pirlygenes==4.2.0 from https://files.pythonhosted.org/packages/f3/c1/797930f0d83f125a42c3ece035ceca2005374cea2cd4170fe644d730e521/pirlygenes-4.2.0.tar.gz 2026-04-14T20:25:57,169 Removed pirlygenes==4.2.0 from https://files.pythonhosted.org/packages/f3/c1/797930f0d83f125a42c3ece035ceca2005374cea2cd4170fe644d730e521/pirlygenes-4.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-zotae3x5' 2026-04-14T20:25:57,177 Created temporary directory: /tmp/pip-unpack-ij755q_w 2026-04-14T20:25:57,178 Building wheels for collected packages: pirlygenes 2026-04-14T20:25:57,182 Created temporary directory: /tmp/pip-wheel-owf406i8 2026-04-14T20:25:57,183 Destination directory: /tmp/pip-wheel-owf406i8 2026-04-14T20:25:57,185 Building wheel for pirlygenes (pyproject.toml): started 2026-04-14T20:25:57,186 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-14T20:25:57,803 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-14T20:25:57,903 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:57,904 !! 2026-04-14T20:25:57,905 ******************************************************************************** 2026-04-14T20:25:57,906 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:57,907 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:57,908 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:57,909 ******************************************************************************** 2026-04-14T20:25:57,910 !! 2026-04-14T20:25:57,911 dist._finalize_license_expression() 2026-04-14T20:25:57,911 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-14T20:25:57,912 !! 2026-04-14T20:25:57,913 ******************************************************************************** 2026-04-14T20:25:57,914 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-14T20:25:57,915 License :: OSI Approved :: Apache Software License 2026-04-14T20:25:57,916 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-14T20:25:57,917 ******************************************************************************** 2026-04-14T20:25:57,918 !! 2026-04-14T20:25:57,918 self._finalize_license_expression() 2026-04-14T20:25:57,919 running bdist_wheel 2026-04-14T20:25:57,938 running build 2026-04-14T20:25:57,939 running build_py 2026-04-14T20:25:57,941 creating build/lib/pirlygenes 2026-04-14T20:25:57,943 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-14T20:25:57,946 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-14T20:25:57,949 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-14T20:25:57,952 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-14T20:25:57,955 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-14T20:25:57,957 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-14T20:25:57,959 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-14T20:25:57,961 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-14T20:25:57,963 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-14T20:25:57,965 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-14T20:25:57,967 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-14T20:25:57,972 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-14T20:25:57,974 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-14T20:25:57,977 copying pirlygenes/sample_context.py -> build/lib/pirlygenes 2026-04-14T20:25:57,980 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-14T20:25:57,984 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-14T20:25:57,986 running egg_info 2026-04-14T20:25:58,001 writing pirlygenes.egg-info/PKG-INFO 2026-04-14T20:25:58,006 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-14T20:25:58,007 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-14T20:25:58,009 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-14T20:25:58,010 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-14T20:25:58,041 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-14T20:25:58,042 return get_active_overrides().subprocess_timeout 2026-04-14T20:25:58,049 listing git files failed - pretending there aren't any 2026-04-14T20:25:58,056 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:58,063 adding license file 'LICENSE' 2026-04-14T20:25:58,069 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-14T20:25:58,072 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-14T20:25:58,073 !! 2026-04-14T20:25:58,074 ******************************************************************************** 2026-04-14T20:25:58,075 ############################ 2026-04-14T20:25:58,075 # Package would be ignored # 2026-04-14T20:25:58,076 ############################ 2026-04-14T20:25:58,076 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-14T20:25:58,077 but it is absent from setuptools' `packages` configuration. 2026-04-14T20:25:58,078 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-14T20:25:58,079 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-14T20:25:58,079 to the `packages` configuration field. 2026-04-14T20:25:58,081 Alternatively, you can also rely on setuptools' discovery methods 2026-04-14T20:25:58,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-14T20:25:58,081 instead of `find_packages(...)`/`find:`). 2026-04-14T20:25:58,082 You can read more about "package discovery" on setuptools documentation page: 2026-04-14T20:25:58,083 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-14T20:25:58,084 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-14T20:25:58,084 already explicitly excluding 'pirlygenes.data' via 2026-04-14T20:25:58,085 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-14T20:25:58,085 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-14T20:25:58,086 combination with a more fine grained `package-data` configuration. 2026-04-14T20:25:58,087 You can read more about "package data files" on setuptools documentation page: 2026-04-14T20:25:58,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-14T20:25:58,090 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-14T20:25:58,090 even if it does not contain any `.py` files. 2026-04-14T20:25:58,091 On the other hand, currently there is no concept of package data 2026-04-14T20:25:58,091 directory, all directories are treated like packages. 2026-04-14T20:25:58,092 ******************************************************************************** 2026-04-14T20:25:58,093 !! 2026-04-14T20:25:58,093 check.warn(importable) 2026-04-14T20:25:58,094 /tmp/pip-build-env-kpxpvmr2/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-14T20:25:58,094 !! 