2026-04-21T10:22:39,728 Created temporary directory: /tmp/pip-ephem-wheel-cache-4_0r0dvt 2026-04-21T10:22:39,730 Created temporary directory: /tmp/pip-build-tracker-kr2hummn 2026-04-21T10:22:39,731 Initialized build tracking at /tmp/pip-build-tracker-kr2hummn 2026-04-21T10:22:39,731 Created build tracker: /tmp/pip-build-tracker-kr2hummn 2026-04-21T10:22:39,731 Entered build tracker: /tmp/pip-build-tracker-kr2hummn 2026-04-21T10:22:39,732 Created temporary directory: /tmp/pip-wheel-i_cf_493 2026-04-21T10:22:39,735 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-21T10:22:39,738 Created temporary directory: /tmp/pip-ephem-wheel-cache-_vah7zgd 2026-04-21T10:22:39,760 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-21T10:22:39,764 2 location(s) to search for versions of multiqc: 2026-04-21T10:22:39,764 * https://pypi.org/simple/multiqc/ 2026-04-21T10:22:39,764 * https://www.piwheels.org/simple/multiqc/ 2026-04-21T10:22:39,764 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2026-04-21T10:22:39,765 Getting page https://pypi.org/simple/multiqc/ 2026-04-21T10:22:39,767 Found index url https://pypi.org/simple 2026-04-21T10:22:39,998 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2026-04-21T10:22:40,014 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2026-04-21T10:22:40,015 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2026-04-21T10:22:40,016 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2026-04-21T10:22:40,016 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2026-04-21T10:22:40,017 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2026-04-21T10:22:40,018 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2026-04-21T10:22:40,019 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2026-04-21T10:22:40,019 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2026-04-21T10:22:40,020 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2026-04-21T10:22:40,021 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2026-04-21T10:22:40,021 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2026-04-21T10:22:40,022 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2026-04-21T10:22:40,023 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2026-04-21T10:22:40,024 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2026-04-21T10:22:40,024 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2026-04-21T10:22:40,025 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2026-04-21T10:22:40,026 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2026-04-21T10:22:40,026 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2026-04-21T10:22:40,027 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from 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permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,031 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2026-04-21T10:22:40,032 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,032 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2026-04-21T10:22:40,033 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,034 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2026-04-21T10:22:40,034 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,035 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2026-04-21T10:22:40,036 Skipping link: No binaries permitted for multiqc: 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https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,039 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2026-04-21T10:22:40,040 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,040 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2026-04-21T10:22:40,041 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,042 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2026-04-21T10:22:40,042 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,043 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2026-04-21T10:22:40,044 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2026-04-21T10:22:40,045 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2026-04-21T10:22:40,045 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-04-21T10:22:40,046 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2026-04-21T10:22:40,047 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/81/bc/5780dd13065676e4b1befca4345e18734a71ebc4f11db0cc1b4b3f325c36/multiqc-1.22-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-04-21T10:22:40,048 Found link https://files.pythonhosted.org/packages/b4/60/ed18675ca283a2c7469308399789240f31f2f6f340ed192f264993361a83/multiqc-1.22.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22 2026-04-21T10:22:40,049 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f6/12/f2dc24575e39d559e759aa02b4fb63d5e1e1a025420d08c497346b229e9c/multiqc-1.22.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-04-21T10:22:40,050 Found link https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.1 2026-04-21T10:22:40,051 Skipping 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version: 1.22.3 2026-04-21T10:22:40,054 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f2/ca/5f71192b9c9e1db785f17be34cfacfbf398ad1d93f0d88c3a7640586db1e/multiqc-1.23-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-04-21T10:22:40,055 Found link https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.23 2026-04-21T10:22:40,056 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/70/47/ba71ed113c96221ce33113baaeac9d75a21e1dd0b5c76eb378ab6a61f87b/multiqc-1.24-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2026-04-21T10:22:40,057 Found link https://files.pythonhosted.org/packages/11/03/990e857673088ee1f15f846a51a3eeca2fc72d50c9ccde44c0469e9a8ef0/multiqc-1.24.tar.gz (from 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2026-04-21T10:22:40,288 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,289 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,289 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,290 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,290 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,291 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,292 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,292 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,292 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,293 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,294 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,294 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,295 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,295 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2026-04-21T10:22:40,296 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2026-04-21T10:22:40,296 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2026-04-21T10:22:40,323 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2026-04-21T10:22:40,343 Collecting multiqc==1.34 2026-04-21T10:22:40,345 Created temporary directory: /tmp/pip-unpack-ww1bq74z 2026-04-21T10:22:40,575 Downloading multiqc-1.34.tar.gz (5.4 MB) 2026-04-21T10:22:43,719 Added multiqc==1.34 from https://files.pythonhosted.org/packages/83/70/f5c44b4dd295db8090d58e2e70a0ab3cda7a259fbd527400a0226919f48c/multiqc-1.34.tar.gz to build tracker '/tmp/pip-build-tracker-kr2hummn' 2026-04-21T10:22:43,730 Created temporary directory: /tmp/pip-build-env-abgk3o4r 2026-04-21T10:22:43,735 Installing build dependencies: started 2026-04-21T10:22:43,736 Running command pip subprocess to install build dependencies 2026-04-21T10:22:44,885 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-21T10:22:45,299 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-21T10:22:45,322 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-21T10:22:47,095 Collecting setuptools 2026-04-21T10:22:47,168 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-21T10:22:50,184 Installing collected packages: setuptools 2026-04-21T10:22:53,210 Successfully installed setuptools-82.0.1 2026-04-21T10:22:53,478 Installing build dependencies: finished with status 'done' 2026-04-21T10:22:53,485 Getting requirements to build wheel: started 2026-04-21T10:22:53,486 Running command Getting requirements to build wheel 2026-04-21T10:22:54,137 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-21T10:22:54,138 !! 