2026-04-20T05:38:37,997 Created temporary directory: /tmp/pip-ephem-wheel-cache-5xp0_74a 2026-04-20T05:38:37,999 Created temporary directory: /tmp/pip-build-tracker-ec77v200 2026-04-20T05:38:38,000 Initialized build tracking at /tmp/pip-build-tracker-ec77v200 2026-04-20T05:38:38,000 Created build tracker: /tmp/pip-build-tracker-ec77v200 2026-04-20T05:38:38,001 Entered build tracker: /tmp/pip-build-tracker-ec77v200 2026-04-20T05:38:38,001 Created temporary directory: /tmp/pip-wheel-ra_oq8g4 2026-04-20T05:38:38,004 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-20T05:38:38,007 Created temporary directory: /tmp/pip-ephem-wheel-cache-kzat3ibx 2026-04-20T05:38:38,029 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-20T05:38:38,032 2 location(s) to search for versions of pirlygenes: 2026-04-20T05:38:38,032 * https://pypi.org/simple/pirlygenes/ 2026-04-20T05:38:38,032 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-20T05:38:38,033 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-20T05:38:38,034 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-20T05:38:38,035 Found index url https://pypi.org/simple 2026-04-20T05:38:38,212 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-20T05:38:38,255 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,256 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-20T05:38:38,257 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,258 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-20T05:38:38,259 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,260 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-20T05:38:38,260 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/24/35/2c1111a823202625bf5719038d745faaa60ed3613bc790db7a365d0d9e91/pirlygenes-1.9.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,261 Found link https://files.pythonhosted.org/packages/00/21/33762d0e1497cb8f52920f8804591991b077145275a9bb472d54cb34bd3b/pirlygenes-1.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.9.0 2026-04-20T05:38:38,262 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/da/14/c0e64534396352276e63b247458c9b5db4f43c4d36ecba3f447203f1bed8/pirlygenes-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,263 Found link https://files.pythonhosted.org/packages/1a/15/da113c10028ce6cef9359672f0d6309ef13174410f74bd641ab56fe968e1/pirlygenes-2.0.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.0 2026-04-20T05:38:38,264 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ef/67/1ca24d76bbfbb8547103f0c887d0215b8689b9d68ca03b8e63245446d85f/pirlygenes-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,265 Found link https://files.pythonhosted.org/packages/f0/57/519f98c3e3ce7414973c34a35b56e0123e63c2397c1c28a40f52096110e8/pirlygenes-2.0.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.0.1 2026-04-20T05:38:38,266 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/b2/a5/eb85bc710dc92ed90930681df0d0727ba7c8adce5f597218b60c8e749abb/pirlygenes-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,266 Found link https://files.pythonhosted.org/packages/ac/1c/535ab059a16f501c104975a9afdbe26292625c5f6b4565dfaff29827dae5/pirlygenes-2.1.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.1.0 2026-04-20T05:38:38,267 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/31/67/9fb299b51b80ea11807d6cca24343e9b5bcd4f343f5590f443f4ab27d256/pirlygenes-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,268 Found link https://files.pythonhosted.org/packages/de/bc/dcd2f53a5eb6548d7c18e70463efb3f452b5d8baacde0faf0c91fe00ce06/pirlygenes-2.2.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.0 2026-04-20T05:38:38,269 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/4d/d7/cc21525563dbe1ac4f165f25a3e301a8a8547316b959381b70653d000f17/pirlygenes-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,270 Found link https://files.pythonhosted.org/packages/1b/ca/c2c092e3d7b516325863b5b1d57c5be9837f8e60557858ef52efb985aa0d/pirlygenes-2.2.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.2.1 2026-04-20T05:38:38,270 Skipping link: No binaries permitted for pirlygenes: 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2026-04-20T05:38:38,274 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/8a/44/da6370091aea72fec9b67e936a15ae4ebdf9dff908aa9d19047e94159d04/pirlygenes-2.3.2-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,274 Found link https://files.pythonhosted.org/packages/10/a9/907cc4508814906e8c990c01f4f5a8e876d8494a06e48b3231bc8cb0fc76/pirlygenes-2.3.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.3.2 2026-04-20T05:38:38,275 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3f/b6/830da154d45d5ac46ae4fec7615e8cad6fdc54a8977e3ad5d5b719b3e381/pirlygenes-2.4.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,276 Found link https://files.pythonhosted.org/packages/72/cb/85849617feaf50f329a0545583033d697e353ad48f34484f70c94a38a7fe/pirlygenes-2.4.0.tar.gz (from 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https://files.pythonhosted.org/packages/6a/f7/cd7bb912ebd9a8fd5678378444dd4cbf57614f841b83aca8d8ae68221512/pirlygenes-2.4.2.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.4.2 2026-04-20T05:38:38,280 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/06/ba/c6259e141db6ae01ab36e9b24878291184fa9551fbba7d8cc122d162370a/pirlygenes-2.5.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,281 Found link https://files.pythonhosted.org/packages/2a/02/a683073293d6e1567e993c5ddeb5b4f20cecf9c143b7c34ca69c6b0fe0bf/pirlygenes-2.5.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.0 2026-04-20T05:38:38,282 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/3b/3a/d237a82d8794a11a26a1ef9bfff88a11e9bdf47b1f6505e328954ced2b0e/pirlygenes-2.5.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,283 Found link https://files.pythonhosted.org/packages/b5/e2/879e92ab87381e4ef635263624155d4f2331588bc05aea8a223225f108f7/pirlygenes-2.5.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.5.1 2026-04-20T05:38:38,283 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a4/c0/3c64fac1cdedad5802d2905b10f836c5a5d805a9dc0d0beeda285a065df3/pirlygenes-2.6.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,284 Found link https://files.pythonhosted.org/packages/2a/df/7ffd654f123a21c608210fe4ed416bda8e56ceb36743d27a8fa4b9eace1e/pirlygenes-2.6.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.0 2026-04-20T05:38:38,285 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/f0/d2/7ffa0b7cc699219de0878a38a56a56cdae06b1ca3c9ff50044206427a807/pirlygenes-2.6.