2026-04-19T17:12:25,072 Created temporary directory: /tmp/pip-ephem-wheel-cache-x8kw3nce 2026-04-19T17:12:25,074 Created temporary directory: /tmp/pip-build-tracker-6qz_mq2p 2026-04-19T17:12:25,075 Initialized build tracking at /tmp/pip-build-tracker-6qz_mq2p 2026-04-19T17:12:25,075 Created build tracker: /tmp/pip-build-tracker-6qz_mq2p 2026-04-19T17:12:25,076 Entered build tracker: /tmp/pip-build-tracker-6qz_mq2p 2026-04-19T17:12:25,077 Created temporary directory: /tmp/pip-wheel-62nrejqf 2026-04-19T17:12:25,080 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-19T17:12:25,082 Created temporary directory: /tmp/pip-ephem-wheel-cache-vg0er048 2026-04-19T17:12:25,106 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-19T17:12:25,110 2 location(s) to search for versions of pirlygenes: 2026-04-19T17:12:25,110 * https://pypi.org/simple/pirlygenes/ 2026-04-19T17:12:25,110 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T17:12:25,111 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-19T17:12:25,112 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-19T17:12:25,113 Found index url https://pypi.org/simple 2026-04-19T17:12:25,283 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-19T17:12:25,321 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,322 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-19T17:12:25,323 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,324 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-19T17:12:25,324 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,326 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-19T17:12:25,326 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,327 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from 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https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-19T17:12:25,331 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,332 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-19T17:12:25,333 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,334 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-19T17:12:25,334 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,335 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-19T17:12:25,336 Skipping link: No binaries permitted for pirlygenes: 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2026-04-19T17:12:25,340 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,340 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-19T17:12:25,341 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,342 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-19T17:12:25,346 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,347 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-19T17:12:25,347 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,348 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-19T17:12:25,349 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,350 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-19T17:12:25,351 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,352 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-19T17:12:25,352 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,353 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-19T17:12:25,354 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,355 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-19T17:12:25,356 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,357 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-19T17:12:25,360 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,361 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-19T17:12:25,362 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/a5/be/bfad4d208cbfb64ec3ecf56f07d0e953ea9bdcc408d78eb6ad0bd8d258a9/pirlygenes-4.13.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.13.0 2026-04-19T17:12:25,475 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/e9/64/266ad83fc072e5407baa2dabed6d8b40637a5006c75fcfa36beb4632195b/pirlygenes-4.14.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,476 Found link https://files.pythonhosted.org/packages/5c/26/ab1b474a0a7bc1d6e15dc5a3cbbbe35f00c869b13309c9090c9d8de78f61/pirlygenes-4.14.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.14.0 2026-04-19T17:12:25,477 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/63/37/6fa2a9c872f19b7c1f7fce6328cb29f93c210f2667e0e5d9c5c53da8f79e/pirlygenes-4.15.0-py3-none-any.whl (from 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2026-04-19T17:12:25,483 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/af/ef/753f488c56dd7740f7d5c81d9f2162ffd19fd44cba41ec0fd61e9ac8ba17/pirlygenes-4.19.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,484 Found link https://files.pythonhosted.org/packages/27/68/894cd1c160ff13761f9bc880419e446b378889f2cfe07aa011bc11a0c6fe/pirlygenes-4.19.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.19.0 2026-04-19T17:12:25,485 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/93/d5/4fac586ae157c36913be7bc83dd9ff73da44669a06fc6eebbc2ea8aa162a/pirlygenes-4.20.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,485 Found link https://files.pythonhosted.org/packages/61/a3/b04c01eab8db62001abfec8db72205ba73ee8b388a82f7fb0c1519e4488f/pirlygenes-4.20.0.tar.gz (from 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https://files.pythonhosted.org/packages/3c/63/246b845b7227c37a250db7fb0857c042afc2a189657900b0bfee25cd573b/pirlygenes-4.21.