2026-04-19T00:17:34,054 Created temporary directory: /tmp/pip-ephem-wheel-cache-2udiolj5 2026-04-19T00:17:34,055 Created temporary directory: /tmp/pip-build-tracker-tf_8q8yk 2026-04-19T00:17:34,056 Initialized build tracking at /tmp/pip-build-tracker-tf_8q8yk 2026-04-19T00:17:34,056 Created build tracker: /tmp/pip-build-tracker-tf_8q8yk 2026-04-19T00:17:34,057 Entered build tracker: /tmp/pip-build-tracker-tf_8q8yk 2026-04-19T00:17:34,058 Created temporary directory: /tmp/pip-wheel-7pta1ykw 2026-04-19T00:17:34,060 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-19T00:17:34,063 Created temporary directory: /tmp/pip-ephem-wheel-cache-2mqptt13 2026-04-19T00:17:34,085 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-19T00:17:34,088 2 location(s) to search for versions of pirlygenes: 2026-04-19T00:17:34,088 * https://pypi.org/simple/pirlygenes/ 2026-04-19T00:17:34,088 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T00:17:34,089 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-19T00:17:34,090 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-19T00:17:34,091 Found index url https://pypi.org/simple 2026-04-19T00:17:34,345 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-19T00:17:34,377 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,378 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-19T00:17:34,379 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,380 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-19T00:17:34,380 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,381 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-19T00:17:34,382 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,383 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from 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https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-19T00:17:34,387 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,388 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-19T00:17:34,389 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from 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2026-04-19T00:17:34,396 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,397 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-19T00:17:34,397 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,398 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-19T00:17:34,402 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,403 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-19T00:17:34,404 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,405 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-19T00:17:34,405 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,406 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-19T00:17:34,407 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,408 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-19T00:17:34,409 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,410 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-19T00:17:34,411 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,412 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-19T00:17:34,412 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,413 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-19T00:17:34,417 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,418 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-19T00:17:34,419 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/2d/32/ae5d07cd0323b174e415673c6fb15c2ee138829685288a40316ff614cdd2/pirlygenes-4.9.12-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,527 Found link https://files.pythonhosted.org/packages/e5/de/7363c659de1b92edce1c555b29ac2132c5a7809652301e78ac83f46707e6/pirlygenes-4.9.12.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.9.12 2026-04-19T00:17:34,528 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T00:17:34,529 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T00:17:34,530 Found index url https://www.piwheels.org/simple 2026-04-19T00:17:34,723 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-19T00:17:34,752 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.9.11-py3-none-any.whl#sha256=7c9fe83c15930af4a22d85064bd5e800f2a9557610545b7bb31df0dfc05c9a2d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,753 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.9.10-py3-none-any.whl#sha256=588b9690eba784b54c121ad6b36982684c717f9f5b63431c08911b85d85e54e2 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,754 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.9.9-py3-none-any.whl#sha256=ae3ca8b48d8cc2db3d697448c110a9368b834137a57cd94086f9dcb1cd37f2c3 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,754 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.15.1-py3-none-any.whl#sha256=382099ae42ae099e6ee19d47847dded6aa7dea10ddfc457f0d9072be76024b70 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,781 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.15.0-py3-none-any.whl#sha256=49824052e155ec70ad9ac304e03076602cd05f7e3179093a90896576cae978df (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,782 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.14.1-py3-none-any.whl#sha256=062d277a87b1b983d7ba8e6dc670194e6000ec37acd07f00b04d3e99adbc17cc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,782 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.9.0-py3-none-any.whl#sha256=8a5d019750603a574ab513958ccda679a3fb9bc3fc5e0bf9ee3a4ab981ce11cd (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,785 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.8.0-py3-none-any.whl#sha256=8647e92b624b8f8e566be6ac2fe3db4da2c918e4b50e72f19c44ef7091244be9 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,785 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.7.0-py3-none-any.whl#sha256=314bf8c48fa380a0f57c6db57a0cc51ff515eb8bcbe76f35efcd288708c8db22 