2026-04-21T03:18:01,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-x_w459qf 2026-04-21T03:18:01,436 Created temporary directory: /tmp/pip-build-tracker-xw7w7fiw 2026-04-21T03:18:01,437 Initialized build tracking at /tmp/pip-build-tracker-xw7w7fiw 2026-04-21T03:18:01,437 Created build tracker: /tmp/pip-build-tracker-xw7w7fiw 2026-04-21T03:18:01,438 Entered build tracker: /tmp/pip-build-tracker-xw7w7fiw 2026-04-21T03:18:01,439 Created temporary directory: /tmp/pip-wheel-jp3ak5fv 2026-04-21T03:18:01,441 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-21T03:18:01,444 Created temporary directory: /tmp/pip-ephem-wheel-cache-ualt6vao 2026-04-21T03:18:01,468 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-21T03:18:01,471 2 location(s) to search for versions of varcode: 2026-04-21T03:18:01,471 * https://pypi.org/simple/varcode/ 2026-04-21T03:18:01,471 * https://www.piwheels.org/simple/varcode/ 2026-04-21T03:18:01,472 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-04-21T03:18:01,473 Getting page https://pypi.org/simple/varcode/ 2026-04-21T03:18:01,474 Found index url https://pypi.org/simple 2026-04-21T03:18:01,704 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-04-21T03:18:01,729 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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https://pypi.org/simple/varcode/ 2026-04-21T03:18:02,122 Given no hashes to check 1 links for project 'varcode': discarding no candidates 2026-04-21T03:18:02,142 Collecting varcode==4.9.0 2026-04-21T03:18:02,144 Created temporary directory: /tmp/pip-unpack-2bwhlo9b 2026-04-21T03:18:02,371 Downloading varcode-4.9.0.tar.gz (224 kB) 2026-04-21T03:18:02,683 Added varcode==4.9.0 from https://files.pythonhosted.org/packages/14/3f/d9ccb3b55c38593d68e465a8eeadb4e599df006e06d6e0fd0abfa8b77735/varcode-4.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-xw7w7fiw' 2026-04-21T03:18:02,688 Created temporary directory: /tmp/pip-build-env-sijsj6gp 2026-04-21T03:18:02,692 Installing build dependencies: started 2026-04-21T03:18:02,694 Running command pip subprocess to install build dependencies 2026-04-21T03:18:02,724 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-21T03:18:02,764 Traceback (most recent call last): 2026-04-21T03:18:02,764 File "", line 192, in addpackage 2026-04-21T03:18:02,765 File "", line 1, in 2026-04-21T03:18:02,765 ModuleNotFoundError: No module named 'outofcuda' 2026-04-21T03:18:02,766 Remainder of file ignored 2026-04-21T03:18:03,853 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-21T03:18:04,263 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-21T03:18:04,286 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-21T03:18:06,055 Collecting setuptools>=64 2026-04-21T03:18:06,145 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-21T03:18:09,105 Installing collected packages: setuptools 2026-04-21T03:18:12,138 Successfully installed setuptools-82.0.1 2026-04-21T03:18:12,404 Installing build dependencies: finished with status 'done' 2026-04-21T03:18:12,411 Getting requirements to build wheel: started 2026-04-21T03:18:12,412 Running command Getting requirements to build wheel 2026-04-21T03:18:13,121 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:13,121 !! 2026-04-21T03:18:13,122 ******************************************************************************** 2026-04-21T03:18:13,123 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:13,124 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:13,125 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:13,125 ******************************************************************************** 2026-04-21T03:18:13,126 !! 2026-04-21T03:18:13,126 dist._finalize_license_expression() 2026-04-21T03:18:13,129 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:13,129 !! 2026-04-21T03:18:13,130 ******************************************************************************** 2026-04-21T03:18:13,131 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:13,132 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:13,134 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:13,134 ******************************************************************************** 2026-04-21T03:18:13,136 !! 