2026-04-18T02:37:54,397 Created temporary directory: /tmp/pip-ephem-wheel-cache-5fphfbxo
2026-04-18T02:37:54,399 Created temporary directory: /tmp/pip-build-tracker-t5sbrwma
2026-04-18T02:37:54,399 Initialized build tracking at /tmp/pip-build-tracker-t5sbrwma
2026-04-18T02:37:54,400 Created build tracker: /tmp/pip-build-tracker-t5sbrwma
2026-04-18T02:37:54,400 Entered build tracker: /tmp/pip-build-tracker-t5sbrwma
2026-04-18T02:37:54,401 Created temporary directory: /tmp/pip-wheel-yftj7xda
2026-04-18T02:37:54,404 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-18T02:37:54,407 Created temporary directory: /tmp/pip-ephem-wheel-cache-5bmdbjn9
2026-04-18T02:37:54,432 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-18T02:37:54,435 2 location(s) to search for versions of protfasta:
2026-04-18T02:37:54,435 * https://pypi.org/simple/protfasta/
2026-04-18T02:37:54,435 * https://www.piwheels.org/simple/protfasta/
2026-04-18T02:37:54,436 Fetching project page and analyzing links: https://pypi.org/simple/protfasta/
2026-04-18T02:37:54,437 Getting page https://pypi.org/simple/protfasta/
2026-04-18T02:37:54,438 Found index url https://pypi.org/simple
2026-04-18T02:37:54,666 Fetched page https://pypi.org/simple/protfasta/ as application/vnd.pypi.simple.v1+json
2026-04-18T02:37:54,671   Found link https://files.pythonhosted.org/packages/b6/1d/b12d413f49524f7ea99474c3a78de44e5559c74ea790714817405bd21a70/protfasta-0.1.0.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.0
2026-04-18T02:37:54,672   Found link https://files.pythonhosted.org/packages/af/6b/3e3d39ac1d3dd90466bf3c739bbc4437e7b9ce856b3c05c0619ee2eb4e62/protfasta-0.1.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.1
2026-04-18T02:37:54,673   Found link https://files.pythonhosted.org/packages/b0/16/c4e61affed66df7417ed90bfe3973fe6d8259dec4b2e4616b89569b81a52/protfasta-0.1.2.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.2
2026-04-18T02:37:54,674   Found link https://files.pythonhosted.org/packages/c1/e3/643241544561c734493085886f80bc472754df974cd21952df7917a29c2e/protfasta-0.1.3.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.3
2026-04-18T02:37:54,675   Found link https://files.pythonhosted.org/packages/71/de/58732fef89ed8a3a45f4bc850c9127687aac82ac2694195f2ddd3dde3a37/protfasta-0.1.4.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.4.1
2026-04-18T02:37:54,676   Found link https://files.pythonhosted.org/packages/3d/1c/868d14020b262a93f9317338a8424bd713cbd3b025e4db30f63b003d1e8d/protfasta-0.1.5.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.5
2026-04-18T02:37:54,677   Found link https://files.pythonhosted.org/packages/af/66/356bfa32c76a02a1fe857dca23909000cfb2888dd9c60fb5b38cf5a118fb/protfasta-0.1.7.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.7
2026-04-18T02:37:54,678   Found link https://files.pythonhosted.org/packages/42/f8/bba7aa837021c5d138491990b6a897704c5738b344495e35a396f4efcd5a/protfasta-0.1.8.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.8
2026-04-18T02:37:54,679   Found link https://files.pythonhosted.org/packages/9f/95/e41dedf5b225dd911eec23d804f336573b5d4df81974ed07ad6223dc01ec/protfasta-0.1.9.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.9
2026-04-18T02:37:54,680   Found link https://files.pythonhosted.org/packages/bc/01/ed9be35e0b9097d6814f9a0021f2cdc8ee15c29d4c77a945cc520cbe5b07/protfasta-0.1.10.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.10
2026-04-18T02:37:54,681   Found link https://files.pythonhosted.org/packages/e9/58/2a9ed49fbf534060ba1d56d6fba982c7d7f700ab9bde09f1b7cfa993de15/protfasta-0.1.11.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.11
2026-04-18T02:37:54,682   Found link https://files.pythonhosted.org/packages/b9/bc/0e7012b9844b098b6b121ac49632f72ac415c2ebc19dbf309a045011d7b9/protfasta-0.1.12.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.12
2026-04-18T02:37:54,683   Found link https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7,<3.12.0), version: 0.1.13
2026-04-18T02:37:54,684   Found link https://files.pythonhosted.org/packages/e6/ba/57897933096f80984c0d69397229bdf22d8e5cffb8610cc1f0d7e67a83fd/protfasta-0.1.15.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.15.1
