2026-04-19T09:18:53,484 Created temporary directory: /tmp/pip-ephem-wheel-cache-zhgn1eo8 2026-04-19T09:18:53,486 Created temporary directory: /tmp/pip-build-tracker-1humspwf 2026-04-19T09:18:53,487 Initialized build tracking at /tmp/pip-build-tracker-1humspwf 2026-04-19T09:18:53,487 Created build tracker: /tmp/pip-build-tracker-1humspwf 2026-04-19T09:18:53,488 Entered build tracker: /tmp/pip-build-tracker-1humspwf 2026-04-19T09:18:53,489 Created temporary directory: /tmp/pip-wheel-zjd5x7n7 2026-04-19T09:18:53,492 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,132 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,133 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,133 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,136 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,136 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,137 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,138 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,138 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,138 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,139 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,139 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-19T09:18:54,140 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-04-19T09:18:54,141 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-04-19T09:18:54,168 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-04-19T09:18:54,188 Collecting omicverse==2.1.2 2026-04-19T09:18:54,191 Created temporary directory: /tmp/pip-unpack-gdx4w0ex 2026-04-19T09:18:54,422 Downloading omicverse-2.1.2.tar.gz (12.2 MB) 2026-04-19T09:19:01,169 Added omicverse==2.1.2 from https://files.pythonhosted.org/packages/95/fd/1600fa4e4017190e782d25259fad85b3157efe55796bb04cb288505e51b0/omicverse-2.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-1humspwf' 2026-04-19T09:19:01,177 Created temporary directory: /tmp/pip-build-env-tzpzd08r 2026-04-19T09:19:01,181 Installing build dependencies: started 2026-04-19T09:19:01,183 Running command pip subprocess to install build dependencies 2026-04-19T09:19:01,213 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-19T09:19:01,253 Traceback (most recent call last): 2026-04-19T09:19:01,254 File "", line 192, in addpackage 2026-04-19T09:19:01,254 File "", line 1, in 2026-04-19T09:19:01,255 ModuleNotFoundError: No module named 'outofcuda' 2026-04-19T09:19:01,256 Remainder of file ignored 2026-04-19T09:19:02,325 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-19T09:19:02,753 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-19T09:19:02,777 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-19T09:19:04,597 Collecting setuptools>=61 2026-04-19T09:19:04,673 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-19T09:19:04,942 Collecting wheel 2026-04-19T09:19:04,959 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-19T09:19:06,982 Collecting Cython 2026-04-19T09:19:07,800 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-04-19T09:19:08,265 Collecting packaging>=24.0 2026-04-19T09:19:08,283 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-19T09:19:11,249 Installing collected packages: setuptools, packaging, Cython, wheel 2026-04-19T09:19:18,401 Creating /tmp/pip-build-env-tzpzd08r/overlay/local/bin 2026-04-19T09:19:18,403 changing mode of /tmp/pip-build-env-tzpzd08r/overlay/local/bin/cygdb to 755 2026-04-19T09:19:18,405 changing mode of /tmp/pip-build-env-tzpzd08r/overlay/local/bin/cython to 755 2026-04-19T09:19:18,407 changing mode of /tmp/pip-build-env-tzpzd08r/overlay/local/bin/cythonize to 755 2026-04-19T09:19:18,536 changing mode of /tmp/pip-build-env-tzpzd08r/overlay/local/bin/wheel to 755 2026-04-19T09:19:18,565 Successfully installed Cython-3.2.4 packaging-26.1 setuptools-82.0.1 wheel-0.46.3 2026-04-19T09:19:18,947 Installing build dependencies: finished with status 'done' 2026-04-19T09:19:18,953 Getting requirements to build wheel: started 2026-04-19T09:19:18,954 Running command Getting requirements to build wheel 2026-04-19T09:19:19,693 /tmp/pip-build-env-tzpzd08r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-19T09:19:19,693 !! 2026-04-19T09:19:19,694 ******************************************************************************** 2026-04-19T09:19:19,695 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-19T09:19:19,696 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-19T09:19:19,697 or your builds will no longer be supported. 2026-04-19T09:19:19,698 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T09:19:19,699 ******************************************************************************** 2026-04-19T09:19:19,700 !! 2026-04-19T09:19:19,701 corresp(dist, value, root_dir) 2026-04-19T09:19:19,980 running egg_info 2026-04-19T09:19:19,986 writing omicverse.egg-info/PKG-INFO 2026-04-19T09:19:20,005 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-04-19T09:19:20,007 writing entry points to omicverse.egg-info/entry_points.txt 2026-04-19T09:19:20,017 writing requirements to omicverse.egg-info/requires.txt 2026-04-19T09:19:20,019 writing top-level names to omicverse.egg-info/top_level.txt 2026-04-19T09:19:20,288 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:20,356 reading manifest template 'MANIFEST.in' 2026-04-19T09:19:21,485 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-19T09:19:23,083 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-19T09:19:23,599 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-19T09:19:28,721 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-19T09:19:29,234 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-19T09:19:29,783 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-19T09:19:30,298 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-19T09:19:30,874 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-19T09:19:31,389 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-19T09:19:31,957 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-19T09:19:31,962 no previously-included directories found matching '.git' 2026-04-19T09:19:31,966 no previously-included directories found matching '.github' 2026-04-19T09:19:31,971 no previously-included directories found matching '.claude' 2026-04-19T09:19:31,975 no previously-included directories found matching '.pytest_cache' 2026-04-19T09:19:31,979 no previously-included directories found matching '.ruff_cache' 2026-04-19T09:19:31,984 no previously-included directories found matching '.vscode' 2026-04-19T09:19:31,988 no previously-included directories found matching 'docs' 2026-04-19T09:19:31,992 no previously-included directories found matching 'tests' 2026-04-19T09:19:31,997 no previously-included directories found matching 'OvIntelligence' 2026-04-19T09:19:32,001 no previously-included directories found matching 'READMEM' 2026-04-19T09:19:32,005 no previously-included directories found matching 'omicverse_guide' 2026-04-19T09:19:32,010 no previously-included directories found matching 'omicverse_web' 2026-04-19T09:19:32,014 no previously-included directories found matching 'tmp' 2026-04-19T09:19:32,019 no previously-included directories found matching 'tmp_omicverse' 2026-04-19T09:19:32,023 no previously-included directories found matching 'Skill_Seekers' 2026-04-19T09:19:32,032 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-19T09:19:32,044 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-19T09:19:32,050 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-19T09:19:32,051 adding license file 'LICENSE' 2026-04-19T09:19:32,131 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:32,249 Getting requirements to build wheel: finished with status 'done' 2026-04-19T09:19:32,253 Created temporary directory: /tmp/pip-modern-metadata-rnvvrtam 2026-04-19T09:19:32,255 Preparing metadata (pyproject.toml): started 2026-04-19T09:19:32,257 Running command Preparing metadata (pyproject.toml) 2026-04-19T09:19:32,942 /tmp/pip-build-env-tzpzd08r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-19T09:19:32,943 !! 2026-04-19T09:19:32,944 ******************************************************************************** 2026-04-19T09:19:32,945 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-19T09:19:32,946 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-19T09:19:32,946 or your builds will no longer be supported. 2026-04-19T09:19:32,948 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T09:19:32,948 ******************************************************************************** 2026-04-19T09:19:32,950 !! 2026-04-19T09:19:32,950 corresp(dist, value, root_dir) 2026-04-19T09:19:33,234 running dist_info 2026-04-19T09:19:33,245 creating /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info 2026-04-19T09:19:33,246 writing /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/PKG-INFO 2026-04-19T09:19:33,266 writing dependency_links to /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/dependency_links.txt 2026-04-19T09:19:33,268 writing entry points to /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/entry_points.txt 2026-04-19T09:19:33,279 writing requirements to /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/requires.txt 2026-04-19T09:19:33,280 writing top-level names to /tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/top_level.txt 2026-04-19T09:19:33,282 writing manifest file '/tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:33,501 reading manifest file '/tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:33,503 reading manifest template 'MANIFEST.in' 2026-04-19T09:19:34,521 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-19T09:19:36,124 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-19T09:19:36,883 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-19T09:19:41,944 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-19T09:19:42,540 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-19T09:19:43,019 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-19T09:19:43,568 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-19T09:19:44,089 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-19T09:19:44,667 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-19T09:19:45,319 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-19T09:19:45,323 no previously-included directories found matching '.git' 2026-04-19T09:19:45,327 no previously-included directories found matching '.github' 2026-04-19T09:19:45,331 no previously-included directories found matching '.claude' 2026-04-19T09:19:45,334 no previously-included directories found matching '.pytest_cache' 2026-04-19T09:19:45,337 no previously-included directories found matching '.ruff_cache' 2026-04-19T09:19:45,339 no previously-included directories found matching '.vscode' 2026-04-19T09:19:45,342 no previously-included directories found matching 'docs' 2026-04-19T09:19:45,344 no previously-included directories found matching 'tests' 2026-04-19T09:19:45,347 no previously-included directories found matching 'OvIntelligence' 2026-04-19T09:19:45,349 no previously-included directories found matching 'READMEM' 2026-04-19T09:19:45,352 no previously-included directories found matching 'omicverse_guide' 2026-04-19T09:19:45,355 no previously-included directories found matching 'omicverse_web' 2026-04-19T09:19:45,358 no previously-included directories found matching 'tmp' 2026-04-19T09:19:45,360 no previously-included directories found matching 'tmp_omicverse' 2026-04-19T09:19:45,363 no previously-included directories found matching 'Skill_Seekers' 2026-04-19T09:19:45,368 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-19T09:19:45,374 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-19T09:19:45,379 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-19T09:19:45,380 adding license file 'LICENSE' 2026-04-19T09:19:45,442 writing manifest file '/tmp/pip-modern-metadata-rnvvrtam/omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:45,445 creating '/tmp/pip-modern-metadata-rnvvrtam/omicverse-2.1.2.dist-info' 2026-04-19T09:19:45,598 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-19T09:19:45,612 Source in /tmp/pip-wheel-zjd5x7n7/omicverse_1f0fafc3ffce43358f41a6c585c4ab90 has version 2.1.2, which satisfies requirement omicverse==2.1.2 from https://files.pythonhosted.org/packages/95/fd/1600fa4e4017190e782d25259fad85b3157efe55796bb04cb288505e51b0/omicverse-2.1.2.tar.gz 2026-04-19T09:19:45,614 Removed omicverse==2.1.2 from https://files.pythonhosted.org/packages/95/fd/1600fa4e4017190e782d25259fad85b3157efe55796bb04cb288505e51b0/omicverse-2.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-1humspwf' 2026-04-19T09:19:45,639 Created temporary directory: /tmp/pip-unpack-hhf25ix4 2026-04-19T09:19:45,640 Building wheels for collected packages: omicverse 2026-04-19T09:19:45,645 Created temporary directory: /tmp/pip-wheel-_izw_v29 2026-04-19T09:19:45,645 Destination directory: /tmp/pip-wheel-_izw_v29 2026-04-19T09:19:45,648 Building wheel for omicverse (pyproject.toml): started 2026-04-19T09:19:45,649 Running command Building wheel for omicverse (pyproject.toml) 2026-04-19T09:19:46,317 /tmp/pip-build-env-tzpzd08r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-19T09:19:46,317 !! 2026-04-19T09:19:46,318 ******************************************************************************** 2026-04-19T09:19:46,319 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-19T09:19:46,320 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-19T09:19:46,320 or your builds will no longer be supported. 2026-04-19T09:19:46,321 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T09:19:46,322 ******************************************************************************** 2026-04-19T09:19:46,323 !! 2026-04-19T09:19:46,324 corresp(dist, value, root_dir) 2026-04-19T09:19:46,624 running bdist_wheel 2026-04-19T09:19:46,644 running build 2026-04-19T09:19:46,644 running build_py 2026-04-19T09:19:46,651 creating build/lib/omicverse 2026-04-19T09:19:46,653 copying omicverse/claw.py -> build/lib/omicverse 2026-04-19T09:19:46,656 copying omicverse/__init__.py -> build/lib/omicverse 2026-04-19T09:19:46,658 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-04-19T09:19:46,661 copying omicverse/_registry.py -> build/lib/omicverse 2026-04-19T09:19:46,664 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-04-19T09:19:46,666 copying omicverse/cli.py -> build/lib/omicverse 2026-04-19T09:19:46,668 copying omicverse/_settings.py -> build/lib/omicverse 2026-04-19T09:19:46,671 copying omicverse/_monitor.py -> build/lib/omicverse 2026-04-19T09:19:46,673 copying omicverse/_optional.py -> build/lib/omicverse 2026-04-19T09:19:46,676 creating build/lib/omicverse/metabol 2026-04-19T09:19:46,677 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,680 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,682 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,685 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,687 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,690 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,692 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,695 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,697 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,700 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,702 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,705 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,707 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,709 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,711 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,714 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,716 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,719 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,721 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,724 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,726 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-04-19T09:19:46,729 creating build/lib/omicverse/io 2026-04-19T09:19:46,730 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-04-19T09:19:46,732 creating build/lib/omicverse/space 2026-04-19T09:19:46,733 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-04-19T09:19:46,735 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-04-19T09:19:46,738 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-04-19T09:19:46,740 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-04-19T09:19:46,741 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-04-19T09:19:46,744 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-04-19T09:19:46,747 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-04-19T09:19:46,749 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-04-19T09:19:46,752 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-04-19T09:19:46,755 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-04-19T09:19:46,757 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-04-19T09:19:46,759 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-04-19T09:19:46,762 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-04-19T09:19:46,765 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-04-19T09:19:46,768 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-04-19T09:19:46,771 creating build/lib/omicverse/jarvis 2026-04-19T09:19:46,772 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,775 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,776 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,778 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,780 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,783 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,785 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,787 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,789 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,792 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,794 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,797 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,800 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,803 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-04-19T09:19:46,805 creating build/lib/omicverse/bulk 2026-04-19T09:19:46,806 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,808 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,810 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,813 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,816 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,827 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,828 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,831 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,834 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,837 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,841 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-04-19T09:19:46,844 creating build/lib/omicverse/external 2026-04-19T09:19:46,845 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-04-19T09:19:46,849 creating build/lib/omicverse/bulk2single 2026-04-19T09:19:46,850 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,852 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,855 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,858 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,861 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,864 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,867 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,870 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,872 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,875 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-04-19T09:19:46,879 creating build/lib/omicverse/micro 2026-04-19T09:19:46,880 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,882 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,885 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,888 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,890 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,893 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,895 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-04-19T09:19:46,899 creating build/lib/omicverse/pp 2026-04-19T09:19:46,900 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,903 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,905 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,908 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,911 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,915 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,918 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,921 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,924 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,927 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,931 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,933 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,936 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,939 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,942 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,946 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,948 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,952 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,954 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,957 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,959 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,962 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,966 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,969 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,972 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-04-19T09:19:46,977 creating build/lib/omicverse/pl 2026-04-19T09:19:46,978 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,981 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,984 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,986 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,988 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,994 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-04-19T09:19:46,997 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,000 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,002 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,005 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,007 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,011 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,013 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,017 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,019 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,023 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,029 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,033 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,036 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,039 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,043 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,046 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,048 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,052 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,054 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,059 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,061 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,063 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-04-19T09:19:47,070 creating build/lib/omicverse/alignment 2026-04-19T09:19:47,071 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,073 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,075 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,078 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,080 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,082 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,085 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,087 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,090 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,092 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,095 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,097 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,100 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,102 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,105 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,107 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,109 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-04-19T09:19:47,111 creating build/lib/omicverse/datasets 2026-04-19T09:19:47,112 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-04-19T09:19:47,114 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-04-19T09:19:47,118 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-04-19T09:19:47,120 creating build/lib/omicverse/fm 2026-04-19T09:19:47,121 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-04-19T09:19:47,123 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-04-19T09:19:47,125 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-04-19T09:19:47,128 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-04-19T09:19:47,131 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-04-19T09:19:47,133 creating build/lib/omicverse/llm 2026-04-19T09:19:47,135 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,137 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,139 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,142 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,146 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,148 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,152 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,154 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,159 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,161 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,163 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,167 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-04-19T09:19:47,174 creating build/lib/omicverse/utils 2026-04-19T09:19:47,175 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,177 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,179 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,182 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,184 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,186 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,189 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,192 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,194 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,196 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,199 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,201 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,204 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,206 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,209 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,212 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,215 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,217 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,220 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,223 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,226 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,228 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,230 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,232 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,235 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,237 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,240 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,242 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,244 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,247 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,250 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,252 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,256 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,258 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,261 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,264 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,266 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,270 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,273 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,276 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,279 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,283 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,286 