2026-04-14T20:25:58,095 ******************************************************************************** 2026-04-14T20:25:58,096 ############################ 2026-04-14T20:25:58,096 # Package would be ignored # 2026-04-14T20:25:58,097 ############################ 2026-04-14T20:25:58,097 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-14T20:25:58,098 but it is absent from setuptools' `packages` configuration. 2026-04-14T20:25:58,099 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-14T20:25:58,099 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-14T20:25:58,100 to the `packages` configuration field. 2026-04-14T20:25:58,101 Alternatively, you can also rely on setuptools' discovery methods 2026-04-14T20:25:58,102 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-14T20:25:58,103 instead of `find_packages(...)`/`find:`). 2026-04-14T20:25:58,104 You can read more about "package discovery" on setuptools documentation page: 2026-04-14T20:25:58,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-14T20:25:58,106 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-14T20:25:58,107 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-14T20:25:58,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-14T20:25:58,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-14T20:25:58,109 combination with a more fine grained `package-data` configuration. 2026-04-14T20:25:58,110 You can read more about "package data files" on setuptools documentation page: 2026-04-14T20:25:58,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-14T20:25:58,114 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-14T20:25:58,115 even if it does not contain any `.py` files. 2026-04-14T20:25:58,115 On the other hand, currently there is no concept of package data 2026-04-14T20:25:58,116 directory, all directories are treated like packages. 2026-04-14T20:25:58,116 ******************************************************************************** 2026-04-14T20:25:58,117 !! 2026-04-14T20:25:58,118 check.warn(importable) 2026-04-14T20:25:58,119 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-14T20:25:58,119 creating build/lib/pirlygenes/data 2026-04-14T20:25:58,120 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,121 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,122 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,123 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,124 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,124 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,125 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,125 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,126 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,126 copying pirlygenes/data/cancer-family-panels.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,127 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,127 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,128 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,129 copying pirlygenes/data/culture-stress-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,131 copying pirlygenes/data/degradation-gene-pairs.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,133 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,136 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,139 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,142 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,144 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,270 copying pirlygenes/data/lineage-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,273 copying pirlygenes/data/mitochondrial-genes.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,275 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,278 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,440 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,442 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,450 copying pirlygenes/data/tme-markers.csv -> build/lib/pirlygenes/data 2026-04-14T20:25:58,453 creating build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,454 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,456 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,459 copying pirlygenes/decomposition/panels.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,462 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,465 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,468 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-14T20:25:58,485 installing to build/bdist.linux-armv7l/wheel 2026-04-14T20:25:58,486 running install 2026-04-14T20:25:58,509 running install_lib 2026-04-14T20:25:58,517 creating build/bdist.linux-armv7l/wheel 2026-04-14T20:25:58,519 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-14T20:25:58,520 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,523 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,526 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,529 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,532 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,534 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,537 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,539 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,540 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,543 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,544 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,547 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,554 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-14T20:25:58,555 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,724 copying build/lib/pirlygenes/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,726 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,729 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,737 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,740 copying build/lib/pirlygenes/data/tme-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,742 copying build/lib/pirlygenes/data/degradation-gene-pairs.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,744 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,748 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,750 copying build/lib/pirlygenes/data/cancer-family-panels.