2026-04-18T02:37:54,685   Found link https://files.pythonhosted.org/packages/01/90/770b0a7411f6989c81d19e13b81df12ce95c10e46653e5276778a9384322/protfasta-0.1.15.2.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.15.2
2026-04-18T02:37:54,685   Found link https://files.pythonhosted.org/packages/62/1d/c76ef9ea542b853888a3c5c84bec7e5b87ba3cf586299cdef4727bf02f0d/protfasta-0.1.18.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.18
2026-04-18T02:37:54,686 Fetching project page and analyzing links: https://www.piwheels.org/simple/protfasta/
2026-04-18T02:37:54,687 Getting page https://www.piwheels.org/simple/protfasta/
2026-04-18T02:37:54,688 Found index url https://www.piwheels.org/simple
2026-04-18T02:37:54,860 Fetched page https://www.piwheels.org/simple/protfasta/ as text/html
2026-04-18T02:37:54,866   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.15.2-py3-none-any.whl#sha256=1caade68c7c93cf5a9136aaace666a8b2352e4f92f34226021cf275f96264a2c (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,866   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.15.1-py3-none-any.whl#sha256=5d8190970970f363c275b1b668df0bc4e2bd056c978b443fed42044cf1c6c8b1 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,867   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.13-py3-none-any.whl#sha256=0590857528201752af215a80ec43cf35b6d0da9d7ff41f5182446a7d32ac8589 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7,<3.12.0)
2026-04-18T02:37:54,868   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.12-py3-none-any.whl#sha256=9fb2c41e66622cddaa5f6f431c8777f0504e86ab01317dd6deca1edb3d3a31fd (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6)
2026-04-18T02:37:54,868   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.11-py3-none-any.whl#sha256=444fc84e257518010b395eda2039d9a3ab7ecf8fa36c643c461de09826d6586a (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6)
2026-04-18T02:37:54,869   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.10-py3-none-any.whl#sha256=2c81ab5f2689ad23ca52774e952da81069272fcab6d352ab5b5ed2acd62f4fff (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6)
2026-04-18T02:37:54,869   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.9-py3-none-any.whl#sha256=bbfd31e2c8fa8910d8c6ecdae2a8128c1c7a6bb9370221f070cfe156a5623da6 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6)
2026-04-18T02:37:54,870   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.8-py3-none-any.whl#sha256=ac8962d35239e2241ff04ef37a96a1eef001db1b0b7364eb40a1c040c9f68e65 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6)
2026-04-18T02:37:54,871   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.7-py3-none-any.whl#sha256=d29649a70d3f3029e6a2bede5e67e63b8fb84f3642786d24b9acdecd89563578 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,871   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.5-py3-none-any.whl#sha256=ef65c902eab517ea7a9c3413b5c9d08559b3c027c91474ee1b59598142994760 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,872   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.4.1-py3-none-any.whl#sha256=b28ab8b2dd5bc6d7c2408f6dc218dcc84650e0324ff7fa030ce8ce6d7d61f38e (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,872   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.3-py3-none-any.whl#sha256=91891ee7da8ca221a0422b1d779a30cba120d8ea27c573ad3909984a454ac506 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,872   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.2-py3-none-any.whl#sha256=b4d855d9f2f1db5b27d517ccb4fcbd30acfe49eef3e9ad6f1ddfc16fc90147aa (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,873   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.1-py3-none-any.whl#sha256=7536ef50f573ff13afcaed3281eb90bdcef2fd632d67501908c4d90627619005 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,873   Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.0-py3-none-any.whl#sha256=ddeb14621185337b263b2e2467f6e991300639f791ba613411bd31e98c70ac01 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7)
2026-04-18T02:37:54,874 Skipping link: not a file: https://www.piwheels.org/simple/protfasta/
2026-04-18T02:37:54,875 Skipping link: not a file: https://pypi.org/simple/protfasta/
