2026-04-16T17:49:05,786 Created temporary directory: /tmp/pip-ephem-wheel-cache-aef90xny 2026-04-16T17:49:05,787 Created temporary directory: /tmp/pip-build-tracker-layp5s8q 2026-04-16T17:49:05,788 Initialized build tracking at /tmp/pip-build-tracker-layp5s8q 2026-04-16T17:49:05,788 Created build tracker: /tmp/pip-build-tracker-layp5s8q 2026-04-16T17:49:05,789 Entered build tracker: /tmp/pip-build-tracker-layp5s8q 2026-04-16T17:49:05,790 Created temporary directory: /tmp/pip-wheel-8ff21cdh 2026-04-16T17:49:05,793 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-16T17:49:05,795 Created temporary directory: /tmp/pip-ephem-wheel-cache-50v33vjl 2026-04-16T17:49:05,819 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-16T17:49:05,822 2 location(s) to search for versions of topiary: 2026-04-16T17:49:05,822 * https://pypi.org/simple/topiary/ 2026-04-16T17:49:05,822 * https://www.piwheels.org/simple/topiary/ 2026-04-16T17:49:05,823 Fetching project page and analyzing links: https://pypi.org/simple/topiary/ 2026-04-16T17:49:05,824 Getting page https://pypi.org/simple/topiary/ 2026-04-16T17:49:05,825 Found index url https://pypi.org/simple 2026-04-16T17:49:06,055 Fetched page https://pypi.org/simple/topiary/ as application/vnd.pypi.simple.v1+json 2026-04-16T17:49:06,071 Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz (from 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https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,358 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.0.0-py3-none-any.whl#sha256=bf376c02311efd5c80a0793be89ae4a34d82ab5397b5861dd664ce96d3e48a38 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,359 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.1-py3-none-any.whl#sha256=bc761dde043d0b6aa59153fc4cef4c3f4173d9cc2af622fc8263962c2fc21f0d (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,360 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.0-py3-none-any.whl#sha256=311e8283cb60ad0d52bad801d50774f6634e70f8998da593fb6bd3b2bc6ffa65 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,360 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.2-py3-none-any.whl#sha256=e7a1c96210356871a2273cd29f1899190e3ed5683d4a4572088cd945d1f5e758 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,361 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.0-py3-none-any.whl#sha256=46f5f6e4d2071e7711aa10d069defad14ffdf877b255780830a6cf6e42b61d5f (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,361 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.21-py3-none-any.whl#sha256=3983f7c3fbcff8c1a577833c364c6e99c1d98ac9955c3696439f59d8faa8eeda (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,362 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.20-py3-none-any.whl#sha256=3fb43551e5d6896e3e54f5a33a29922523c71c15b3849801206d04a8c4805350 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,362 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.19-py3-none-any.whl#sha256=0bdd9a0f991558f802326026fec79812c40392013a16fa27d697a9c37d0cf12c (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,363 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.18-py3-none-any.whl#sha256=9e812f2912a401afd7be2c4905413e0c158d97a57ddd49a478edb0b8d9805a28 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,363 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.17-py3-none-any.whl#sha256=9caa65a5a200720510e1c38a256ba0ee4702a443d0c0f9e56724aaa16b907517 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,364 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.16-py3-none-any.whl#sha256=1cce9bca3cbb426edd71bbf7bbd1c069b0498c46d67ce549315317b0f75ab1d6 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,365 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.15-py3-none-any.whl#sha256=ca5ae7481368a4fb5d839d1ac3cab6823cbebeb2733ef0e9c6b2275854eb895f (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,365 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.14-py3-none-any.whl#sha256=48e8744f89c7f03717c8e36a17ede28b495b845c7106cb5638c216db27054fad (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,365 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.13-py3-none-any.whl#sha256=588396661f87bea8be890d90c6800ac4825d06ae7db1c50c98a1978fe9c45bd3 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,366 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.10-py3-none-any.whl#sha256=56bea0cecf1273a44cd2e51ad294714c41e0fb7d9cc0b16382709573c4ec9443 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,366 