2026-04-21T03:18:13,136 self._finalize_license_expression() 2026-04-21T03:18:13,139 running egg_info 2026-04-21T03:18:13,146 writing varcode.egg-info/PKG-INFO 2026-04-21T03:18:13,150 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-21T03:18:13,152 writing entry points to varcode.egg-info/entry_points.txt 2026-04-21T03:18:13,154 writing requirements to varcode.egg-info/requires.txt 2026-04-21T03:18:13,156 writing top-level names to varcode.egg-info/top_level.txt 2026-04-21T03:18:13,181 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:13,189 reading manifest template 'MANIFEST.in' 2026-04-21T03:18:13,191 adding license file 'LICENSE' 2026-04-21T03:18:13,198 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:13,295 Getting requirements to build wheel: finished with status 'done' 2026-04-21T03:18:13,299 Created temporary directory: /tmp/pip-modern-metadata-3oqrz6lo 2026-04-21T03:18:13,301 Preparing metadata (pyproject.toml): started 2026-04-21T03:18:13,302 Running command Preparing metadata (pyproject.toml) 2026-04-21T03:18:13,946 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:13,946 !! 2026-04-21T03:18:13,948 ******************************************************************************** 2026-04-21T03:18:13,948 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:13,950 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:13,951 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:13,952 ******************************************************************************** 2026-04-21T03:18:13,953 !! 2026-04-21T03:18:13,954 dist._finalize_license_expression() 2026-04-21T03:18:13,954 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:13,955 !! 2026-04-21T03:18:13,956 ******************************************************************************** 2026-04-21T03:18:13,956 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:13,957 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:13,958 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:13,959 ******************************************************************************** 2026-04-21T03:18:13,959 !! 2026-04-21T03:18:13,960 self._finalize_license_expression() 2026-04-21T03:18:13,961 running dist_info 2026-04-21T03:18:13,971 creating /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info 2026-04-21T03:18:13,972 writing /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/PKG-INFO 2026-04-21T03:18:13,976 writing dependency_links to /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/dependency_links.txt 2026-04-21T03:18:13,978 writing entry points to /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/entry_points.txt 2026-04-21T03:18:13,979 writing requirements to /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/requires.txt 2026-04-21T03:18:13,980 writing top-level names to /tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/top_level.txt 2026-04-21T03:18:13,982 writing manifest file '/tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:14,005 reading manifest file '/tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:14,007 reading manifest template 'MANIFEST.in' 2026-04-21T03:18:14,008 adding license file 'LICENSE' 2026-04-21T03:18:14,013 writing manifest file '/tmp/pip-modern-metadata-3oqrz6lo/varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:14,015 creating '/tmp/pip-modern-metadata-3oqrz6lo/varcode-4.9.0.dist-info' 2026-04-21T03:18:14,140 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-21T03:18:14,145 Source in /tmp/pip-wheel-jp3ak5fv/varcode_24b935c843d8473593fd73c38f75f069 has version 4.9.0, which satisfies requirement varcode==4.9.0 from https://files.pythonhosted.org/packages/14/3f/d9ccb3b55c38593d68e465a8eeadb4e599df006e06d6e0fd0abfa8b77735/varcode-4.9.0.tar.gz 2026-04-21T03:18:14,146 Removed varcode==4.9.0 from https://files.pythonhosted.org/packages/14/3f/d9ccb3b55c38593d68e465a8eeadb4e599df006e06d6e0fd0abfa8b77735/varcode-4.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-xw7w7fiw' 2026-04-21T03:18:14,152 Created temporary directory: /tmp/pip-unpack-ipir7l66 2026-04-21T03:18:14,153 Building wheels for collected packages: varcode 2026-04-21T03:18:14,158 Created temporary directory: /tmp/pip-wheel-79cts653 2026-04-21T03:18:14,158 Destination directory: /tmp/pip-wheel-79cts653 2026-04-21T03:18:14,161 Building wheel for varcode (pyproject.toml): started 2026-04-21T03:18:14,162 Running command Building wheel for varcode (pyproject.toml) 2026-04-21T03:18:14,811 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:14,812 !! 2026-04-21T03:18:14,813 ******************************************************************************** 2026-04-21T03:18:14,814 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:14,815 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:14,817 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:14,817 ******************************************************************************** 2026-04-21T03:18:14,819 !! 2026-04-21T03:18:14,820 dist._finalize_license_expression() 2026-04-21T03:18:14,820 /tmp/pip-build-env-sijsj6gp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T03:18:14,820 !! 