2026-04-18T02:37:54,898 Given no hashes to check 1 links for project 'protfasta': discarding no candidates
2026-04-18T02:37:54,917 Collecting protfasta==0.1.18
2026-04-18T02:37:54,920   Created temporary directory: /tmp/pip-unpack-0bwsksr5
2026-04-18T02:37:55,080   Downloading protfasta-0.1.18.tar.gz (123 kB)
2026-04-18T02:37:55,258   Added protfasta==0.1.18 from https://files.pythonhosted.org/packages/62/1d/c76ef9ea542b853888a3c5c84bec7e5b87ba3cf586299cdef4727bf02f0d/protfasta-0.1.18.tar.gz to build tracker '/tmp/pip-build-tracker-t5sbrwma'
2026-04-18T02:37:55,265   Created temporary directory: /tmp/pip-build-env-f6h4ib0w
2026-04-18T02:37:55,269   Installing build dependencies: started
2026-04-18T02:37:55,270   Running command pip subprocess to install build dependencies
2026-04-18T02:37:56,420   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-18T02:37:56,854   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-18T02:37:56,877   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-18T02:37:58,640   Collecting setuptools>=61
2026-04-18T02:37:58,748     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-18T02:37:58,918   Collecting versioningit~=2.0
2026-04-18T02:37:59,147     Using cached https://archive1.piwheels.org/simple/versioningit/versioningit-2.3.0-py3-none-any.whl (35 kB)
2026-04-18T02:37:59,343   Collecting packaging>=17.1
2026-04-18T02:37:59,363     Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB)
2026-04-18T02:38:02,325   Installing collected packages: setuptools, packaging, versioningit
2026-04-18T02:38:05,911     Creating /tmp/pip-build-env-f6h4ib0w/overlay/local/bin
2026-04-18T02:38:05,913     changing mode of /tmp/pip-build-env-f6h4ib0w/overlay/local/bin/versioningit to 755
2026-04-18T02:38:05,936   Successfully installed packaging-26.1 setuptools-82.0.1 versioningit-2.3.0
2026-04-18T02:38:06,217   Installing build dependencies: finished with status 'done'
2026-04-18T02:38:06,224   Getting requirements to build wheel: started
2026-04-18T02:38:06,225   Running command Getting requirements to build wheel
2026-04-18T02:38:06,878   /tmp/pip-build-env-f6h4ib0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-18T02:38:06,878   !!

2026-04-18T02:38:06,879           ********************************************************************************
2026-04-18T02:38:06,880           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-18T02:38:06,881           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-18T02:38:06,881           or your builds will no longer be supported.

2026-04-18T02:38:06,883           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-18T02:38:06,883           ********************************************************************************

2026-04-18T02:38:06,884   !!
2026-04-18T02:38:06,885     corresp(dist, value, root_dir)
2026-04-18T02:38:06,966   running egg_info
2026-04-18T02:38:06,973   writing protfasta.egg-info/PKG-INFO
2026-04-18T02:38:06,976   writing dependency_links to protfasta.egg-info/dependency_links.txt
2026-04-18T02:38:06,978   writing entry points to protfasta.egg-info/entry_points.txt
2026-04-18T02:38:06,980   writing requirements to protfasta.egg-info/requires.txt
2026-04-18T02:38:06,981   writing top-level names to protfasta.egg-info/top_level.txt
2026-04-18T02:38:07,010   reading manifest file 'protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:07,014   reading manifest template 'MANIFEST.in'
2026-04-18T02:38:07,018   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-04-18T02:38:07,019   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-04-18T02:38:07,020   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-04-18T02:38:07,020   adding license file 'LICENSE'
2026-04-18T02:38:07,024   writing manifest file 'protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:07,124   Getting requirements to build wheel: finished with status 'done'
2026-04-18T02:38:07,128   Created temporary directory: /tmp/pip-modern-metadata-oryny53h
2026-04-18T02:38:07,130   Preparing metadata (pyproject.toml): started
2026-04-18T02:38:07,131   Running command Preparing metadata (pyproject.toml)
2026-04-18T02:38:07,733   /tmp/pip-build-env-f6h4ib0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-18T02:38:07,733   !!