2026-04-21T10:22:54,139 ******************************************************************************** 2026-04-21T10:22:54,139 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-21T10:22:54,141 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-21T10:22:54,141 or your builds will no longer be supported. 2026-04-21T10:22:54,143 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:54,143 ******************************************************************************** 2026-04-21T10:22:54,144 !! 2026-04-21T10:22:54,145 corresp(dist, value, root_dir) 2026-04-21T10:22:54,224 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:54,224 !! 2026-04-21T10:22:54,225 ******************************************************************************** 2026-04-21T10:22:54,225 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:54,226 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:54,227 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:54,227 ******************************************************************************** 2026-04-21T10:22:54,228 !! 2026-04-21T10:22:54,229 dist._finalize_license_expression() 2026-04-21T10:22:54,229 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:54,230 !! 2026-04-21T10:22:54,231 ******************************************************************************** 2026-04-21T10:22:54,231 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:54,232 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:54,233 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:54,234 ******************************************************************************** 2026-04-21T10:22:54,235 !! 2026-04-21T10:22:54,236 self._finalize_license_expression() 2026-04-21T10:22:54,237 running egg_info 2026-04-21T10:22:54,244 writing multiqc.egg-info/PKG-INFO 2026-04-21T10:22:54,253 writing dependency_links to multiqc.egg-info/dependency_links.txt 2026-04-21T10:22:54,261 writing entry points to multiqc.egg-info/entry_points.txt 2026-04-21T10:22:54,265 writing requirements to multiqc.egg-info/requires.txt 2026-04-21T10:22:54,266 writing top-level names to multiqc.egg-info/top_level.txt 2026-04-21T10:22:54,287 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:54,433 reading manifest template 'MANIFEST.in' 2026-04-21T10:22:55,077 adding license file 'LICENSE' 2026-04-21T10:22:55,115 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:55,214 Getting requirements to build wheel: finished with status 'done' 2026-04-21T10:22:55,218 Created temporary directory: /tmp/pip-modern-metadata-go5psxgo 2026-04-21T10:22:55,220 Preparing metadata (pyproject.toml): started 2026-04-21T10:22:55,221 Running command Preparing metadata (pyproject.toml) 2026-04-21T10:22:55,802 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-21T10:22:55,802 !! 2026-04-21T10:22:55,803 ******************************************************************************** 2026-04-21T10:22:55,804 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-21T10:22:55,805 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-21T10:22:55,806 or your builds will no longer be supported. 2026-04-21T10:22:55,807 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:55,808 ******************************************************************************** 2026-04-21T10:22:55,809 !! 2026-04-21T10:22:55,810 corresp(dist, value, root_dir) 2026-04-21T10:22:55,885 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:55,885 !! 2026-04-21T10:22:55,886 ******************************************************************************** 2026-04-21T10:22:55,887 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:55,888 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:55,889 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:55,889 ******************************************************************************** 2026-04-21T10:22:55,890 !! 2026-04-21T10:22:55,891 dist._finalize_license_expression() 2026-04-21T10:22:55,892 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:55,893 !! 2026-04-21T10:22:55,894 ******************************************************************************** 2026-04-21T10:22:55,894 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:55,895 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:55,896 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:55,896 ******************************************************************************** 2026-04-21T10:22:55,897 !! 2026-04-21T10:22:55,898 self._finalize_license_expression() 2026-04-21T10:22:55,900 running dist_info 2026-04-21T10:22:55,911 creating /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info 2026-04-21T10:22:55,912 writing /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/PKG-INFO 2026-04-21T10:22:55,922 writing dependency_links to /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/dependency_links.txt 2026-04-21T10:22:55,929 writing entry points to /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/entry_points.txt 2026-04-21T10:22:55,934 writing requirements to /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/requires.txt 2026-04-21T10:22:55,935 writing top-level names to /tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/top_level.txt 2026-04-21T10:22:55,936 writing manifest file '/tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:55,954 reading manifest file '/tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:55,956 reading manifest template 'MANIFEST.in' 2026-04-21T10:22:56,326 adding license file 'LICENSE' 2026-04-21T10:22:56,352 writing manifest file '/tmp/pip-modern-metadata-go5psxgo/multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:56,355 creating '/tmp/pip-modern-metadata-go5psxgo/multiqc-1.34.dist-info' 2026-04-21T10:22:56,487 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-21T10:22:56,500 Source in /tmp/pip-wheel-i_cf_493/multiqc_d76ceada7751461283e47d6452300baf has version 1.34, which satisfies requirement multiqc==1.34 from https://files.pythonhosted.org/packages/83/70/f5c44b4dd295db8090d58e2e70a0ab3cda7a259fbd527400a0226919f48c/multiqc-1.34.tar.gz 2026-04-21T10:22:56,501 Removed multiqc==1.34 from https://files.pythonhosted.org/packages/83/70/f5c44b4dd295db8090d58e2e70a0ab3cda7a259fbd527400a0226919f48c/multiqc-1.34.tar.gz from build tracker '/tmp/pip-build-tracker-kr2hummn' 2026-04-21T10:22:56,522 Created temporary directory: /tmp/pip-unpack-yseedjqp 2026-04-21T10:22:56,523 Building wheels for collected packages: multiqc 2026-04-21T10:22:56,528 Created temporary directory: /tmp/pip-wheel-4itod1k3 2026-04-21T10:22:56,529 Destination directory: /tmp/pip-wheel-4itod1k3 2026-04-21T10:22:56,532 Building wheel for multiqc (pyproject.toml): started 2026-04-21T10:22:56,533 Running command Building wheel for multiqc (pyproject.toml) 2026-04-21T10:22:57,149 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-21T10:22:57,149 !! 2026-04-21T10:22:57,150 ******************************************************************************** 2026-04-21T10:22:57,151 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-21T10:22:57,152 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-21T10:22:57,152 or your builds will no longer be supported. 2026-04-21T10:22:57,153 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:57,154 ******************************************************************************** 2026-04-21T10:22:57,155 !! 2026-04-21T10:22:57,155 corresp(dist, value, root_dir) 2026-04-21T10:22:57,229 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:57,230 !! 2026-04-21T10:22:57,231 ******************************************************************************** 2026-04-21T10:22:57,231 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:57,232 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:57,233 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:57,234 ******************************************************************************** 2026-04-21T10:22:57,235 !! 