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.9-py3-none-any.whl#sha256=da4dc4334fdf5cb89b68356e11737c8dab86fd100b9c7979e95eac3dc58fbd6d (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,367 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.8-py3-none-any.whl#sha256=12b4f283d8fbedbd316649be8833a17fee852097f1e5cd8963264e6c4a2721e0 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,367 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.7-py3-none-any.whl#sha256=6e23dbd38e19c12b658a8373b501f1e929c6fd3420749dee506a82b60b190d42 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,368 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.6-py3-none-any.whl#sha256=f3b597a0744c3a7540c3ffe571b8f4fad3d2ad40ddc6198952e2aee7c96ff82c (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,369 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.5-py3-none-any.whl#sha256=52f489eb5876b619e9988ee4c2fabec4df1a087c2f67f96cbb99ece92eb57576 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,369 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.4-py3-none-any.whl#sha256=5c94fb56e54399233efc5f88a6f6cfe2914773c5b2aa67a24f6ddf6089561b3b (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,370 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.3-py3-none-any.whl#sha256=197f9da38cd367d77acaec6282f0d22aefaf1e1ab6754379f671902958348f15 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,370 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.2-py3-none-any.whl#sha256=accaff90bafe6c929aece0f65b8ccedd45839064bf361d8f69bfefd543127ec2 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,371 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.1-py3-none-any.whl#sha256=6743a02aee34bc7567913bbe5c15a321924d9e1cb2c15f956e4ebb9b321707f4 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,371 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.0-py3-none-any.whl#sha256=a4de4e13dc8561c43fd350094d3cbc3267e0faacf5e65b94501ef15affdf51e6 (from https://www.piwheels.org/simple/topiary/) 2026-04-16T17:49:06,372 Skipping link: not a file: https://www.piwheels.org/simple/topiary/ 2026-04-16T17:49:06,373 Skipping link: not a file: https://pypi.org/simple/topiary/ 2026-04-16T17:49:06,400 Given no hashes to check 1 links for project 'topiary': discarding no candidates 2026-04-16T17:49:06,419 Collecting topiary==5.9.0 2026-04-16T17:49:06,422 Created temporary directory: /tmp/pip-unpack-ziqhwads 2026-04-16T17:49:06,571 Downloading topiary-5.9.0.tar.gz (203 kB) 2026-04-16T17:49:06,853 Added topiary==5.9.0 from https://files.pythonhosted.org/packages/a4/3f/60df7e38d6f16365cc9e7ade45ad1943cdf8a5ca14d97430247073dbd9a4/topiary-5.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-layp5s8q' 2026-04-16T17:49:06,857 Created temporary directory: /tmp/pip-build-env-vtmsdofh 2026-04-16T17:49:06,862 Installing build dependencies: started 2026-04-16T17:49:06,863 Running command pip subprocess to install build dependencies 2026-04-16T17:49:08,022 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-16T17:49:08,506 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-16T17:49:08,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-16T17:49:10,286 Collecting setuptools>=64 2026-04-16T17:49:10,369 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-16T17:49:13,360 Installing collected packages: setuptools 2026-04-16T17:49:16,419 Successfully installed setuptools-82.0.1 2026-04-16T17:49:16,689 Installing build dependencies: finished with status 'done' 2026-04-16T17:49:16,696 Getting requirements to build wheel: started 2026-04-16T17:49:16,697 Running command Getting requirements to build wheel 2026-04-16T17:49:17,377 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:17,377 !! 2026-04-16T17:49:17,378 ******************************************************************************** 2026-04-16T17:49:17,379 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:17,380 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:17,381 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:17,382 ******************************************************************************** 2026-04-16T17:49:17,383 !! 2026-04-16T17:49:17,383 dist._finalize_license_expression() 2026-04-16T17:49:17,384 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:17,384 !! 2026-04-16T17:49:17,386 ******************************************************************************** 2026-04-16T17:49:17,386 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:17,388 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:17,389 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:17,390 ******************************************************************************** 2026-04-16T17:49:17,391 !! 