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.21.0 2026-04-19T17:12:25,489 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/c6/1c792c9835b86e15182150ee74b4b91b1c8a11aeff74e062b9f91b29b8f3/pirlygenes-4.22.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,490 Found link https://files.pythonhosted.org/packages/29/23/9b067fb0f43a46beeff94705f06a62eddf2d2ea07d603f1b6bff314ee825/pirlygenes-4.22.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.22.0 2026-04-19T17:12:25,491 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/25/0b/26eb662d30b0cfe08229ad41bfb4e3cc8176c2de3291472fc27a2b3c454a/pirlygenes-4.22.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,492 Found link https://files.pythonhosted.org/packages/0b/79/0c209c92cceac9c5070045cf13504a267981edfbe6c77bf9baf447cf8ae5/pirlygenes-4.22.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.22.1 2026-04-19T17:12:25,493 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9c/c3/f24c74464fa2bbbae8a8df97550dbcb11ed188ef84fa5fdf834534cb2103/pirlygenes-4.22.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,493 Found link https://files.pythonhosted.org/packages/1e/67/7a8a35df0a3f6943c870a14ebbdc458fa6b94ae07abc808b498a62bf59ab/pirlygenes-4.22.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.22.2 2026-04-19T17:12:25,494 Skipping link: No binaries permitted for pirlygenes: 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2026-04-19T17:12:25,497 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T17:12:25,498 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T17:12:25,499 Found index url https://www.piwheels.org/simple 2026-04-19T17:12:25,689 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-19T17:12:25,718 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.22.3-py3-none-any.whl#sha256=576b0ef86add2d3ff8dd461912a91f456f48dd13eea4362abd9a78bb33cbbab8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,719 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.22.2-py3-none-any.whl#sha256=068d6de0fe45af1beb3d4df47fb8e64b3fe162fa04d249a7ac9efbe214e7ef22 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,720 Skipping link: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.8.0-py3-none-any.whl#sha256=8647e92b624b8f8e566be6ac2fe3db4da2c918e4b50e72f19c44ef7091244be9 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,761 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.7.0-py3-none-any.whl#sha256=314bf8c48fa380a0f57c6db57a0cc51ff515eb8bcbe76f35efcd288708c8db22 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,761 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.6.0-py3-none-any.whl#sha256=102d759271fe20631692f659a53b89532340331dd43449ebd9b2ecb9b1227904 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,762 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.2.0-py3-none-any.whl#sha256=85fead9c44e027431aae1b82b31093d2cb7006e21cd01d33b7445eb8c9948f40 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,764 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.1.0-py3-none-any.whl#sha256=4251fa90f4f8fb242c184fedde61659c34349d8fc56ee826de4488e5c5c11039 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,765 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-3.0.0-py3-none-any.whl#sha256=40b6b1094f878a48f7ccf12418b061fe33d3a8fd773093523159c983af518352 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,765 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.14.0-py3-none-any.whl#sha256=057ce48582bffd44e37684068b1e64e750349609703d93d80efa875cb9b00d12 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,766 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.13.0-py3-none-any.whl#sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,767 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,767 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,768 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.10.0-py3-none-any.whl#sha256=393a743c2c0abdcbb8f787acfe60892c2335aa4a6be80038396dc5b27473274c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,768 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.9.0-py3-none-any.whl#sha256=ca97e53c115bc9d06958ccce0494c60d942faba3dd044564ca15284523b8ec19 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,768 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.1-py3-none-any.whl#sha256=1b346af13b190e47650615724130b80dc1044b25269d3603013a7436e13f4ab6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,769 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,770 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,770 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,771 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,771 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,772 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,775 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,775 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,776 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,778 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,778 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,779 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,779 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,780 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,780 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,781 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-19T17:12:25,782 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-19T17:12:25,782 