2026-04-21T10:22:57,236 dist._finalize_license_expression() 2026-04-21T10:22:57,236 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-21T10:22:57,237 !! 2026-04-21T10:22:57,238 ******************************************************************************** 2026-04-21T10:22:57,239 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-21T10:22:57,240 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-21T10:22:57,241 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-21T10:22:57,242 ******************************************************************************** 2026-04-21T10:22:57,243 !! 2026-04-21T10:22:57,244 self._finalize_license_expression() 2026-04-21T10:22:57,244 running bdist_wheel 2026-04-21T10:22:57,254 running build 2026-04-21T10:22:57,255 running build_py 2026-04-21T10:22:57,261 creating build/lib/multiqc 2026-04-21T10:22:57,263 copying multiqc/interactive.py -> build/lib/multiqc 2026-04-21T10:22:57,265 copying multiqc/__init__.py -> build/lib/multiqc 2026-04-21T10:22:57,268 copying multiqc/config.py -> build/lib/multiqc 2026-04-21T10:22:57,270 copying multiqc/base_module.py -> build/lib/multiqc 2026-04-21T10:22:57,273 copying multiqc/multiqc.py -> build/lib/multiqc 2026-04-21T10:22:57,276 copying multiqc/validation.py -> build/lib/multiqc 2026-04-21T10:22:57,278 copying multiqc/__main__.py -> build/lib/multiqc 2026-04-21T10:22:57,280 copying multiqc/report.py -> build/lib/multiqc 2026-04-21T10:22:57,283 copying multiqc/types.py -> build/lib/multiqc 2026-04-21T10:22:57,285 running egg_info 2026-04-21T10:22:57,295 writing multiqc.egg-info/PKG-INFO 2026-04-21T10:22:57,303 writing dependency_links to multiqc.egg-info/dependency_links.txt 2026-04-21T10:22:57,310 writing entry points to multiqc.egg-info/entry_points.txt 2026-04-21T10:22:57,314 writing requirements to multiqc.egg-info/requires.txt 2026-04-21T10:22:57,315 writing top-level names to multiqc.egg-info/top_level.txt 2026-04-21T10:22:57,325 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:57,367 reading manifest template 'MANIFEST.in' 2026-04-21T10:22:57,755 adding license file 'LICENSE' 2026-04-21T10:22:57,791 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2026-04-21T10:22:57,794 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2026-04-21T10:22:57,795 !! 2026-04-21T10:22:57,795 ******************************************************************************** 2026-04-21T10:22:57,796 ############################ 2026-04-21T10:22:57,796 # Package would be ignored # 2026-04-21T10:22:57,797 ############################ 2026-04-21T10:22:57,797 Python recognizes 'multiqc.core' as an importable package[^1], 2026-04-21T10:22:57,798 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,799 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,799 package, please make sure that 'multiqc.core' is explicitly added 2026-04-21T10:22:57,800 to the `packages` configuration field. 2026-04-21T10:22:57,801 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,802 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,803 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,805 If you don't want 'multiqc.core' to be distributed and are 2026-04-21T10:22:57,806 already explicitly excluding 'multiqc.core' via 2026-04-21T10:22:57,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,807 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,808 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,811 even if it does not contain any `.py` files. 2026-04-21T10:22:57,811 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,812 directory, all directories are treated like packages. 2026-04-21T10:22:57,812 ******************************************************************************** 2026-04-21T10:22:57,813 !! 2026-04-21T10:22:57,814 check.warn(importable) 2026-04-21T10:22:57,814 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.core.special_case_modules' is absent from the `packages` configuration. 2026-04-21T10:22:57,815 !! 2026-04-21T10:22:57,816 ******************************************************************************** 2026-04-21T10:22:57,817 ############################ 2026-04-21T10:22:57,817 # Package would be ignored # 2026-04-21T10:22:57,818 ############################ 2026-04-21T10:22:57,818 Python recognizes 'multiqc.core.special_case_modules' as an importable package[^1], 2026-04-21T10:22:57,819 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,820 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,820 package, please make sure that 'multiqc.core.special_case_modules' is explicitly added 2026-04-21T10:22:57,821 to the `packages` configuration field. 2026-04-21T10:22:57,821 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,822 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,823 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,833 If you don't want 'multiqc.core.special_case_modules' to be distributed and are 2026-04-21T10:22:57,833 already explicitly excluding 'multiqc.core.special_case_modules' via 2026-04-21T10:22:57,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,835 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,836 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,837 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,838 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,838 even if it does not contain any `.py` files. 2026-04-21T10:22:57,839 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,840 directory, all directories are treated like packages. 2026-04-21T10:22:57,840 ******************************************************************************** 2026-04-21T10:22:57,841 !! 2026-04-21T10:22:57,842 check.warn(importable) 2026-04-21T10:22:57,842 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2026-04-21T10:22:57,843 !! 2026-04-21T10:22:57,844 ******************************************************************************** 2026-04-21T10:22:57,844 ############################ 2026-04-21T10:22:57,845 # Package would be ignored # 2026-04-21T10:22:57,845 ############################ 2026-04-21T10:22:57,846 Python recognizes 'multiqc.modules' as an importable package[^1], 2026-04-21T10:22:57,847 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,848 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,848 package, please make sure that 'multiqc.modules' is explicitly added 2026-04-21T10:22:57,849 to the `packages` configuration field. 2026-04-21T10:22:57,850 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,851 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,852 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,854 If you don't want 'multiqc.modules' to be distributed and are 2026-04-21T10:22:57,855 already explicitly excluding 'multiqc.modules' via 2026-04-21T10:22:57,856 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,856 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,857 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,858 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,860 even if it does not contain any `.py` files. 2026-04-21T10:22:57,861 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,861 directory, all directories are treated like packages. 2026-04-21T10:22:57,862 ******************************************************************************** 2026-04-21T10:22:57,863 !! 2026-04-21T10:22:57,863 check.warn(importable) 2026-04-21T10:22:57,864 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2026-04-21T10:22:57,864 !! 2026-04-21T10:22:57,865 ******************************************************************************** 2026-04-21T10:22:57,866 ############################ 2026-04-21T10:22:57,866 # Package would be ignored # 2026-04-21T10:22:57,867 ############################ 2026-04-21T10:22:57,867 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2026-04-21T10:22:57,867 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,868 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,869 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2026-04-21T10:22:57,869 to the `packages` configuration field. 