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,286 Found link https://files.pythonhosted.org/packages/f6/b2/938ef2e7e5d2a6bee6875aeeb1ed25157d2cdbec1b11345a753cd45565e5/pirlygenes-2.6.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.6.1 2026-04-20T05:38:38,287 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/7b/fb/bc52d124faa5327f959bd76cc38660bc2a83aecb0407925ea1049ef3959b/pirlygenes-2.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,288 Found link https://files.pythonhosted.org/packages/15/67/d13b9f14153a2b9aea2b84de47f2e83691875d365f34778b508481422836/pirlygenes-2.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.0 2026-04-20T05:38:38,288 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/57/7c/f087e5968735238e4782164c5af185405be0eec060121b61c187f5c55429/pirlygenes-2.7.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,290 Found link https://files.pythonhosted.org/packages/0a/9f/6f1a18016493c71ae63b236e4e5186535b85f15188b969cfded686dec47a/pirlygenes-2.7.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.7.1 2026-04-20T05:38:38,290 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/34/d6/ffd2ae0d7511cb22ee2b857520a19acb21ff834f8d8baaa2e70c4c542d7f/pirlygenes-2.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,291 Found link https://files.pythonhosted.org/packages/33/84/8cd197f6dc1169477bc562d9d667a30ccb0488747c3fe5682e91dea7e16c/pirlygenes-2.8.0.tar.gz (from 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https://files.pythonhosted.org/packages/70/9e/1157f5be862f2934c4601e58c170f604ec09a41f39353e19db0cfabd3747/pirlygenes-2.9.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.9.0 2026-04-20T05:38:38,295 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/6b/80/dfbdeb2a06952345e1a272f55eea07270f41c478be600056c0df5b0271d6/pirlygenes-2.10.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,296 Found link https://files.pythonhosted.org/packages/16/66/a9669f568842a86ec7b40ca9405cdefdafbd5835aebefa7f042f28db4735/pirlygenes-2.10.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 2.10.0 2026-04-20T05:38:38,296 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/fd/49/2f105db973d6a1c5529814f286d8e1a30d25f4ad3186069ad88a2b12de73/pirlygenes-2.11.0-py3-none-any.whl (from 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2026-04-20T05:38:38,450 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/23/41/ce3f72eb76ef155a35db85d3487b5d56ade1ea233da27e9795b2384d68f6/pirlygenes-4.33.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,451 Found link https://files.pythonhosted.org/packages/9a/b8/8b7e2bc272d2c322c11fab27211016e3c6697068a3f4433e18122860fcea/pirlygenes-4.33.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.33.0 2026-04-20T05:38:38,451 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/a2/0a/218bc4aa959e0af88bbf0cfd614a8f9815954ed60230cdf658230d15a033/pirlygenes-4.34.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,452 Found link https://files.pythonhosted.org/packages/bb/82/bb311a576e0553dd68b18488ba605076325e83f30b5946d9950dac4c29ef/pirlygenes-4.34.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.34.0 2026-04-20T05:38:38,453 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/76/86/9efd6897faf5366d260fbf89fe6a12c9ba9512997748b4fb998047db9ee4/pirlygenes-4.35.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,454 Found link https://files.pythonhosted.org/packages/f3/67/78f431fcb1f89957bfea8b852d9cf47ff3a9cfc221f0bd1eff957192ccbb/pirlygenes-4.35.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.35.0 2026-04-20T05:38:38,454 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/ee/67/f8994e226ca6f57e23fcfc098fa07bdf10e9fe2214433fce2e8e287122dc/pirlygenes-4.35.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,455 Found link https://files.pythonhosted.org/packages/d0/ca/8bb2d41cc786fbb6dadd2ad7180b9537a93f52f1efe38ddb82134329f13f/pirlygenes-4.35.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 4.35.1 2026-04-20T05:38:38,456 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-20T05:38:38,457 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-20T05:38:38,458 Found index url https://www.piwheels.org/simple 2026-04-20T05:38:38,630 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-20T05:38:38,664 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-4.35.0-py3-none-any.whl#sha256=6eaa1a2454ef069f8d2ffc90a1d051dc1146d5f44b833bfa485806b4531d3eb8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,665 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.13.0-py3-none-any.whl#sha256=e13770f973755e3b8db3fc2f70e2d674dd6055486bb4c242b0663dc91da8137d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,723 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.12.0-py3-none-any.whl#sha256=4186f04e1d7c70e23fa5546b20cdac46e49b68e86fc5bda42db5151921548f5d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,723 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.11.0-py3-none-any.whl#sha256=fb3178b049345f9c0317f2836b267df8ff2b0f59ce7ddaf5dd9b25db24deae3d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,724 Skipping link: No binaries permitted for pirlygenes: 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https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.8.0-py3-none-any.whl#sha256=9674c64aec5ff095f4fd209c995e33c4427c4029d9786a79177b3d1b837a6faf (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,727 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.1-py3-none-any.whl#sha256=711ccbff08ff3332a4caf4b1867ed739f0a4f59cd39dcdf7b2d2d46bb7bb12cb (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,727 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.7.0-py3-none-any.whl#sha256=c9b45dd5c01a5c24f9323fa0fbc8c32b9e70e49d7898e965ecd199ae56a992de (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,728 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.1-py3-none-any.whl#sha256=7f45bca601f637ca0bfa8466169c84685b60a3dd5fcb8d07132cd1fa4159f3a8 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,728 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.6.0-py3-none-any.whl#sha256=99581a72b34217d895a9e9377aebff39d3cccb34eea0c01f3056f29d8ea69479 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,729 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.1-py3-none-any.whl#sha256=b097b3f8b48f33c23fc888588f0644e92b3b973d37536ae992576cff3d2c550a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,729 