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,288 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-04-19T09:19:47,293 creating build/lib/omicverse/single 2026-04-19T09:19:47,294 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-04-19T09:19:47,303 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-04-19T09:19:47,306 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-04-19T09:19:47,309 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-04-19T09:19:47,312 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-04-19T09:19:47,316 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-04-19T09:19:47,318 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-04-19T09:19:47,320 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-04-19T09:19:47,324 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-04-19T09:19:47,327 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-04-19T09:19:47,331 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-04-19T09:19:47,334 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-04-19T09:19:47,337 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-04-19T09:19:47,340 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-04-19T09:19:47,342 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-04-19T09:19:47,345 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-04-19T09:19:47,348 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-04-19T09:19:47,353 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-04-19T09:19:47,356 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-04-19T09:19:47,359 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-04-19T09:19:47,361 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-04-19T09:19:47,364 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-04-19T09:19:47,367 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-04-19T09:19:47,370 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-04-19T09:19:47,372 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-04-19T09:19:47,375 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-04-19T09:19:47,378 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-04-19T09:19:47,380 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-04-19T09:19:47,383 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-04-19T09:19:47,386 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-04-19T09:19:47,388 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-04-19T09:19:47,391 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-04-19T09:19:47,395 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-04-19T09:19:47,398 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-04-19T09:19:47,401 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-04-19T09:19:47,404 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-04-19T09:19:47,407 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-04-19T09:19:47,411 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-04-19T09:19:47,413 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-04-19T09:19:47,416 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-04-19T09:19:47,420 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-04-19T09:19:47,423 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-04-19T09:19:47,427 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-04-19T09:19:47,429 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-04-19T09:19:47,432 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-04-19T09:19:47,435 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-04-19T09:19:47,439 creating build/lib/omicverse/mcp 2026-04-19T09:19:47,440 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,443 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,446 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,448 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,451 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,454 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,458 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,461 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,465 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,468 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,471 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,474 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,476 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-04-19T09:19:47,480 creating build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,481 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,484 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,487 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,489 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,491 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,493 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,496 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,498 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,501 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:19:47,504 creating build/lib/omicverse/agent 2026-04-19T09:19:47,505 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-04-19T09:19:47,508 creating build/lib/omicverse/io/bulk 2026-04-19T09:19:47,509 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-04-19T09:19:47,512 creating build/lib/omicverse/io/spatial 2026-04-19T09:19:47,513 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-04-19T09:19:47,516 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-04-19T09:19:47,519 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-04-19T09:19:47,521 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-04-19T09:19:47,525 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-04-19T09:19:47,528 creating build/lib/omicverse/io/single 2026-04-19T09:19:47,529 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-04-19T09:19:47,532 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-04-19T09:19:47,534 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-04-19T09:19:47,537 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-04-19T09:19:47,540 creating build/lib/omicverse/io/general 2026-04-19T09:19:47,542 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-04-19T09:19:47,544 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-04-19T09:19:47,547 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-04-19T09:19:47,550 creating build/lib/omicverse/jarvis/memory 2026-04-19T09:19:47,551 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-04-19T09:19:47,554 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-04-19T09:19:47,559 creating build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,560 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,564 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,567 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,570 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,573 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,576 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,580 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-04-19T09:19:47,583 creating build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,585 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,589 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,593 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,598 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,604 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,609 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,614 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,618 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-04-19T09:19:47,624 creating build/lib/omicverse/jarvis/gateway 2026-04-19T09:19:47,626 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-04-19T09:19:47,630 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-04-19T09:19:47,633 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-04-19T09:19:47,636 creating build/lib/omicverse/bulk/_alignment 2026-04-19T09:19:47,638 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-04-19T09:19:47,642 creating build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,644 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,647 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,651 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,655 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,657 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,659 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-04-19T09:19:47,663 creating build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,664 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,667 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,669 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,672 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,674 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-19T09:19:47,677 creating build/lib/omicverse/external/scSLAT 2026-04-19T09:19:47,679 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-04-19T09:19:47,681 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-04-19T09:19:47,684 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-04-19T09:19:47,687 creating build/lib/omicverse/external/popv 2026-04-19T09:19:47,688 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,691 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,694 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,697 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,700 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,702 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-04-19T09:19:47,706 creating build/lib/omicverse/external/cytotrace2 2026-04-19T09:19:47,707 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-04-19T09:19:47,710 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-04-19T09:19:47,712 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-04-19T09:19:47,715 creating build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,717 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,719 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,722 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,725 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,728 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,731 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,734 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,737 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,739 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,742 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-04-19T09:19:47,745 creating build/lib/omicverse/external/bin2cell 2026-04-19T09:19:47,746 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-04-19T09:19:47,748 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-04-19T09:19:47,753 creating build/lib/omicverse/external/scMulan 2026-04-19T09:19:47,754 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-04-19T09:19:47,756 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-04-19T09:19:47,759 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-04-19T09:19:47,762 creating build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,763 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,765 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,767 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,769 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,771 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,774 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,777 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,780 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,782 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,784 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,787 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,789 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,792 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,795 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,797 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-04-19T09:19:47,799 creating build/lib/omicverse/external/scdiffusion 2026-04-19T09:19:47,800 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-04-19T09:19:47,802 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-04-19T09:19:47,806 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-04-19T09:19:47,808 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-04-19T09:19:47,811 creating build/lib/omicverse/external/GNTD 2026-04-19T09:19:47,812 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-04-19T09:19:47,814 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-04-19T09:19:47,816 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-04-19T09:19:47,818 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-04-19T09:19:47,821 creating build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,822 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,824 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,826 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,827 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,829 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,831 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,833 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-04-19T09:19:47,835 creating build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,836 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,838 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,840 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,843 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,845 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-04-19T09:19:47,848 creating build/lib/omicverse/external/somde 2026-04-19T09:19:47,849 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-04-19T09:19:47,851 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-04-19T09:19:47,853 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-04-19T09:19:47,856 creating build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,857 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,859 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,861 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,863 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,866 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,867 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-04-19T09:19:47,870 creating build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,871 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,873 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,875 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,878 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,881 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,882 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:19:47,885 creating build/lib/omicverse/external/cellanova 2026-04-19T09:19:47,887 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-04-19T09:19:47,889 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-04-19T09:19:47,891 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-04-19T09:19:47,894 creating build/lib/omicverse/external/flowsig 2026-04-19T09:19:47,895 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-04-19T09:19:47,898 creating build/lib/omicverse/external/datacollect 2026-04-19T09:19:47,899 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-04-19T09:19:47,901 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-04-19T09:19:47,904 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-04-19T09:19:47,907 creating build/lib/omicverse/external/tosica 2026-04-19T09:19:47,908 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-04-19T09:19:47,911 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-04-19T09:19:47,912 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-04-19T09:19:47,915 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-04-19T09:19:47,918 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-04-19T09:19:47,921 creating build/lib/omicverse/external/gaston 2026-04-19T09:19:47,922 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,924 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,926 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,928 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,930 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,931 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,933 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,936 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,938 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,940 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,942 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,945 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,947 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,949 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,951 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,953 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-04-19T09:19:47,956 creating build/lib/omicverse/external/bulk2single 2026-04-19T09:19:47,957 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-04-19T09:19:47,959 creating build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,960 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,962 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,964 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,966 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,968 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,970 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-04-19T09:19:47,973 creating build/lib/omicverse/external/scanorama 2026-04-19T09:19:47,974 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-04-19T09:19:47,976 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-04-19T09:19:47,979 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-04-19T09:19:47,981 creating build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,982 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,985 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,987 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,990 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,992 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,995 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:47,997 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:48,000 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:48,002 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-04-19T09:19:48,005 creating build/lib/omicverse/external/BINARY 2026-04-19T09:19:48,006 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-04-19T09:19:48,008 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-04-19T09:19:48,010 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-04-19T09:19:48,013 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-04-19T09:19:48,016 creating build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,017 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,020 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,022 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,024 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,026 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,028 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,030 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,032 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,033 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,035 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,038 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,041 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,043 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,045 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,047 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,049 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,051 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,053 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,056 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,058 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,060 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,062 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-04-19T09:19:48,065 creating build/lib/omicverse/external/mofapy2 2026-04-19T09:19:48,066 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-04-19T09:19:48,068 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-04-19T09:19:48,069 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-04-19T09:19:48,072 creating build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,073 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,075 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,077 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,079 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,082 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,084 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,086 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,088 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,090 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,092 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,094 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,096 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,098 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-04-19T09:19:48,101 creating build/lib/omicverse/external/cnmf 2026-04-19T09:19:48,102 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-04-19T09:19:48,105 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-04-19T09:19:48,108 creating build/lib/omicverse/external/topact 2026-04-19T09:19:48,109 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,113 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,114 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,116 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,120 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,122 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,125 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,126 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-04-19T09:19:48,129 creating build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,130 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,133 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,135 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,136 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,139 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,141 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,143 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,146 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-04-19T09:19:48,149 creating build/lib/omicverse/external/CAST 2026-04-19T09:19:48,150 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,152 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,155 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,157 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,160 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,162 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,165 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-04-19T09:19:48,168 creating build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,169 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,171 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,174 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,176 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,179 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-04-19T09:19:48,182 creating build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,183 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,185 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,187 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,190 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,192 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,196 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,198 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,201 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,204 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-04-19T09:19:48,206 creating build/lib/omicverse/external/spaceflow 2026-04-19T09:19:48,207 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-04-19T09:19:48,209 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-04-19T09:19:48,212 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-04-19T09:19:48,214 creating build/lib/omicverse/external/tape 2026-04-19T09:19:48,215 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,218 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,219 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,222 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,224 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,227 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-04-19T09:19:48,229 creating build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,230 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,232 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,239 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,241 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,243 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-04-19T09:19:48,246 creating build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,247 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,249 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,251 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,253 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,255 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-04-19T09:19:48,258 creating build/lib/omicverse/external/PROST 2026-04-19T09:19:48,259 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,261 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,264 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,266 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,268 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,271 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,273 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-04-19T09:19:48,276 creating build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,277 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,279 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,281 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,283 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,285 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,288 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,290 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-04-19T09:19:48,293 creating build/lib/omicverse/external/mpl_chord 2026-04-19T09:19:48,294 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-04-19T09:19:48,295 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-04-19T09:19:48,298 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-04-19T09:19:48,301 creating build/lib/omicverse/external/palantir 2026-04-19T09:19:48,302 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,304 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,306 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,308 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,311 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,313 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,315 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,319 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,321 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,323 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,326 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-04-19T09:19:48,328 creating build/lib/omicverse/external/nocd 2026-04-19T09:19:48,329 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,331 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,333 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,335 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,336 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,339 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-04-19T09:19:48,341 creating build/lib/omicverse/external/STT 2026-04-19T09:19:48,342 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-04-19T09:19:48,345 creating build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,346 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,348 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,351 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,353 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,355 