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,786 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.6.0-py3-none-any.whl#sha256=102d759271fe20631692f659a53b89532340331dd43449ebd9b2ecb9b1227904 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,786 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.5.0-py3-none-any.whl#sha256=ed66b0d6ee8bce3057a9eee4e3479cb013f235ada0d0b65385f2b9c28d03bf78 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,787 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.4.0-py3-none-any.whl#sha256=3163d9bc66fc382f57d04c43c6e1aa6686b86b6149cc0d0950943eae1713f354 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,788 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.3.0-py3-none-any.whl#sha256=63aa8303d4a13748d514a39bb8efe52dc60565cff43ad06dd76a653967ccb33a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,788 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.2.0-py3-none-any.whl#sha256=85fead9c44e027431aae1b82b31093d2cb7006e21cd01d33b7445eb8c9948f40 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,789 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.1.0-py3-none-any.whl#sha256=4251fa90f4f8fb242c184fedde61659c34349d8fc56ee826de4488e5c5c11039 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,789 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.0.0-py3-none-any.whl#sha256=40b6b1094f878a48f7ccf12418b061fe33d3a8fd773093523159c983af518352 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,790 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.14.0-py3-none-any.whl#sha256=057ce48582bffd44e37684068b1e64e750349609703d93d80efa875cb9b00d12 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,791 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.13.0-py3-none-any.whl#sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,791 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,792 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,792 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.10.0-py3-none-any.whl#sha256=393a743c2c0abdcbb8f787acfe60892c2335aa4a6be80038396dc5b27473274c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,793 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.9.0-py3-none-any.whl#sha256=ca97e53c115bc9d06958ccce0494c60d942faba3dd044564ca15284523b8ec19 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,793 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.1-py3-none-any.whl#sha256=1b346af13b190e47650615724130b80dc1044b25269d3603013a7436e13f4ab6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,794 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,794 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,795 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,796 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,796 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,797 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,797 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.0-py3-none-any.whl#sha256=7ed846a4e0950617d0103bb8a51b54f0f00bfa982caa83c9013067f52251e39e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,798 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.2-py3-none-any.whl#sha256=25793e34918b22dc36562123fdf4e753df72f9cc712aa69c1f151b96a09ab68a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,799 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,799 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,800 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,800 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,801 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,801 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,802 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,802 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,803 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,804 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,804 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,805 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,805 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,806 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T00:17:34,807 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T00:17:34,807 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-19T00:17:34,838 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-19T00:17:34,858 Collecting pirlygenes==4.9.12 2026-04-19T00:17:34,861 Created temporary directory: /tmp/pip-unpack-oww6x0zv 2026-04-19T00:17:35,104 Downloading pirlygenes-4.9.12.tar.gz (7.5 MB) 2026-04-19T00:17:37,178 Added pirlygenes==4.9.12 from https://files.pythonhosted.org/packages/e5/de/7363c659de1b92edce1c555b29ac2132c5a7809652301e78ac83f46707e6/pirlygenes-4.9.12.tar.gz to build tracker '/tmp/pip-build-tracker-tf_8q8yk' 2026-04-19T00:17:37,186 Created temporary directory: /tmp/pip-build-env-m6u3bef9 2026-04-19T00:17:37,192 Installing build dependencies: started 2026-04-19T00:17:37,193 Running command pip subprocess to install build dependencies 2026-04-19T00:17:38,339 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-19T00:17:38,785 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-19T00:17:38,808 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-19T00:17:40,582 Collecting setuptools>=60 2026-04-19T00:17:40,681 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-19T00:17:41,068 Collecting setuptools-scm>=8.0 2026-04-19T00:17:41,084 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-19T00:17:41,167 Collecting vcs-versioning>=1.0.0.dev0 2026-04-19T00:17:41,184 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-19T00:17:41,369 Collecting packaging>=20 2026-04-19T00:17:41,388 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-19T00:17:44,408 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-19T00:17:48,077 Creating /tmp/pip-build-env-m6u3bef9/overlay/local/bin 2026-04-19T00:17:48,079 changing mode of /tmp/pip-build-env-m6u3bef9/overlay/local/bin/vcs-versioning to 755 2026-04-19T00:17:48,193 changing mode of /tmp/pip-build-env-m6u3bef9/overlay/local/bin/setuptools-scm to 755 2026-04-19T00:17:48,222 Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-19T00:17:48,507 Installing build dependencies: finished with status 'done' 2026-04-19T00:17:48,523 Getting requirements to build wheel: started 2026-04-19T00:17:48,524 Running command Getting requirements to build wheel 2026-04-19T00:17:49,193 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T00:17:49,306 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:49,307 !! 