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.5.0-py3-none-any.whl#sha256=7ed846a4e0950617d0103bb8a51b54f0f00bfa982caa83c9013067f52251e39e (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,730 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.2-py3-none-any.whl#sha256=25793e34918b22dc36562123fdf4e753df72f9cc712aa69c1f151b96a09ab68a (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,730 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.1-py3-none-any.whl#sha256=a8a045cb5d44a0dc2d8d5b5d15f847d44c7fcbf4e65dfb65be5127275d30604c (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,731 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.4.0-py3-none-any.whl#sha256=06c550405b77c1a7f42776114270baca28b88844cd57d5a0f5e0ed554ee215dc (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,731 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.2-py3-none-any.whl#sha256=dc55fdcf24cb20e6e920706a735f11dc23aaaf50051f4a01414854d27c76e89f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,732 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.1-py3-none-any.whl#sha256=c90c60420627308e8f538bbaa1306ced6e7699e82818b6016119c5b5661936b0 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,733 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.3.0-py3-none-any.whl#sha256=88bf981b5ba9b7fa0a46232499d049d3faafaf76e258e3d09e1b65ba9f97b22d (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,733 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.1-py3-none-any.whl#sha256=5327c129eaf178c76a60b5257dfe32546f0c09dd8881ddb296f458e11934ccf7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,734 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.2.0-py3-none-any.whl#sha256=09718fb06f1ce838406a07641c7df1df1ff56ad9bcca5e70f0dabeabf18d9eb6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,734 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.1.0-py3-none-any.whl#sha256=6e0978a40a4b6a16e6e44012574ac0838b0abf01a40770a2b4c8e7db2aa583a6 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,735 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.1-py3-none-any.whl#sha256=0956b5fd3f21d43dea90b38bbc06628b327c49504aa0fc53d3d81d55208c6f5f (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,735 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-2.0.0-py3-none-any.whl#sha256=de738501d014cdb6760b96e01afa7d18cb8dac3d863d433e9ce8fce0172641f5 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,736 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.9.0-py3-none-any.whl#sha256=3be90370a11cc9b33de80e02b84f99700133addc5994e35bcb8b80b76f09f8ae (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,736 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.1-py3-none-any.whl#sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,737 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.8.0-py3-none-any.whl#sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,737 Skipping link: No binaries permitted for pirlygenes: https://archive1.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-20T05:38:38,738 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-20T05:38:38,738 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-20T05:38:38,773 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-20T05:38:38,796 Collecting pirlygenes==4.35.1 2026-04-20T05:38:38,798 Created temporary directory: /tmp/pip-unpack-lgual34u 2026-04-20T05:38:38,945 Downloading pirlygenes-4.35.1.tar.gz (21.8 MB) 2026-04-20T05:38:41,801 Added pirlygenes==4.35.1 from https://files.pythonhosted.org/packages/d0/ca/8bb2d41cc786fbb6dadd2ad7180b9537a93f52f1efe38ddb82134329f13f/pirlygenes-4.35.1.tar.gz to build tracker '/tmp/pip-build-tracker-ec77v200' 2026-04-20T05:38:41,807 Created temporary directory: /tmp/pip-build-env-l_j2d9nr 2026-04-20T05:38:41,812 Installing build dependencies: started 2026-04-20T05:38:41,813 Running command pip subprocess to install build dependencies 2026-04-20T05:38:42,966 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-20T05:38:43,377 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-20T05:38:43,400 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-20T05:38:45,193 Collecting setuptools>=60 2026-04-20T05:38:45,293 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-20T05:38:45,672 Collecting setuptools-scm>=8.0 2026-04-20T05:38:45,687 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-20T05:38:45,772 Collecting vcs-versioning>=1.0.0.dev0 2026-04-20T05:38:45,793 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-20T05:38:45,979 Collecting packaging>=20 2026-04-20T05:38:45,994 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-20T05:38:49,000 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-20T05:38:52,675 Creating /tmp/pip-build-env-l_j2d9nr/overlay/local/bin 2026-04-20T05:38:52,677 changing mode of /tmp/pip-build-env-l_j2d9nr/overlay/local/bin/vcs-versioning to 755 2026-04-20T05:38:52,789 changing mode of /tmp/pip-build-env-l_j2d9nr/overlay/local/bin/setuptools-scm to 755 2026-04-20T05:38:52,818 Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-20T05:38:53,103 Installing build dependencies: finished with status 'done' 2026-04-20T05:38:53,119 Getting requirements to build wheel: started 2026-04-20T05:38:53,120 Running command Getting requirements to build wheel 2026-04-20T05:38:54,064 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-20T05:38:54,181 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:54,181 !! 2026-04-20T05:38:54,183 ******************************************************************************** 2026-04-20T05:38:54,183 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:54,184 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:54,186 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:54,186 ******************************************************************************** 2026-04-20T05:38:54,187 !! 2026-04-20T05:38:54,188 dist._finalize_license_expression() 2026-04-20T05:38:54,189 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:54,189 !! 2026-04-20T05:38:54,190 ******************************************************************************** 2026-04-20T05:38:54,191 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:54,192 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:54,193 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:54,194 ******************************************************************************** 2026-04-20T05:38:54,196 !! 