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-04-19T09:19:48,358 creating build/lib/omicverse/external/spaco 2026-04-19T09:19:48,359 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,362 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,364 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,367 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,371 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,373 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,376 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,378 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,381 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-04-19T09:19:48,386 creating build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,387 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,390 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,392 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,395 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,398 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,401 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,405 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,408 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,411 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,413 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,416 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,418 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-04-19T09:19:48,422 creating build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,424 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,426 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,429 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,433 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,436 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,438 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,442 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,445 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,448 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-04-19T09:19:48,452 creating build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,454 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,457 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,459 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,462 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,464 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,466 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,469 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,471 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,474 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,477 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,479 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-04-19T09:19:48,483 creating build/lib/omicverse/external/harmony 2026-04-19T09:19:48,484 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-04-19T09:19:48,486 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-04-19T09:19:48,489 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-04-19T09:19:48,491 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-04-19T09:19:48,494 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-04-19T09:19:48,498 creating build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,499 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,502 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,504 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,507 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,510 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,512 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,516 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,519 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,521 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-04-19T09:19:48,525 creating build/lib/omicverse/external/commot 2026-04-19T09:19:48,526 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-04-19T09:19:48,529 creating build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,531 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,534 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,535 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,538 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,541 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,544 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,546 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,548 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,551 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,553 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,555 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,558 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,560 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,562 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,565 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,568 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,570 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,572 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,575 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,577 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,580 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-04-19T09:19:48,583 creating build/lib/omicverse/external/VIA 2026-04-19T09:19:48,584 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,586 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,590 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,593 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,600 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,607 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,615 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-04-19T09:19:48,618 creating build/lib/omicverse/external/scSLAT/viz 2026-04-19T09:19:48,620 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-19T09:19:48,622 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-19T09:19:48,626 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-19T09:19:48,629 creating build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,630 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,632 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,635 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,637 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,639 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,642 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,645 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,648 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-04-19T09:19:48,651 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-19T09:19:48,652 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-19T09:19:48,655 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-19T09:19:48,658 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-04-19T09:19:48,659 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-19T09:19:48,661 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-19T09:19:48,664 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-19T09:19:48,668 creating build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,669 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,671 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,674 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,676 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,679 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,681 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,684 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,687 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,689 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,692 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,695 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,697 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-04-19T09:19:48,700 creating build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,702 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,704 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,707 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,709 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,712 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-04-19T09:19:48,715 creating build/lib/omicverse/external/scMulan/model 2026-04-19T09:19:48,716 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-04-19T09:19:48,719 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-04-19T09:19:48,722 creating build/lib/omicverse/external/scMulan/utils 2026-04-19T09:19:48,724 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-04-19T09:19:48,726 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-04-19T09:19:48,729 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:19:48,731 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:19:48,735 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,737 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,739 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,742 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,744 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,747 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,749 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,751 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,754 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,757 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,759 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,762 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,765 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,767 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,771 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,773 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,776 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,778 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,781 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:19:48,784 creating build/lib/omicverse/external/scdiffusion/VAE 2026-04-19T09:19:48,785 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-19T09:19:48,787 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-19T09:19:48,789 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-19T09:19:48,792 creating build/lib/omicverse/external/space/cell2location 2026-04-19T09:19:48,794 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-04-19T09:19:48,796 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-04-19T09:19:48,799 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:19:48,800 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:19:48,802 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:19:48,804 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:19:48,806 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:19:48,809 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-19T09:19:48,810 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-19T09:19:48,812 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-19T09:19:48,814 creating build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,815 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,817 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,820 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,822 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,824 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-19T09:19:48,827 creating build/lib/omicverse/external/space/cell2location/nn 2026-04-19T09:19:48,828 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-19T09:19:48,830 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-19T09:19:48,832 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-19T09:19:48,835 creating build/lib/omicverse/external/space/cell2location/utils 2026-04-19T09:19:48,836 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-19T09:19:48,838 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-19T09:19:48,841 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-19T09:19:48,844 creating build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,845 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,848 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,850 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,852 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,855 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,857 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,859 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,861 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-19T09:19:48,864 creating build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,865 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,867 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,870 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,873 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,875 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:19:48,878 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-19T09:19:48,879 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-19T09:19:48,882 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-19T09:19:48,884 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-19T09:19:48,887 creating build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,888 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,891 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,892 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,894 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,896 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-19T09:19:48,899 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-04-19T09:19:48,900 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-19T09:19:48,902 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-19T09:19:48,905 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-19T09:19:48,907 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-19T09:19:48,908 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-19T09:19:48,910 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-19T09:19:48,913 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-19T09:19:48,916 creating build/lib/omicverse/external/flowsig/plotting 2026-04-19T09:19:48,917 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-04-19T09:19:48,919 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-04-19T09:19:48,922 creating build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,923 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,925 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,927 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,929 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,931 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,934 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-19T09:19:48,937 creating build/lib/omicverse/external/flowsig/utilities 2026-04-19T09:19:48,938 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-04-19T09:19:48,940 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-04-19T09:19:48,943 creating build/lib/omicverse/external/flowsig/tools 2026-04-19T09:19:48,944 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-04-19T09:19:48,946 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-04-19T09:19:48,948 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-04-19T09:19:48,951 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-04-19T09:19:48,954 creating build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,955 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,958 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,960 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,962 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,964 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,967 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,970 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,972 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,974 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,977 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,980 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,982 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,985 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,987 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,990 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,993 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,995 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:48,997 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:49,000 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:49,003 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:49,005 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:49,008 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-19T09:19:49,011 creating build/lib/omicverse/external/datacollect/config 2026-04-19T09:19:49,012 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-04-19T09:19:49,014 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-04-19T09:19:49,018 creating build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,019 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,021 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,023 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,025 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,027 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,030 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,033 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,035 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,038 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,040 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,042 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,045 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,047 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,050 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,052 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,055 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,057 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,060 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,062 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,064 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,067 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,069 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,071 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,074 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,076 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,079 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,082 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,084 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,087 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,089 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,092 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,094 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,096 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,099 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-04-19T09:19:49,102 creating build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,103 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,105 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,107 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,110 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,112 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,114 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-04-19T09:19:49,117 creating build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,118 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,120 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,122 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,125 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,127 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,129 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,131 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-19T09:19:49,134 creating build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,135 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,138 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,140 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,142 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,145 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,147 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,150 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,152 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-19T09:19:49,155 creating build/lib/omicverse/external/datacollect/api/pathways 2026-04-19T09:19:49,156 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-19T09:19:49,158 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-19T09:19:49,161 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-19T09:19:49,163 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-19T09:19:49,166 creating build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,167 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,170 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,173 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,176 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,179 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,181 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-19T09:19:49,185 creating build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,187 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,189 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,192 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,196 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,199 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,202 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,205 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,208 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,211 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-19T09:19:49,215 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,216 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,219 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,223 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,226 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,228 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:19:49,232 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,233 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,236 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,239 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,243 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,246 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,250 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,253 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,256 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,259 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,263 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:19:49,266 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,267 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,269 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,270 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,272 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,275 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,277 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,279 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,281 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,284 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,286 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,288 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,290 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:19:49,294 creating build/lib/omicverse/external/mofapy2/run 2026-04-19T09:19:49,295 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-04-19T09:19:49,296 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-04-19T09:19:49,300 creating build/lib/omicverse/external/mofapy2/simulate 2026-04-19T09:19:49,301 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-04-19T09:19:49,303 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-04-19T09:19:49,306 creating build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,307 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,309 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,311 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,313 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,316 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,319 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-19T09:19:49,321 creating build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,322 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,325 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,327 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,329 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,331 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-19T09:19:49,335 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,336 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,338 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,341 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,343 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,345 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,348 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,350 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,352 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,355 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,358 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,361 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,363 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,366 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,369 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,371 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,374 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,376 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,379 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-19T09:19:49,382 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,383 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,386 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,388 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,390 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,391 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,393 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,396 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,398 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,400 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,402 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,405 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-19T09:19:49,407 creating build/lib/omicverse/external/CAST/model 2026-04-19T09:19:49,408 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-04-19T09:19:49,410 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-04-19T09:19:49,412 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-04-19T09:19:49,415 creating build/lib/omicverse/external/single/arboreto 2026-04-19T09:19:49,417 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-04-19T09:19:49,418 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-04-19T09:19:49,421 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-04-19T09:19:49,423 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-04-19T09:19:49,426 creating build/lib/omicverse/external/nocd/nn 2026-04-19T09:19:49,428 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-04-19T09:19:49,430 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-04-19T09:19:49,432 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-04-19T09:19:49,434 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-04-19T09:19:49,437 creating build/lib/omicverse/external/nocd/metrics 2026-04-19T09:19:49,438 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-04-19T09:19:49,440 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-04-19T09:19:49,442 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-04-19T09:19:49,444 creating build/lib/omicverse/external/STT/pl 2026-04-19T09:19:49,446 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-04-19T09:19:49,449 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-04-19T09:19:49,451 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-04-19T09:19:49,453 