2026-04-19T00:17:49,311 ******************************************************************************** 2026-04-19T00:17:49,311 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:49,312 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:49,313 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:49,314 ******************************************************************************** 2026-04-19T00:17:49,314 !! 2026-04-19T00:17:49,315 dist._finalize_license_expression() 2026-04-19T00:17:49,315 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:49,316 !! 2026-04-19T00:17:49,317 ******************************************************************************** 2026-04-19T00:17:49,317 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:49,318 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:49,319 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:49,320 ******************************************************************************** 2026-04-19T00:17:49,321 !! 2026-04-19T00:17:49,321 self._finalize_license_expression() 2026-04-19T00:17:49,322 running egg_info 2026-04-19T00:17:49,330 writing pirlygenes.egg-info/PKG-INFO 2026-04-19T00:17:49,336 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-19T00:17:49,338 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-19T00:17:49,340 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-19T00:17:49,342 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-19T00:17:49,387 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T00:17:49,387 return get_active_overrides().subprocess_timeout 2026-04-19T00:17:49,395 listing git files failed - pretending there aren't any 2026-04-19T00:17:49,405 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:49,418 adding license file 'LICENSE' 2026-04-19T00:17:49,426 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:49,531 Getting requirements to build wheel: finished with status 'done' 2026-04-19T00:17:49,534 Created temporary directory: /tmp/pip-modern-metadata-amtk1rie 2026-04-19T00:17:49,537 Preparing metadata (pyproject.toml): started 2026-04-19T00:17:49,538 Running command Preparing metadata (pyproject.toml) 2026-04-19T00:17:50,143 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T00:17:50,251 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:50,252 !! 2026-04-19T00:17:50,253 ******************************************************************************** 2026-04-19T00:17:50,254 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:50,255 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:50,256 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:50,257 ******************************************************************************** 2026-04-19T00:17:50,258 !! 2026-04-19T00:17:50,259 dist._finalize_license_expression() 2026-04-19T00:17:50,259 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:50,260 !! 2026-04-19T00:17:50,261 ******************************************************************************** 2026-04-19T00:17:50,261 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:50,262 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:50,263 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:50,263 ******************************************************************************** 2026-04-19T00:17:50,264 !! 2026-04-19T00:17:50,265 self._finalize_license_expression() 2026-04-19T00:17:50,265 running dist_info 2026-04-19T00:17:50,281 creating /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info 2026-04-19T00:17:50,282 writing /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/PKG-INFO 2026-04-19T00:17:50,287 writing dependency_links to /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/dependency_links.txt 2026-04-19T00:17:50,289 writing entry points to /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/entry_points.txt 2026-04-19T00:17:50,291 writing requirements to /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/requires.txt 2026-04-19T00:17:50,292 writing top-level names to /tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/top_level.txt 2026-04-19T00:17:50,294 writing manifest file '/tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:50,334 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T00:17:50,335 return get_active_overrides().subprocess_timeout 2026-04-19T00:17:50,341 listing git files failed - pretending there aren't any 2026-04-19T00:17:50,349 reading manifest file '/tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:50,351 adding license file 'LICENSE' 2026-04-19T00:17:50,356 writing manifest file '/tmp/pip-modern-metadata-amtk1rie/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:50,358 creating '/tmp/pip-modern-metadata-amtk1rie/pirlygenes-4.9.12.dist-info' 2026-04-19T00:17:50,495 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-19T00:17:50,502 Source in /tmp/pip-wheel-7pta1ykw/pirlygenes_73257a607caa4e79b95a0e2fb5aec334 has version 4.9.12, which satisfies requirement pirlygenes==4.9.12 from https://files.pythonhosted.org/packages/e5/de/7363c659de1b92edce1c555b29ac2132c5a7809652301e78ac83f46707e6/pirlygenes-4.9.12.tar.gz 2026-04-19T00:17:50,503 Removed pirlygenes==4.9.12 from https://files.pythonhosted.org/packages/e5/de/7363c659de1b92edce1c555b29ac2132c5a7809652301e78ac83f46707e6/pirlygenes-4.9.12.tar.gz from build tracker '/tmp/pip-build-tracker-tf_8q8yk' 2026-04-19T00:17:50,512 Created temporary directory: /tmp/pip-unpack-0dts26gf 2026-04-19T00:17:50,513 Building wheels for collected packages: pirlygenes 2026-04-19T00:17:50,518 Created temporary directory: /tmp/pip-wheel-2iyqfnv1 2026-04-19T00:17:50,518 Destination directory: /tmp/pip-wheel-2iyqfnv1 2026-04-19T00:17:50,521 Building wheel for pirlygenes (pyproject.toml): started 2026-04-19T00:17:50,522 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-19T00:17:51,139 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T00:17:51,240 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:51,242 !! 