2026-04-20T05:38:54,196 self._finalize_license_expression() 2026-04-20T05:38:54,197 running egg_info 2026-04-20T05:38:54,207 writing pirlygenes.egg-info/PKG-INFO 2026-04-20T05:38:54,212 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-20T05:38:54,214 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-20T05:38:54,216 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-20T05:38:54,217 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-20T05:38:54,265 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-20T05:38:54,266 return get_active_overrides().subprocess_timeout 2026-04-20T05:38:54,274 listing git files failed - pretending there aren't any 2026-04-20T05:38:54,285 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:54,299 adding license file 'LICENSE' 2026-04-20T05:38:54,308 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:54,413 Getting requirements to build wheel: finished with status 'done' 2026-04-20T05:38:54,417 Created temporary directory: /tmp/pip-modern-metadata-2aesfida 2026-04-20T05:38:54,419 Preparing metadata (pyproject.toml): started 2026-04-20T05:38:54,420 Running command Preparing metadata (pyproject.toml) 2026-04-20T05:38:55,071 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-20T05:38:55,177 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:55,177 !! 2026-04-20T05:38:55,178 ******************************************************************************** 2026-04-20T05:38:55,179 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:55,180 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:55,181 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:55,182 ******************************************************************************** 2026-04-20T05:38:55,183 !! 2026-04-20T05:38:55,184 dist._finalize_license_expression() 2026-04-20T05:38:55,184 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:55,185 !! 2026-04-20T05:38:55,186 ******************************************************************************** 2026-04-20T05:38:55,186 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:55,188 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:55,189 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:55,189 ******************************************************************************** 2026-04-20T05:38:55,190 !! 2026-04-20T05:38:55,191 self._finalize_license_expression() 2026-04-20T05:38:55,192 running dist_info 2026-04-20T05:38:55,207 creating /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info 2026-04-20T05:38:55,207 writing /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/PKG-INFO 2026-04-20T05:38:55,213 writing dependency_links to /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/dependency_links.txt 2026-04-20T05:38:55,215 writing entry points to /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/entry_points.txt 2026-04-20T05:38:55,216 writing requirements to /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/requires.txt 2026-04-20T05:38:55,218 writing top-level names to /tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/top_level.txt 2026-04-20T05:38:55,219 writing manifest file '/tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:55,259 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-20T05:38:55,259 return get_active_overrides().subprocess_timeout 2026-04-20T05:38:55,266 listing git files failed - pretending there aren't any 2026-04-20T05:38:55,274 reading manifest file '/tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:55,275 adding license file 'LICENSE' 2026-04-20T05:38:55,281 writing manifest file '/tmp/pip-modern-metadata-2aesfida/pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:55,282 creating '/tmp/pip-modern-metadata-2aesfida/pirlygenes-4.35.1.dist-info' 2026-04-20T05:38:55,418 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-20T05:38:55,425 Source in /tmp/pip-wheel-ra_oq8g4/pirlygenes_c1f31ae7d3db42d7a46e5429dffad336 has version 4.35.1, which satisfies requirement pirlygenes==4.35.1 from https://files.pythonhosted.org/packages/d0/ca/8bb2d41cc786fbb6dadd2ad7180b9537a93f52f1efe38ddb82134329f13f/pirlygenes-4.35.1.tar.gz 2026-04-20T05:38:55,426 Removed pirlygenes==4.35.1 from https://files.pythonhosted.org/packages/d0/ca/8bb2d41cc786fbb6dadd2ad7180b9537a93f52f1efe38ddb82134329f13f/pirlygenes-4.35.1.tar.gz from build tracker '/tmp/pip-build-tracker-ec77v200' 2026-04-20T05:38:55,435 Created temporary directory: /tmp/pip-unpack-0zau2rwc 2026-04-20T05:38:55,436 Building wheels for collected packages: pirlygenes 2026-04-20T05:38:55,441 Created temporary directory: /tmp/pip-wheel-4r1cec4e 2026-04-20T05:38:55,441 Destination directory: /tmp/pip-wheel-4r1cec4e 2026-04-20T05:38:55,444 Building wheel for pirlygenes (pyproject.toml): started 2026-04-20T05:38:55,445 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-20T05:38:56,064 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-20T05:38:56,162 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:56,163 !! 2026-04-20T05:38:56,164 ******************************************************************************** 2026-04-20T05:38:56,165 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:56,166 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:56,167 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:56,168 ******************************************************************************** 2026-04-20T05:38:56,169 !! 2026-04-20T05:38:56,169 dist._finalize_license_expression() 2026-04-20T05:38:56,170 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-20T05:38:56,170 !! 2026-04-20T05:38:56,171 ******************************************************************************** 2026-04-20T05:38:56,172 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-20T05:38:56,173 License :: OSI Approved :: Apache Software License 2026-04-20T05:38:56,174 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-20T05:38:56,175 ******************************************************************************** 2026-04-20T05:38:56,176 !! 