2026-04-16T17:49:17,391 self._finalize_license_expression() 2026-04-16T17:49:17,392 running egg_info 2026-04-16T17:49:17,395 writing topiary.egg-info/PKG-INFO 2026-04-16T17:49:17,399 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-04-16T17:49:17,400 writing entry points to topiary.egg-info/entry_points.txt 2026-04-16T17:49:17,402 writing requirements to topiary.egg-info/requires.txt 2026-04-16T17:49:17,403 writing top-level names to topiary.egg-info/top_level.txt 2026-04-16T17:49:17,430 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:17,436 adding license file 'LICENSE' 2026-04-16T17:49:17,442 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:17,540 Getting requirements to build wheel: finished with status 'done' 2026-04-16T17:49:17,543 Created temporary directory: /tmp/pip-modern-metadata-cn_l3v4s 2026-04-16T17:49:17,545 Preparing metadata (pyproject.toml): started 2026-04-16T17:49:17,546 Running command Preparing metadata (pyproject.toml) 2026-04-16T17:49:18,189 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:18,190 !! 2026-04-16T17:49:18,190 ******************************************************************************** 2026-04-16T17:49:18,191 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:18,192 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:18,193 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:18,193 ******************************************************************************** 2026-04-16T17:49:18,195 !! 2026-04-16T17:49:18,195 dist._finalize_license_expression() 2026-04-16T17:49:18,196 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:18,196 !! 2026-04-16T17:49:18,197 ******************************************************************************** 2026-04-16T17:49:18,198 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:18,199 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:18,201 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:18,201 ******************************************************************************** 2026-04-16T17:49:18,203 !! 2026-04-16T17:49:18,203 self._finalize_license_expression() 2026-04-16T17:49:18,204 running dist_info 2026-04-16T17:49:18,213 creating /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info 2026-04-16T17:49:18,214 writing /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/PKG-INFO 2026-04-16T17:49:18,218 writing dependency_links to /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/dependency_links.txt 2026-04-16T17:49:18,220 writing entry points to /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/entry_points.txt 2026-04-16T17:49:18,221 writing requirements to /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/requires.txt 2026-04-16T17:49:18,222 writing top-level names to /tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/top_level.txt 2026-04-16T17:49:18,223 writing manifest file '/tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:18,249 reading manifest file '/tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:18,251 adding license file 'LICENSE' 2026-04-16T17:49:18,256 writing manifest file '/tmp/pip-modern-metadata-cn_l3v4s/topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:18,257 creating '/tmp/pip-modern-metadata-cn_l3v4s/topiary-5.9.0.dist-info' 2026-04-16T17:49:18,382 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-16T17:49:18,388 Source in /tmp/pip-wheel-8ff21cdh/topiary_f6e983d494d6431484346697e59a7db2 has version 5.9.0, which satisfies requirement topiary==5.9.0 from https://files.pythonhosted.org/packages/a4/3f/60df7e38d6f16365cc9e7ade45ad1943cdf8a5ca14d97430247073dbd9a4/topiary-5.9.0.tar.gz 2026-04-16T17:49:18,389 Removed topiary==5.9.0 from https://files.pythonhosted.org/packages/a4/3f/60df7e38d6f16365cc9e7ade45ad1943cdf8a5ca14d97430247073dbd9a4/topiary-5.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-layp5s8q' 2026-04-16T17:49:18,397 Created temporary directory: /tmp/pip-unpack-jmy2d89u 2026-04-16T17:49:18,397 Building wheels for collected packages: topiary 2026-04-16T17:49:18,401 Created temporary directory: /tmp/pip-wheel-daybvu_o 2026-04-16T17:49:18,402 Destination directory: /tmp/pip-wheel-daybvu_o 2026-04-16T17:49:18,404 Building wheel for topiary (pyproject.toml): started 2026-04-16T17:49:18,405 Running command Building wheel for topiary (pyproject.toml) 2026-04-16T17:49:19,029 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:19,029 !! 