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-19T17:12:25,816 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-19T17:12:25,838 Collecting pirlygenes==4.23.0 2026-04-19T17:12:25,840 Created temporary directory: /tmp/pip-unpack-8041cyww 2026-04-19T17:12:26,093 Downloading pirlygenes-4.23.0.tar.gz (21.7 MB) 2026-04-19T17:12:30,418 Added pirlygenes==4.23.0 from https://files.pythonhosted.org/packages/af/43/8ef3d661632109ab1b35ef4dcb8bfc3ad26fa44723f947dde519c6afebe1/pirlygenes-4.23.0.tar.gz to build tracker '/tmp/pip-build-tracker-6qz_mq2p' 2026-04-19T17:12:30,424 Created temporary directory: /tmp/pip-build-env-767vvhur 2026-04-19T17:12:30,428 Installing build dependencies: started 2026-04-19T17:12:30,430 Running command pip subprocess to install build dependencies 2026-04-19T17:12:31,592 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-19T17:12:32,003 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-19T17:12:32,026 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-19T17:12:33,883 Collecting setuptools>=60 2026-04-19T17:12:33,957 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-19T17:12:34,352 Collecting setuptools-scm>=8.0 2026-04-19T17:12:34,373 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-19T17:12:34,467 Collecting vcs-versioning>=1.0.0.dev0 2026-04-19T17:12:34,483 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-19T17:12:34,670 Collecting packaging>=20 2026-04-19T17:12:34,688 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-19T17:12:37,715 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-19T17:12:41,668 Creating /tmp/pip-build-env-767vvhur/overlay/local/bin 2026-04-19T17:12:41,671 changing mode of /tmp/pip-build-env-767vvhur/overlay/local/bin/vcs-versioning to 755 2026-04-19T17:12:41,783 changing mode of /tmp/pip-build-env-767vvhur/overlay/local/bin/setuptools-scm to 755 2026-04-19T17:12:41,811 Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-19T17:12:42,094 Installing build dependencies: finished with status 'done' 2026-04-19T17:12:42,110 Getting requirements to build wheel: started 2026-04-19T17:12:42,111 Running command Getting requirements to build wheel 2026-04-19T17:12:42,796 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T17:12:42,908 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:42,909 !! 2026-04-19T17:12:42,910 ******************************************************************************** 2026-04-19T17:12:42,911 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:42,912 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:42,913 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:42,913 ******************************************************************************** 2026-04-19T17:12:42,914 !! 2026-04-19T17:12:42,915 dist._finalize_license_expression() 2026-04-19T17:12:42,915 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:42,916 !! 2026-04-19T17:12:42,917 ******************************************************************************** 2026-04-19T17:12:42,917 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:42,918 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:42,919 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:42,919 ******************************************************************************** 2026-04-19T17:12:42,920 !! 2026-04-19T17:12:42,921 self._finalize_license_expression() 2026-04-19T17:12:42,923 running egg_info 2026-04-19T17:12:42,932 writing pirlygenes.egg-info/PKG-INFO 2026-04-19T17:12:42,938 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-19T17:12:42,939 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-19T17:12:42,941 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-19T17:12:42,943 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-19T17:12:42,988 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T17:12:42,989 return get_active_overrides().subprocess_timeout 2026-04-19T17:12:42,996 listing git files failed - pretending there aren't any 2026-04-19T17:12:43,005 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:43,018 adding license file 'LICENSE' 2026-04-19T17:12:43,026 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:43,130 Getting requirements to build wheel: finished with status 'done' 2026-04-19T17:12:43,133 Created temporary directory: /tmp/pip-modern-metadata-ci2jopzl 2026-04-19T17:12:43,136 Preparing metadata (pyproject.toml): started 2026-04-19T17:12:43,137 Running command Preparing metadata (pyproject.toml) 2026-04-19T17:12:43,763 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T17:12:43,869 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:43,870 !! 2026-04-19T17:12:43,871 ******************************************************************************** 2026-04-19T17:12:43,872 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:43,873 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:43,875 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:43,875 ******************************************************************************** 2026-04-19T17:12:43,876 !! 2026-04-19T17:12:43,877 dist._finalize_license_expression() 2026-04-19T17:12:43,877 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:43,878 !! 2026-04-19T17:12:43,879 ******************************************************************************** 2026-04-19T17:12:43,880 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:43,881 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:43,881 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:43,882 ******************************************************************************** 2026-04-19T17:12:43,883 !! 