2026-04-18T02:38:07,734           ********************************************************************************
2026-04-18T02:38:07,735           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-18T02:38:07,736           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-18T02:38:07,737           or your builds will no longer be supported.

2026-04-18T02:38:07,738           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-18T02:38:07,738           ********************************************************************************

2026-04-18T02:38:07,739   !!
2026-04-18T02:38:07,739     corresp(dist, value, root_dir)
2026-04-18T02:38:07,816   running dist_info
2026-04-18T02:38:07,829   creating /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info
2026-04-18T02:38:07,830   writing /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/PKG-INFO
2026-04-18T02:38:07,834   writing dependency_links to /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/dependency_links.txt
2026-04-18T02:38:07,836   writing entry points to /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/entry_points.txt
2026-04-18T02:38:07,838   writing requirements to /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/requires.txt
2026-04-18T02:38:07,839   writing top-level names to /tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/top_level.txt
2026-04-18T02:38:07,840   writing manifest file '/tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:07,865   reading manifest file '/tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:07,867   reading manifest template 'MANIFEST.in'
2026-04-18T02:38:07,871   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-04-18T02:38:07,872   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-04-18T02:38:07,872   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-04-18T02:38:07,873   adding license file 'LICENSE'
2026-04-18T02:38:07,876   writing manifest file '/tmp/pip-modern-metadata-oryny53h/protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:07,877   creating '/tmp/pip-modern-metadata-oryny53h/protfasta-0.1.18.dist-info'
2026-04-18T02:38:08,007   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-18T02:38:08,012   Source in /tmp/pip-wheel-yftj7xda/protfasta_848eb9ff290749229a7c3cdf06679ff7 has version 0.1.18, which satisfies requirement protfasta==0.1.18 from https://files.pythonhosted.org/packages/62/1d/c76ef9ea542b853888a3c5c84bec7e5b87ba3cf586299cdef4727bf02f0d/protfasta-0.1.18.tar.gz
2026-04-18T02:38:08,013   Removed protfasta==0.1.18 from https://files.pythonhosted.org/packages/62/1d/c76ef9ea542b853888a3c5c84bec7e5b87ba3cf586299cdef4727bf02f0d/protfasta-0.1.18.tar.gz from build tracker '/tmp/pip-build-tracker-t5sbrwma'
2026-04-18T02:38:08,019 Created temporary directory: /tmp/pip-unpack-91hujrux
2026-04-18T02:38:08,019 Building wheels for collected packages: protfasta
2026-04-18T02:38:08,024   Created temporary directory: /tmp/pip-wheel-4vnbkqgj
2026-04-18T02:38:08,024   Destination directory: /tmp/pip-wheel-4vnbkqgj
2026-04-18T02:38:08,027   Building wheel for protfasta (pyproject.toml): started
2026-04-18T02:38:08,028   Running command Building wheel for protfasta (pyproject.toml)
2026-04-18T02:38:08,623   /tmp/pip-build-env-f6h4ib0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2026-04-18T02:38:08,624   !!

2026-04-18T02:38:08,625           ********************************************************************************
2026-04-18T02:38:08,625           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2026-04-18T02:38:08,626           By 2027-Feb-18, you need to update your project and remove deprecated calls
2026-04-18T02:38:08,627           or your builds will no longer be supported.

2026-04-18T02:38:08,629           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-18T02:38:08,629           ********************************************************************************

2026-04-18T02:38:08,630   !!