2026-04-16T17:49:19,030 ******************************************************************************** 2026-04-16T17:49:19,031 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:19,032 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:19,033 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:19,034 ******************************************************************************** 2026-04-16T17:49:19,035 !! 2026-04-16T17:49:19,035 dist._finalize_license_expression() 2026-04-16T17:49:19,036 /tmp/pip-build-env-vtmsdofh/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-16T17:49:19,037 !! 2026-04-16T17:49:19,038 ******************************************************************************** 2026-04-16T17:49:19,039 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-16T17:49:19,040 License :: OSI Approved :: Apache Software License 2026-04-16T17:49:19,041 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-16T17:49:19,042 ******************************************************************************** 2026-04-16T17:49:19,043 !! 2026-04-16T17:49:19,044 self._finalize_license_expression() 2026-04-16T17:49:19,044 running bdist_wheel 2026-04-16T17:49:19,058 running build 2026-04-16T17:49:19,059 running build_py 2026-04-16T17:49:19,065 creating build/lib/topiary 2026-04-16T17:49:19,067 copying topiary/io_lens.py -> build/lib/topiary 2026-04-16T17:49:19,070 copying topiary/properties.py -> build/lib/topiary 2026-04-16T17:49:19,073 copying topiary/result.py -> build/lib/topiary 2026-04-16T17:49:19,075 copying topiary/inputs.py -> build/lib/topiary 2026-04-16T17:49:19,078 copying topiary/wide.py -> build/lib/topiary 2026-04-16T17:49:19,080 copying topiary/io_protein_fragment.py -> build/lib/topiary 2026-04-16T17:49:19,083 copying topiary/cached.py -> build/lib/topiary 2026-04-16T17:49:19,086 copying topiary/predictor.py -> build/lib/topiary 2026-04-16T17:49:19,090 copying topiary/protein_fragment.py -> build/lib/topiary 2026-04-16T17:49:19,093 copying topiary/self_proteome.py -> build/lib/topiary 2026-04-16T17:49:19,097 copying topiary/filters.py -> build/lib/topiary 2026-04-16T17:49:19,099 copying topiary/sequence_helpers.py -> build/lib/topiary 2026-04-16T17:49:19,101 copying topiary/io.py -> build/lib/topiary 2026-04-16T17:49:19,104 copying topiary/sources.py -> build/lib/topiary 2026-04-16T17:49:19,106 copying topiary/__init__.py -> build/lib/topiary 2026-04-16T17:49:19,110 creating build/lib/tests 2026-04-16T17:49:19,111 copying tests/test_dataframe.py -> build/lib/tests 2026-04-16T17:49:19,113 copying tests/test_dsl_polish.py -> build/lib/tests 2026-04-16T17:49:19,116 copying tests/test_io_lens.py -> build/lib/tests 2026-04-16T17:49:19,118 copying tests/test_cli_cached_predictor.py -> build/lib/tests 2026-04-16T17:49:19,120 copying tests/test_dsl_extensions.py -> build/lib/tests 2026-04-16T17:49:19,123 copying tests/test_validation_and_edge_cases.py -> build/lib/tests 2026-04-16T17:49:19,126 copying tests/test_predictor_internals.py -> build/lib/tests 2026-04-16T17:49:19,128 copying tests/data.py -> build/lib/tests 2026-04-16T17:49:19,130 copying tests/test_predict_from_fragments.py -> build/lib/tests 2026-04-16T17:49:19,132 copying tests/test_sequence_helpers.py -> build/lib/tests 2026-04-16T17:49:19,135 copying tests/test_variant_expression_filters.py -> build/lib/tests 2026-04-16T17:49:19,137 copying tests/test_wide.py -> build/lib/tests 2026-04-16T17:49:19,139 copying tests/test_inputs.py -> build/lib/tests 2026-04-16T17:49:19,141 copying tests/test_integration.py -> build/lib/tests 2026-04-16T17:49:19,143 copying tests/test_peptide_mutation_interval.py -> build/lib/tests 2026-04-16T17:49:19,145 copying tests/test_edge_case_fixtures.py -> build/lib/tests 2026-04-16T17:49:19,147 copying tests/test_frameshift_fragments.py -> build/lib/tests 2026-04-16T17:49:19,150 copying tests/test_effect_expression_filters.py -> build/lib/tests 2026-04-16T17:49:19,152 copying tests/test_result.py -> build/lib/tests 2026-04-16T17:49:19,155 copying tests/test_epitopes_from_commandline_args.py -> build/lib/tests 2026-04-16T17:49:19,157 copying tests/test_cli_protein_changes.py -> build/lib/tests 2026-04-16T17:49:19,159 copying tests/test_expression_loader.py -> build/lib/tests 2026-04-16T17:49:19,161 copying tests/test_cli_coverage.py -> build/lib/tests 2026-04-16T17:49:19,164 copying tests/test_end_to_end.py -> build/lib/tests 2026-04-16T17:49:19,166 copying tests/test_ranking.py -> build/lib/tests 2026-04-16T17:49:19,170 copying tests/test_cached_predictor.py -> build/lib/tests 2026-04-16T17:49:19,173 copying tests/test_sources_optional.py -> build/lib/tests 2026-04-16T17:49:19,175 copying tests/test_predict_from_variants_refactor.py -> build/lib/tests 2026-04-16T17:49:19,178 copying tests/test_load_stringtie_gtf_fpkm.py -> build/lib/tests 2026-04-16T17:49:19,180 copying tests/test_contains_mutant_residues.py -> build/lib/tests 2026-04-16T17:49:19,181 copying tests/test_mutant_epitope_predictions_class1.py -> build/lib/tests 2026-04-16T17:49:19,183 copying tests/test_direct_input_regressions.py -> build/lib/tests 2026-04-16T17:49:19,185 copying tests/test_cli_ranking.py -> build/lib/tests 2026-04-16T17:49:19,188 copying tests/test_padding.py -> build/lib/tests 2026-04-16T17:49:19,190 copying tests/test_args_outputs.py -> build/lib/tests 2026-04-16T17:49:19,192 copying tests/test_rna_helpers.py -> build/lib/tests 2026-04-16T17:49:19,194 copying tests/test_protein_fragment.py -> build/lib/tests 2026-04-16T17:49:19,196 copying tests/test_load_cufflinks_fpkm.py -> build/lib/tests 2026-04-16T17:49:19,199 copying tests/test_self_proteome.py -> build/lib/tests 2026-04-16T17:49:19,201 copying tests/test_mutant_epitope_predictions_class2.py -> build/lib/tests 2026-04-16T17:49:19,203 copying tests/test_dsl_roundtrip.py -> build/lib/tests 2026-04-16T17:49:19,206 copying tests/common.py -> build/lib/tests 2026-04-16T17:49:19,208 copying tests/test_coverage_gaps.py -> build/lib/tests 2026-04-16T17:49:19,211 copying tests/__init__.py -> build/lib/tests 2026-04-16T17:49:19,212 copying tests/test_sources.py -> build/lib/tests 2026-04-16T17:49:19,214 copying tests/test_expression_integration.py -> build/lib/tests 2026-04-16T17:49:19,217 copying tests/test_io.py -> build/lib/tests 2026-04-16T17:49:19,220 creating build/lib/topiary/ranking 2026-04-16T17:49:19,221 copying topiary/ranking/nodes.py -> build/lib/topiary/ranking 2026-04-16T17:49:19,224 copying topiary/ranking/parser.py -> build/lib/topiary/ranking 2026-04-16T17:49:19,227 copying topiary/ranking/__init__.py -> build/lib/topiary/ranking 2026-04-16T17:49:19,228 copying topiary/ranking/apply.py -> build/lib/topiary/ranking 2026-04-16T17:49:19,231 creating build/lib/topiary/cli 2026-04-16T17:49:19,232 copying topiary/cli/protein_changes.py -> build/lib/topiary/cli 2026-04-16T17:49:19,235 copying topiary/cli/errors.py -> build/lib/topiary/cli 2026-04-16T17:49:19,236 copying topiary/cli/outputs.py -> build/lib/topiary/cli 2026-04-16T17:49:19,238 copying topiary/cli/sequence.py -> build/lib/topiary/cli 2026-04-16T17:49:19,240 copying topiary/cli/filtering.py -> build/lib/topiary/cli 2026-04-16T17:49:19,242 copying topiary/cli/cached_predictor.py -> build/lib/topiary/cli 2026-04-16T17:49:19,244 copying topiary/cli/args.py -> build/lib/topiary/cli 2026-04-16T17:49:19,247 copying topiary/cli/rna.py -> build/lib/topiary/cli 2026-04-16T17:49:19,249 copying topiary/cli/__init__.py -> build/lib/topiary/cli 2026-04-16T17:49:19,251 copying topiary/cli/script.py -> build/lib/topiary/cli 2026-04-16T17:49:19,253 creating build/lib/topiary/rna 2026-04-16T17:49:19,254 copying topiary/rna/gtf.py -> build/lib/topiary/rna 2026-04-16T17:49:19,256 copying topiary/rna/expression_loader.py -> build/lib/topiary/rna 2026-04-16T17:49:19,259 copying topiary/rna/cufflinks.py -> build/lib/topiary/rna 2026-04-16T17:49:19,261 copying topiary/rna/common.py -> build/lib/topiary/rna 2026-04-16T17:49:19,263 copying topiary/rna/__init__.py -> build/lib/topiary/rna 2026-04-16T17:49:19,264 running egg_info 2026-04-16T17:49:19,274 writing topiary.egg-info/PKG-INFO 2026-04-16T17:49:19,277 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-04-16T17:49:19,279 writing entry points to topiary.egg-info/entry_points.txt 2026-04-16T17:49:19,280 writing requirements to topiary.egg-info/requires.txt 2026-04-16T17:49:19,281 writing top-level names to topiary.egg-info/top_level.txt 2026-04-16T17:49:19,298 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:19,304 adding license file 'LICENSE' 2026-04-16T17:49:19,310 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-04-16T17:49:19,327 installing to build/bdist.linux-armv7l/wheel 2026-04-16T17:49:19,328 running install 2026-04-16T17:49:19,351 running install_lib 2026-04-16T17:49:19,356 creating build/bdist.linux-armv7l/wheel 2026-04-16T17:49:19,358 creating build/bdist.linux-armv7l/wheel/topiary 2026-04-16T17:49:19,359 copying build/lib/topiary/io_lens.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,362 copying build/lib/topiary/properties.