2026-04-19T17:12:43,883 self._finalize_license_expression() 2026-04-19T17:12:43,885 running dist_info 2026-04-19T17:12:43,900 creating /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info 2026-04-19T17:12:43,901 writing /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/PKG-INFO 2026-04-19T17:12:43,906 writing dependency_links to /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/dependency_links.txt 2026-04-19T17:12:43,908 writing entry points to /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/entry_points.txt 2026-04-19T17:12:43,910 writing requirements to /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/requires.txt 2026-04-19T17:12:43,911 writing top-level names to /tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/top_level.txt 2026-04-19T17:12:43,912 writing manifest file '/tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:43,953 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T17:12:43,953 return get_active_overrides().subprocess_timeout 2026-04-19T17:12:43,960 listing git files failed - pretending there aren't any 2026-04-19T17:12:43,968 reading manifest file '/tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:43,970 adding license file 'LICENSE' 2026-04-19T17:12:43,975 writing manifest file '/tmp/pip-modern-metadata-ci2jopzl/pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:43,976 creating '/tmp/pip-modern-metadata-ci2jopzl/pirlygenes-4.23.0.dist-info' 2026-04-19T17:12:44,112 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-19T17:12:44,119 Source in /tmp/pip-wheel-62nrejqf/pirlygenes_fa9a60d443c24e96a1ecd492e0ac2995 has version 4.23.0, which satisfies requirement pirlygenes==4.23.0 from https://files.pythonhosted.org/packages/af/43/8ef3d661632109ab1b35ef4dcb8bfc3ad26fa44723f947dde519c6afebe1/pirlygenes-4.23.0.tar.gz 2026-04-19T17:12:44,120 Removed pirlygenes==4.23.0 from https://files.pythonhosted.org/packages/af/43/8ef3d661632109ab1b35ef4dcb8bfc3ad26fa44723f947dde519c6afebe1/pirlygenes-4.23.0.tar.gz from build tracker '/tmp/pip-build-tracker-6qz_mq2p' 2026-04-19T17:12:44,129 Created temporary directory: /tmp/pip-unpack-zorgfe2i 2026-04-19T17:12:44,130 Building wheels for collected packages: pirlygenes 2026-04-19T17:12:44,134 Created temporary directory: /tmp/pip-wheel-69bxw277 2026-04-19T17:12:44,135 Destination directory: /tmp/pip-wheel-69bxw277 2026-04-19T17:12:44,137 Building wheel for pirlygenes (pyproject.toml): started 2026-04-19T17:12:44,138 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-19T17:12:44,753 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-19T17:12:44,854 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:44,854 !! 2026-04-19T17:12:44,856 ******************************************************************************** 2026-04-19T17:12:44,856 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:44,857 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:44,858 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:44,859 ******************************************************************************** 2026-04-19T17:12:44,860 !! 2026-04-19T17:12:44,860 dist._finalize_license_expression() 2026-04-19T17:12:44,861 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-19T17:12:44,861 !! 2026-04-19T17:12:44,862 ******************************************************************************** 2026-04-19T17:12:44,862 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-19T17:12:44,864 License :: OSI Approved :: Apache Software License 2026-04-19T17:12:44,865 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-19T17:12:44,865 ******************************************************************************** 2026-04-19T17:12:44,866 !! 2026-04-19T17:12:44,866 self._finalize_license_expression() 2026-04-19T17:12:44,867 running bdist_wheel 2026-04-19T17:12:44,890 running build 2026-04-19T17:12:44,890 running build_py 2026-04-19T17:12:44,893 creating build/lib/pirlygenes 2026-04-19T17:12:44,895 copying pirlygenes/plot_therapy.py -> build/lib/pirlygenes 2026-04-19T17:12:44,898 copying pirlygenes/plot_tumor_expr.py -> build/lib/pirlygenes 2026-04-19T17:12:44,902 copying pirlygenes/confidence.py -> build/lib/pirlygenes 2026-04-19T17:12:44,904 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-19T17:12:44,907 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-19T17:12:44,910 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-19T17:12:44,914 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-19T17:12:44,917 copying pirlygenes/plot_scatter.py -> build/lib/pirlygenes 2026-04-19T17:12:44,920 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-19T17:12:44,922 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-19T17:12:44,924 copying pirlygenes/therapy_response.py -> build/lib/pirlygenes 2026-04-19T17:12:44,927 copying pirlygenes/brief.py -> build/lib/pirlygenes 2026-04-19T17:12:44,930 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-19T17:12:44,932 copying pirlygenes/cohort_deconvolve.py -> build/lib/pirlygenes 2026-04-19T17:12:44,934 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-19T17:12:44,936 copying pirlygenes/plot_strip.py -> build/lib/pirlygenes 2026-04-19T17:12:44,939 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-19T17:12:44,941 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-19T17:12:44,943 