2026-04-20T05:38:56,177 self._finalize_license_expression() 2026-04-20T05:38:56,177 running bdist_wheel 2026-04-20T05:38:56,197 running build 2026-04-20T05:38:56,197 running build_py 2026-04-20T05:38:56,200 creating build/lib/pirlygenes 2026-04-20T05:38:56,202 copying pirlygenes/plot_therapy.py -> build/lib/pirlygenes 2026-04-20T05:38:56,205 copying pirlygenes/plot_tumor_expr.py -> build/lib/pirlygenes 2026-04-20T05:38:56,208 copying pirlygenes/confidence.py -> build/lib/pirlygenes 2026-04-20T05:38:56,211 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-20T05:38:56,213 copying pirlygenes/sample_quality.py -> build/lib/pirlygenes 2026-04-20T05:38:56,216 copying pirlygenes/tumor_purity.py -> build/lib/pirlygenes 2026-04-20T05:38:56,221 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-20T05:38:56,224 copying pirlygenes/plot_scatter.py -> build/lib/pirlygenes 2026-04-20T05:38:56,227 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-20T05:38:56,229 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-20T05:38:56,232 copying pirlygenes/therapy_response.py -> build/lib/pirlygenes 2026-04-20T05:38:56,235 copying pirlygenes/brief.py -> build/lib/pirlygenes 2026-04-20T05:38:56,237 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-20T05:38:56,239 copying pirlygenes/cohort_deconvolve.py -> build/lib/pirlygenes 2026-04-20T05:38:56,242 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-20T05:38:56,244 copying pirlygenes/plot_strip.py -> build/lib/pirlygenes 2026-04-20T05:38:56,247 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-20T05:38:56,249 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-20T05:38:56,251 copying pirlygenes/provenance.py -> build/lib/pirlygenes 2026-04-20T05:38:56,253 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-20T05:38:56,256 copying pirlygenes/plot_target_deep_dive.py -> build/lib/pirlygenes 2026-04-20T05:38:56,258 copying pirlygenes/format.py -> build/lib/pirlygenes 2026-04-20T05:38:56,261 copying pirlygenes/plot_subtype_signature.py -> build/lib/pirlygenes 2026-04-20T05:38:56,263 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-20T05:38:56,266 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-20T05:38:56,269 copying pirlygenes/tumor_evidence.py -> build/lib/pirlygenes 2026-04-20T05:38:56,271 copying pirlygenes/sample_context.py -> build/lib/pirlygenes 2026-04-20T05:38:56,274 copying pirlygenes/tcga_decompose.py -> build/lib/pirlygenes 2026-04-20T05:38:56,277 copying pirlygenes/reasoning.py -> build/lib/pirlygenes 2026-04-20T05:38:56,279 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-20T05:38:56,285 copying pirlygenes/plot_embedding.py -> build/lib/pirlygenes 2026-04-20T05:38:56,288 copying pirlygenes/healthy_vs_tumor.py -> build/lib/pirlygenes 2026-04-20T05:38:56,291 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-20T05:38:56,294 running egg_info 2026-04-20T05:38:56,309 writing pirlygenes.egg-info/PKG-INFO 2026-04-20T05:38:56,313 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-20T05:38:56,315 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-20T05:38:56,316 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-20T05:38:56,318 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-20T05:38:56,351 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-20T05:38:56,351 return get_active_overrides().subprocess_timeout 2026-04-20T05:38:56,358 listing git files failed - pretending there aren't any 2026-04-20T05:38:56,365 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:56,375 adding license file 'LICENSE' 2026-04-20T05:38:56,383 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-20T05:38:56,386 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-20T05:38:56,386 !! 2026-04-20T05:38:56,387 ******************************************************************************** 2026-04-20T05:38:56,388 ############################ 2026-04-20T05:38:56,388 # Package would be ignored # 2026-04-20T05:38:56,389 ############################ 2026-04-20T05:38:56,389 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-20T05:38:56,390 but it is absent from setuptools' `packages` configuration. 2026-04-20T05:38:56,391 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-20T05:38:56,391 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-20T05:38:56,391 to the `packages` configuration field. 2026-04-20T05:38:56,392 Alternatively, you can also rely on setuptools' discovery methods 2026-04-20T05:38:56,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-20T05:38:56,393 instead of `find_packages(...)`/`find:`). 2026-04-20T05:38:56,395 You can read more about "package discovery" on setuptools documentation page: 2026-04-20T05:38:56,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-20T05:38:56,397 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-20T05:38:56,397 already explicitly excluding 'pirlygenes.data' via 2026-04-20T05:38:56,398 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-20T05:38:56,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-20T05:38:56,399 combination with a more fine grained `package-data` configuration. 2026-04-20T05:38:56,400 You can read more about "package data files" on setuptools documentation page: 2026-04-20T05:38:56,401 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-20T05:38:56,403 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-20T05:38:56,404 even if it does not contain any `.py` files. 2026-04-20T05:38:56,404 On the other hand, currently there is no concept of package data 2026-04-20T05:38:56,405 directory, all directories are treated like packages. 2026-04-20T05:38:56,405 ******************************************************************************** 2026-04-20T05:38:56,406 !! 2026-04-20T05:38:56,407 check.warn(importable) 2026-04-20T05:38:56,407 /tmp/pip-build-env-l_j2d9nr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.decomposition' is absent from the `packages` configuration. 2026-04-20T05:38:56,408 !! 2026-04-20T05:38:56,409 ******************************************************************************** 2026-04-20T05:38:56,410 ############################ 2026-04-20T05:38:56,410 # Package would be ignored # 2026-04-20T05:38:56,411 ############################ 2026-04-20T05:38:56,411 Python recognizes 'pirlygenes.decomposition' as an importable package[^1], 2026-04-20T05:38:56,412 but it is absent from setuptools' `packages` configuration. 2026-04-20T05:38:56,413 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-20T05:38:56,413 package, please make sure that 'pirlygenes.decomposition' is explicitly added 2026-04-20T05:38:56,414 to the `packages` configuration field. 2026-04-20T05:38:56,415 Alternatively, you can also rely on setuptools' discovery methods 2026-04-20T05:38:56,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-20T05:38:56,416 instead of `find_packages(...)