2026-04-18T02:38:08,630     corresp(dist, value, root_dir)
2026-04-18T02:38:08,698   running bdist_wheel
2026-04-18T02:38:08,719   running build
2026-04-18T02:38:08,719   running build_py
2026-04-18T02:38:08,726   creating build/lib/protfasta
2026-04-18T02:38:08,728   copying protfasta/io.py -> build/lib/protfasta
2026-04-18T02:38:08,730   copying protfasta/utilities.py -> build/lib/protfasta
2026-04-18T02:38:08,733   copying protfasta/__init__.py -> build/lib/protfasta
2026-04-18T02:38:08,735   copying protfasta/protfasta_exceptions.py -> build/lib/protfasta
2026-04-18T02:38:08,737   copying protfasta/_version.py -> build/lib/protfasta
2026-04-18T02:38:08,739   copying protfasta/_configs.py -> build/lib/protfasta
2026-04-18T02:38:08,740   copying protfasta/protfasta.py -> build/lib/protfasta
2026-04-18T02:38:08,743   creating build/lib/protfasta/scripts
2026-04-18T02:38:08,744   copying protfasta/scripts/pfasta.py -> build/lib/protfasta/scripts
2026-04-18T02:38:08,746   copying protfasta/scripts/__init__.py -> build/lib/protfasta/scripts
2026-04-18T02:38:08,749   creating build/lib/protfasta/tests
2026-04-18T02:38:08,750   copying protfasta/tests/test_protfasta.py -> build/lib/protfasta/tests
2026-04-18T02:38:08,753   copying protfasta/tests/__init__.py -> build/lib/protfasta/tests
2026-04-18T02:38:08,755   copying protfasta/tests/test_pfasta_cli.py -> build/lib/protfasta/tests
2026-04-18T02:38:08,757   copying protfasta/tests/conftest.py -> build/lib/protfasta/tests
2026-04-18T02:38:08,760   running egg_info
2026-04-18T02:38:08,771   writing protfasta.egg-info/PKG-INFO
2026-04-18T02:38:08,775   writing dependency_links to protfasta.egg-info/dependency_links.txt
2026-04-18T02:38:08,776   writing entry points to protfasta.egg-info/entry_points.txt
2026-04-18T02:38:08,778   writing requirements to protfasta.egg-info/requires.txt
2026-04-18T02:38:08,779   writing top-level names to protfasta.egg-info/top_level.txt
2026-04-18T02:38:08,792   reading manifest file 'protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:08,796   reading manifest template 'MANIFEST.in'
2026-04-18T02:38:08,800   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2026-04-18T02:38:08,801   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2026-04-18T02:38:08,801   warning: no previously-included files matching '*.so' found anywhere in distribution
2026-04-18T02:38:08,802   adding license file 'LICENSE'
2026-04-18T02:38:08,806   writing manifest file 'protfasta.egg-info/SOURCES.txt'
2026-04-18T02:38:08,812   creating build/lib/protfasta/data
2026-04-18T02:38:08,813   copying protfasta/data/README.md -> build/lib/protfasta/data
2026-04-18T02:38:08,815   copying protfasta/data/look_and_say.dat -> build/lib/protfasta/data
2026-04-18T02:38:08,817   creating build/lib/protfasta/data/test_data
2026-04-18T02:38:08,818   copying protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,820   copying protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,822   copying protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,824   copying protfasta/data/test_data/fixable_invalid.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,826   copying protfasta/data/test_data/test_data_with_bad_chars.fa -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,828   copying protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,830   copying protfasta/data/test_data/testset_1.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,833   copying protfasta/data/test_data/testset_duplicate.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,835   copying protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,837   copying protfasta/data/test_data/unfixable_invalid.fasta -> build/lib/protfasta/data/test_data
2026-04-18T02:38:08,839   creating build/lib/protfasta/tests/outdata
2026-04-18T02:38:08,840   copying protfasta/tests/outdata/readme.md -> build/lib/protfasta/tests/outdata
2026-04-18T02:38:08,842   copying protfasta/tests/outdata/test_out_1.fasta -> build/lib/protfasta/tests/outdata
2026-04-18T02:38:08,844   copying protfasta/tests/outdata/test_out_2.fasta -> build/lib/protfasta/tests/outdata
2026-04-18T02:38:08,846   creating build/lib/protfasta/tests/pfasta_test
2026-04-18T02:38:08,847   copying protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/lib/protfasta/tests/pfasta_test