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,365 creating build/bdist.linux-armv7l/wheel/topiary/ranking 2026-04-16T17:49:19,366 copying build/lib/topiary/ranking/nodes.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-04-16T17:49:19,369 copying build/lib/topiary/ranking/parser.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-04-16T17:49:19,371 copying build/lib/topiary/ranking/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-04-16T17:49:19,373 copying build/lib/topiary/ranking/apply.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-04-16T17:49:19,376 creating build/bdist.linux-armv7l/wheel/topiary/cli 2026-04-16T17:49:19,377 copying build/lib/topiary/cli/protein_changes.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,379 copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,381 copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,383 copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,385 copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,387 copying build/lib/topiary/cli/cached_predictor.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,389 copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,392 copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,394 copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,395 copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-04-16T17:49:19,397 copying build/lib/topiary/result.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,400 copying build/lib/topiary/inputs.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,402 creating build/bdist.linux-armv7l/wheel/topiary/rna 2026-04-16T17:49:19,403 copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-16T17:49:19,405 copying build/lib/topiary/rna/expression_loader.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-16T17:49:19,408 copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-16T17:49:19,410 copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-16T17:49:19,412 copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-04-16T17:49:19,414 copying build/lib/topiary/wide.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,416 copying build/lib/topiary/io_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,418 copying build/lib/topiary/cached.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,421 copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,424 copying build/lib/topiary/protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,426 copying build/lib/topiary/self_proteome.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,429 copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,431 copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,433 copying build/lib/topiary/io.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,436 copying build/lib/topiary/sources.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,438 copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-04-16T17:49:19,441 creating build/bdist.linux-armv7l/wheel/tests 2026-04-16T17:49:19,442 copying build/lib/tests/test_dataframe.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,444 copying build/lib/tests/test_dsl_polish.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,447 copying build/lib/tests/test_io_lens.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,450 copying build/lib/tests/test_cli_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,452 copying build/lib/tests/test_dsl_extensions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,455 copying build/lib/tests/test_validation_and_edge_cases.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,457 copying build/lib/tests/test_predictor_internals.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,459 copying build/lib/tests/data.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,461 copying build/lib/tests/test_predict_from_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,464 copying build/lib/tests/test_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,466 copying build/lib/tests/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,468 copying build/lib/tests/test_wide.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,470 copying build/lib/tests/test_inputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,472 copying build/lib/tests/test_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,474 copying build/lib/tests/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,476 copying build/lib/tests/test_edge_case_fixtures.