2026-04-16T01:38:17,850 Created temporary directory: /tmp/pip-ephem-wheel-cache-x1_i1h6i 2026-04-16T01:38:17,852 Created temporary directory: /tmp/pip-build-tracker-z567lu7j 2026-04-16T01:38:17,852 Initialized build tracking at /tmp/pip-build-tracker-z567lu7j 2026-04-16T01:38:17,853 Created build tracker: /tmp/pip-build-tracker-z567lu7j 2026-04-16T01:38:17,853 Entered build tracker: /tmp/pip-build-tracker-z567lu7j 2026-04-16T01:38:17,854 Created temporary directory: /tmp/pip-wheel-fu7rfu2m 2026-04-16T01:38:17,857 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-16T01:38:17,859 Created temporary directory: /tmp/pip-ephem-wheel-cache-eoi9zuia 2026-04-16T01:38:17,881 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-16T01:38:17,884 2 location(s) to search for versions of varcode: 2026-04-16T01:38:17,884 * https://pypi.org/simple/varcode/ 2026-04-16T01:38:17,884 * https://www.piwheels.org/simple/varcode/ 2026-04-16T01:38:17,885 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-04-16T01:38:17,886 Getting page https://pypi.org/simple/varcode/ 2026-04-16T01:38:17,887 Found index url https://pypi.org/simple 2026-04-16T01:38:18,114 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-04-16T01:38:18,132 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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'/tmp/pip-build-tracker-z567lu7j' 2026-04-16T01:38:19,039 Created temporary directory: /tmp/pip-build-env-ib2gu0um 2026-04-16T01:38:19,044 Installing build dependencies: started 2026-04-16T01:38:19,045 Running command pip subprocess to install build dependencies 2026-04-16T01:38:19,076 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-16T01:38:19,115 Traceback (most recent call last): 2026-04-16T01:38:19,115 File "", line 192, in addpackage 2026-04-16T01:38:19,116 File "", line 1, in 2026-04-16T01:38:19,117 ModuleNotFoundError: No module named 'outofcuda' 2026-04-16T01:38:19,118 Remainder of file ignored 2026-04-16T01:38:20,170 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-16T01:38:20,577 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-16T01:38:20,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-16T01:38:22,366 Collecting setuptools>=64 2026-04-16T01:38:22,445 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-16T01:38:25,385 Installing collected packages: setuptools 2026-04-16T01:38:28,385 Successfully installed setuptools-82.0.1 2026-04-16T01:38:28,651 Installing build dependencies: finished with status 'done' 2026-04-16T01:38:28,658 Getting requirements to build wheel: started 2026-04-16T01:38:28,659 Running command Getting requirements to build wheel 2026-04-16T01:38:29,343 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:29,343 !! 2026-04-16T01:38:29,344 ******************************************************************************** 2026-04-16T01:38:29,344 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:29,345 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:29,346 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:29,347 ******************************************************************************** 2026-04-16T01:38:29,348 !! 2026-04-16T01:38:29,349 dist._finalize_license_expression() 2026-04-16T01:38:29,349 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:29,350 !! 2026-04-16T01:38:29,351 ******************************************************************************** 2026-04-16T01:38:29,352 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:29,353 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:29,354 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:29,355 ******************************************************************************** 2026-04-16T01:38:29,356 !! 2026-04-16T01:38:29,356 self._finalize_license_expression() 2026-04-16T01:38:29,357 running egg_info 2026-04-16T01:38:29,361 writing varcode.egg-info/PKG-INFO 2026-04-16T01:38:29,365 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-16T01:38:29,367 writing entry points to varcode.egg-info/entry_points.txt 2026-04-16T01:38:29,369 writing requirements to varcode.egg-info/requires.txt 2026-04-16T01:38:29,370 writing top-level names to varcode.egg-info/top_level.txt 2026-04-16T01:38:29,395 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:29,402 reading manifest template 'MANIFEST.in' 2026-04-16T01:38:29,403 adding license file 'LICENSE' 2026-04-16T01:38:29,409 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:29,506 Getting requirements to build wheel: finished with status 'done' 2026-04-16T01:38:29,509 Created temporary directory: /tmp/pip-modern-metadata-jd__dz1f 2026-04-16T01:38:29,511 Preparing metadata (pyproject.toml): started 2026-04-16T01:38:29,512 Running command Preparing metadata (pyproject.toml) 2026-04-16T01:38:30,153 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:30,153 !! 2026-04-16T01:38:30,155 ******************************************************************************** 2026-04-16T01:38:30,155 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:30,156 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:30,157 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:30,157 ******************************************************************************** 2026-04-16T01:38:30,158 !! 