`/`find:`). 2026-04-20T05:38:56,417 You can read more about "package discovery" on setuptools documentation page: 2026-04-20T05:38:56,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-20T05:38:56,418 If you don't want 'pirlygenes.decomposition' to be distributed and are 2026-04-20T05:38:56,419 already explicitly excluding 'pirlygenes.decomposition' via 2026-04-20T05:38:56,419 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-20T05:38:56,420 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-20T05:38:56,420 combination with a more fine grained `package-data` configuration. 2026-04-20T05:38:56,421 You can read more about "package data files" on setuptools documentation page: 2026-04-20T05:38:56,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-20T05:38:56,423 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-20T05:38:56,424 even if it does not contain any `.py` files. 2026-04-20T05:38:56,425 On the other hand, currently there is no concept of package data 2026-04-20T05:38:56,425 directory, all directories are treated like packages. 2026-04-20T05:38:56,426 ******************************************************************************** 2026-04-20T05:38:56,426 !! 2026-04-20T05:38:56,427 check.warn(importable) 2026-04-20T05:38:56,427 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-20T05:38:56,428 creating build/lib/pirlygenes/data 2026-04-20T05:38:56,428 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,429 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,429 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,430 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,430 copying pirlygenes/data/TCR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,432 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,432 copying pirlygenes/data/artifact-expectations.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,433 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,433 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,434 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,434 copying pirlygenes/data/cancer-family-panels.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,435 copying pirlygenes/data/cancer-key-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,435 copying pirlygenes/data/cancer-surfaceome.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,436 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,440 copying pirlygenes/data/cancer-type-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,443 copying pirlygenes/data/cancer-type-registry.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,446 copying pirlygenes/data/culture-stress-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,448 copying pirlygenes/data/degradation-gene-pairs.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,450 copying pirlygenes/data/ensembl-id-aliases.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,453 copying pirlygenes/data/estimate-signatures.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,456 copying pirlygenes/data/extra-tx-mappings.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,459 copying pirlygenes/data/ffpe-sensitive-markers.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,461 copying pirlygenes/data/gene-sets.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,463 copying pirlygenes/data/heme-tumor-up-vs-matched-normal.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,466 copying pirlygenes/data/housekeeping-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,468 copying pirlygenes/data/hpa-cell-type-expression.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,578 copying pirlygenes/data/lineage-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,580 copying pirlygenes/data/mitochondrial-genes.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,582 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,584 copying pirlygenes/data/pan-cancer-expression.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,753 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,756 copying pirlygenes/data/subtype-deconvolved-expression.csv.gz -> build/lib/pirlygenes/data 2026-04-20T05:38:56,894 copying pirlygenes/data/surface-proteins.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,901 copying pirlygenes/data/tcga-deconvolved-expression.csv.gz -> build/lib/pirlygenes/data 2026-04-20T05:38:56,974 copying pirlygenes/data/therapy-response-signatures.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,977 copying pirlygenes/data/tme-markers.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,979 copying pirlygenes/data/tumor-up-vs-matched-normal.csv -> build/lib/pirlygenes/data 2026-04-20T05:38:56,981 creating build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,982 copying pirlygenes/decomposition/__init__.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,984 copying pirlygenes/decomposition/engine.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,987 copying pirlygenes/decomposition/panels.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,990 copying pirlygenes/decomposition/plot.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,993 copying pirlygenes/decomposition/signature.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:56,996 copying pirlygenes/decomposition/templates.py -> build/lib/pirlygenes/decomposition 2026-04-20T05:38:57,013 installing to build/bdist.linux-armv7l/wheel 2026-04-20T05:38:57,014 running install 2026-04-20T05:38:57,037 running install_lib 2026-04-20T05:38:57,045 creating build/bdist.linux-armv7l/wheel 2026-04-20T05:38:57,047 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-20T05:38:57,048 copying build/lib/pirlygenes/plot_therapy.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,051 copying build/lib/pirlygenes/plot_tumor_expr.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,055 copying build/lib/pirlygenes/confidence.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,057 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,060 copying build/lib/pirlygenes/sample_quality.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,062 copying build/lib/pirlygenes/tumor_purity.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,066 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,069 copying build/lib/pirlygenes/plot_scatter.