2026-04-21T10:22:57,870 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,871 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,872 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,874 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2026-04-21T10:22:57,875 already explicitly excluding 'multiqc.modules.adapterremoval' via 2026-04-21T10:22:57,875 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,876 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,877 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,878 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,879 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,880 even if it does not contain any `.py` files. 2026-04-21T10:22:57,880 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,881 directory, all directories are treated like packages. 2026-04-21T10:22:57,881 ******************************************************************************** 2026-04-21T10:22:57,882 !! 2026-04-21T10:22:57,883 check.warn(importable) 2026-04-21T10:22:57,884 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2026-04-21T10:22:57,884 !! 2026-04-21T10:22:57,885 ******************************************************************************** 2026-04-21T10:22:57,886 ############################ 2026-04-21T10:22:57,886 # Package would be ignored # 2026-04-21T10:22:57,886 ############################ 2026-04-21T10:22:57,887 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2026-04-21T10:22:57,887 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,888 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,888 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2026-04-21T10:22:57,888 to the `packages` configuration field. 2026-04-21T10:22:57,889 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,890 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,891 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,892 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,892 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2026-04-21T10:22:57,893 already explicitly excluding 'multiqc.modules.afterqc' via 2026-04-21T10:22:57,893 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,894 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,895 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,898 even if it does not contain any `.py` files. 2026-04-21T10:22:57,899 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,899 directory, all directories are treated like packages. 2026-04-21T10:22:57,900 ******************************************************************************** 2026-04-21T10:22:57,901 !! 2026-04-21T10:22:57,902 check.warn(importable) 2026-04-21T10:22:57,902 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2026-04-21T10:22:57,903 !! 2026-04-21T10:22:57,904 ******************************************************************************** 2026-04-21T10:22:57,904 ############################ 2026-04-21T10:22:57,904 # Package would be ignored # 2026-04-21T10:22:57,905 ############################ 2026-04-21T10:22:57,905 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2026-04-21T10:22:57,906 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,907 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,907 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2026-04-21T10:22:57,908 to the `packages` configuration field. 2026-04-21T10:22:57,909 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,909 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,910 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,911 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,912 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,913 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2026-04-21T10:22:57,913 already explicitly excluding 'multiqc.modules.anglerfish' via 2026-04-21T10:22:57,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,914 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,914 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,915 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,917 even if it does not contain any `.py` files. 2026-04-21T10:22:57,917 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,917 directory, all directories are treated like packages. 2026-04-21T10:22:57,918 ******************************************************************************** 2026-04-21T10:22:57,919 !! 2026-04-21T10:22:57,919 check.warn(importable) 2026-04-21T10:22:57,919 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ataqv' is absent from the `packages` configuration. 2026-04-21T10:22:57,920 !! 2026-04-21T10:22:57,921 ******************************************************************************** 2026-04-21T10:22:57,921 ############################ 2026-04-21T10:22:57,921 # Package would be ignored # 2026-04-21T10:22:57,922 ############################ 2026-04-21T10:22:57,922 Python recognizes 'multiqc.modules.ataqv' as an importable package[^1], 2026-04-21T10:22:57,923 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,924 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,925 package, please make sure that 'multiqc.modules.ataqv' is explicitly added 2026-04-21T10:22:57,925 to the `packages` configuration field. 2026-04-21T10:22:57,926 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,927 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,928 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,929 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,930 If you don't want 'multiqc.modules.ataqv' to be distributed and are 2026-04-21T10:22:57,931 already explicitly excluding 'multiqc.modules.ataqv' via 2026-04-21T10:22:57,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,931 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,932 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,933 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,934 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,936 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,936 even if it does not contain any `.py` files. 2026-04-21T10:22:57,937 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,937 directory, all directories are treated like packages. 2026-04-21T10:22:57,938 ******************************************************************************** 2026-04-21T10:22:57,939 !! 2026-04-21T10:22:57,939 check.warn(importable) 2026-04-21T10:22:57,939 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2026-04-21T10:22:57,940 !! 2026-04-21T10:22:57,940 ******************************************************************************** 2026-04-21T10:22:57,941 ############################ 2026-04-21T10:22:57,941 # Package would be ignored # 2026-04-21T10:22:57,941 ############################ 2026-04-21T10:22:57,942 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2026-04-21T10:22:57,942 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,943 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,943 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2026-04-21T10:22:57,943 to the `packages` configuration field. 2026-04-21T10:22:57,944 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,945 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,945 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,946 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,947 If you don't want 'multiqc.modules.bakta' to be distributed and are 2026-04-21T10:22:57,948 already explicitly excluding 'multiqc.modules.bakta' via 2026-04-21T10:22:57,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,948 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,949 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,950 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,951 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,953 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,953 even if it does not contain any `.py` files. 2026-04-21T10:22:57,954 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,954 directory, all directories are treated like packages. 