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-04-19T09:19:49,456 creating build/lib/omicverse/external/STT/tl 2026-04-19T09:19:49,457 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-04-19T09:19:49,459 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-04-19T09:19:49,461 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-04-19T09:19:49,463 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-04-19T09:19:49,466 creating build/lib/omicverse/external/spaco/external 2026-04-19T09:19:49,467 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-04-19T09:19:49,469 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-04-19T09:19:49,472 creating build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:19:49,473 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:19:49,475 creating build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,476 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,478 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,480 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,483 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,486 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-19T09:19:49,489 creating build/lib/omicverse/external/commot/plotting 2026-04-19T09:19:49,490 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-04-19T09:19:49,493 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-04-19T09:19:49,495 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-04-19T09:19:49,498 creating build/lib/omicverse/external/commot/preprocessing 2026-04-19T09:19:49,499 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-19T09:19:49,501 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-19T09:19:49,503 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-19T09:19:49,506 creating build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,507 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,510 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,512 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,514 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,516 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-04-19T09:19:49,519 creating build/lib/omicverse/external/commot/tools 2026-04-19T09:19:49,520 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-04-19T09:19:49,522 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-04-19T09:19:49,525 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-04-19T09:19:49,529 creating build/lib/omicverse/external/latentvelo/plotting 2026-04-19T09:19:49,530 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-19T09:19:49,532 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-19T09:19:49,535 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-19T09:19:49,538 creating build/lib/omicverse/external/latentvelo/evaluation 2026-04-19T09:19:49,538 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-19T09:19:49,541 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-19T09:19:49,543 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-19T09:19:49,545 creating build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,546 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,548 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,550 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,552 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,554 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-19T09:19:49,556 creating build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,557 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,560 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,562 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,564 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,567 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,569 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,572 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,575 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-19T09:19:49,578 creating build/lib/omicverse/pp/_scrublet_backend 2026-04-19T09:19:49,579 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-19T09:19:49,581 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-19T09:19:49,584 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-19T09:19:49,587 creating build/lib/omicverse/pp/experimental 2026-04-19T09:19:49,588 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-04-19T09:19:49,590 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-04-19T09:19:49,592 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-04-19T09:19:49,595 creating build/lib/omicverse/datasets/data_files 2026-04-19T09:19:49,596 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-04-19T09:19:49,599 creating build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,600 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,602 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,604 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,606 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,608 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,609 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,612 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,614 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-04-19T09:19:49,617 creating build/lib/omicverse/llm/dr 2026-04-19T09:19:49,618 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,620 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,621 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,624 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,626 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,627 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-04-19T09:19:49,630 creating build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,631 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,633 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,636 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,638 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,640 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,642 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-04-19T09:19:49,645 creating build/lib/omicverse/llm/domain_research 2026-04-19T09:19:49,646 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-04-19T09:19:49,648 creating build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,649 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,651 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,654 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,655 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,658 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,660 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-04-19T09:19:49,663 creating build/lib/omicverse/llm/utils 2026-04-19T09:19:49,664 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-04-19T09:19:49,665 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-04-19T09:19:49,668 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-04-19T09:19:49,670 creating build/lib/omicverse/llm/CellPLM 2026-04-19T09:19:49,672 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-04-19T09:19:49,674 creating build/lib/omicverse/llm/scfoundation 2026-04-19T09:19:49,675 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:19:49,678 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:19:49,679 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:19:49,681 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:19:49,685 creating build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,686 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,690 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,692 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,694 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,697 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,700 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,704 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,708 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,711 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,714 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,717 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,720 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-04-19T09:19:49,723 creating build/lib/omicverse/llm/dr/verify 2026-04-19T09:19:49,725 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-04-19T09:19:49,728 creating build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,729 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,731 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,734 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,736 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,738 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-04-19T09:19:49,741 creating build/lib/omicverse/llm/dr/write 2026-04-19T09:19:49,742 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-04-19T09:19:49,744 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-04-19T09:19:49,747 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-04-19T09:19:49,750 creating build/lib/omicverse/llm/dr/research 2026-04-19T09:19:49,751 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-04-19T09:19:49,753 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-04-19T09:19:49,755 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-04-19T09:19:49,758 creating build/lib/omicverse/llm/dr/retrievers 2026-04-19T09:19:49,759 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-04-19T09:19:49,762 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-04-19T09:19:49,765 creating build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,767 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,769 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,772 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,775 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,777 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-19T09:19:49,780 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-04-19T09:19:49,781 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-19T09:19:49,784 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-19T09:19:49,787 creating build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,789 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,791 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,795 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,798 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,800 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,802 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-19T09:19:49,806 creating build/lib/omicverse/llm/scgpt/tasks 2026-04-19T09:19:49,807 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-19T09:19:49,810 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-19T09:19:49,812 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-19T09:19:49,815 creating build/lib/omicverse/llm/scgpt/utils 2026-04-19T09:19:49,816 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-04-19T09:19:49,818 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-04-19T09:19:49,822 creating build/lib/omicverse/llm/domain_research/write 2026-04-19T09:19:49,823 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-04-19T09:19:49,826 creating build/lib/omicverse/llm/domain_research/retrievers 2026-04-19T09:19:49,827 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-04-19T09:19:49,830 creating build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,831 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,834 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,837 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,840 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,843 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-19T09:19:49,846 creating build/lib/omicverse/llm/CellPLM/encoder 2026-04-19T09:19:49,847 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-19T09:19:49,849 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-19T09:19:49,852 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-19T09:19:49,855 creating build/lib/omicverse/llm/CellPLM/objective 2026-04-19T09:19:49,857 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-19T09:19:49,859 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-19T09:19:49,862 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-19T09:19:49,864 creating build/lib/omicverse/llm/CellPLM/latent 2026-04-19T09:19:49,866 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-19T09:19:49,868 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-19T09:19:49,871 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-19T09:19:49,874 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-19T09:19:49,877 creating build/lib/omicverse/llm/CellPLM/head 2026-04-19T09:19:49,878 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-04-19T09:19:49,880 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-04-19T09:19:49,884 creating build/lib/omicverse/llm/CellPLM/embedder 2026-04-19T09:19:49,885 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-04-19T09:19:49,887 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-04-19T09:19:49,890 creating build/lib/omicverse/llm/CellPLM/decoder 2026-04-19T09:19:49,891 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-19T09:19:49,894 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-19T09:19:49,896 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-19T09:19:49,899 creating build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,900 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,903 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,906 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,909 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,911 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-19T09:19:49,915 creating build/lib/omicverse/llm/CellPLM/model 2026-04-19T09:19:49,917 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-04-19T09:19:49,919 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-04-19T09:19:49,922 creating build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,923 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,927 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,929 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,932 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,934 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,937 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-19T09:19:49,940 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,942 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,945 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,948 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,950 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,953 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-19T09:19:49,956 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,957 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,960 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,963 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,966 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,968 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,971 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,973 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:19:49,978 creating build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,980 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,984 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,986 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,990 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,993 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,995 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:49,999 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-19T09:19:50,004 creating build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,006 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,009 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,013 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,017 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,020 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,024 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,028 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,031 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,034 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,038 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,041 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,045 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,048 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-04-19T09:19:50,051 creating build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,053 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,055 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,058 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,061 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,065 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,067 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,071 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,073 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,075 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-04-19T09:19:50,078 creating build/lib/omicverse/utils/biocontext 2026-04-19T09:19:50,079 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-04-19T09:19:50,081 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-04-19T09:19:50,084 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-04-19T09:19:50,086 creating build/lib/omicverse/utils/harness 2026-04-19T09:19:50,087 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,089 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,092 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,094 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,096 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,099 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,101 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-04-19T09:19:50,105 creating build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,106 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,108 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,111 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,113 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,115 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,117 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,119 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,122 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,125 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,127 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,129 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,132 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,134 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,137 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,139 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,142 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,145 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,147 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,150 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,152 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,155 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,157 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,160 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,162 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,165 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,168 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,170 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,173 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,176 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,179 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,182 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,185 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,188 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-04-19T09:19:50,190 creating build/lib/omicverse/single/templates 2026-04-19T09:19:50,191 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-04-19T09:19:50,193 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-04-19T09:19:50,196 creating build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,197 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,199 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,202 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,204 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,206 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-19T09:19:50,210 running egg_info 2026-04-19T09:19:50,224 writing omicverse.egg-info/PKG-INFO 2026-04-19T09:19:50,243 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-04-19T09:19:50,245 writing entry points to omicverse.egg-info/entry_points.txt 2026-04-19T09:19:50,254 writing requirements to omicverse.egg-info/requires.txt 2026-04-19T09:19:50,256 writing top-level names to omicverse.egg-info/top_level.txt 2026-04-19T09:19:50,458 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-19T09:19:50,525 reading manifest template 'MANIFEST.in' 2026-04-19T09:19:51,600 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-19T09:19:53,183 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-19T09:19:53,697 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-19T09:19:58,471 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-19T09:19:59,228 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-19T09:19:59,933 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-19T09:20:00,449 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-19T09:20:00,978 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-19T09:20:01,484 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-19T09:20:02,009 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-19T09:20:02,013 no previously-included directories found matching '.git' 2026-04-19T09:20:02,016 no previously-included directories found matching '.github' 2026-04-19T09:20:02,020 no previously-included directories found matching '.claude' 2026-04-19T09:20:02,023 no previously-included directories found matching '.pytest_cache' 2026-04-19T09:20:02,027 no previously-included directories found matching '.ruff_cache' 2026-04-19T09:20:02,030 no previously-included directories found matching '.vscode' 2026-04-19T09:20:02,034 no previously-included directories found matching 'docs' 2026-04-19T09:20:02,038 no previously-included directories found matching 'tests' 2026-04-19T09:20:02,041 no previously-included directories found matching 'OvIntelligence' 2026-04-19T09:20:02,045 no previously-included directories found matching 'READMEM' 2026-04-19T09:20:02,048 no previously-included directories found matching 'omicverse_guide' 2026-04-19T09:20:02,052 no previously-included directories found matching 'omicverse_web' 2026-04-19T09:20:02,055 no previously-included directories found matching 'tmp' 2026-04-19T09:20:02,058 no previously-included directories found matching 'tmp_omicverse' 2026-04-19T09:20:02,062 no previously-included directories found matching 'Skill_Seekers' 2026-04-19T09:20:02,068 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-19T09:20:02,077 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-19T09:20:02,084 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-19T09:20:02,084 adding license file 'LICENSE' 2026-04-19T09:20:02,161 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-19T09:20:02,266 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-04-19T09:20:02,268 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-04-19T09:20:02,270 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-04-19T09:20:02,273 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-04-19T09:20:02,276 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-04-19T09:20:02,278 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-04-19T09:20:02,281 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-04-19T09:20:02,283 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-04-19T09:20:02,285 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-04-19T09:20:02,288 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-04-19T09:20:02,291 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:02,722 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:02,754 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-04-19T09:20:02,756 creating build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,757 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,760 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,763 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,766 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,768 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,771 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,775 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,777 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,780 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,783 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,786 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,789 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-04-19T09:20:02,792 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:02,798 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:02,798 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:02,881 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:02,886 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:02,893 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:02,894 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:02,901 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:02,909 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:02,916 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:02,917 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:02,939 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:02,960 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:02,981 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:20:02,984 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:20:02,987 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:20:02,990 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-19T09:20:02,993 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:02,996 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:03,000 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:03,004 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:03,005 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:03,009 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:03,014 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:03,020 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-04-19T09:20:03,022 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-04-19T09:20:03,027 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-04-19T09:20:03,038 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-04-19T09:20:03,109 creating build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,110 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,113 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,115 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,126 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,141 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-04-19T09:20:03,154 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:20:03,161 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:20:03,163 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:20:03,166 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-04-19T09:20:03,169 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:03,193 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:03,212 creating build/lib/omicverse/llm/scfoundation/models 2026-04-19T09:20:03,213 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-04-19T09:20:03,216 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-04-19T09:20:03,219 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-04-19T09:20:03,222 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-04-19T09:20:03,224 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-04-19T09:20:03,227 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-04-19T09:20:03,230 creating build/lib/omicverse/single/templates/img 2026-04-19T09:20:03,231 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-04-19T09:20:03,233 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-04-19T09:20:03,237 