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,752 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,755 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,758 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,760 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,906 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,909 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,912 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,914 copying build/lib/pirlygenes/data/culture-stress-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,917 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,920 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,923 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,926 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,928 copying build/lib/pirlygenes/data/lineage-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,930 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,932 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,934 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,936 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-14T20:25:58,938 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,940 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,943 copying build/lib/pirlygenes/sample_context.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,946 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-14T20:25:58,947 copying build/lib/pirlygenes/decomposition/panels.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,950 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,952 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,954 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,957 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,959 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-14T20:25:58,961 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,965 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-14T20:25:58,968 running install_egg_info 2026-04-14T20:25:58,975 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-4.2.0-py3.11.egg-info 2026-04-14T20:25:58,987 running install_scripts 2026-04-14T20:25:58,999 creating build/bdist.linux-armv7l/wheel/pirlygenes-4.2.0.dist-info/WHEEL 2026-04-14T20:25:59,001 creating '/tmp/pip-wheel-owf406i8/.tmp-9nfgi5zs/pirlygenes-4.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-14T20:25:59,004 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-14T20:25:59,006 adding 'pirlygenes/__init__.py' 2026-04-14T20:25:59,007 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-14T20:25:59,019 adding 'pirlygenes/cli.py' 2026-04-14T20:25:59,021 adding 'pirlygenes/common.py' 2026-04-14T20:25:59,022 adding 'pirlygenes/gene_ids.py' 2026-04-14T20:25:59,024 adding 'pirlygenes/gene_names.py' 2026-04-14T20:25:59,029 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-14T20:25:59,031 adding 'pirlygenes/load_dataset.py' 2026-04-14T20:25:59,034 adding 'pirlygenes/load_expression.py' 2026-04-14T20:25:59,055 adding 'pirlygenes/plot.py' 2026-04-14T20:25:59,058 adding 'pirlygenes/plot_data_helpers.py' 2026-04-14T20:25:59,062 adding 'pirlygenes/sample_context.py' 2026-04-14T20:25:59,065 adding 'pirlygenes/sample_quality.py' 2026-04-14T20:25:59,066 adding 'pirlygenes/transcript_to_gene.py' 2026-04-14T20:25:59,076 adding 'pirlygenes/tumor_purity.py' 2026-04-14T20:25:59,078 adding 'pirlygenes/version.py' 2026-04-14T20:25:59,080 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-14T20:25:59,084 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-14T20:25:59,085 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-14T20:25:59,087 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-14T20:25:59,088 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-14T20:25:59,091 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-14T20:25:59,093 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-14T20:25:59,098 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-14T20:25:59,101 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-14T20:25:59,102 adding 'pirlygenes/data/cancer-family-panels.csv' 2026-04-14T20:25:59,104 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-14T20:25:59,110 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-14T20:25:59,113 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-14T20:25:59,114 adding 'pirlygenes/data/culture-stress-genes.csv' 2026-04-14T20:25:59,115 adding 'pirlygenes/data/degradation-gene-pairs.csv' 2026-04-14T20:25:59,117 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-14T20:25:59,119 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-14T20:25:59,121 adding 'pirlygenes/data/gene-sets.csv' 2026-04-14T20:25:59,122 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-14T20:26:01,750 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-14T20:26:01,799 adding 'pirlygenes/data/lineage-genes.csv' 2026-04-14T20:26:01,800 adding 'pirlygenes/data/mitochondrial-genes.csv' 2026-04-14T20:26:01,802 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-14T20:26:04,912 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-14T20:26:04,984 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-14T20:26:05,006 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-14T20:26:05,009 adding 'pirlygenes/data/tme-markers.csv' 2026-04-14T20:26:05,011 adding 'pirlygenes/decomposition/__init__.py' 2026-04-14T20:26:05,016 adding 'pirlygenes/decomposition/engine.py' 2026-04-14T20:26:05,019 adding 'pirlygenes/decomposition/panels.py' 2026-04-14T20:26:05,021 adding 'pirlygenes/decomposition/plot.py' 2026-04-14T20:26:05,023 adding 'pirlygenes/decomposition/signature.py' 2026-04-14T20:26:05,025 adding 'pirlygenes/decomposition/templates.py' 2026-04-14T20:26:05,029 adding 'pirlygenes-4.2.0.dist-info/licenses/LICENSE' 2026-04-14T20:26:05,034 adding 'pirlygenes-4.2.0.dist-info/METADATA' 2026-04-14T20:26:05,035 adding 'pirlygenes-4.2.0.dist-info/WHEEL' 2026-04-14T20:26:05,036 adding 'pirlygenes-4.2.0.dist-info/entry_points.txt' 2026-04-14T20:26:05,037 adding 'pirlygenes-4.2.0.dist-info/top_level.txt' 2026-04-14T20:26:05,039 adding 'pirlygenes-4.2.0.dist-info/RECORD' 2026-04-14T20:26:05,112 removing build/bdist.linux-armv7l/wheel 2026-04-14T20:26:05,241 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-14T20:26:05,385 Created wheel for pirlygenes: filename=pirlygenes-4.2.0-py3-none-any.whl size=6685153 sha256=effe4fd426cb4e1a9418375bc7dff318434fd95ec64869c68704b912ca3071fa 2026-04-14T20:26:05,386 Stored in directory: /tmp/pip-ephem-wheel-cache-comjusuh/wheels/9f/7b/4e/11535753e616aa686b24ee6febb3a6c60a395c7dac997f5618 2026-04-14T20:26:05,406 Successfully built pirlygenes 2026-04-14T20:26:05,566 Removed build tracker: '/tmp/pip-build-tracker-zotae3x5'