2026-04-19T00:17:51,242 ******************************************************************************** 2026-04-19T00:17:51,243 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:51,244 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:51,245 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:51,245 ******************************************************************************** 2026-04-19T00:17:51,246 !! 2026-04-19T00:17:51,247 dist._finalize_license_expression() 2026-04-19T00:17:51,247 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T00:17:51,248 !! 2026-04-19T00:17:51,249 ******************************************************************************** 2026-04-19T00:17:51,249 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T00:17:51,250 License :: OSI Approved :: Apache Software License 2026-04-19T00:17:51,251 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T00:17:51,252 ******************************************************************************** 2026-04-19T00:17:51,253 !! 2026-04-19T00:17:51,253 self._finalize_license_expression() 2026-04-19T00:17:51,254 running bdist_wheel 2026-04-19T00:17:51,275 running build 2026-04-19T00:17:51,276 running build_py 2026-04-19T00:17:51,278 creating build/lib/pirlygenes 2026-04-19T00:17:51,280 copying pirlygenes/plot_embedding.py -> build/lib/pirlygenes 2026-04-19T00:17:51,284 copying pirlygenes/therapy_response.py -> build/lib/pirlygenes 2026-04-19T00:17:51,286 copying pirlygenes/plot_scatter.py -> build/lib/pirlygenes 2026-04-19T00:17:51,289 copying pirlygenes/plot_tumor_expr.py -> build/lib/pirlygenes 2026-04-19T00:17:51,293 copying pirlygenes/brief.py -> build/lib/pirlygenes 2026-04-19T00:17:51,295 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-19T00:17:51,298 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-19T00:17:51,301 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-19T00:17:51,303 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-19T00:17:51,305 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-19T00:17:51,307 copying pirlygenes/confidence.py -> build/lib/pirlygenes 2026-04-19T00:17:51,310 copying pirlygenes/plot_target_deep_dive.py -> build/lib/pirlygenes 2026-04-19T00:17:51,312 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-19T00:17:51,316 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-19T00:17:51,319 copying pirlygenes/sample_context.py -> build/lib/pirlygenes 2026-04-19T00:17:51,322 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-19T00:17:51,324 copying pirlygenes/provenance.py -> build/lib/pirlygenes 2026-04-19T00:17:51,327 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-19T00:17:51,329 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-19T00:17:51,330 copying pirlygenes/format.py -> build/lib/pirlygenes 2026-04-19T00:17:51,333 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-19T00:17:51,334 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-19T00:17:51,336 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-19T00:17:51,339 copying pirlygenes/plot_subtype_signature.py -> build/lib/pirlygenes 2026-04-19T00:17:51,342 copying pirlygenes/plot_therapy.py -> build/lib/pirlygenes 2026-04-19T00:17:51,345 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-19T00:17:51,347 copying pirlygenes/plot_strip.py -> build/lib/pirlygenes 2026-04-19T00:17:51,349 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-19T00:17:51,354 running egg_info 2026-04-19T00:17:51,368 writing pirlygenes.egg-info/PKG-INFO 2026-04-19T00:17:51,373 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-19T00:17:51,375 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-19T00:17:51,376 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-19T00:17:51,377 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-19T00:17:51,410 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T00:17:51,410 return get_active_overrides().subprocess_timeout 2026-04-19T00:17:51,417 listing git files failed - pretending there aren't any 2026-04-19T00:17:51,424 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:51,433 adding license file 'LICENSE' 2026-04-19T00:17:51,440 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T00:17:51,443 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-19T00:17:51,444 !! 2026-04-19T00:17:51,445 ******************************************************************************** 2026-04-19T00:17:51,445 ############################ 2026-04-19T00:17:51,446 # Package would be ignored # 2026-04-19T00:17:51,447 ############################ 2026-04-19T00:17:51,447 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-19T00:17:51,448 but it is absent from setuptools' `packages` configuration. 2026-04-19T00:17:51,449 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-19T00:17:51,450 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-19T00:17:51,450 to the `packages` configuration field. 2026-04-19T00:17:51,452 Alternatively, you can also rely on setuptools' discovery methods 2026-04-19T00:17:51,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-19T00:17:51,453 instead of `find_packages(...)`/`find:`). 