copying pirlygenes/provenance.py -> build/lib/pirlygenes 2026-04-19T17:12:44,946 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-19T17:12:44,948 copying pirlygenes/plot_target_deep_dive.py -> build/lib/pirlygenes 2026-04-19T17:12:44,951 copying pirlygenes/format.py -> build/lib/pirlygenes 2026-04-19T17:12:44,954 copying pirlygenes/plot_subtype_signature.py -> build/lib/pirlygenes 2026-04-19T17:12:44,956 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-19T17:12:44,958 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-19T17:12:44,962 copying pirlygenes/sample_context.py -> build/lib/pirlygenes 2026-04-19T17:12:44,965 copying pirlygenes/tcga_decompose.py -> build/lib/pirlygenes 2026-04-19T17:12:44,968 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-19T17:12:44,973 copying pirlygenes/plot_embedding.py -> build/lib/pirlygenes 2026-04-19T17:12:44,977 copying pirlygenes/healthy_vs_tumor.py -> build/lib/pirlygenes 2026-04-19T17:12:44,980 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-19T17:12:44,982 running egg_info 2026-04-19T17:12:44,997 writing pirlygenes.egg-info/PKG-INFO 2026-04-19T17:12:45,002 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-19T17:12:45,003 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-19T17:12:45,005 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-19T17:12:45,007 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-19T17:12:45,039 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-19T17:12:45,040 return get_active_overrides().subprocess_timeout 2026-04-19T17:12:45,047 listing git files failed - pretending there aren't any 2026-04-19T17:12:45,054 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:45,063 adding license file 'LICENSE' 2026-04-19T17:12:45,071 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-19T17:12:45,075 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-19T17:12:45,076 !! 2026-04-19T17:12:45,076 ******************************************************************************** 2026-04-19T17:12:45,077 ############################ 2026-04-19T17:12:45,077 # Package would be ignored # 2026-04-19T17:12:45,078 ############################ 2026-04-19T17:12:45,078 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-19T17:12:45,079 but it is absent from setuptools' `packages` configuration. 2026-04-19T17:12:45,080 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-19T17:12:45,081 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-19T17:12:45,081 to the `packages` configuration field. 2026-04-19T17:12:45,082 Alternatively, you can also rely on setuptools' discovery methods 2026-04-19T17:12:45,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-19T17:12:45,084 instead of `find_packages(...)`/`find:`). 2026-04-19T17:12:45,085 You can read more about "package discovery" on setuptools documentation page: 2026-04-19T17:12:45,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-19T17:12:45,087 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-19T17:12:45,087 already explicitly excluding 'pirlygenes.data' via 2026-04-19T17:12:45,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-19T17:12:45,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-19T17:12:45,089 combination with a more fine grained `package-data` configuration. 2026-04-19T17:12:45,090 You can read more about "package data files" on setuptools documentation page: 2026-04-19T17:12:45,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-19T17:12:45,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-19T17:12:45,093 even if it does not contain any `.py` files. 2026-04-19T17:12:45,093 On the other hand, currently there is no concept of package data 2026-04-19T17:12:45,094 directory, all directories are treated like packages. 2026-04-19T17:12:45,094 ******************************************************************************** 2026-04-19T17:12:45,096 !! 2026-04-19T17:12:45,096 check.warn(importable) 2026-04-19T17:12:45,097 /tmp/pip-build-env-767vvhur/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-19T17:12:45,098 !! 2026-04-19T17:12:45,099 ******************************************************************************** 2026-04-19T17:12:45,099 ############################ 2026-04-19T17:12:45,100 # Package would be ignored # 2026-04-19T17:12:45,100 ############################ 2026-04-19T17:12:45,100 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-19T17:12:45,101 but it is absent from setuptools' `packages` configuration. 2026-04-19T17:12:45,102 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-19T17:12:45,103 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-19T17:12:45,103 to the `packages` configuration field. 2026-04-19T17:12:45,104 Alternatively, you can also rely on setuptools' discovery methods 2026-04-19T17:12:45,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-19T17:12:45,105 instead of `find_packages(...)`/`find:`). 2026-04-19T17:12:45,106 You can read more about "package discovery" on setuptools documentation page: 2026-04-19T17:12:45,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-19T17:12:45,108 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-19T17:12:45,109 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-19T17:12:45,109 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-19T17:12:45,110 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-19T17:12:45,110 combination with a more fine grained `package-data` configuration. 