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-04-19T09:20:03,241 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-04-19T09:20:03,354 installing to build/bdist.linux-armv7l/wheel 2026-04-19T09:20:03,355 running install 2026-04-19T09:20:03,378 running install_lib 2026-04-19T09:20:03,384 creating build/bdist.linux-armv7l/wheel 2026-04-19T09:20:03,387 creating build/bdist.linux-armv7l/wheel/omicverse 2026-04-19T09:20:03,388 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:03,391 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:03,394 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:03,397 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-04-19T09:20:03,398 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,401 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,403 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,406 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,409 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,412 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,415 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,417 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,420 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,422 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,425 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,427 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,430 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,432 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,434 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,436 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,438 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,441 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,443 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,446 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,448 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-04-19T09:20:03,451 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-04-19T09:20:03,452 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-04-19T09:20:03,455 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-04-19T09:20:03,456 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-04-19T09:20:03,458 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-04-19T09:20:03,460 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-19T09:20:03,462 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-19T09:20:03,464 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-19T09:20:03,467 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-19T09:20:03,470 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-19T09:20:03,473 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-04-19T09:20:03,474 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-19T09:20:03,476 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-19T09:20:03,479 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-19T09:20:03,481 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-19T09:20:03,484 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-04-19T09:20:03,485 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-19T09:20:03,487 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-19T09:20:03,490 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-19T09:20:03,493 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-04-19T09:20:03,494 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,497 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,500 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,501 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,503 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,506 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,508 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,511 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,514 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,517 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,519 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,521 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,525 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,528 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,530 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-19T09:20:03,534 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-04-19T09:20:03,535 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,538 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,541 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-04-19T09:20:03,542 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-04-19T09:20:03,545 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-04-19T09:20:03,547 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,550 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,553 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,555 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,558 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,561 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-04-19T09:20:03,563 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,565 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,568 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,570 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,573 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,575 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,577 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-19T09:20:03,579 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,582 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-04-19T09:20:03,584 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,586 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,589 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,593 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,596 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,600 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,603 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,605 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-19T09:20:03,609 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,612 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,614 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,617 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,620 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,623 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,627 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,629 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,632 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-04-19T09:20:03,634 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-19T09:20:03,637 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-19T09:20:03,639 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-19T09:20:03,641 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,644 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-19T09:20:03,646 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:03,650 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-04-19T09:20:03,651 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,654 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-04-19T09:20:03,655 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-04-19T09:20:03,658 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,660 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,663 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,666 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,682 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,684 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,687 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,690 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,694 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,697 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-19T09:20:03,701 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-04-19T09:20:03,703 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-04-19T09:20:03,705 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,707 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,710 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,713 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,715 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,717 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-19T09:20:03,721 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,722 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,724 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,727 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,730 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,732 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-19T09:20:03,735 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-04-19T09:20:03,738 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-04-19T09:20:03,740 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-19T09:20:03,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-04-19T09:20:03,744 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-19T09:20:03,746 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-19T09:20:03,750 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-19T09:20:03,752 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-04-19T09:20:03,754 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,756 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,759 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-04-19T09:20:03,760 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-04-19T09:20:03,763 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-04-19T09:20:03,765 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,767 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,770 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,773 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,776 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-04-19T09:20:03,777 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-19T09:20:03,779 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-19T09:20:03,781 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-19T09:20:03,784 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,786 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-19T09:20:03,789 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-19T09:20:03,791 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-19T09:20:03,794 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-04-19T09:20:03,795 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,798 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-04-19T09:20:03,799 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,801 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,803 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,805 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,808 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,810 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,813 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,815 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,817 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,820 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,822 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,824 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-19T09:20:03,826 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,829 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,832 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,834 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,836 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-04-19T09:20:03,837 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-19T09:20:03,839 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-19T09:20:03,842 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-19T09:20:03,844 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-19T09:20:03,846 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-19T09:20:03,848 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-19T09:20:03,851 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-04-19T09:20:03,852 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-19T09:20:03,855 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-19T09:20:03,857 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-19T09:20:03,859 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-04-19T09:20:03,860 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,862 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,865 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,867 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,870 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,873 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,875 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,878 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,881 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,883 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-19T09:20:03,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-04-19T09:20:03,887 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-04-19T09:20:03,889 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-04-19T09:20:03,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-04-19T09:20:03,895 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-19T09:20:03,897 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-19T09:20:03,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-04-19T09:20:03,901 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-04-19T09:20:03,904 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-04-19T09:20:03,906 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-19T09:20:03,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-04-19T09:20:03,910 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-04-19T09:20:03,913 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-04-19T09:20:03,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-04-19T09:20:03,917 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:03,918 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:03,951 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:04,396 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-19T09:20:04,400 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-04-19T09:20:04,401 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,403 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,405 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,407 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,410 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,413 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,416 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,418 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,421 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,423 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,425 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,427 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,430 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,432 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,435 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-19T09:20:04,437 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-04-19T09:20:04,439 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,440 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,442 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,444 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,447 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,449 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,451 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,453 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,455 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,457 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,459 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,462 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,464 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,467 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,470 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,471 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,474 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,475 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,478 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-19T09:20:04,480 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-19T09:20:04,482 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-04-19T09:20:04,484 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-19T09:20:04,485 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-19T09:20:04,488 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-19T09:20:04,490 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-19T09:20:04,493 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-19T09:20:04,495 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-19T09:20:04,498 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-04-19T09:20:04,500 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-04-19T09:20:04,501 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-04-19T09:20:04,504 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:20:04,505 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:20:04,507 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:20:04,510 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:20:04,512 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-19T09:20:04,515 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-04-19T09:20:04,516 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-04-19T09:20:04,518 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-04-19T09:20:04,520 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-04-19T09:20:04,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,525 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,527 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,529 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,531 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,534 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-19T09:20:04,537 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-04-19T09:20:04,539 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-19T09:20:04,541 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-19T09:20:04,543 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-19T09:20:04,546 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-04-19T09:20:04,547 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-19T09:20:04,549 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-19T09:20:04,552 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-19T09:20:04,554 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,555 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,557 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,559 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,562 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,565 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,567 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,569 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,571 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-19T09:20:04,574 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-04-19T09:20:04,576 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,579 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-04-19T09:20:04,580 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-19T09:20:04,582 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-19T09:20:04,585 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-19T09:20:04,588 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,591 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,594 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,597 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,599 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-19T09:20:04,602 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,603 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,606 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,607 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,609 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,611 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-19T09:20:04,615 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-04-19T09:20:04,616 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-19T09:20:04,618 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-19T09:20:04,621 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-19T09:20:04,624 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-04-19T09:20:04,625 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-19T09:20:04,627 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-19T09:20:04,630 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-19T09:20:04,634 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-04-19T09:20:04,635 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-19T09:20:04,638 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-19T09:20:04,639 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-19T09:20:04,642 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-19T09:20:04,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-04-19T09:20:04,646 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,648 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,650 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,653 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,655 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,657 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,659 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-19T09:20:04,662 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-04-19T09:20:04,663 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,665 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,667 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,669 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,672 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,674 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-19T09:20:04,677 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-04-19T09:20:04,678 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-19T09:20:04,680 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-19T09:20:04,683 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-19T09:20:04,686 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-04-19T09:20:04,687 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,689 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,691 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,693 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,695 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,697 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-04-19T09:20:04,700 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-04-19T09:20:04,701 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,703 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,705 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,707 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,710 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,712 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,714 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-19T09:20:04,717 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-04-19T09:20:04,718 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-19T09:20:04,720 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-19T09:20:04,722 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-19T09:20:04,725 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-04-19T09:20:04,726 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-04-19T09:20:04,729 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-04-19T09:20:04,730 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-04-19T09:20:04,733 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-04-19T09:20:04,735 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,737 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,739 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,741 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,743 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,745 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,748 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-19T09:20:04,751 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-04-19T09:20:04,752 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-04-19T09:20:04,754 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-04-19T09:20:04,757 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-04-19T09:20:04,758 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-19T09:20:04,760 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-19T09:20:04,762 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-19T09:20:04,765 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-19T09:20:04,768 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-04-19T09:20:04,769 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-19T09:20:04,773 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-04-19T09:20:04,774 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,777 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,779 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,781 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,783 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,786 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,788 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,791 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,794 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,797 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,799 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,801 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,804 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,806 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,809 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,811 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,813 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,815 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,817 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,820 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,822 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,824 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-19T09:20:04,827 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-04-19T09:20:04,828 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-04-19T09:20:04,830 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-04-19T09:20:04,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-04-19T09:20:04,834 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,837 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,839 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,841 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,843 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,846 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,848 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,851 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,853 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,855 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,858 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,860 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-19T09:20:04,862 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-19T09:20:04,864 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-19T09:20:04,867 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-19T09:20:04,869 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-19T09:20:04,872 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-04-19T09:20:04,873 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,876 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,878 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,880 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,882 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,884 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,888 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,890 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,892 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,894 