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,478 copying build/lib/tests/test_frameshift_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,480 copying build/lib/tests/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,482 copying build/lib/tests/test_result.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,485 copying build/lib/tests/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,486 copying build/lib/tests/test_cli_protein_changes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,488 copying build/lib/tests/test_expression_loader.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,490 copying build/lib/tests/test_cli_coverage.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,492 copying build/lib/tests/test_end_to_end.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,495 copying build/lib/tests/test_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,498 copying build/lib/tests/test_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,501 copying build/lib/tests/test_sources_optional.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,503 copying build/lib/tests/test_predict_from_variants_refactor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,505 copying build/lib/tests/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,507 copying build/lib/tests/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,508 copying build/lib/tests/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,510 copying build/lib/tests/test_direct_input_regressions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,512 copying build/lib/tests/test_cli_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,514 copying build/lib/tests/test_padding.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,516 copying build/lib/tests/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,518 copying build/lib/tests/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,520 copying build/lib/tests/test_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,522 copying build/lib/tests/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,524 copying build/lib/tests/test_self_proteome.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,527 copying build/lib/tests/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,528 copying build/lib/tests/test_dsl_roundtrip.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,531 copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,533 copying build/lib/tests/test_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,535 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,536 copying build/lib/tests/test_sources.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,538 copying build/lib/tests/test_expression_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,541 copying build/lib/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-16T17:49:19,543 running install_egg_info 2026-04-16T17:49:19,548 Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/./topiary-5.9.0-py3.11.egg-info 2026-04-16T17:49:19,560 running install_scripts 2026-04-16T17:49:19,572 creating build/bdist.linux-armv7l/wheel/topiary-5.9.0.dist-info/WHEEL 2026-04-16T17:49:19,575 creating '/tmp/pip-wheel-daybvu_o/.tmp-7up4qzcw/topiary-5.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-16T17:49:19,577 adding 'tests/__init__.py' 2026-04-16T17:49:19,579 adding 'tests/common.py' 2026-04-16T17:49:19,580 adding 'tests/data.py' 2026-04-16T17:49:19,582 adding 'tests/test_args_outputs.py' 2026-04-16T17:49:19,586 adding 'tests/test_cached_predictor.py' 2026-04-16T17:49:19,588 adding 'tests/test_cli_cached_predictor.py' 2026-04-16T17:49:19,590 adding 'tests/test_cli_coverage.py' 2026-04-16T17:49:19,591 adding 'tests/test_cli_protein_changes.py' 2026-04-16T17:49:19,593 adding 'tests/test_cli_ranking.py' 2026-04-16T17:49:19,594 adding 'tests/test_contains_mutant_residues.py' 2026-04-16T17:49:19,596 adding 'tests/test_coverage_gaps.py' 2026-04-16T17:49:19,597 adding 'tests/test_dataframe.py' 2026-04-16T17:49:19,599 adding 'tests/test_direct_input_regressions.py' 2026-04-16T17:49:19,601 adding 'tests/test_dsl_extensions.py' 2026-04-16T17:49:19,603 adding 'tests/test_dsl_polish.py' 2026-04-16T17:49:19,605 adding 'tests/test_dsl_roundtrip.py' 2026-04-16T17:49:19,607 adding 'tests/test_edge_case_fixtures.py' 2026-04-16T17:49:19,608 adding 'tests/test_effect_expression_filters.py' 2026-04-16T17:49:19,610 adding 'tests/test_end_to_end.py' 2026-04-16T17:49:19,611 adding 'tests/test_epitopes_from_commandline_args.py' 2026-04-16T17:49:19,613 adding 'tests/test_expression_integration.py' 2026-04-16T17:49:19,614 adding 'tests/test_expression_loader.py' 