2026-04-21T10:22:57,955 ******************************************************************************** 2026-04-21T10:22:57,956 !! 2026-04-21T10:22:57,956 check.warn(importable) 2026-04-21T10:22:57,957 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2026-04-21T10:22:57,957 !! 2026-04-21T10:22:57,958 ******************************************************************************** 2026-04-21T10:22:57,958 ############################ 2026-04-21T10:22:57,959 # Package would be ignored # 2026-04-21T10:22:57,959 ############################ 2026-04-21T10:22:57,960 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2026-04-21T10:22:57,960 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,961 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,962 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2026-04-21T10:22:57,962 to the `packages` configuration field. 2026-04-21T10:22:57,963 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,963 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,964 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,964 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,965 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,966 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2026-04-21T10:22:57,966 already explicitly excluding 'multiqc.modules.bamdst' via 2026-04-21T10:22:57,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,967 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,968 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,970 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,970 even if it does not contain any `.py` files. 2026-04-21T10:22:57,971 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,971 directory, all directories are treated like packages. 2026-04-21T10:22:57,972 ******************************************************************************** 2026-04-21T10:22:57,972 !! 2026-04-21T10:22:57,973 check.warn(importable) 2026-04-21T10:22:57,973 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2026-04-21T10:22:57,974 !! 2026-04-21T10:22:57,975 ******************************************************************************** 2026-04-21T10:22:57,976 ############################ 2026-04-21T10:22:57,976 # Package would be ignored # 2026-04-21T10:22:57,977 ############################ 2026-04-21T10:22:57,977 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2026-04-21T10:22:57,978 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,979 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,979 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2026-04-21T10:22:57,980 to the `packages` configuration field. 2026-04-21T10:22:57,980 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,981 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,982 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:57,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:57,984 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2026-04-21T10:22:57,985 already explicitly excluding 'multiqc.modules.bamtools' via 2026-04-21T10:22:57,985 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:57,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:57,986 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:57,988 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:57,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:57,989 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:57,990 even if it does not contain any `.py` files. 2026-04-21T10:22:57,990 On the other hand, currently there is no concept of package data 2026-04-21T10:22:57,990 directory, all directories are treated like packages. 2026-04-21T10:22:57,991 ******************************************************************************** 2026-04-21T10:22:57,991 !! 2026-04-21T10:22:57,992 check.warn(importable) 2026-04-21T10:22:57,992 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bases2fastq' is absent from the `packages` configuration. 2026-04-21T10:22:57,992 !! 2026-04-21T10:22:57,993 ******************************************************************************** 2026-04-21T10:22:57,993 ############################ 2026-04-21T10:22:57,994 # Package would be ignored # 2026-04-21T10:22:57,994 ############################ 2026-04-21T10:22:57,994 Python recognizes 'multiqc.modules.bases2fastq' as an importable package[^1], 2026-04-21T10:22:57,995 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:57,995 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:57,996 package, please make sure that 'multiqc.modules.bases2fastq' is explicitly added 2026-04-21T10:22:57,996 to the `packages` configuration field. 2026-04-21T10:22:57,997 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:57,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:57,998 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:57,999 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,000 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,002 If you don't want 'multiqc.modules.bases2fastq' to be distributed and are 2026-04-21T10:22:58,002 already explicitly excluding 'multiqc.modules.bases2fastq' via 2026-04-21T10:22:58,003 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,003 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,004 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,005 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,007 even if it does not contain any `.py` files. 2026-04-21T10:22:58,008 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,008 directory, all directories are treated like packages. 2026-04-21T10:22:58,009 ******************************************************************************** 2026-04-21T10:22:58,010 !! 2026-04-21T10:22:58,010 check.warn(importable) 2026-04-21T10:22:58,011 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2026-04-21T10:22:58,011 !! 2026-04-21T10:22:58,012 ******************************************************************************** 2026-04-21T10:22:58,013 ############################ 2026-04-21T10:22:58,013 # Package would be ignored # 2026-04-21T10:22:58,014 ############################ 2026-04-21T10:22:58,014 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2026-04-21T10:22:58,015 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,015 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,016 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2026-04-21T10:22:58,016 to the `packages` configuration field. 2026-04-21T10:22:58,017 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,017 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,018 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,019 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2026-04-21T10:22:58,020 already explicitly excluding 'multiqc.modules.bbduk' via 2026-04-21T10:22:58,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,020 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,021 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,022 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,025 even if it does not contain any `.py` files. 2026-04-21T10:22:58,025 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,026 directory, all directories are treated like packages. 2026-04-21T10:22:58,026 ******************************************************************************** 2026-04-21T10:22:58,027 !! 2026-04-21T10:22:58,028 check.warn(importable) 2026-04-21T10:22:58,028 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2026-04-21T10:22:58,029 !! 2026-04-21T10:22:58,030 ******************************************************************************** 2026-04-21T10:22:58,030 ############################ 2026-04-21T10:22:58,031 # Package would be ignored # 2026-04-21T10:22:58,031 ############################ 2026-04-21T10:22:58,032 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2026-04-21T10:22:58,032 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,033 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,034 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2026-04-21T10:22:58,034 to the `packages` configuration field. 