2026-04-19T17:12:45,111 You can read more about "package data files" on setuptools documentation page: 2026-04-19T17:12:45,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-19T17:12:45,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-19T17:12:45,114 even if it does not contain any `.py` files. 2026-04-19T17:12:45,114 On the other hand, currently there is no concept of package data 2026-04-19T17:12:45,115 directory, all directories are treated like packages. 2026-04-19T17:12:45,115 ******************************************************************************** 2026-04-19T17:12:45,116 !! 2026-04-19T17:12:45,117 check.warn(importable) 2026-04-19T17:12:45,117 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-19T17:12:45,118 creating build/lib/pirlygenes/data 2026-04-19T17:12:45,118 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,119 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,119 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,120 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,120 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,121 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,121 copying pirlygenes/data/artifact-expectations.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,122 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,123 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,124 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,127 copying pirlygenes/data/cancer-family-panels.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,129 copying pirlygenes/data/cancer-key-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,132 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,135 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,139 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,141 copying pirlygenes/data/cancer-type-registry.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,144 copying pirlygenes/data/culture-stress-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,146 copying pirlygenes/data/degradation-gene-pairs.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,148 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,151 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,153 copying pirlygenes/data/extra-tx-mappings.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,155 copying pirlygenes/data/ffpe-sensitive-markers.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,158 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,160 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,162 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,277 copying pirlygenes/data/lineage-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,279 copying pirlygenes/data/mitochondrial-genes.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,282 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,284 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,460 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,462 copying pirlygenes/data/subtype-deconvolved-expression.csv.gz -> build/lib/pirlygenes/data 2026-04-19T17:12:45,607 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,614 copying pirlygenes/data/tcga-deconvolved-expression.csv.gz -> build/lib/pirlygenes/data 2026-04-19T17:12:45,696 copying pirlygenes/data/therapy-response-signatures.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,699 copying pirlygenes/data/tme-markers.csv -> build/lib/pirlygenes/data 2026-04-19T17:12:45,701 creating build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,702 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,704 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,707 copying pirlygenes/decomposition/panels.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,710 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,713 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,715 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-19T17:12:45,733 installing to build/bdist.linux-armv7l/wheel 2026-04-19T17:12:45,734 running install 2026-04-19T17:12:45,757 running install_lib 2026-04-19T17:12:45,764 creating build/bdist.linux-armv7l/wheel 2026-04-19T17:12:45,767 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-19T17:12:45,768 copying build/lib/pirlygenes/plot_therapy.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,771 copying build/lib/pirlygenes/plot_tumor_expr.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,775 copying build/lib/pirlygenes/confidence.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,777 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,779 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,782 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,785 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,787 copying build/lib/pirlygenes/plot_scatter.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,790 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,792 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,794 copying build/lib/pirlygenes/therapy_response.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,797 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,799 copying build/lib/pirlygenes/brief.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,801 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,804 copying build/lib/pirlygenes/cohort_deconvolve.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,806 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,808 copying build/lib/pirlygenes/plot_strip.