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,071 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,073 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,075 copying build/lib/pirlygenes/therapy_response.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,077 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,079 copying build/lib/pirlygenes/brief.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,081 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,083 copying build/lib/pirlygenes/cohort_deconvolve.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,085 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,087 copying build/lib/pirlygenes/plot_strip.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,089 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,091 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,093 copying build/lib/pirlygenes/provenance.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,096 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,099 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-20T05:38:57,100 copying build/lib/pirlygenes/data/pan-cancer-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,267 copying build/lib/pirlygenes/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,269 copying build/lib/pirlygenes/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,272 copying build/lib/pirlygenes/data/surface-proteins.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,280 copying build/lib/pirlygenes/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,283 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,286 copying build/lib/pirlygenes/data/tme-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,289 copying build/lib/pirlygenes/data/tcga-deconvolved-expression.csv.gz -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,366 copying build/lib/pirlygenes/data/ffpe-sensitive-markers.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,368 copying build/lib/pirlygenes/data/degradation-gene-pairs.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,370 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,373 copying build/lib/pirlygenes/data/TCR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,375 copying build/lib/pirlygenes/data/cancer-family-panels.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,377 copying build/lib/pirlygenes/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,379 copying build/lib/pirlygenes/data/estimate-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,381 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,383 copying build/lib/pirlygenes/data/hpa-cell-type-expression.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,500 copying build/lib/pirlygenes/data/subtype-deconvolved-expression.csv.gz -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,634 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,636 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,638 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,640 copying build/lib/pirlygenes/data/culture-stress-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,642 copying build/lib/pirlygenes/data/artifact-expectations.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,643 copying build/lib/pirlygenes/data/heme-tumor-up-vs-matched-normal.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,645 copying build/lib/pirlygenes/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,648 copying build/lib/pirlygenes/data/tumor-up-vs-matched-normal.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,651 copying build/lib/pirlygenes/data/therapy-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,653 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,656 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,659 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,662 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,664 copying build/lib/pirlygenes/data/lineage-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,666 copying build/lib/pirlygenes/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,668 copying build/lib/pirlygenes/data/gene-sets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,670 copying build/lib/pirlygenes/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,673 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,675 copying build/lib/pirlygenes/data/cancer-surfaceome.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-20T05:38:57,677 copying build/lib/pirlygenes/plot_target_deep_dive.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,680 copying build/lib/pirlygenes/format.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,682 copying build/lib/pirlygenes/plot_subtype_signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,685 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,687 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,690 copying build/lib/pirlygenes/tumor_evidence.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,692 copying build/lib/pirlygenes/sample_context.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,695 copying build/lib/pirlygenes/tcga_decompose.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,698 creating build/bdist.linux-armv7l/wheel/pirlygenes/decomposition 2026-04-20T05:38:57,699 copying build/lib/pirlygenes/decomposition/panels.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,702 copying build/lib/pirlygenes/decomposition/templates.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,704 copying build/lib/pirlygenes/decomposition/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,706 copying build/lib/pirlygenes/decomposition/engine.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,709 copying build/lib/pirlygenes/decomposition/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,712 copying build/lib/pirlygenes/decomposition/signature.py -> build/bdist.linux-armv7l/wheel/./pirlygenes/decomposition 2026-04-20T05:38:57,714 copying build/lib/pirlygenes/reasoning.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,717 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,721 copying build/lib/pirlygenes/plot_embedding.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,724 copying build/lib/pirlygenes/healthy_vs_tumor.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,727 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-20T05:38:57,730 running install_egg_info 2026-04-20T05:38:57,736 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-4.35.1-py3.11.egg-info 2026-04-20T05:38:57,748 running install_scripts 2026-04-20T05:38:57,761 creating build/bdist.linux-armv7l/wheel/pirlygenes-4.35.1.dist-info/WHEEL 2026-04-20T05:38:57,763 creating '/tmp/pip-wheel-4r1cec4e/.tmp-62z0oty3/pirlygenes-4.35.