2026-04-21T03:18:14,821 ******************************************************************************** 2026-04-21T03:18:14,822 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T03:18:14,823 License :: OSI Approved :: Apache Software License 2026-04-21T03:18:14,824 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T03:18:14,824 ******************************************************************************** 2026-04-21T03:18:14,825 !! 2026-04-21T03:18:14,826 self._finalize_license_expression() 2026-04-21T03:18:14,826 running bdist_wheel 2026-04-21T03:18:14,838 running build 2026-04-21T03:18:14,838 running build_py 2026-04-21T03:18:14,845 creating build/lib/varcode 2026-04-21T03:18:14,848 copying varcode/maf.py -> build/lib/varcode 2026-04-21T03:18:14,850 copying varcode/mutant_transcript.py -> build/lib/varcode 2026-04-21T03:18:14,853 copying varcode/__init__.py -> build/lib/varcode 2026-04-21T03:18:14,855 copying varcode/version.py -> build/lib/varcode 2026-04-21T03:18:14,857 copying varcode/csv_helpers.py -> build/lib/varcode 2026-04-21T03:18:14,859 copying varcode/util.py -> build/lib/varcode 2026-04-21T03:18:14,861 copying varcode/variant.py -> build/lib/varcode 2026-04-21T03:18:14,864 copying varcode/structural_variant.py -> build/lib/varcode 2026-04-21T03:18:14,866 copying varcode/outcomes.py -> build/lib/varcode 2026-04-21T03:18:14,869 copying varcode/splice_outcomes.py -> build/lib/varcode 2026-04-21T03:18:14,871 copying varcode/errors.py -> build/lib/varcode 2026-04-21T03:18:14,874 copying varcode/vcf_output.py -> build/lib/varcode 2026-04-21T03:18:14,876 copying varcode/string_helpers.py -> build/lib/varcode 2026-04-21T03:18:14,878 copying varcode/reference.py -> build/lib/varcode 2026-04-21T03:18:14,880 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-04-21T03:18:14,882 copying varcode/cryptic_exons.py -> build/lib/varcode 2026-04-21T03:18:14,885 copying varcode/genotype.py -> build/lib/varcode 2026-04-21T03:18:14,887 copying varcode/variant_collection.py -> build/lib/varcode 2026-04-21T03:18:14,890 copying varcode/common.py -> build/lib/varcode 2026-04-21T03:18:14,892 copying varcode/sv_allele_parser.py -> build/lib/varcode 2026-04-21T03:18:14,895 copying varcode/vcf.py -> build/lib/varcode 2026-04-21T03:18:14,898 copying varcode/nucleotides.py -> build/lib/varcode 2026-04-21T03:18:14,900 creating build/lib/varcode/annotators 2026-04-21T03:18:14,901 copying varcode/annotators/protein_diff.py -> build/lib/varcode/annotators 2026-04-21T03:18:14,904 copying varcode/annotators/__init__.py -> build/lib/varcode/annotators 2026-04-21T03:18:14,906 copying varcode/annotators/structural_variant.py -> build/lib/varcode/annotators 2026-04-21T03:18:14,909 copying varcode/annotators/registry.py -> build/lib/varcode/annotators 2026-04-21T03:18:14,912 copying varcode/annotators/fast.py -> build/lib/varcode/annotators 2026-04-21T03:18:14,914 creating build/lib/varcode/cli 2026-04-21T03:18:14,915 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-04-21T03:18:14,918 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-04-21T03:18:14,920 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-04-21T03:18:14,922 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-04-21T03:18:14,924 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-04-21T03:18:14,927 creating build/lib/varcode/effects 2026-04-21T03:18:14,929 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-04-21T03:18:14,931 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-04-21T03:18:14,934 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-04-21T03:18:14,936 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-04-21T03:18:14,939 copying varcode/effects/classify.py -> build/lib/varcode/effects 2026-04-21T03:18:14,941 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-04-21T03:18:14,943 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-04-21T03:18:14,946 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-04-21T03:18:14,947 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-04-21T03:18:14,950 copying varcode/effects/codon_tables.py -> build/lib/varcode/effects 2026-04-21T03:18:14,952 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-04-21T03:18:14,954 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-04-21T03:18:14,957 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-04-21T03:18:14,959 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-04-21T03:18:14,962 copying varcode/effects/fast_path.py -> build/lib/varcode/effects 2026-04-21T03:18:14,964 