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,810 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,812 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,814 copying build/lib/pirlygenes/provenance.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,817 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:45,820 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-19T17:12:45,821 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:45,995 copying build/lib/pirlygenes/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:45,996 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:45,999 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,006 copying build/lib/pirlygenes/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,008 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,011 copying build/lib/pirlygenes/data/tme-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,013 copying build/lib/pirlygenes/data/tcga-deconvolved-expression.csv.gz -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,086 copying build/lib/pirlygenes/data/ffpe-sensitive-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,088 copying build/lib/pirlygenes/data/degradation-gene-pairs.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,090 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,094 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,096 copying build/lib/pirlygenes/data/cancer-family-panels.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,098 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,100 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,103 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,105 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,219 copying build/lib/pirlygenes/data/subtype-deconvolved-expression.csv.gz -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,378 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,380 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,382 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,384 copying build/lib/pirlygenes/data/culture-stress-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,386 copying build/lib/pirlygenes/data/artifact-expectations.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,388 copying build/lib/pirlygenes/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,391 copying build/lib/pirlygenes/data/therapy-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,394 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,396 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,398 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,402 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,404 copying build/lib/pirlygenes/data/lineage-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,406 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,408 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,410 copying build/lib/pirlygenes/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,413 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,415 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-19T17:12:46,418 copying build/lib/pirlygenes/plot_target_deep_dive.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,421 copying build/lib/pirlygenes/format.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,423 copying build/lib/pirlygenes/plot_subtype_signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,425 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,428 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,431 copying build/lib/pirlygenes/sample_context.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,434 copying build/lib/pirlygenes/tcga_decompose.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,437 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-19T17:12:46,438 copying build/lib/pirlygenes/decomposition/panels.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,441 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,444 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,446 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,449 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,451 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-19T17:12:46,454 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,460 copying build/lib/pirlygenes/plot_embedding.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,464 copying build/lib/pirlygenes/healthy_vs_tumor.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,466 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-19T17:12:46,469 running install_egg_info 2026-04-19T17:12:46,476 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-4.23.0-py3.11.egg-info 2026-04-19T17:12:46,489 running install_scripts 2026-04-19T17:12:46,502 creating build/bdist.linux-armv7l/wheel/pirlygenes-4.23.0.dist-info/WHEEL 2026-04-19T17:12:46,505 creating '/tmp/pip-wheel-69bxw277/.tmp-do2v67yy/pirlygenes-4.23.