2026-04-21T10:22:58,035 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,036 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,036 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,037 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,039 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2026-04-21T10:22:58,040 already explicitly excluding 'multiqc.modules.bbmap' via 2026-04-21T10:22:58,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,041 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,041 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,042 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,044 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,045 even if it does not contain any `.py` files. 2026-04-21T10:22:58,045 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,045 directory, all directories are treated like packages. 2026-04-21T10:22:58,046 ******************************************************************************** 2026-04-21T10:22:58,046 !! 2026-04-21T10:22:58,047 check.warn(importable) 2026-04-21T10:22:58,047 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2026-04-21T10:22:58,048 !! 2026-04-21T10:22:58,048 ******************************************************************************** 2026-04-21T10:22:58,049 ############################ 2026-04-21T10:22:58,049 # Package would be ignored # 2026-04-21T10:22:58,050 ############################ 2026-04-21T10:22:58,050 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2026-04-21T10:22:58,051 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,052 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,052 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2026-04-21T10:22:58,053 to the `packages` configuration field. 2026-04-21T10:22:58,054 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,055 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,056 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,057 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2026-04-21T10:22:58,058 already explicitly excluding 'multiqc.modules.bcftools' via 2026-04-21T10:22:58,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,059 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,060 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,061 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,063 even if it does not contain any `.py` files. 2026-04-21T10:22:58,063 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,064 directory, all directories are treated like packages. 2026-04-21T10:22:58,065 ******************************************************************************** 2026-04-21T10:22:58,066 !! 2026-04-21T10:22:58,066 check.warn(importable) 2026-04-21T10:22:58,067 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2026-04-21T10:22:58,067 !! 2026-04-21T10:22:58,068 ******************************************************************************** 2026-04-21T10:22:58,068 ############################ 2026-04-21T10:22:58,069 # Package would be ignored # 2026-04-21T10:22:58,069 ############################ 2026-04-21T10:22:58,069 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2026-04-21T10:22:58,070 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,071 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,071 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2026-04-21T10:22:58,071 to the `packages` configuration field. 2026-04-21T10:22:58,072 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,073 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,074 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,075 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2026-04-21T10:22:58,076 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2026-04-21T10:22:58,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,077 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,078 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,079 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,080 even if it does not contain any `.py` files. 2026-04-21T10:22:58,080 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,081 directory, all directories are treated like packages. 2026-04-21T10:22:58,081 ******************************************************************************** 2026-04-21T10:22:58,082 !! 2026-04-21T10:22:58,083 check.warn(importable) 2026-04-21T10:22:58,083 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2026-04-21T10:22:58,084 !! 2026-04-21T10:22:58,085 ******************************************************************************** 2026-04-21T10:22:58,085 ############################ 2026-04-21T10:22:58,085 # Package would be ignored # 2026-04-21T10:22:58,086 ############################ 2026-04-21T10:22:58,086 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2026-04-21T10:22:58,087 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,088 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,088 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2026-04-21T10:22:58,089 to the `packages` configuration field. 2026-04-21T10:22:58,090 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,091 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,092 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,093 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2026-04-21T10:22:58,093 already explicitly excluding 'multiqc.modules.bclconvert' via 2026-04-21T10:22:58,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,094 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,095 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,097 even if it does not contain any `.py` files. 2026-04-21T10:22:58,097 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,098 directory, all directories are treated like packages. 2026-04-21T10:22:58,098 ******************************************************************************** 2026-04-21T10:22:58,099 !! 2026-04-21T10:22:58,099 check.warn(importable) 2026-04-21T10:22:58,100 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2026-04-21T10:22:58,100 !! 2026-04-21T10:22:58,101 ******************************************************************************** 2026-04-21T10:22:58,102 ############################ 2026-04-21T10:22:58,102 # Package would be ignored # 2026-04-21T10:22:58,103 ############################ 2026-04-21T10:22:58,103 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2026-04-21T10:22:58,103 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,105 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,106 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2026-04-21T10:22:58,106 to the `packages` configuration field. 2026-04-21T10:22:58,107 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,108 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,109 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,109 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,110 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2026-04-21T10:22:58,111 already explicitly excluding 'multiqc.modules.biobambam2' via 2026-04-21T10:22:58,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,112 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,113 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,116 even if it does not contain any `.py` files. 2026-04-21T10:22:58,117 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,117 directory, all directories are treated like packages. 2026-04-21T10:22:58,118 ******************************************************************************** 2026-04-21T10:22:58,118 !! 2026-04-21T10:22:58,119 check.warn(importable) 2026-04-21T10:22:58,119 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2026-04-21T10:22:58,119 !! 2026-04-21T10:22:58,120 ******************************************************************************** 2026-04-21T10:22:58,120 ############################ 2026-04-21T10:22:58,121 # Package would be ignored # 2026-04-21T10:22:58,121 ############################ 2026-04-21T10:22:58,121 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2026-04-21T10:22:58,122 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,122 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,123 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2026-04-21T10:22:58,123 to the `packages` configuration field. 