2026-04-19T00:17:51,454 You can read more about "package discovery" on setuptools documentation page: 2026-04-19T00:17:51,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-19T00:17:51,457 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-19T00:17:51,457 already explicitly excluding 'pirlygenes.data' via 2026-04-19T00:17:51,458 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-19T00:17:51,458 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-19T00:17:51,459 combination with a more fine grained `package-data` configuration. 2026-04-19T00:17:51,461 You can read more about "package data files" on setuptools documentation page: 2026-04-19T00:17:51,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-19T00:17:51,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-19T00:17:51,464 even if it does not contain any `.py` files. 2026-04-19T00:17:51,465 On the other hand, currently there is no concept of package data 2026-04-19T00:17:51,465 directory, all directories are treated like packages. 2026-04-19T00:17:51,466 ******************************************************************************** 2026-04-19T00:17:51,467 !! 2026-04-19T00:17:51,467 check.warn(importable) 2026-04-19T00:17:51,468 /tmp/pip-build-env-m6u3bef9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-19T00:17:51,468 !! 2026-04-19T00:17:51,469 ******************************************************************************** 2026-04-19T00:17:51,470 ############################ 2026-04-19T00:17:51,470 # Package would be ignored # 2026-04-19T00:17:51,471 ############################ 2026-04-19T00:17:51,471 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-19T00:17:51,472 but it is absent from setuptools' `packages` configuration. 2026-04-19T00:17:51,472 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-19T00:17:51,473 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-19T00:17:51,473 to the `packages` configuration field. 2026-04-19T00:17:51,474 Alternatively, you can also rely on setuptools' discovery methods 2026-04-19T00:17:51,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-19T00:17:51,475 instead of `find_packages(...)`/`find:`). 2026-04-19T00:17:51,476 You can read more about "package discovery" on setuptools documentation page: 2026-04-19T00:17:51,477 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-19T00:17:51,478 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-19T00:17:51,479 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-19T00:17:51,479 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-19T00:17:51,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-19T00:17:51,480 combination with a more fine grained `package-data` configuration. 2026-04-19T00:17:51,481 You can read more about "package data files" on setuptools documentation page: 2026-04-19T00:17:51,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-19T00:17:51,484 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-19T00:17:51,484 even if it does not contain any `.py` files. 2026-04-19T00:17:51,485 On the other hand, currently there is no concept of package data 2026-04-19T00:17:51,486 directory, all directories are treated like packages. 2026-04-19T00:17:51,486 ******************************************************************************** 2026-04-19T00:17:51,487 !! 2026-04-19T00:17:51,488 check.warn(importable) 2026-04-19T00:17:51,488 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-19T00:17:51,489 creating build/lib/pirlygenes/data 2026-04-19T00:17:51,489 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,490 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,490 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,491 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,491 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,492 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,492 copying pirlygenes/data/artifact-expectations.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,493 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,494 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,494 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,495 copying pirlygenes/data/cancer-family-panels.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,495 copying pirlygenes/data/cancer-key-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,499 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,502 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,506 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,509 copying pirlygenes/data/culture-stress-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,511 copying pirlygenes/data/degradation-gene-pairs.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,513 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,516 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,519 copying pirlygenes/data/extra-tx-mappings.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,521 copying pirlygenes/data/ffpe-sensitive-markers.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,523 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,526 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,528 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,643 copying pirlygenes/data/lineage-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,645 copying pirlygenes/data/mitochondrial-genes.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,647 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,650 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,808 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,810 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,818 copying pirlygenes/data/therapy-response-signatures.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,820 copying pirlygenes/data/tme-markers.csv -> build/lib/pirlygenes/data 2026-04-19T00:17:51,822 creating build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,823 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,826 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,829 copying pirlygenes/decomposition/panels.