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-04-21T03:18:14,966 running egg_info 2026-04-21T03:18:14,976 writing varcode.egg-info/PKG-INFO 2026-04-21T03:18:14,980 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-21T03:18:14,982 writing entry points to varcode.egg-info/entry_points.txt 2026-04-21T03:18:14,983 writing requirements to varcode.egg-info/requires.txt 2026-04-21T03:18:14,984 writing top-level names to varcode.egg-info/top_level.txt 2026-04-21T03:18:14,999 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:15,006 reading manifest template 'MANIFEST.in' 2026-04-21T03:18:15,007 adding license file 'LICENSE' 2026-04-21T03:18:15,014 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-21T03:18:15,019 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-04-21T03:18:15,033 installing to build/bdist.linux-armv7l/wheel 2026-04-21T03:18:15,033 running install 2026-04-21T03:18:15,056 running install_lib 2026-04-21T03:18:15,062 creating build/bdist.linux-armv7l/wheel 2026-04-21T03:18:15,064 creating build/bdist.linux-armv7l/wheel/varcode 2026-04-21T03:18:15,066 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,068 copying build/lib/varcode/mutant_transcript.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,071 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,073 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,075 copying build/lib/varcode/csv_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,077 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,079 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,082 copying build/lib/varcode/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,084 copying build/lib/varcode/outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,086 copying build/lib/varcode/splice_outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,089 copying build/lib/varcode/errors.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,091 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,094 creating build/bdist.linux-armv7l/wheel/varcode/annotators 2026-04-21T03:18:15,095 copying build/lib/varcode/annotators/protein_diff.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-21T03:18:15,098 copying build/lib/varcode/annotators/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-21T03:18:15,100 copying build/lib/varcode/annotators/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-21T03:18:15,103 copying build/lib/varcode/annotators/registry.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-21T03:18:15,105 copying build/lib/varcode/annotators/fast.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-21T03:18:15,107 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,109 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,111 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,113 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-04-21T03:18:15,114 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,116 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,118 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,120 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,122 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,124 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-21T03:18:15,126 copying build/lib/varcode/cryptic_exons.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,129 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-04-21T03:18:15,130 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,132 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,135 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,137 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,140 copying build/lib/varcode/effects/classify.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,142 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,144 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,146 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,148 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,150 copying build/lib/varcode/effects/codon_tables.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,152 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,154 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,156 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,158 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,161 copying build/lib/varcode/effects/fast_path.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,163 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-21T03:18:15,165 copying build/lib/varcode/genotype.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,168 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,170 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,172 copying build/lib/varcode/sv_allele_parser.