2026-04-21T10:22:58,124 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,125 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,126 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,128 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2026-04-21T10:22:58,128 already explicitly excluding 'multiqc.modules.biobloomtools' via 2026-04-21T10:22:58,128 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,129 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,130 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,133 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,133 even if it does not contain any `.py` files. 2026-04-21T10:22:58,134 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,134 directory, all directories are treated like packages. 2026-04-21T10:22:58,135 ******************************************************************************** 2026-04-21T10:22:58,135 !! 2026-04-21T10:22:58,136 check.warn(importable) 2026-04-21T10:22:58,136 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2026-04-21T10:22:58,137 !! 2026-04-21T10:22:58,138 ******************************************************************************** 2026-04-21T10:22:58,138 ############################ 2026-04-21T10:22:58,138 # Package would be ignored # 2026-04-21T10:22:58,139 ############################ 2026-04-21T10:22:58,139 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2026-04-21T10:22:58,140 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,141 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,142 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2026-04-21T10:22:58,142 to the `packages` configuration field. 2026-04-21T10:22:58,143 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,143 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,144 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,145 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2026-04-21T10:22:58,146 already explicitly excluding 'multiqc.modules.biscuit' via 2026-04-21T10:22:58,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,147 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,147 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,150 even if it does not contain any `.py` files. 2026-04-21T10:22:58,150 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,151 directory, all directories are treated like packages. 2026-04-21T10:22:58,152 ******************************************************************************** 2026-04-21T10:22:58,152 !! 2026-04-21T10:22:58,153 check.warn(importable) 2026-04-21T10:22:58,153 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.biscuit.tests' is absent from the `packages` configuration. 2026-04-21T10:22:58,154 !! 2026-04-21T10:22:58,155 ******************************************************************************** 2026-04-21T10:22:58,155 ############################ 2026-04-21T10:22:58,156 # Package would be ignored # 2026-04-21T10:22:58,157 ############################ 2026-04-21T10:22:58,157 Python recognizes 'multiqc.modules.biscuit.tests' as an importable package[^1], 2026-04-21T10:22:58,158 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,158 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,159 package, please make sure that 'multiqc.modules.biscuit.tests' is explicitly added 2026-04-21T10:22:58,159 to the `packages` configuration field. 2026-04-21T10:22:58,160 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,161 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,162 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,164 If you don't want 'multiqc.modules.biscuit.tests' to be distributed and are 2026-04-21T10:22:58,165 already explicitly excluding 'multiqc.modules.biscuit.tests' via 2026-04-21T10:22:58,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,166 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,166 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,167 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,169 even if it does not contain any `.py` files. 2026-04-21T10:22:58,169 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,170 directory, all directories are treated like packages. 2026-04-21T10:22:58,170 ******************************************************************************** 2026-04-21T10:22:58,171 !! 2026-04-21T10:22:58,171 check.warn(importable) 2026-04-21T10:22:58,171 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2026-04-21T10:22:58,172 !! 2026-04-21T10:22:58,172 ******************************************************************************** 2026-04-21T10:22:58,173 ############################ 2026-04-21T10:22:58,173 # Package would be ignored # 2026-04-21T10:22:58,174 ############################ 2026-04-21T10:22:58,174 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2026-04-21T10:22:58,174 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,175 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,176 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2026-04-21T10:22:58,176 to the `packages` configuration field. 2026-04-21T10:22:58,177 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,178 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,180 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,181 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,182 If you don't want 'multiqc.modules.bismark' to be distributed and are 2026-04-21T10:22:58,182 already explicitly excluding 'multiqc.modules.bismark' via 2026-04-21T10:22:58,183 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,183 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,184 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,185 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,187 even if it does not contain any `.py` files. 2026-04-21T10:22:58,188 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,188 directory, all directories are treated like packages. 2026-04-21T10:22:58,189 ******************************************************************************** 2026-04-21T10:22:58,190 !! 2026-04-21T10:22:58,190 check.warn(importable) 2026-04-21T10:22:58,191 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2026-04-21T10:22:58,191 !! 2026-04-21T10:22:58,192 ******************************************************************************** 2026-04-21T10:22:58,192 ############################ 2026-04-21T10:22:58,193 # Package would be ignored # 2026-04-21T10:22:58,193 ############################ 2026-04-21T10:22:58,193 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2026-04-21T10:22:58,194 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,194 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,195 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2026-04-21T10:22:58,195 to the `packages` configuration field. 2026-04-21T10:22:58,196 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,196 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,197 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,199 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2026-04-21T10:22:58,199 already explicitly excluding 'multiqc.modules.bowtie1' via 2026-04-21T10:22:58,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,200 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,201 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,202 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,204 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,204 even if it does not contain any `.py` files. 2026-04-21T10:22:58,205 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,205 directory, all directories are treated like packages. 2026-04-21T10:22:58,205 ******************************************************************************** 2026-04-21T10:22:58,206 !! 2026-04-21T10:22:58,207 check.warn(importable) 2026-04-21T10:22:58,207 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2026-04-21T10:22:58,208 !! 