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,832 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,835 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,838 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-19T00:17:51,856 installing to build/bdist.linux-armv7l/wheel 2026-04-19T00:17:51,857 running install 2026-04-19T00:17:51,881 running install_lib 2026-04-19T00:17:51,889 creating build/bdist.linux-armv7l/wheel 2026-04-19T00:17:51,891 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-19T00:17:51,892 copying build/lib/pirlygenes/plot_embedding.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,896 copying build/lib/pirlygenes/therapy_response.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,898 copying build/lib/pirlygenes/plot_scatter.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,901 copying build/lib/pirlygenes/plot_tumor_expr.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,904 copying build/lib/pirlygenes/brief.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,907 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,910 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,912 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,914 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,916 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,918 copying build/lib/pirlygenes/confidence.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,921 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,923 copying build/lib/pirlygenes/plot_target_deep_dive.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,925 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,929 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,932 copying build/lib/pirlygenes/sample_context.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,935 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,938 copying build/lib/pirlygenes/provenance.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,940 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,942 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,943 copying build/lib/pirlygenes/format.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:51,946 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-19T00:17:51,947 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,950 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,953 copying build/lib/pirlygenes/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,955 copying build/lib/pirlygenes/data/lineage-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,957 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,959 copying build/lib/pirlygenes/data/cancer-family-panels.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,961 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,964 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,967 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,974 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,975 copying build/lib/pirlygenes/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,979 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,980 copying build/lib/pirlygenes/data/culture-stress-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,982 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,984 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,986 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:51,989 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,174 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,177 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,179 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,183 copying build/lib/pirlygenes/data/therapy-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,185 copying build/lib/pirlygenes/data/degradation-gene-pairs.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,187 copying build/lib/pirlygenes/data/artifact-expectations.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,188 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,304 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,306 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,308 copying build/lib/pirlygenes/data/tme-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,310 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,312 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,314 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,317 copying build/lib/pirlygenes/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,319 copying build/lib/pirlygenes/data/ffpe-sensitive-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T00:17:52,321 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,323 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,325 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,327 copying build/lib/pirlygenes/plot_subtype_signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,330 copying build/lib/pirlygenes/plot_therapy.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,333 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,335 copying build/lib/pirlygenes/plot_strip.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,337 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-19T00:17:52,338 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,341 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,343 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,346 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,348 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,351 copying build/lib/pirlygenes/decomposition/panels.