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,896 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,898 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,901 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-19T09:20:04,903 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,905 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,907 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,909 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,911 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,913 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,916 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,918 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,920 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,923 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,925 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,927 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,930 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,932 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,934 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,936 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,938 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,940 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,943 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,944 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,946 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,948 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,950 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,953 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,956 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,958 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,960 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-19T09:20:04,963 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,965 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,967 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,970 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-04-19T09:20:04,971 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-19T09:20:04,973 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-19T09:20:04,975 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-19T09:20:04,977 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-19T09:20:04,979 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,981 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,984 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,986 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,988 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,990 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:04,993 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-04-19T09:20:04,994 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:04,996 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:04,998 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:05,001 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:05,003 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:05,005 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-19T09:20:05,009 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-19T09:20:05,011 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,013 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,015 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,017 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,020 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,022 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,025 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,027 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,029 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,032 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-19T09:20:05,035 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-04-19T09:20:05,036 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,037 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,040 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,042 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,045 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,047 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-19T09:20:05,050 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-04-19T09:20:05,051 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-19T09:20:05,054 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-19T09:20:05,055 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-19T09:20:05,058 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-19T09:20:05,060 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-19T09:20:05,063 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-04-19T09:20:05,064 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,066 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,068 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,070 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,071 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,073 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,075 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,077 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,079 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,081 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,083 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,085 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,087 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,090 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,091 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,093 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-19T09:20:05,096 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-04-19T09:20:05,097 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-04-19T09:20:05,099 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,100 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,102 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,104 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,106 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,108 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-19T09:20:05,111 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,112 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,114 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,116 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,120 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,125 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,128 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,131 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,133 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,136 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,138 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,141 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-19T09:20:05,143 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,144 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,146 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:05,147 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:05,152 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:05,157 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-19T09:20:05,308 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,310 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,312 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,314 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,317 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,319 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,321 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,323 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,325 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,327 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,330 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-19T09:20:05,333 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-04-19T09:20:05,334 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,336 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,338 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,340 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,342 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,345 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-19T09:20:05,348 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-04-19T09:20:05,349 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-19T09:20:05,351 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-19T09:20:05,353 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-19T09:20:05,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-04-19T09:20:05,357 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,361 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,362 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,365 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,367 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,370 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,373 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,375 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,377 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-19T09:20:05,381 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-04-19T09:20:05,382 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-19T09:20:05,384 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-19T09:20:05,386 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-19T09:20:05,389 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-19T09:20:05,392 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-04-19T09:20:05,393 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,395 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,398 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,400 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,401 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,403 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,405 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,407 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,409 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,410 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,413 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,416 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,418 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,420 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,422 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,424 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,426 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,428 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,430 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,432 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,435 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,438 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-19T09:20:05,440 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-04-19T09:20:05,441 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-19T09:20:05,443 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-19T09:20:05,446 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-04-19T09:20:05,447 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-04-19T09:20:05,448 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-04-19T09:20:05,453 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:05,454 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:05,456 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:05,475 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:05,499 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-19T09:20:05,519 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:05,528 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:05,537 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-19T09:20:05,545 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-19T09:20:05,548 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-04-19T09:20:05,549 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-04-19T09:20:05,550 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-04-19T09:20:05,554 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,555 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,556 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,558 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,561 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,564 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,567 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-19T09:20:05,570 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-04-19T09:20:05,571 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-19T09:20:05,574 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-19T09:20:05,577 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,578 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,580 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,583 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,586 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,588 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,592 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,595 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,597 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,600 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,603 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,606 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,609 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,613 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,615 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,618 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,621 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,624 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,627 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-19T09:20:05,630 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-19T09:20:05,633 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,635 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,638 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,640 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,643 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,645 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,648 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,652 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,655 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,657 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,659 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,662 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-19T09:20:05,665 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-19T09:20:05,667 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-19T09:20:05,670 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-04-19T09:20:05,671 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,674 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,676 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,679 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,682 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,684 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,687 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,688 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,690 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,693 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,695 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,697 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,699 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-19T09:20:05,702 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-04-19T09:20:05,703 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-04-19T09:20:05,706 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-04-19T09:20:05,710 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-04-19T09:20:05,712 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,715 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,717 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,719 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,723 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,725 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,727 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,730 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-19T09:20:05,732 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-04-19T09:20:05,733 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,736 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,739 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,741 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,744 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,747 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,749 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,752 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-19T09:20:05,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-04-19T09:20:05,756 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,758 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,760 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,763 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,765 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-04-19T09:20:05,766 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-19T09:20:05,768 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-19T09:20:05,770 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-19T09:20:05,772 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,774 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,777 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-19T09:20:05,781 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-04-19T09:20:05,782 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-19T09:20:05,784 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-19T09:20:05,786 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-19T09:20:05,789 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-19T09:20:05,791 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-19T09:20:05,794 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-04-19T09:20:05,796 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,798 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,800 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,803 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,805 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,808 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,810 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,813 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,815 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-04-19T09:20:05,818 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-04-19T09:20:05,819 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-19T09:20:05,821 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-19T09:20:05,824 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-19T09:20:05,826 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-04-19T09:20:05,827 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,830 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,831 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,834 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,836 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,838 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-19T09:20:05,841 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-04-19T09:20:05,842 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-19T09:20:05,844 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-19T09:20:05,850 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-19T09:20:05,853 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-19T09:20:05,855 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-19T09:20:05,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-04-19T09:20:05,859 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-19T09:20:05,862 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-19T09:20:05,864 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-19T09:20:05,866 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-19T09:20:05,868 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-19T09:20:05,871 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-04-19T09:20:05,872 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,874 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,877 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,880 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,882 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,884 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,886 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-19T09:20:05,890 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-04-19T09:20:05,891 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,893 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,895 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,897 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,899 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,902 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,904 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-19T09:20:05,906 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-04-19T09:20:05,907 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-19T09:20:05,910 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-19T09:20:05,912 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-19T09:20:05,915 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-04-19T09:20:05,917 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-04-19T09:20:05,918 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-19T09:20:05,920 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-19T09:20:05,923 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-19T09:20:05,925 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-19T09:20:05,928 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-04-19T09:20:05,929 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,931 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,933 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,935 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,938 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,940 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,942 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,945 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,948 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,950 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,953 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-19T09:20:05,955 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-04-19T09:20:05,956 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,958 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,960 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,963 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-04-19T09:20:05,964 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-19T09:20:05,966 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-19T09:20:05,968 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-19T09:20:05,970 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-19T09:20:05,972 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-04-19T09:20:05,974 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-19T09:20:05,976 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-19T09:20:05,978 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-19T09:20:05,980 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,982 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,984 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-19T09:20:05,987 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-04-19T09:20:05,988 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-04-19T09:20:05,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-04-19T09:20:05,992 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-19T09:20:05,995 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-19T09:20:05,997 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-19T09:20:05,999 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-19T09:20:06,002 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-04-19T09:20:06,003 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-19T09:20:06,005 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-19T09:20:06,007 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-19T09:20:06,009 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-19T09:20:06,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-04-19T09:20:06,014 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-19T09:20:06,016 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-19T09:20:06,019 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-19T09:20:06,021 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-19T09:20:06,023 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-19T09:20:06,026 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-04-19T09:20:06,027 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,030 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,032 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,034 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,037 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-04-19T09:20:06,038 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-04-19T09:20:06,040 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-04-19T09:20:06,043 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,045 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,047 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,049 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,051 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-19T09:20:06,054 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-04-19T09:20:06,055 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,058 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,059 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,062 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,064 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,067 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,069 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,071 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,074 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,076 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,078 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,080 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-19T09:20:06,083 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-04-19T09:20:06,084 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,086 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,089 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,092 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,094 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,097 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-04-19T09:20:06,098 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-19T09:20:06,100 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-19T09:20:06,102 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-19T09:20:06,105 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-19T09:20:06,107 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-19T09:20:06,109 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,112 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,115 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,118 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-19T09:20:06,121 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-04-19T09:20:06,122 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,124 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,126 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,128 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,130 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,132 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,134 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,137 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,139 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,141 