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-19T17:12:46,508 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-19T17:12:46,509 adding 'pirlygenes/__init__.py' 2026-04-19T17:12:46,511 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-19T17:12:46,514 adding 'pirlygenes/brief.py' 2026-04-19T17:12:46,535 adding 'pirlygenes/cli.py' 2026-04-19T17:12:46,538 adding 'pirlygenes/cohort_deconvolve.py' 2026-04-19T17:12:46,539 adding 'pirlygenes/common.py' 2026-04-19T17:12:46,541 adding 'pirlygenes/confidence.py' 2026-04-19T17:12:46,543 adding 'pirlygenes/format.py' 2026-04-19T17:12:46,545 adding 'pirlygenes/gene_ids.py' 2026-04-19T17:12:46,546 adding 'pirlygenes/gene_names.py' 2026-04-19T17:12:46,553 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-19T17:12:46,557 adding 'pirlygenes/healthy_vs_tumor.py' 2026-04-19T17:12:46,558 adding 'pirlygenes/load_dataset.py' 2026-04-19T17:12:46,563 adding 'pirlygenes/load_expression.py' 2026-04-19T17:12:46,565 adding 'pirlygenes/plot.py' 2026-04-19T17:12:46,568 adding 'pirlygenes/plot_data_helpers.py' 2026-04-19T17:12:46,575 adding 'pirlygenes/plot_embedding.py' 2026-04-19T17:12:46,578 adding 'pirlygenes/plot_scatter.py' 2026-04-19T17:12:46,580 adding 'pirlygenes/plot_strip.py' 2026-04-19T17:12:46,582 adding 'pirlygenes/plot_subtype_signature.py' 2026-04-19T17:12:46,584 adding 'pirlygenes/plot_target_deep_dive.py' 2026-04-19T17:12:46,591 adding 'pirlygenes/plot_therapy.py' 2026-04-19T17:12:46,600 adding 'pirlygenes/plot_tumor_expr.py' 2026-04-19T17:12:46,602 adding 'pirlygenes/provenance.py' 2026-04-19T17:12:46,609 adding 'pirlygenes/sample_context.py' 2026-04-19T17:12:46,612 adding 'pirlygenes/sample_quality.py' 2026-04-19T17:12:46,614 adding 'pirlygenes/tcga_decompose.py' 2026-04-19T17:12:46,616 adding 'pirlygenes/therapy_response.py' 2026-04-19T17:12:46,618 adding 'pirlygenes/transcript_to_gene.py' 2026-04-19T17:12:46,629 adding 'pirlygenes/tumor_purity.py' 2026-04-19T17:12:46,631 adding 'pirlygenes/version.py' 2026-04-19T17:12:46,634 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-19T17:12:46,638 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-19T17:12:46,639 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-19T17:12:46,641 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-19T17:12:46,642 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-19T17:12:46,645 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-19T17:12:46,647 adding 'pirlygenes/data/artifact-expectations.csv' 2026-04-19T17:12:46,648 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-19T17:12:46,653 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-19T17:12:46,656 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-19T17:12:46,657 adding 'pirlygenes/data/cancer-family-panels.csv' 2026-04-19T17:12:46,668 adding 'pirlygenes/data/cancer-key-genes.csv' 2026-04-19T17:12:46,670 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-19T17:12:46,676 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-19T17:12:46,679 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-19T17:12:46,682 adding 'pirlygenes/data/cancer-type-registry.csv' 2026-04-19T17:12:46,683 adding 'pirlygenes/data/culture-stress-genes.csv' 2026-04-19T17:12:46,685 adding 'pirlygenes/data/degradation-gene-pairs.csv' 2026-04-19T17:12:46,687 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-19T17:12:46,689 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-19T17:12:46,690 adding 'pirlygenes/data/extra-tx-mappings.csv' 2026-04-19T17:12:46,692 adding 'pirlygenes/data/ffpe-sensitive-markers.csv' 2026-04-19T17:12:46,693 adding 'pirlygenes/data/gene-sets.csv' 2026-04-19T17:12:46,694 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-19T17:12:49,323 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-19T17:12:49,371 adding 'pirlygenes/data/lineage-genes.csv' 2026-04-19T17:12:49,373 adding 'pirlygenes/data/mitochondrial-genes.csv' 2026-04-19T17:12:49,375 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-19T17:12:52,484 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-19T17:12:52,556 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-19T17:12:53,647 adding 'pirlygenes/data/subtype-deconvolved-expression.csv.gz' 2026-04-19T17:12:53,726 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-19T17:12:54,236 adding 'pirlygenes/data/tcga-deconvolved-expression.csv.gz' 2026-04-19T17:12:54,269 adding 'pirlygenes/data/therapy-response-signatures.csv' 2026-04-19T17:12:54,270 adding 'pirlygenes/data/tme-markers.csv' 2026-04-19T17:12:54,272 adding 'pirlygenes/decomposition/__init__.py' 2026-04-19T17:12:54,277 adding 'pirlygenes/decomposition/engine.py' 2026-04-19T17:12:54,280 adding 'pirlygenes/decomposition/panels.py' 2026-04-19T17:12:54,283 adding 'pirlygenes/decomposition/plot.py' 2026-04-19T17:12:54,285 adding 'pirlygenes/decomposition/signature.py' 2026-04-19T17:12:54,287 adding 'pirlygenes/decomposition/templates.py' 2026-04-19T17:12:54,291 adding 'pirlygenes-4.23.0.dist-info/licenses/LICENSE' 2026-04-19T17:12:54,297 adding 'pirlygenes-4.23.0.dist-info/METADATA' 2026-04-19T17:12:54,299 adding 'pirlygenes-4.23.0.dist-info/WHEEL' 2026-04-19T17:12:54,300 adding 'pirlygenes-4.23.0.dist-info/entry_points.txt' 2026-04-19T17:12:54,301 adding 'pirlygenes-4.23.0.dist-info/top_level.txt' 2026-04-19T17:12:54,302 adding 'pirlygenes-4.23.0.dist-info/RECORD' 2026-04-19T17:12:54,524 removing build/bdist.linux-armv7l/wheel 2026-04-19T17:12:54,659 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-19T17:12:55,105 Created wheel for pirlygenes: filename=pirlygenes-4.23.0-py3-none-any.whl size=20986140 sha256=4aa59937bbbb56fc178db480f073fb913704551d1af76d306b70cb5b16d4e5ab 2026-04-19T17:12:55,106 Stored in directory: /tmp/pip-ephem-wheel-cache-vg0er048/wheels/00/dc/94/d1299e0474010d836fad60c8bf89ae1eb5f7366e1f9108156f 2026-04-19T17:12:55,132 Successfully built pirlygenes 2026-04-19T17:12:55,616 Removed build tracker: '/tmp/pip-build-tracker-6qz_mq2p'