2026-04-16T17:49:19,617 adding 'tests/test_frameshift_fragments.py' 2026-04-16T17:49:19,618 adding 'tests/test_inputs.py' 2026-04-16T17:49:19,620 adding 'tests/test_integration.py' 2026-04-16T17:49:19,621 adding 'tests/test_io.py' 2026-04-16T17:49:19,624 adding 'tests/test_io_lens.py' 2026-04-16T17:49:19,625 adding 'tests/test_load_cufflinks_fpkm.py' 2026-04-16T17:49:19,626 adding 'tests/test_load_stringtie_gtf_fpkm.py' 2026-04-16T17:49:19,627 adding 'tests/test_mutant_epitope_predictions_class1.py' 2026-04-16T17:49:19,629 adding 'tests/test_mutant_epitope_predictions_class2.py' 2026-04-16T17:49:19,630 adding 'tests/test_padding.py' 2026-04-16T17:49:19,631 adding 'tests/test_peptide_mutation_interval.py' 2026-04-16T17:49:19,633 adding 'tests/test_predict_from_fragments.py' 2026-04-16T17:49:19,636 adding 'tests/test_predict_from_variants_refactor.py' 2026-04-16T17:49:19,637 adding 'tests/test_predictor_internals.py' 2026-04-16T17:49:19,639 adding 'tests/test_protein_fragment.py' 2026-04-16T17:49:19,646 adding 'tests/test_ranking.py' 2026-04-16T17:49:19,648 adding 'tests/test_result.py' 2026-04-16T17:49:19,650 adding 'tests/test_rna_helpers.py' 2026-04-16T17:49:19,652 adding 'tests/test_self_proteome.py' 2026-04-16T17:49:19,654 adding 'tests/test_sequence_helpers.py' 2026-04-16T17:49:19,655 adding 'tests/test_sources.py' 2026-04-16T17:49:19,657 adding 'tests/test_sources_optional.py' 2026-04-16T17:49:19,659 adding 'tests/test_validation_and_edge_cases.py' 2026-04-16T17:49:19,660 adding 'tests/test_variant_expression_filters.py' 2026-04-16T17:49:19,662 adding 'tests/test_wide.py' 2026-04-16T17:49:19,664 adding 'topiary/__init__.py' 2026-04-16T17:49:19,670 adding 'topiary/cached.py' 2026-04-16T17:49:19,671 adding 'topiary/filters.py' 2026-04-16T17:49:19,673 adding 'topiary/inputs.py' 2026-04-16T17:49:19,675 adding 'topiary/io.py' 2026-04-16T17:49:19,677 adding 'topiary/io_lens.py' 2026-04-16T17:49:19,678 adding 'topiary/io_protein_fragment.py' 2026-04-16T17:49:19,682 adding 'topiary/predictor.py' 2026-04-16T17:49:19,685 adding 'topiary/properties.py' 2026-04-16T17:49:19,687 adding 'topiary/protein_fragment.py' 2026-04-16T17:49:19,689 adding 'topiary/result.py' 2026-04-16T17:49:19,693 adding 'topiary/self_proteome.py' 2026-04-16T17:49:19,694 adding 'topiary/sequence_helpers.py' 2026-04-16T17:49:19,696 adding 'topiary/sources.py' 2026-04-16T17:49:19,698 adding 'topiary/wide.py' 2026-04-16T17:49:19,700 adding 'topiary/cli/__init__.py' 2026-04-16T17:49:19,702 adding 'topiary/cli/args.py' 2026-04-16T17:49:19,704 adding 'topiary/cli/cached_predictor.py' 2026-04-16T17:49:19,705 adding 'topiary/cli/errors.py' 2026-04-16T17:49:19,707 adding 'topiary/cli/filtering.py' 2026-04-16T17:49:19,708 adding 'topiary/cli/outputs.py' 2026-04-16T17:49:19,709 adding 'topiary/cli/protein_changes.py' 2026-04-16T17:49:19,711 adding 'topiary/cli/rna.py' 2026-04-16T17:49:19,712 adding 'topiary/cli/script.py' 2026-04-16T17:49:19,713 adding 'topiary/cli/sequence.py' 2026-04-16T17:49:19,715 adding 'topiary/ranking/__init__.py' 2026-04-16T17:49:19,716 adding 'topiary/ranking/apply.py' 2026-04-16T17:49:19,722 adding 'topiary/ranking/nodes.py' 2026-04-16T17:49:19,724 adding 'topiary/ranking/parser.py' 2026-04-16T17:49:19,726 adding 'topiary/rna/__init__.py' 2026-04-16T17:49:19,727 adding 'topiary/rna/common.py' 2026-04-16T17:49:19,729 adding 'topiary/rna/cufflinks.py' 2026-04-16T17:49:19,731 adding 'topiary/rna/expression_loader.py' 2026-04-16T17:49:19,732 adding 'topiary/rna/gtf.py' 2026-04-16T17:49:19,736 adding 'topiary-5.9.0.dist-info/licenses/LICENSE' 2026-04-16T17:49:19,739 adding 'topiary-5.9.0.dist-info/METADATA' 2026-04-16T17:49:19,740 adding 'topiary-5.9.0.dist-info/WHEEL' 2026-04-16T17:49:19,741 adding 'topiary-5.9.0.dist-info/entry_points.txt' 2026-04-16T17:49:19,742 adding 'topiary-5.9.0.dist-info/top_level.txt' 2026-04-16T17:49:19,743 adding 'topiary-5.9.0.dist-info/RECORD' 2026-04-16T17:49:19,747 removing build/bdist.linux-armv7l/wheel 2026-04-16T17:49:19,865 Building wheel for topiary (pyproject.toml): finished with status 'done' 2026-04-16T17:49:19,875 Created wheel for topiary: filename=topiary-5.9.0-py3-none-any.whl size=229925 sha256=94ec090d0f2805af5bdc4039e5d4b2ce2f2e3e26beb02f61f1991ad03cc43f0b 2026-04-16T17:49:19,877 Stored in directory: /tmp/pip-ephem-wheel-cache-50v33vjl/wheels/bd/6a/5f/d57a8168191df205ecf7c8defadc385a1572b7f718ea2178f9 2026-04-16T17:49:19,894 Successfully built topiary 2026-04-16T17:49:19,903 Removed build tracker: '/tmp/pip-build-tracker-layp5s8q'