2026-04-16T01:38:30,158 dist._finalize_license_expression() 2026-04-16T01:38:30,159 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:30,160 !! 2026-04-16T01:38:30,161 ******************************************************************************** 2026-04-16T01:38:30,161 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:30,162 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:30,163 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:30,164 ******************************************************************************** 2026-04-16T01:38:30,164 !! 2026-04-16T01:38:30,165 self._finalize_license_expression() 2026-04-16T01:38:30,167 running dist_info 2026-04-16T01:38:30,178 creating /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info 2026-04-16T01:38:30,178 writing /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/PKG-INFO 2026-04-16T01:38:30,182 writing dependency_links to /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/dependency_links.txt 2026-04-16T01:38:30,184 writing entry points to /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/entry_points.txt 2026-04-16T01:38:30,185 writing requirements to /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/requires.txt 2026-04-16T01:38:30,186 writing top-level names to /tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/top_level.txt 2026-04-16T01:38:30,188 writing manifest file '/tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:30,212 reading manifest file '/tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:30,214 reading manifest template 'MANIFEST.in' 2026-04-16T01:38:30,215 adding license file 'LICENSE' 2026-04-16T01:38:30,220 writing manifest file '/tmp/pip-modern-metadata-jd__dz1f/varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:30,221 creating '/tmp/pip-modern-metadata-jd__dz1f/varcode-2.8.0.dist-info' 2026-04-16T01:38:30,345 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-16T01:38:30,350 Source in /tmp/pip-wheel-fu7rfu2m/varcode_6e748108518449b8869f2bc5df28b3ad has version 2.8.0, which satisfies requirement varcode==2.8.0 from https://files.pythonhosted.org/packages/a8/d6/05898d752bf0ec6353c112394dcaa21d42fe132c74ac10204e0077f5f211/varcode-2.8.0.tar.gz 2026-04-16T01:38:30,351 Removed varcode==2.8.0 from https://files.pythonhosted.org/packages/a8/d6/05898d752bf0ec6353c112394dcaa21d42fe132c74ac10204e0077f5f211/varcode-2.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-z567lu7j' 2026-04-16T01:38:30,357 Created temporary directory: /tmp/pip-unpack-ba965sfb 2026-04-16T01:38:30,358 Building wheels for collected packages: varcode 2026-04-16T01:38:30,362 Created temporary directory: /tmp/pip-wheel-tads2d2j 2026-04-16T01:38:30,363 Destination directory: /tmp/pip-wheel-tads2d2j 2026-04-16T01:38:30,365 Building wheel for varcode (pyproject.toml): started 2026-04-16T01:38:30,366 Running command Building wheel for varcode (pyproject.toml) 2026-04-16T01:38:30,985 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:30,985 !! 2026-04-16T01:38:30,986 ******************************************************************************** 2026-04-16T01:38:30,987 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:30,988 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:30,988 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:30,989 ******************************************************************************** 2026-04-16T01:38:30,990 !! 2026-04-16T01:38:30,990 dist._finalize_license_expression() 2026-04-16T01:38:30,991 /tmp/pip-build-env-ib2gu0um/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T01:38:30,992 !! 2026-04-16T01:38:30,993 ******************************************************************************** 2026-04-16T01:38:30,993 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T01:38:30,994 License :: OSI Approved :: Apache Software License 2026-04-16T01:38:30,995 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T01:38:30,995 ******************************************************************************** 2026-04-16T01:38:30,996 !! 2026-04-16T01:38:30,996 self._finalize_license_expression() 2026-04-16T01:38:30,997 running bdist_wheel 2026-04-16T01:38:31,011 running build 2026-04-16T01:38:31,011 running build_py 2026-04-16T01:38:31,018 creating build/lib/varcode 2026-04-16T01:38:31,020 copying varcode/maf.py -> build/lib/varcode 2026-04-16T01:38:31,023 copying varcode/mutant_transcript.py -> build/lib/varcode 2026-04-16T01:38:31,025 copying varcode/__init__.py -> build/lib/varcode 2026-04-16T01:38:31,027 copying varcode/version.py -> build/lib/varcode 2026-04-16T01:38:31,028 copying varcode/csv_helpers.py -> build/lib/varcode 2026-04-16T01:38:31,031 copying varcode/util.py -> build/lib/varcode 2026-04-16T01:38:31,032 copying varcode/variant.py -> build/lib/varcode 2026-04-16T01:38:31,035 copying varcode/splice_outcomes.py -> build/lib/varcode 2026-04-16T01:38:31,038 copying varcode/errors.py -> build/lib/varcode 2026-04-16T01:38:31,040 copying varcode/vcf_output.py -> build/lib/varcode 2026-04-16T01:38:31,042 copying varcode/string_helpers.py -> build/lib/varcode 2026-04-16T01:38:31,044 copying varcode/reference.py -> build/lib/varcode 2026-04-16T01:38:31,047 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-04-16T01:38:31,049 copying varcode/genotype.py -> build/lib/varcode 2026-04-16T01:38:31,051 copying varcode/variant_collection.py -> build/lib/varcode 2026-04-16T01:38:31,053 copying varcode/common.py -> build/lib/varcode 2026-04-16T01:38:31,055 copying varcode/vcf.py -> build/lib/varcode 2026-04-16T01:38:31,058 copying varcode/nucleotides.py -> build/lib/varcode 2026-04-16T01:38:31,061 creating build/lib/varcode/annotators 2026-04-16T01:38:31,062 copying varcode/annotators/__init__.py -> build/lib/varcode/annotators 2026-04-16T01:38:31,064 copying varcode/annotators/sequence_diff.py -> build/lib/varcode/annotators 2026-04-16T01:38:31,066 copying varcode/annotators/registry.py -> build/lib/varcode/annotators 2026-04-16T01:38:31,069 copying varcode/annotators/legacy.py -> build/lib/varcode/annotators 2026-04-16T01:38:31,071 creating build/lib/varcode/cli 2026-04-16T01:38:31,072 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-04-16T01:38:31,074 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-04-16T01:38:31,076 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-04-16T01:38:31,078 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-04-16T01:38:31,080 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-04-16T01:38:31,083 creating build/lib/varcode/effects 2026-04-16T01:38:31,084 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-04-16T01:38:31,086 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-04-16T01:38:31,089 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-04-16T01:38:31,091 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-04-16T01:38:31,093 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-04-16T01:38:31,095 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-04-16T01:38:31,098 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-04-16T01:38:31,099 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-04-16T01:38:31,102 copying varcode/effects/codon_tables.py -> build/lib/varcode/effects 2026-04-16T01:38:31,104 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-04-16T01:38:31,106 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-04-16T01:38:31,109 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-04-16T01:38:31,111 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-04-16T01:38:31,114 copying varcode/effects/fast_path.py -> build/lib/varcode/effects 2026-04-16T01:38:31,116 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-04-16T01:38:31,118 running egg_info 2026-04-16T01:38:31,127 writing varcode.egg-info/PKG-INFO 2026-04-16T01:38:31,130 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-16T01:38:31,132 writing entry points to varcode.egg-info/entry_points.txt 2026-04-16T01:38:31,133 writing requirements to varcode.egg-info/requires.txt 2026-04-16T01:38:31,134 writing top-level names to varcode.egg-info/top_level.txt 2026-04-16T01:38:31,148 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:31,155 reading manifest template 'MANIFEST.in' 2026-04-16T01:38:31,156 adding license file 'LICENSE' 2026-04-16T01:38:31,162 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-16T01:38:31,167 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-04-16T01:38:31,180 installing to build/bdist.linux-armv7l/wheel 2026-04-16T01:38:31,181 running install 2026-04-16T01:38:31,204 running install_lib 2026-04-16T01:38:31,210 creating build/bdist.linux-armv7l/wheel 2026-04-16T01:38:31,212 creating build/bdist.linux-armv7l/wheel/varcode 2026-04-16T01:38:31,213 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,216 copying build/lib/varcode/mutant_transcript.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,218 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,220 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,222 copying build/lib/varcode/csv_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,224 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,226 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,228 copying build/lib/varcode/splice_outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,231 copying build/lib/varcode/errors.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,233 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,237 creating build/bdist.linux-armv7l/wheel/varcode/annotators 2026-04-16T01:38:31,238 copying build/lib/varcode/annotators/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-16T01:38:31,240 copying build/lib/varcode/annotators/sequence_diff.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-16T01:38:31,242 copying build/lib/varcode/annotators/registry.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-16T01:38:31,245 copying build/lib/varcode/annotators/legacy.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-16T01:38:31,247 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,249 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,251 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,254 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-04-16T01:38:31,255 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,256 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,258 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,260 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,262 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,264 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-16T01:38:31,266 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-04-16T01:38:31,268 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,270 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,272 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,275 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,277 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,279 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,281 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,283 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,286 copying build/lib/varcode/effects/codon_tables.