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,144 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-19T09:20:06,147 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-04-19T09:20:06,148 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-19T09:20:06,150 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-19T09:20:06,152 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-19T09:20:06,154 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-19T09:20:06,157 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-19T09:20:06,160 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-04-19T09:20:06,161 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,163 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,165 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,167 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,170 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,172 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,175 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,178 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,181 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-19T09:20:06,185 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-04-19T09:20:06,186 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-04-19T09:20:06,188 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,189 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,191 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,193 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,196 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,199 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-19T09:20:06,202 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-04-19T09:20:06,203 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-19T09:20:06,206 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-19T09:20:06,208 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-19T09:20:06,211 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-04-19T09:20:06,212 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-19T09:20:06,215 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-19T09:20:06,217 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-04-19T09:20:06,219 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-04-19T09:20:06,220 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:06,222 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:06,225 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:06,230 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-19T09:20:06,235 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:06,236 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:06,240 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-19T09:20:06,244 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-19T09:20:06,247 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-04-19T09:20:06,248 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-19T09:20:06,251 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-19T09:20:06,253 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-19T09:20:06,255 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-19T09:20:06,257 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-19T09:20:06,260 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-04-19T09:20:06,261 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-19T09:20:06,263 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-19T09:20:06,266 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-19T09:20:06,270 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-04-19T09:20:06,271 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,274 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,276 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,278 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,280 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,284 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,286 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,288 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,290 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,292 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-04-19T09:20:06,296 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-19T09:20:06,298 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-19T09:20:06,300 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-19T09:20:06,303 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,305 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,307 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,310 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-04-19T09:20:06,311 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-19T09:20:06,313 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-19T09:20:06,315 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-19T09:20:06,317 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,320 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-04-19T09:20:06,324 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-19T09:20:06,326 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-19T09:20:06,328 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-19T09:20:06,329 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-19T09:20:06,331 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-19T09:20:06,334 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,336 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,337 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,339 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,342 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-04-19T09:20:06,343 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,346 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,348 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,350 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,353 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,355 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,358 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,361 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-19T09:20:06,364 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,367 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-19T09:20:06,370 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-04-19T09:20:06,371 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,373 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,377 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,380 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,387 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,394 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,402 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-19T09:20:06,405 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-04-19T09:20:06,406 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,408 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,411 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,413 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,416 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,418 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,421 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,424 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,426 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,428 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-19T09:20:06,432 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-04-19T09:20:06,433 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,435 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,438 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,440 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,442 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,445 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,447 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-04-19T09:20:06,450 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:06,453 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-04-19T09:20:06,454 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,456 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,458 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,460 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,463 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,466 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,468 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,471 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,473 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,476 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,481 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-04-19T09:20:06,482 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-19T09:20:06,484 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-19T09:20:06,487 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-19T09:20:06,490 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,492 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,495 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,497 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,500 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,504 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-04-19T09:20:06,505 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-19T09:20:06,507 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-19T09:20:06,510 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-19T09:20:06,512 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,515 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,518 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,521 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,522 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,525 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,527 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,530 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,533 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,536 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-19T09:20:06,541 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-04-19T09:20:06,542 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,545 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,548 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,550 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,553 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,560 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,563 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,565 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,568 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,570 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,573 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,577 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,579 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,583 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,585 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,589 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,595 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,599 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,601 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,604 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,608 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,611 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,613 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,616 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,618 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,623 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,625 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,627 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-19T09:20:06,633 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-04-19T09:20:06,634 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,637 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,639 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,641 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,643 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,646 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,648 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,650 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,653 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,655 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,657 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,660 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,662 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,664 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,667 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,669 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,671 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-19T09:20:06,673 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:06,675 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-04-19T09:20:06,676 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-19T09:20:06,678 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-19T09:20:06,682 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-19T09:20:06,684 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-04-19T09:20:06,685 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-19T09:20:06,688 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-19T09:20:06,691 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-04-19T09:20:06,692 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-19T09:20:06,694 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-19T09:20:06,697 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-19T09:20:06,707 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-19T09:20:06,718 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-19T09:20:06,739 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-19T09:20:06,820 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-19T09:20:06,825 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-19T09:20:06,827 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:06,831 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-04-19T09:20:06,833 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-19T09:20:06,835 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-19T09:20:06,838 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-04-19T09:20:06,840 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,842 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,845 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,847 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,849 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,851 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,853 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,856 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-19T09:20:06,858 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-19T09:20:06,862 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-19T09:20:06,865 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-19T09:20:06,868 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-04-19T09:20:06,869 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:06,871 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:06,874 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:06,878 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:06,883 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-04-19T09:20:06,885 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-04-19T09:20:06,887 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-04-19T09:20:06,890 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,892 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,894 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,896 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,899 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,902 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-04-19T09:20:06,903 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-19T09:20:06,905 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-19T09:20:06,908 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-19T09:20:06,910 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-19T09:20:06,912 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-19T09:20:06,915 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-04-19T09:20:06,916 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-19T09:20:06,917 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-19T09:20:06,920 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-19T09:20:06,922 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-04-19T09:20:06,923 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-19T09:20:06,925 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-19T09:20:06,927 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-19T09:20:06,929 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-19T09:20:06,931 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-04-19T09:20:06,932 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-04-19T09:20:06,935 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-04-19T09:20:06,938 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-04-19T09:20:06,939 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:06,941 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:06,943 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:06,946 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,947 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,949 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,951 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,953 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,955 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-19T09:20:06,957 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:06,959 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:06,961 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:06,981 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:06,984 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-19T09:20:07,007 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-04-19T09:20:07,009 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,011 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,015 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,018 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,020 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,022 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-19T09:20:07,026 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-04-19T09:20:07,027 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-19T09:20:07,030 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-19T09:20:07,032 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-19T09:20:07,035 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:07,037 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-04-19T09:20:07,038 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-04-19T09:20:07,040 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-04-19T09:20:07,043 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:07,045 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-19T09:20:07,048 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,050 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-04-19T09:20:07,051 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-04-19T09:20:07,054 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-04-19T09:20:07,055 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-04-19T09:20:07,058 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-04-19T09:20:07,059 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-04-19T09:20:07,061 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,065 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,067 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,071 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,074 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,077 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-04-19T09:20:07,078 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,080 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,083 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,086 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,087 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,091 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,094 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,097 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,100 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-19T09:20:07,103 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,107 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,110 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-19T09:20:07,113 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-04-19T09:20:07,115 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-19T09:20:07,118 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-19T09:20:07,121 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-19T09:20:07,125 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,131 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-04-19T09:20:07,133 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-04-19T09:20:07,136 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-04-19T09:20:07,138 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-19T09:20:07,140 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-19T09:20:07,143 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-19T09:20:07,147 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-04-19T09:20:07,149 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-19T09:20:07,151 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-19T09:20:07,155 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-19T09:20:07,158 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-04-19T09:20:07,160 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-19T09:20:07,163 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-19T09:20:07,165 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-19T09:20:07,169 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-19T09:20:07,172 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-04-19T09:20:07,174 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-04-19T09:20:07,177 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-04-19T09:20:07,181 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-04-19T09:20:07,183 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-04-19T09:20:07,186 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-04-19T09:20:07,189 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-04-19T09:20:07,191 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-19T09:20:07,194 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-19T09:20:07,197 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-19T09:20:07,200 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,201 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,203 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,206 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,209 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,211 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-19T09:20:07,215 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-04-19T09:20:07,216 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-04-19T09:20:07,218 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-04-19T09:20:07,222 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,223 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,226 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,228 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,231 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,233 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,236 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-19T09:20:07,240 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,242 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,245 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,248 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,251 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,253 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-19T09:20:07,256 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-04-19T09:20:07,258 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,260 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,262 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,264 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,267 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,274 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,278 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,279 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,281 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,284 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,287 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,289 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,291 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,294 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-19T09:20:07,297 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,299 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-19T09:20:07,303 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-04-19T09:20:07,305 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-04-19T09:20:07,307 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-19T09:20:07,313 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-04-19T09:20:07,315 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,319 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,321 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,324 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,328 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,329 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,332 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,334 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,337 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,339 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,341 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,345 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-19T09:20:07,348 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,351 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,354 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,358 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,361 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,364 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,368 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,371 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-19T09:20:07,374 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:07,378 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-04-19T09:20:07,379 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,382 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,385 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,388 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,391 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-04-19T09:20:07,393 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,396 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,399 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,402 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,405 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,408 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,411 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,414 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,417 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,419 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,422 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,425 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,428 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-19T09:20:07,431 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,434 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,437 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,440 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,443 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,445 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,448 