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T00:17:52,354 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T00:17:52,359 running install_egg_info 2026-04-19T00:17:52,366 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-4.9.12-py3.11.egg-info 2026-04-19T00:17:52,378 running install_scripts 2026-04-19T00:17:52,391 creating build/bdist.linux-armv7l/wheel/pirlygenes-4.9.12.dist-info/WHEEL 2026-04-19T00:17:52,394 creating '/tmp/pip-wheel-2iyqfnv1/.tmp-66zv3pcu/pirlygenes-4.9.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-19T00:17:52,397 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-19T00:17:52,398 adding 'pirlygenes/__init__.py' 2026-04-19T00:17:52,400 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-19T00:17:52,403 adding 'pirlygenes/brief.py' 2026-04-19T00:17:52,422 adding 'pirlygenes/cli.py' 2026-04-19T00:17:52,425 adding 'pirlygenes/common.py' 2026-04-19T00:17:52,426 adding 'pirlygenes/confidence.py' 2026-04-19T00:17:52,428 adding 'pirlygenes/format.py' 2026-04-19T00:17:52,430 adding 'pirlygenes/gene_ids.py' 2026-04-19T00:17:52,431 adding 'pirlygenes/gene_names.py' 2026-04-19T00:17:52,437 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-19T00:17:52,439 adding 'pirlygenes/load_dataset.py' 2026-04-19T00:17:52,444 adding 'pirlygenes/load_expression.py' 2026-04-19T00:17:52,446 adding 'pirlygenes/plot.py' 2026-04-19T00:17:52,448 adding 'pirlygenes/plot_data_helpers.py' 2026-04-19T00:17:52,456 adding 'pirlygenes/plot_embedding.py' 2026-04-19T00:17:52,459 adding 'pirlygenes/plot_scatter.py' 2026-04-19T00:17:52,461 adding 'pirlygenes/plot_strip.py' 2026-04-19T00:17:52,464 adding 'pirlygenes/plot_subtype_signature.py' 2026-04-19T00:17:52,467 adding 'pirlygenes/plot_target_deep_dive.py' 2026-04-19T00:17:52,473 adding 'pirlygenes/plot_therapy.py' 2026-04-19T00:17:52,482 adding 'pirlygenes/plot_tumor_expr.py' 2026-04-19T00:17:52,485 adding 'pirlygenes/provenance.py' 2026-04-19T00:17:52,492 adding 'pirlygenes/sample_context.py' 2026-04-19T00:17:52,495 adding 'pirlygenes/sample_quality.py' 2026-04-19T00:17:52,497 adding 'pirlygenes/therapy_response.py' 2026-04-19T00:17:52,499 adding 'pirlygenes/transcript_to_gene.py' 2026-04-19T00:17:52,512 adding 'pirlygenes/tumor_purity.py' 2026-04-19T00:17:52,513 adding 'pirlygenes/version.py' 2026-04-19T00:17:52,516 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-19T00:17:52,520 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-19T00:17:52,522 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-19T00:17:52,523 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-19T00:17:52,524 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-19T00:17:52,528 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-19T00:17:52,529 adding 'pirlygenes/data/artifact-expectations.csv' 2026-04-19T00:17:52,531 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-19T00:17:52,535 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-19T00:17:52,538 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-19T00:17:52,540 adding 'pirlygenes/data/cancer-family-panels.csv' 2026-04-19T00:17:52,547 adding 'pirlygenes/data/cancer-key-genes.csv' 2026-04-19T00:17:52,549 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-19T00:17:52,556 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-19T00:17:52,559 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-19T00:17:52,560 adding 'pirlygenes/data/culture-stress-genes.csv' 2026-04-19T00:17:52,562 adding 'pirlygenes/data/degradation-gene-pairs.csv' 2026-04-19T00:17:52,564 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-19T00:17:52,566 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-19T00:17:52,567 adding 'pirlygenes/data/extra-tx-mappings.csv' 2026-04-19T00:17:52,569 adding 'pirlygenes/data/ffpe-sensitive-markers.csv' 2026-04-19T00:17:52,570 adding 'pirlygenes/data/gene-sets.csv' 2026-04-19T00:17:52,571 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-19T00:17:55,252 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-19T00:17:55,301 adding 'pirlygenes/data/lineage-genes.csv' 2026-04-19T00:17:55,303 adding 'pirlygenes/data/mitochondrial-genes.csv' 2026-04-19T00:17:55,305 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-19T00:17:58,482 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-19T00:17:58,555 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-19T00:17:58,578 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-19T00:17:58,582 adding 'pirlygenes/data/therapy-response-signatures.csv' 2026-04-19T00:17:58,584 adding 'pirlygenes/data/tme-markers.csv' 2026-04-19T00:17:58,586 adding 'pirlygenes/decomposition/__init__.py' 2026-04-19T00:17:58,591 adding 'pirlygenes/decomposition/engine.py' 2026-04-19T00:17:58,594 adding 'pirlygenes/decomposition/panels.py' 2026-04-19T00:17:58,598 adding 'pirlygenes/decomposition/plot.py' 2026-04-19T00:17:58,600 adding 'pirlygenes/decomposition/signature.py' 2026-04-19T00:17:58,602 adding 'pirlygenes/decomposition/templates.py' 2026-04-19T00:17:58,606 adding 'pirlygenes-4.9.12.dist-info/licenses/LICENSE' 2026-04-19T00:17:58,612 adding 'pirlygenes-4.9.12.dist-info/METADATA' 2026-04-19T00:17:58,614 adding 'pirlygenes-4.9.12.dist-info/WHEEL' 2026-04-19T00:17:58,615 adding 'pirlygenes-4.9.12.dist-info/entry_points.txt' 2026-04-19T00:17:58,616 adding 'pirlygenes-4.9.12.dist-info/top_level.txt' 2026-04-19T00:17:58,618 adding 'pirlygenes-4.9.12.dist-info/RECORD' 2026-04-19T00:17:58,685 removing build/bdist.linux-armv7l/wheel 2026-04-19T00:17:58,818 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-19T00:17:58,973 Created wheel for pirlygenes: filename=pirlygenes-4.9.12-py3-none-any.whl size=6787914 sha256=b24fa9ddf8de248d6990887004a0e594158d25513408fca848b4d84bdc4c4eb7 2026-04-19T00:17:58,974 Stored in directory: /tmp/pip-ephem-wheel-cache-2mqptt13/wheels/73/99/c3/12ebd940d648a1a76a5108b3d8afaa99b1d7591ecf1249019f 2026-04-19T00:17:58,995 Successfully built pirlygenes 2026-04-19T00:17:59,158 Removed build tracker: '/tmp/pip-build-tracker-tf_8q8yk'