2026-04-18T02:38:08,851   copying protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/lib/protfasta/tests/pfasta_test
2026-04-18T02:38:08,854   copying protfasta/tests/pfasta_test/input_test.fasta -> build/lib/protfasta/tests/pfasta_test
2026-04-18T02:38:08,856   copying protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/lib/protfasta/tests/pfasta_test
2026-04-18T02:38:08,871   installing to build/bdist.linux-armv7l/wheel
2026-04-18T02:38:08,872   running install
2026-04-18T02:38:08,894   running install_lib
2026-04-18T02:38:08,901   creating build/bdist.linux-armv7l/wheel
2026-04-18T02:38:08,903   creating build/bdist.linux-armv7l/wheel/protfasta
2026-04-18T02:38:08,904   copying build/lib/protfasta/io.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,906   copying build/lib/protfasta/utilities.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,910   creating build/bdist.linux-armv7l/wheel/protfasta/scripts
2026-04-18T02:38:08,911   copying build/lib/protfasta/scripts/pfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta/scripts
2026-04-18T02:38:08,913   copying build/lib/protfasta/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta/scripts
2026-04-18T02:38:08,915   copying build/lib/protfasta/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,918   creating build/bdist.linux-armv7l/wheel/protfasta/data
2026-04-18T02:38:08,919   creating build/bdist.linux-armv7l/wheel/protfasta/data/test_data
2026-04-18T02:38:08,921   copying build/lib/protfasta/data/test_data/unfixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,923   copying build/lib/protfasta/data/test_data/test_data_with_bad_chars.fa -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,924   copying build/lib/protfasta/data/test_data/fixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,926   copying build/lib/protfasta/data/test_data/testset_1.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,928   copying build/lib/protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,930   copying build/lib/protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,932   copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,934   copying build/lib/protfasta/data/test_data/testset_duplicate.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,936   copying build/lib/protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,938   copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data
2026-04-18T02:38:08,939   copying build/lib/protfasta/data/look_and_say.dat -> build/bdist.linux-armv7l/wheel/./protfasta/data
2026-04-18T02:38:08,941   copying build/lib/protfasta/data/README.md -> build/bdist.linux-armv7l/wheel/./protfasta/data
2026-04-18T02:38:08,943   copying build/lib/protfasta/protfasta_exceptions.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,945   creating build/bdist.linux-armv7l/wheel/protfasta/tests
2026-04-18T02:38:08,946   copying build/lib/protfasta/tests/test_protfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests
2026-04-18T02:38:08,950   creating build/bdist.linux-armv7l/wheel/protfasta/tests/outdata
2026-04-18T02:38:08,951   copying build/lib/protfasta/tests/outdata/test_out_2.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata
2026-04-18T02:38:08,953   copying build/lib/protfasta/tests/outdata/readme.md -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata
2026-04-18T02:38:08,955   copying build/lib/protfasta/tests/outdata/test_out_1.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata
2026-04-18T02:38:08,958   creating build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test
2026-04-18T02:38:08,959   copying build/lib/protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test
2026-04-18T02:38:08,961   copying build/lib/protfasta/tests/pfasta_test/input_test.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test
2026-04-18T02:38:08,963   copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test
2026-04-18T02:38:08,967   copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test
2026-04-18T02:38:08,970   copying build/lib/protfasta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests
2026-04-18T02:38:08,972   copying build/lib/protfasta/tests/test_pfasta_cli.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests
2026-04-18T02:38:08,975   copying build/lib/protfasta/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests
2026-04-18T02:38:08,976   copying build/lib/protfasta/_version.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,978   copying build/lib/protfasta/_configs.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,980   copying build/lib/protfasta/protfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta
2026-04-18T02:38:08,982   running install_egg_info
2026-04-18T02:38:08,988   Copying protfasta.egg-info to build/bdist.linux-armv7l/wheel/./protfasta-0.1.18-py3.11.egg-info
2026-04-18T02:38:09,002   running install_scripts
2026-04-18T02:38:09,014   creating build/bdist.linux-armv7l/wheel/protfasta-0.1.18.dist-info/WHEEL
2026-04-18T02:38:09,016   creating '/tmp/pip-wheel-4vnbkqgj/.tmp-byf8q4c5/protfasta-0.1.18-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-18T02:38:09,020   adding 'protfasta/__init__.py'
2026-04-18T02:38:09,021   adding 'protfasta/_configs.py'
2026-04-18T02:38:09,022   adding 'protfasta/_version.py'
2026-04-18T02:38:09,025   adding 'protfasta/io.py'
2026-04-18T02:38:09,027   adding 'protfasta/protfasta.py'
2026-04-18T02:38:09,028   adding 'protfasta/protfasta_exceptions.py'
2026-04-18T02:38:09,030   adding 'protfasta/utilities.py'
2026-04-18T02:38:09,032   adding 'protfasta/data/README.md'
2026-04-18T02:38:09,034   adding 'protfasta/data/look_and_say.dat'
2026-04-18T02:38:09,035   adding 'protfasta/data/test_data/aligned_seq_all_valid.fasta'
2026-04-18T02:38:09,037   adding 'protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta'
2026-04-18T02:38:09,038   adding 'protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta'
2026-04-18T02:38:09,039   adding 'protfasta/data/test_data/fixable_invalid.fasta'
2026-04-18T02:38:09,041   adding 'protfasta/data/test_data/test_data_with_bad_chars.fa'
2026-04-18T02:38:09,042   adding 'protfasta/data/test_data/test_data_with_nonstandard_chars.fa'
2026-04-18T02:38:09,044   adding 'protfasta/data/test_data/testset_1.fasta'
2026-04-18T02:38:09,045   adding 'protfasta/data/test_data/testset_duplicate.fasta'
2026-04-18T02:38:09,046   adding 'protfasta/data/test_data/testset_duplicate_seqs.fasta'
2026-04-18T02:38:09,047   adding 'protfasta/data/test_data/unfixable_invalid.fasta'
2026-04-18T02:38:09,049   adding 'protfasta/scripts/__init__.py'
2026-04-18T02:38:09,051   adding 'protfasta/scripts/pfasta.py'
2026-04-18T02:38:09,053   adding 'protfasta/tests/__init__.py'
2026-04-18T02:38:09,054   adding 'protfasta/tests/conftest.py'
2026-04-18T02:38:09,055   adding 'protfasta/tests/test_pfasta_cli.py'
2026-04-18T02:38:09,060   adding 'protfasta/tests/test_protfasta.py'
2026-04-18T02:38:09,062   adding 'protfasta/tests/outdata/readme.md'
2026-04-18T02:38:09,063   adding 'protfasta/tests/outdata/test_out_1.fasta'
2026-04-18T02:38:09,065   adding 'protfasta/tests/outdata/test_out_2.fasta'
2026-04-18T02:38:09,074   adding 'protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta'
2026-04-18T02:38:09,083   adding 'protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta'
2026-04-18T02:38:09,085   adding 'protfasta/tests/pfasta_test/input_test.fasta'
2026-04-18T02:38:09,086   adding 'protfasta/tests/pfasta_test/run_coverage_tests.sh'
2026-04-18T02:38:09,089   adding 'protfasta-0.1.18.dist-info/licenses/LICENSE'
2026-04-18T02:38:09,090   adding 'protfasta-0.1.18.dist-info/METADATA'
2026-04-18T02:38:09,091   adding 'protfasta-0.1.18.dist-info/WHEEL'
2026-04-18T02:38:09,092   adding 'protfasta-0.1.18.dist-info/entry_points.txt'
2026-04-18T02:38:09,093   adding 'protfasta-0.1.18.dist-info/top_level.txt'
2026-04-18T02:38:09,094   adding 'protfasta-0.1.18.dist-info/RECORD'
2026-04-18T02:38:09,097   removing build/bdist.linux-armv7l/wheel
2026-04-18T02:38:09,210   Building wheel for protfasta (pyproject.toml): finished with status 'done'
2026-04-18T02:38:09,217   Created wheel for protfasta: filename=protfasta-0.1.18-py3-none-any.whl size=132729 sha256=b57f7b4ff81094312884da9da1bbb955bc31cfeaec96b4e85100a155ce893d25
2026-04-18T02:38:09,218   Stored in directory: /tmp/pip-ephem-wheel-cache-5bmdbjn9/wheels/f3/ab/0e/93c59f18b2ebb8077a57cfcddea7080de9aea58bbe9c7947c1
2026-04-18T02:38:09,229 Successfully built protfasta
2026-04-18T02:38:09,236 Removed build tracker: '/tmp/pip-build-tracker-t5sbrwma'