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,450 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,453 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,455 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,459 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,462 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,465 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,468 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,471 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-04-19T09:20:07,473 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,475 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,478 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,481 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,484 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,486 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,490 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,493 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,496 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,498 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-19T09:20:07,501 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,504 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,507 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,510 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,512 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,514 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,517 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,519 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,523 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-04-19T09:20:07,525 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-19T09:20:07,527 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-19T09:20:07,530 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-19T09:20:07,533 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,535 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,537 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,541 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,544 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,546 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-04-19T09:20:07,548 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,550 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,553 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,555 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,558 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,561 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,564 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-19T09:20:07,567 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,570 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,574 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-04-19T09:20:07,575 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,578 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,581 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,584 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,586 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,589 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,592 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,595 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,598 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,600 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,603 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,605 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,608 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,611 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,613 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,617 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,619 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,622 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,625 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,627 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,631 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,633 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,636 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,639 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,642 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,645 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,647 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,650 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,652 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,655 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,658 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,660 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,663 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-19T09:20:07,665 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,667 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,670 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,672 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,675 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,677 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,679 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,682 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,685 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,688 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,690 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-19T09:20:07,693 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-04-19T09:20:07,694 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,700 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,704 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,706 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,709 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,711 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,713 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,715 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,718 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,721 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,724 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,726 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,730 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,733 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,735 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,737 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,740 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,745 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,748 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,750 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,753 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,755 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,759 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,762 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-04-19T09:20:07,763 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,765 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,767 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,770 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-04-19T09:20:07,771 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-19T09:20:07,774 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-19T09:20:07,775 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-19T09:20:07,778 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-19T09:20:07,781 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,783 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,785 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-19T09:20:07,788 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,790 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,793 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,796 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,798 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,801 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,803 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,806 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,809 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,813 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,816 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,818 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,821 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,824 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,826 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,830 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,832 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,835 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,838 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,841 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,844 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,845 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,848 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,850 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-19T09:20:07,854 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-04-19T09:20:07,855 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,857 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,859 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,862 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-04-19T09:20:07,863 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-19T09:20:07,865 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-19T09:20:07,867 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-19T09:20:07,869 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-19T09:20:07,871 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-19T09:20:07,874 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,876 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,878 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,881 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,883 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,887 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,889 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,891 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,894 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,896 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-19T09:20:07,899 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-04-19T09:20:07,900 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,902 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,905 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,907 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,909 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,911 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,913 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,915 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,917 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,919 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-19T09:20:07,922 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-04-19T09:20:07,923 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-04-19T09:20:07,925 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-19T09:20:07,927 running install_egg_info 2026-04-19T09:20:07,933 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.1.2-py3.11.egg-info 2026-04-19T09:20:07,946 running install_scripts 2026-04-19T09:20:07,961 creating build/bdist.linux-armv7l/wheel/omicverse-2.1.2.dist-info/WHEEL 2026-04-19T09:20:07,963 creating '/tmp/pip-wheel-_izw_v29/.tmp-r6ns216b/omicverse-2.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-19T09:20:07,967 adding 'omicverse/__init__.py' 2026-04-19T09:20:07,969 adding 'omicverse/_lazy_loader.py' 2026-04-19T09:20:07,971 adding 'omicverse/_monitor.py' 2026-04-19T09:20:07,972 adding 'omicverse/_oom_compat.py' 2026-04-19T09:20:07,974 adding 'omicverse/_optional.py' 2026-04-19T09:20:07,980 adding 'omicverse/_registry.py' 2026-04-19T09:20:07,985 adding 'omicverse/_settings.py' 2026-04-19T09:20:07,988 adding 'omicverse/claw.py' 2026-04-19T09:20:07,990 adding 'omicverse/cli.py' 2026-04-19T09:20:07,992 adding 'omicverse/agent/__init__.py' 2026-04-19T09:20:07,995 adding 'omicverse/alignment/STAR.py' 2026-04-19T09:20:07,996 adding 'omicverse/alignment/__init__.py' 2026-04-19T09:20:07,998 adding 'omicverse/alignment/_cli_utils.py' 2026-04-19T09:20:08,000 adding 'omicverse/alignment/_db.py' 2026-04-19T09:20:08,003 adding 'omicverse/alignment/amplicon_16s.py' 2026-04-19T09:20:08,005 adding 'omicverse/alignment/cutadapt.py' 2026-04-19T09:20:08,008 adding 'omicverse/alignment/dada2.py' 2026-04-19T09:20:08,010 adding 'omicverse/alignment/fastp.py' 2026-04-19T09:20:08,011 adding 'omicverse/alignment/fasttree.py' 2026-04-19T09:20:08,014 adding 'omicverse/alignment/featureCount.py' 2026-04-19T09:20:08,016 adding 'omicverse/alignment/fq_dump.py' 2026-04-19T09:20:08,020 adding 'omicverse/alignment/kb_api.py' 2026-04-19T09:20:08,021 adding 'omicverse/alignment/mafft.py' 2026-04-19T09:20:08,023 adding 'omicverse/alignment/phylogeny.py' 2026-04-19T09:20:08,025 adding 'omicverse/alignment/pipeline.py' 2026-04-19T09:20:08,027 adding 'omicverse/alignment/prefetch.py' 2026-04-19T09:20:08,029 adding 'omicverse/alignment/vsearch.py' 2026-04-19T09:20:08,034 adding 'omicverse/bulk/_Deseq2.py' 2026-04-19T09:20:08,038 adding 'omicverse/bulk/_Enrichment.py' 2026-04-19T09:20:08,041 adding 'omicverse/bulk/_Gene_module.py' 2026-04-19T09:20:08,043 adding 'omicverse/bulk/__init__.py' 2026-04-19T09:20:08,085 adding 'omicverse/bulk/_chm13.py' 2026-04-19T09:20:08,091 adding 'omicverse/bulk/_combat.py' 2026-04-19T09:20:08,093 adding 'omicverse/bulk/_decov.py' 2026-04-19T09:20:08,094 adding 'omicverse/bulk/_df_apply.py' 2026-04-19T09:20:08,099 adding 'omicverse/bulk/_dynamicTree.py' 2026-04-19T09:20:08,101 adding 'omicverse/bulk/_network.py' 2026-04-19T09:20:08,103 adding 'omicverse/bulk/_tcga.py' 2026-04-19T09:20:08,105 adding 'omicverse/bulk/_alignment/__init__.py' 2026-04-19T09:20:08,107 adding 'omicverse/bulk2single/__init__.py' 2026-04-19T09:20:08,110 adding 'omicverse/bulk2single/_bulk2single.py' 2026-04-19T09:20:08,112 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-04-19T09:20:08,115 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-04-19T09:20:08,120 adding 'omicverse/bulk2single/_map_utils.py' 2026-04-19T09:20:08,124 adding 'omicverse/bulk2single/_map_utils1.py' 2026-04-19T09:20:08,126 adding 'omicverse/bulk2single/_scsemi.py' 2026-04-19T09:20:08,129 adding 'omicverse/bulk2single/_single2spatial.py' 2026-04-19T09:20:08,131 adding 'omicverse/bulk2single/_utils.py' 2026-04-19T09:20:08,133 adding 'omicverse/bulk2single/_vae.py' 2026-04-19T09:20:08,135 adding 'omicverse/datasets/__init__.py' 2026-04-19T09:20:08,141 adding 'omicverse/datasets/_datasets.py' 2026-04-19T09:20:08,143 adding 'omicverse/datasets/_signatures.py' 2026-04-19T09:20:08,145 adding 'omicverse/datasets/data_files/README.md' 2026-04-19T09:20:08,185 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-04-19T09:20:08,187 adding 'omicverse/datasets/data_files/human_alias_list.txt' 2026-04-19T09:20:08,705 adding 'omicverse/datasets/data_files/mart_export.txt' 2026-04-19T09:20:08,737 adding 'omicverse/datasets/data_files/smoothDatakNN.py' 2026-04-19T09:20:08,740 adding 'omicverse/datasets/data_files/TF/allTFs_human.txt' 2026-04-19T09:20:08,742 adding 'omicverse/datasets/data_files/TF/allTFs_mouse.txt' 2026-04-19T09:20:08,766 adding 'omicverse/datasets/data_files/TF/allTFs_zebrafish.txt' 2026-04-19T09:20:08,808 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-04-19T09:20:08,849 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-04-19T09:20:08,856 adding 'omicverse/external/__init__.py' 2026-04-19T09:20:08,858 adding 'omicverse/external/BINARY/Model.py' 2026-04-19T09:20:08,860 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-04-19T09:20:08,861 adding 'omicverse/external/BINARY/__init__.py' 2026-04-19T09:20:08,864 adding 'omicverse/external/BINARY/utils.py' 2026-04-19T09:20:08,866 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-04-19T09:20:08,868 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-04-19T09:20:08,872 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-04-19T09:20:08,874 adding 'omicverse/external/CAST/__init__.py' 2026-04-19T09:20:08,876 adding 'omicverse/external/CAST/main.py' 2026-04-19T09:20:08,879 adding 'omicverse/external/CAST/utils.py' 2026-04-19T09:20:08,881 adding 'omicverse/external/CAST/visualize.py' 2026-04-19T09:20:08,882 adding 'omicverse/external/CAST/model/__init__.py' 2026-04-19T09:20:08,884 adding 'omicverse/external/CAST/model/aug.py' 2026-04-19T09:20:08,885 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-04-19T09:20:08,887 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-04-19T09:20:08,889 adding 'omicverse/external/CEFCON/__init__.py' 2026-04-19T09:20:08,891 adding 'omicverse/external/CEFCON/_aucell.py' 2026-04-19T09:20:08,893 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-04-19T09:20:08,897 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-04-19T09:20:08,899 adding 'omicverse/external/CEFCON/datasets.py' 2026-04-19T09:20:08,901 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-04-19T09:20:08,903 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-04-19T09:20:08,906 adding 'omicverse/external/CEFCON/utils.py' 2026-04-19T09:20:08,908 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-04-19T09:20:08,910 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-04-19T09:20:08,913 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-04-19T09:20:08,915 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-04-19T09:20:08,917 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-04-19T09:20:08,920 adding 'omicverse/external/GNTD/_GNTD.py' 2026-04-19T09:20:08,921 adding 'omicverse/external/GNTD/_NTD.py' 2026-04-19T09:20:08,923 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-04-19T09:20:08,924 adding 'omicverse/external/GNTD/_utils.py' 2026-04-19T09:20:08,927 adding 'omicverse/external/GraphST/GraphST.py' 2026-04-19T09:20:08,928 adding 'omicverse/external/GraphST/__init__.py' 2026-04-19T09:20:08,930 adding 'omicverse/external/GraphST/model.py' 2026-04-19T09:20:08,931 adding 'omicverse/external/GraphST/preprocess.py' 2026-04-19T09:20:08,933 adding 'omicverse/external/GraphST/readme.txt' 2026-04-19T09:20:08,934 adding 'omicverse/external/GraphST/utils.py' 2026-04-19T09:20:08,936 adding 'omicverse/external/NaiveDE/__init__.py' 2026-04-19T09:20:08,937 adding 'omicverse/external/NaiveDE/base.py' 2026-04-19T09:20:08,939 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-04-19T09:20:08,940 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-04-19T09:20:08,942 adding 'omicverse/external/NaiveDE/impulse.py' 2026-04-19T09:20:08,943 adding 'omicverse/external/NaiveDE/loom.py' 2026-04-19T09:20:08,944 adding 'omicverse/external/NaiveDE/simulate.py' 2026-04-19T09:20:08,947 adding 'omicverse/external/PROST/PROST.py' 2026-04-19T09:20:08,948 adding 'omicverse/external/PROST/__init__.py' 2026-04-19T09:20:08,950 adding 'omicverse/external/PROST/calculate_PI.py' 2026-04-19T09:20:08,952 adding 'omicverse/external/PROST/layers.py' 2026-04-19T09:20:08,953 adding 'omicverse/external/PROST/model.py' 2026-04-19T09:20:08,955 adding 'omicverse/external/PROST/plot.py' 2026-04-19T09:20:08,959 adding 'omicverse/external/PROST/utils.py' 2026-04-19T09:20:08,961 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-04-19T09:20:08,963 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-04-19T09:20:08,965 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-04-19T09:20:08,967 adding 'omicverse/external/PyWGCNA/utils.py' 2026-04-19T09:20:08,989 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-04-19T09:20:08,993 adding 'omicverse/external/SEACells/__init__.py' 2026-04-19T09:20:08,994 adding 'omicverse/external/SEACells/accessibility.py' 2026-04-19T09:20:08,996 adding 'omicverse/external/SEACells/build_graph.py' 2026-04-19T09:20:08,998 adding 'omicverse/external/SEACells/core.py' 2026-04-19T09:20:09,001 adding 'omicverse/external/SEACells/cpu.py' 2026-04-19T09:20:09,004 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-04-19T09:20:09,006 adding 'omicverse/external/SEACells/domainadapt.py' 2026-04-19T09:20:09,007 adding 'omicverse/external/SEACells/evaluate.py' 2026-04-19T09:20:09,010 adding 'omicverse/external/SEACells/genescores.py' 2026-04-19T09:20:09,013 adding 'omicverse/external/SEACells/gpu.py' 2026-04-19T09:20:09,015 adding 'omicverse/external/SEACells/plot.py' 2026-04-19T09:20:09,016 adding 'omicverse/external/SEACells/preprocess.py' 2026-04-19T09:20:09,018 adding 'omicverse/external/SEACells/tfactivity.py' 2026-04-19T09:20:09,020 adding 'omicverse/external/SEACells/utils.py' 2026-04-19T09:20:09,021 adding 'omicverse/external/SEACells/version.py' 2026-04-19T09:20:09,023 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-04-19T09:20:09,024 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-04-19T09:20:09,026 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-04-19T09:20:09,027 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-04-19T09:20:09,029 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-04-19T09:20:09,031 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-04-19T09:20:09,034 adding 'omicverse/external/STAligner/ST_utils.py' 2026-04-19T09:20:09,036 adding 'omicverse/external/STAligner/gat_conv.py' 2026-04-19T09:20:09,037 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-04-19T09:20:09,039 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-04-19T09:20:09,041 adding 'omicverse/external/STT/__init__.py' 2026-04-19T09:20:09,043 adding 'omicverse/external/STT/pl/__init__.py' 2026-04-19T09:20:09,046 adding 'omicverse/external/STT/pl/_networks.py' 2026-04-19T09:20:09,048 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-04-19T09:20:09,050 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-04-19T09:20:09,052 adding 'omicverse/external/STT/tl/__init__.py' 2026-04-19T09:20:09,053 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-04-19T09:20:09,056 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-04-19T09:20:09,057 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-04-19T09:20:09,059 adding 'omicverse/external/SpatialDE/__init__.py' 2026-04-19T09:20:09,060 adding 'omicverse/external/SpatialDE/aeh.py' 2026-04-19T09:20:09,062 adding 'omicverse/external/SpatialDE/aha.py' 2026-04-19T09:20:09,063 adding 'omicverse/external/SpatialDE/anndata.py' 2026-04-19T09:20:09,066 adding 'omicverse/external/SpatialDE/base.py' 2026-04-19T09:20:09,067 adding 'omicverse/external/SpatialDE/plot.py' 2026-04-19T09:20:09,069 adding 'omicverse/external/SpatialDE/util.py' 2026-04-19T09:20:09,070 adding 'omicverse/external/VIA/__init__.py' 2026-04-19T09:20:09,092 adding 'omicverse/external/VIA/core.py' 2026-04-19T09:20:09,095 adding 'omicverse/external/VIA/datasets_via.py' 2026-04-19T09:20:09,120 adding 'omicverse/external/VIA/plotting_via.py' 2026-04-19T09:20:09,146 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-04-19T09:20:09,160 adding 'omicverse/external/VIA/utils_via.py' 2026-04-19T09:20:09,163 adding 'omicverse/external/VIA/windmap.py' 2026-04-19T09:20:09,164 adding 'omicverse/external/bin2cell/__init__.py' 2026-04-19T09:20:09,178 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-04-19T09:20:09,181 adding 'omicverse/external/bulk2single/__init__.py' 2026-04-19T09:20:09,183 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-04-19T09:20:09,185 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-04-19T09:20:09,186 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-04-19T09:20:09,188 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-04-19T09:20:09,190 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-04-19T09:20:09,191 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-04-19T09:20:09,193 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-04-19T09:20:09,194 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-04-19T09:20:09,197 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-04-19T09:20:09,198 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-04-19T09:20:09,200 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-04-19T09:20:09,201 adding 'omicverse/external/bulk2single/pybayesprism/optim.py' 2026-04-19T09:20:09,204 adding 'omicverse/external/bulk2single/pybayesprism/prism.py' 2026-04-19T09:20:09,206 adding 'omicverse/external/bulk2single/pybayesprism/process_input.py' 2026-04-19T09:20:09,207 adding 'omicverse/external/bulk2single/pybayesprism/references.py' 2026-04-19T09:20:09,208 adding 'omicverse/external/bulk2single/pybayesprism/run.py' 2026-04-19T09:20:09,209 adding 'omicverse/external/bulk2single/pybayesprism/theta_post.py' 2026-04-19T09:20:09,906 adding 'omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt' 2026-04-19T09:20:09,958 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt' 2026-04-19T09:20:09,984 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt' 2026-04-19T09:20:09,987 adding 'omicverse/external/bulk2single/scSemiProfiler/__init__.py' 2026-04-19T09:20:09,992 adding 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2026-04-19T09:20:16,006 adding 'omicverse/utils/ovagent/analysis_executor.py' 2026-04-19T09:20:16,010 adding 'omicverse/utils/ovagent/analysis_sandbox.py' 2026-04-19T09:20:16,011 adding 'omicverse/utils/ovagent/analysis_transformer.py' 2026-04-19T09:20:16,014 adding 'omicverse/utils/ovagent/auth.py' 2026-04-19T09:20:16,016 adding 'omicverse/utils/ovagent/bootstrap.py' 2026-04-19T09:20:16,021 adding 'omicverse/utils/ovagent/codegen_pipeline.py' 2026-04-19T09:20:16,022 adding 'omicverse/utils/ovagent/codegen_tool_facade.py' 2026-04-19T09:20:16,025 adding 'omicverse/utils/ovagent/context_budget.py' 2026-04-19T09:20:16,027 adding 'omicverse/utils/ovagent/event_stream.py' 2026-04-19T09:20:16,029 adding 'omicverse/utils/ovagent/permission_policy.py' 2026-04-19T09:20:16,031 adding 'omicverse/utils/ovagent/prompt_builder.py' 2026-04-19T09:20:16,033 adding 'omicverse/utils/ovagent/prompt_templates.py' 2026-04-19T09:20:16,035 adding 'omicverse/utils/ovagent/protocol.py' 2026-04-19T09:20:16,039 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'omicverse/utils/ovagent/tool_scheduler.py' 2026-04-19T09:20:16,067 adding 'omicverse/utils/ovagent/turn_artifacts.py' 2026-04-19T09:20:16,072 adding 'omicverse/utils/ovagent/turn_controller.py' 2026-04-19T09:20:16,074 adding 'omicverse/utils/ovagent/turn_followup.py' 2026-04-19T09:20:16,076 adding 'omicverse/utils/ovagent/workflow.py' 2026-04-19T09:20:16,080 adding 'omicverse/utils/verifier/README.md' 2026-04-19T09:20:16,081 adding 'omicverse/utils/verifier/__init__.py' 2026-04-19T09:20:16,082 adding 'omicverse/utils/verifier/__main__.py' 2026-04-19T09:20:16,085 adding 'omicverse/utils/verifier/cli.py' 2026-04-19T09:20:16,087 adding 'omicverse/utils/verifier/data_structures.py' 2026-04-19T09:20:16,089 adding 'omicverse/utils/verifier/end_to_end_verifier.py' 2026-04-19T09:20:16,092 adding 'omicverse/utils/verifier/llm_skill_selector.py' 2026-04-19T09:20:16,094 adding 'omicverse/utils/verifier/notebook_task_extractor.py' 2026-04-19T09:20:16,096 adding 'omicverse/utils/verifier/skill_description_loader.py' 2026-04-19T09:20:16,098 adding 'omicverse/utils/verifier/skill_description_quality.py' 2026-04-19T09:20:16,106 adding 'omicverse-2.1.2.dist-info/licenses/LICENSE' 2026-04-19T09:20:16,115 adding 'omicverse-2.1.2.dist-info/METADATA' 2026-04-19T09:20:16,117 adding 'omicverse-2.1.2.dist-info/WHEEL' 2026-04-19T09:20:16,117 adding 'omicverse-2.1.2.dist-info/entry_points.txt' 2026-04-19T09:20:16,118 adding 'omicverse-2.1.2.dist-info/top_level.txt' 2026-04-19T09:20:16,140 adding 'omicverse-2.1.2.dist-info/RECORD' 2026-04-19T09:20:16,345 removing build/bdist.linux-armv7l/wheel 2026-04-19T09:20:16,885 Building wheel for omicverse (pyproject.toml): finished with status 'done' 2026-04-19T09:20:17,195 Created wheel for omicverse: filename=omicverse-2.1.2-py3-none-any.whl size=13035027 sha256=78fef7b4dbbbcb4748fc910d9d56c0a43466dac4c0ef3720961156304715f9be 2026-04-19T09:20:17,197 Stored in directory: /tmp/pip-ephem-wheel-cache-0bnrwcps/wheels/17/3b/29/640faa4cd5fc39243953409cf735d09705cdff80aad844fae4 2026-04-19T09:20:17,282 Successfully built omicverse 2026-04-19T09:20:17,601 Removed build tracker: '/tmp/pip-build-tracker-1humspwf'