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,288 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,290 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,292 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,295 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,297 copying build/lib/varcode/effects/fast_path.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,300 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-16T01:38:31,302 copying build/lib/varcode/genotype.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,304 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,307 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,309 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,312 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-16T01:38:31,314 running install_egg_info 2026-04-16T01:38:31,319 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-2.8.0-py3.11.egg-info 2026-04-16T01:38:31,332 running install_scripts 2026-04-16T01:38:31,343 creating build/bdist.linux-armv7l/wheel/varcode-2.8.0.dist-info/WHEEL 2026-04-16T01:38:31,346 creating '/tmp/pip-wheel-tads2d2j/.tmp-17r87mv3/varcode-2.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-16T01:38:31,348 adding 'varcode/__init__.py' 2026-04-16T01:38:31,350 adding 'varcode/common.py' 2026-04-16T01:38:31,351 adding 'varcode/csv_helpers.py' 2026-04-16T01:38:31,353 adding 'varcode/errors.py' 2026-04-16T01:38:31,355 adding 'varcode/genotype.py' 2026-04-16T01:38:31,357 adding 'varcode/maf.py' 2026-04-16T01:38:31,360 adding 'varcode/mutant_transcript.py' 2026-04-16T01:38:31,362 adding 'varcode/nucleotides.py' 2026-04-16T01:38:31,364 adding 'varcode/reference.py' 2026-04-16T01:38:31,369 adding 'varcode/splice_outcomes.py' 2026-04-16T01:38:31,370 adding 'varcode/string_helpers.py' 2026-04-16T01:38:31,372 adding 'varcode/ucsc_reference_names.py' 2026-04-16T01:38:31,373 adding 'varcode/util.py' 2026-04-16T01:38:31,376 adding 'varcode/variant.py' 2026-04-16T01:38:31,379 adding 'varcode/variant_collection.py' 2026-04-16T01:38:31,382 adding 'varcode/vcf.py' 2026-04-16T01:38:31,384 adding 'varcode/vcf_output.py' 2026-04-16T01:38:31,385 adding 'varcode/version.py' 2026-04-16T01:38:31,387 adding 'varcode/annotators/__init__.py' 2026-04-16T01:38:31,388 adding 'varcode/annotators/legacy.py' 2026-04-16T01:38:31,390 adding 'varcode/annotators/registry.py' 2026-04-16T01:38:31,392 adding 'varcode/annotators/sequence_diff.py' 2026-04-16T01:38:31,394 adding 'varcode/cli/__init__.py' 2026-04-16T01:38:31,395 adding 'varcode/cli/effects_script.py' 2026-04-16T01:38:31,397 adding 'varcode/cli/genes_script.py' 2026-04-16T01:38:31,398 adding 'varcode/cli/logging.conf' 2026-04-16T01:38:31,400 adding 'varcode/cli/variant_args.py' 2026-04-16T01:38:31,401 adding 'varcode/cli/version_info.py' 2026-04-16T01:38:31,403 adding 'varcode/effects/__init__.py' 2026-04-16T01:38:31,405 adding 'varcode/effects/codon_tables.py' 2026-04-16T01:38:31,407 adding 'varcode/effects/common.py' 2026-04-16T01:38:31,410 adding 'varcode/effects/effect_classes.py' 2026-04-16T01:38:31,413 adding 'varcode/effects/effect_collection.py' 2026-04-16T01:38:31,415 adding 'varcode/effects/effect_helpers.py' 2026-04-16T01:38:31,418 adding 'varcode/effects/effect_ordering.py' 2026-04-16T01:38:31,421 adding 'varcode/effects/effect_prediction.py' 2026-04-16T01:38:31,422 adding 'varcode/effects/effect_prediction_coding.py' 2026-04-16T01:38:31,424 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-04-16T01:38:31,426 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-04-16T01:38:31,428 adding 'varcode/effects/fast_path.py' 2026-04-16T01:38:31,429 adding 'varcode/effects/mutate.py' 2026-04-16T01:38:31,430 adding 'varcode/effects/transcript_helpers.py' 2026-04-16T01:38:31,432 adding 'varcode/effects/translate.py' 2026-04-16T01:38:31,436 adding 'varcode-2.8.0.dist-info/licenses/LICENSE' 2026-04-16T01:38:31,438 adding 'varcode-2.8.0.dist-info/METADATA' 2026-04-16T01:38:31,439 adding 'varcode-2.8.0.dist-info/WHEEL' 2026-04-16T01:38:31,440 adding 'varcode-2.8.0.dist-info/entry_points.txt' 2026-04-16T01:38:31,441 adding 'varcode-2.8.0.dist-info/top_level.txt' 2026-04-16T01:38:31,442 adding 'varcode-2.8.0.dist-info/RECORD' 2026-04-16T01:38:31,445 removing build/bdist.linux-armv7l/wheel 2026-04-16T01:38:31,556 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-04-16T01:38:31,563 Created wheel for varcode: filename=varcode-2.8.0-py3-none-any.whl size=129313 sha256=f03117473fc64217be50fe91b87580995030047fe0b41d044aa4a17a972d6128 2026-04-16T01:38:31,564 Stored in directory: /tmp/pip-ephem-wheel-cache-eoi9zuia/wheels/04/33/f7/7ba08e7805a97790475e5cde2f08276fa8edbed0cbd94c3bdf 2026-04-16T01:38:31,577 Successfully built varcode 2026-04-16T01:38:31,583 Removed build tracker: '/tmp/pip-build-tracker-z567lu7j'