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-20T05:38:57,766 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-20T05:38:57,768 adding 'pirlygenes/__init__.py' 2026-04-20T05:38:57,769 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-20T05:38:57,772 adding 'pirlygenes/brief.py' 2026-04-20T05:38:57,794 adding 'pirlygenes/cli.py' 2026-04-20T05:38:57,797 adding 'pirlygenes/cohort_deconvolve.py' 2026-04-20T05:38:57,799 adding 'pirlygenes/common.py' 2026-04-20T05:38:57,801 adding 'pirlygenes/confidence.py' 2026-04-20T05:38:57,803 adding 'pirlygenes/format.py' 2026-04-20T05:38:57,805 adding 'pirlygenes/gene_ids.py' 2026-04-20T05:38:57,806 adding 'pirlygenes/gene_names.py' 2026-04-20T05:38:57,815 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-20T05:38:57,819 adding 'pirlygenes/healthy_vs_tumor.py' 2026-04-20T05:38:57,821 adding 'pirlygenes/load_dataset.py' 2026-04-20T05:38:57,826 adding 'pirlygenes/load_expression.py' 2026-04-20T05:38:57,828 adding 'pirlygenes/plot.py' 2026-04-20T05:38:57,830 adding 'pirlygenes/plot_data_helpers.py' 2026-04-20T05:38:57,838 adding 'pirlygenes/plot_embedding.py' 2026-04-20T05:38:57,841 adding 'pirlygenes/plot_scatter.py' 2026-04-20T05:38:57,844 adding 'pirlygenes/plot_strip.py' 2026-04-20T05:38:57,846 adding 'pirlygenes/plot_subtype_signature.py' 2026-04-20T05:38:57,849 adding 'pirlygenes/plot_target_deep_dive.py' 2026-04-20T05:38:57,855 adding 'pirlygenes/plot_therapy.py' 2026-04-20T05:38:57,864 adding 'pirlygenes/plot_tumor_expr.py' 2026-04-20T05:38:57,867 adding 'pirlygenes/provenance.py' 2026-04-20T05:38:57,869 adding 'pirlygenes/reasoning.py' 2026-04-20T05:38:57,876 adding 'pirlygenes/sample_context.py' 2026-04-20T05:38:57,880 adding 'pirlygenes/sample_quality.py' 2026-04-20T05:38:57,883 adding 'pirlygenes/tcga_decompose.py' 2026-04-20T05:38:57,885 adding 'pirlygenes/therapy_response.py' 2026-04-20T05:38:57,887 adding 'pirlygenes/transcript_to_gene.py' 2026-04-20T05:38:57,889 adding 'pirlygenes/tumor_evidence.py' 2026-04-20T05:38:57,902 adding 'pirlygenes/tumor_purity.py' 2026-04-20T05:38:57,903 adding 'pirlygenes/version.py' 2026-04-20T05:38:57,906 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-20T05:38:57,910 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-20T05:38:57,911 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-20T05:38:57,913 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-20T05:38:57,914 adding 'pirlygenes/data/TCR-T-approved.csv' 2026-04-20T05:38:57,917 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-20T05:38:57,919 adding 'pirlygenes/data/artifact-expectations.csv' 2026-04-20T05:38:57,920 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-20T05:38:57,925 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-20T05:38:57,928 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-20T05:38:57,929 adding 'pirlygenes/data/cancer-family-panels.csv' 2026-04-20T05:38:57,940 adding 'pirlygenes/data/cancer-key-genes.csv' 2026-04-20T05:38:57,942 adding 'pirlygenes/data/cancer-surfaceome.csv' 2026-04-20T05:38:57,948 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-20T05:38:57,951 adding 'pirlygenes/data/cancer-type-genes.csv' 2026-04-20T05:38:57,953 adding 'pirlygenes/data/cancer-type-registry.csv' 2026-04-20T05:38:57,954 adding 'pirlygenes/data/culture-stress-genes.csv' 2026-04-20T05:38:57,955 adding 'pirlygenes/data/degradation-gene-pairs.csv' 2026-04-20T05:38:57,958 adding 'pirlygenes/data/ensembl-id-aliases.csv' 2026-04-20T05:38:57,959 adding 'pirlygenes/data/estimate-signatures.csv' 2026-04-20T05:38:57,961 adding 'pirlygenes/data/extra-tx-mappings.csv' 2026-04-20T05:38:57,962 adding 'pirlygenes/data/ffpe-sensitive-markers.csv' 2026-04-20T05:38:57,963 adding 'pirlygenes/data/gene-sets.csv' 2026-04-20T05:38:57,965 adding 'pirlygenes/data/heme-tumor-up-vs-matched-normal.csv' 2026-04-20T05:38:57,966 adding 'pirlygenes/data/housekeeping-genes.csv' 2026-04-20T05:39:00,594 adding 'pirlygenes/data/hpa-cell-type-expression.csv' 2026-04-20T05:39:00,643 adding 'pirlygenes/data/lineage-genes.csv' 2026-04-20T05:39:00,644 adding 'pirlygenes/data/mitochondrial-genes.csv' 2026-04-20T05:39:00,646 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-20T05:39:03,755 adding 'pirlygenes/data/pan-cancer-expression.csv' 2026-04-20T05:39:03,829 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-20T05:39:04,817 adding 'pirlygenes/data/subtype-deconvolved-expression.csv.gz' 2026-04-20T05:39:04,897 adding 'pirlygenes/data/surface-proteins.csv' 2026-04-20T05:39:05,409 adding 'pirlygenes/data/tcga-deconvolved-expression.csv.gz' 2026-04-20T05:39:05,441 adding 'pirlygenes/data/therapy-response-signatures.csv' 2026-04-20T05:39:05,443 adding 'pirlygenes/data/tme-markers.csv' 2026-04-20T05:39:05,445 adding 'pirlygenes/data/tumor-up-vs-matched-normal.csv' 2026-04-20T05:39:05,447 adding 'pirlygenes/decomposition/__init__.py' 2026-04-20T05:39:05,452 adding 'pirlygenes/decomposition/engine.py' 2026-04-20T05:39:05,455 adding 'pirlygenes/decomposition/panels.py' 2026-04-20T05:39:05,458 adding 'pirlygenes/decomposition/plot.py' 2026-04-20T05:39:05,460 adding 'pirlygenes/decomposition/signature.py' 2026-04-20T05:39:05,462 adding 'pirlygenes/decomposition/templates.py' 2026-04-20T05:39:05,465 adding 'pirlygenes-4.35.1.dist-info/licenses/LICENSE' 2026-04-20T05:39:05,472 adding 'pirlygenes-4.35.1.dist-info/METADATA' 2026-04-20T05:39:05,473 adding 'pirlygenes-4.35.1.dist-info/WHEEL' 2026-04-20T05:39:05,474 adding 'pirlygenes-4.35.1.dist-info/entry_points.txt' 2026-04-20T05:39:05,475 adding 'pirlygenes-4.35.1.dist-info/top_level.txt' 2026-04-20T05:39:05,476 adding 'pirlygenes-4.35.1.dist-info/RECORD' 2026-04-20T05:39:05,714 removing build/bdist.linux-armv7l/wheel 2026-04-20T05:39:05,865 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-20T05:39:06,305 Created wheel for pirlygenes: filename=pirlygenes-4.35.1-py3-none-any.whl size=21009719 sha256=bb16603430f510f9dc64c2de4b7ea15d5f6465f2351e0a4dd7183096d459734a 2026-04-20T05:39:06,307 Stored in directory: /tmp/pip-ephem-wheel-cache-kzat3ibx/wheels/1a/d0/5c/76ff291fdbb6466051c1dc354f72f276a1b4848b325d1f06cc 2026-04-20T05:39:06,333 Successfully built pirlygenes 2026-04-20T05:39:06,838 Removed build tracker: '/tmp/pip-build-tracker-ec77v200'