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,174 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,177 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-21T03:18:15,178 running install_egg_info 2026-04-21T03:18:15,183 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-4.9.0-py3.11.egg-info 2026-04-21T03:18:15,194 running install_scripts 2026-04-21T03:18:15,205 creating build/bdist.linux-armv7l/wheel/varcode-4.9.0.dist-info/WHEEL 2026-04-21T03:18:15,207 creating '/tmp/pip-wheel-79cts653/.tmp-oe745mof/varcode-4.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-21T03:18:15,210 adding 'varcode/__init__.py' 2026-04-21T03:18:15,211 adding 'varcode/common.py' 2026-04-21T03:18:15,214 adding 'varcode/cryptic_exons.py' 2026-04-21T03:18:15,216 adding 'varcode/csv_helpers.py' 2026-04-21T03:18:15,217 adding 'varcode/errors.py' 2026-04-21T03:18:15,219 adding 'varcode/genotype.py' 2026-04-21T03:18:15,221 adding 'varcode/maf.py' 2026-04-21T03:18:15,224 adding 'varcode/mutant_transcript.py' 2026-04-21T03:18:15,225 adding 'varcode/nucleotides.py' 2026-04-21T03:18:15,227 adding 'varcode/outcomes.py' 2026-04-21T03:18:15,229 adding 'varcode/reference.py' 2026-04-21T03:18:15,233 adding 'varcode/splice_outcomes.py' 2026-04-21T03:18:15,234 adding 'varcode/string_helpers.py' 2026-04-21T03:18:15,236 adding 'varcode/structural_variant.py' 2026-04-21T03:18:15,238 adding 'varcode/sv_allele_parser.py' 2026-04-21T03:18:15,239 adding 'varcode/ucsc_reference_names.py' 2026-04-21T03:18:15,240 adding 'varcode/util.py' 2026-04-21T03:18:15,243 adding 'varcode/variant.py' 2026-04-21T03:18:15,246 adding 'varcode/variant_collection.py' 2026-04-21T03:18:15,249 adding 'varcode/vcf.py' 2026-04-21T03:18:15,252 adding 'varcode/vcf_output.py' 2026-04-21T03:18:15,253 adding 'varcode/version.py' 2026-04-21T03:18:15,255 adding 'varcode/annotators/__init__.py' 2026-04-21T03:18:15,256 adding 'varcode/annotators/fast.py' 2026-04-21T03:18:15,258 adding 'varcode/annotators/protein_diff.py' 2026-04-21T03:18:15,259 adding 'varcode/annotators/registry.py' 2026-04-21T03:18:15,264 adding 'varcode/annotators/structural_variant.py' 2026-04-21T03:18:15,266 adding 'varcode/cli/__init__.py' 2026-04-21T03:18:15,268 adding 'varcode/cli/effects_script.py' 2026-04-21T03:18:15,269 adding 'varcode/cli/genes_script.py' 2026-04-21T03:18:15,270 adding 'varcode/cli/logging.conf' 2026-04-21T03:18:15,272 adding 'varcode/cli/variant_args.py' 2026-04-21T03:18:15,273 adding 'varcode/cli/version_info.py' 2026-04-21T03:18:15,275 adding 'varcode/effects/__init__.py' 2026-04-21T03:18:15,277 adding 'varcode/effects/classify.py' 2026-04-21T03:18:15,278 adding 'varcode/effects/codon_tables.py' 2026-04-21T03:18:15,280 adding 'varcode/effects/common.py' 2026-04-21T03:18:15,284 adding 'varcode/effects/effect_classes.py' 2026-04-21T03:18:15,287 adding 'varcode/effects/effect_collection.py' 2026-04-21T03:18:15,289 adding 'varcode/effects/effect_helpers.py' 2026-04-21T03:18:15,292 adding 'varcode/effects/effect_ordering.py' 2026-04-21T03:18:15,295 adding 'varcode/effects/effect_prediction.py' 2026-04-21T03:18:15,297 adding 'varcode/effects/effect_prediction_coding.py' 2026-04-21T03:18:15,299 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-04-21T03:18:15,301 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-04-21T03:18:15,302 adding 'varcode/effects/fast_path.py' 2026-04-21T03:18:15,304 adding 'varcode/effects/mutate.py' 2026-04-21T03:18:15,305 adding 'varcode/effects/transcript_helpers.py' 2026-04-21T03:18:15,307 adding 'varcode/effects/translate.py' 2026-04-21T03:18:15,310 adding 'varcode-4.9.0.dist-info/licenses/LICENSE' 2026-04-21T03:18:15,312 adding 'varcode-4.9.0.dist-info/METADATA' 2026-04-21T03:18:15,313 adding 'varcode-4.9.0.dist-info/WHEEL' 2026-04-21T03:18:15,315 adding 'varcode-4.9.0.dist-info/entry_points.txt' 2026-04-21T03:18:15,315 adding 'varcode-4.9.0.dist-info/top_level.txt' 2026-04-21T03:18:15,317 adding 'varcode-4.9.0.dist-info/RECORD' 2026-04-21T03:18:15,320 removing build/bdist.linux-armv7l/wheel 2026-04-21T03:18:15,432 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-04-21T03:18:15,440 Created wheel for varcode: filename=varcode-4.9.0-py3-none-any.whl size=159460 sha256=eddc36c70b91d2d08a35b352e73613a694f515235abd97b86e5c659f007dd4d1 2026-04-21T03:18:15,441 Stored in directory: /tmp/pip-ephem-wheel-cache-ualt6vao/wheels/c6/fc/26/899e71464a231f6fe1a881d1d2db5b7ad158eafa0d4665a2ea 2026-04-21T03:18:15,454 Successfully built varcode 2026-04-21T03:18:15,462 Removed build tracker: '/tmp/pip-build-tracker-xw7w7fiw'