2026-04-21T10:22:58,209 ******************************************************************************** 2026-04-21T10:22:58,209 ############################ 2026-04-21T10:22:58,209 # Package would be ignored # 2026-04-21T10:22:58,210 ############################ 2026-04-21T10:22:58,210 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2026-04-21T10:22:58,211 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,212 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,212 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2026-04-21T10:22:58,212 to the `packages` configuration field. 2026-04-21T10:22:58,213 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,214 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,215 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,217 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,218 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2026-04-21T10:22:58,218 already explicitly excluding 'multiqc.modules.bowtie2' via 2026-04-21T10:22:58,218 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,219 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,219 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,220 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,220 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,222 even if it does not contain any `.py` files. 2026-04-21T10:22:58,222 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,222 directory, all directories are treated like packages. 2026-04-21T10:22:58,223 ******************************************************************************** 2026-04-21T10:22:58,224 !! 2026-04-21T10:22:58,224 check.warn(importable) 2026-04-21T10:22:58,224 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2026-04-21T10:22:58,225 !! 2026-04-21T10:22:58,226 ******************************************************************************** 2026-04-21T10:22:58,226 ############################ 2026-04-21T10:22:58,227 # Package would be ignored # 2026-04-21T10:22:58,227 ############################ 2026-04-21T10:22:58,228 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2026-04-21T10:22:58,228 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,229 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,230 package, please make sure that 'multiqc.modules.busco' is explicitly added 2026-04-21T10:22:58,230 to the `packages` configuration field. 2026-04-21T10:22:58,231 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,232 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,233 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,235 If you don't want 'multiqc.modules.busco' to be distributed and are 2026-04-21T10:22:58,236 already explicitly excluding 'multiqc.modules.busco' via 2026-04-21T10:22:58,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,237 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,239 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,240 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,241 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,242 even if it does not contain any `.py` files. 2026-04-21T10:22:58,242 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,243 directory, all directories are treated like packages. 2026-04-21T10:22:58,244 ******************************************************************************** 2026-04-21T10:22:58,244 !! 2026-04-21T10:22:58,245 check.warn(importable) 2026-04-21T10:22:58,245 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2026-04-21T10:22:58,246 !! 2026-04-21T10:22:58,247 ******************************************************************************** 2026-04-21T10:22:58,247 ############################ 2026-04-21T10:22:58,247 # Package would be ignored # 2026-04-21T10:22:58,248 ############################ 2026-04-21T10:22:58,248 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2026-04-21T10:22:58,249 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,250 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,250 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2026-04-21T10:22:58,251 to the `packages` configuration field. 2026-04-21T10:22:58,252 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,252 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,253 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,254 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,255 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,256 If you don't want 'multiqc.modules.bustools' to be distributed and are 2026-04-21T10:22:58,257 already explicitly excluding 'multiqc.modules.bustools' via 2026-04-21T10:22:58,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,259 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,261 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,262 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,264 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,265 even if it does not contain any `.py` files. 2026-04-21T10:22:58,266 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,267 directory, all directories are treated like packages. 2026-04-21T10:22:58,267 ******************************************************************************** 2026-04-21T10:22:58,268 !! 2026-04-21T10:22:58,268 check.warn(importable) 2026-04-21T10:22:58,269 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2026-04-21T10:22:58,269 !! 2026-04-21T10:22:58,270 ******************************************************************************** 2026-04-21T10:22:58,271 ############################ 2026-04-21T10:22:58,271 # Package would be ignored # 2026-04-21T10:22:58,272 ############################ 2026-04-21T10:22:58,272 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2026-04-21T10:22:58,273 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,274 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,275 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2026-04-21T10:22:58,275 to the `packages` configuration field. 2026-04-21T10:22:58,276 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,277 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,277 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,278 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,279 If you don't want 'multiqc.modules.ccs' to be distributed and are 2026-04-21T10:22:58,280 already explicitly excluding 'multiqc.modules.ccs' via 2026-04-21T10:22:58,280 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,281 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,281 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,282 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,282 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,284 even if it does not contain any `.py` files. 2026-04-21T10:22:58,284 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,285 directory, all directories are treated like packages. 2026-04-21T10:22:58,285 ******************************************************************************** 2026-04-21T10:22:58,286 !! 2026-04-21T10:22:58,286 check.warn(importable) 2026-04-21T10:22:58,287 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ccs.tests' is absent from the `packages` configuration. 2026-04-21T10:22:58,287 !! 2026-04-21T10:22:58,288 ******************************************************************************** 2026-04-21T10:22:58,289 ############################ 2026-04-21T10:22:58,290 # Package would be ignored # 2026-04-21T10:22:58,290 ############################ 2026-04-21T10:22:58,291 Python recognizes 'multiqc.modules.ccs.tests' as an importable package[^1], 2026-04-21T10:22:58,291 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,292 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,293 package, please make sure that 'multiqc.modules.ccs.tests' is explicitly added 2026-04-21T10:22:58,293 to the `packages` configuration field. 2026-04-21T10:22:58,294 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,295 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,296 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,297 If you don't want 'multiqc.modules.ccs.tests' to be distributed and are 2026-04-21T10:22:58,298 already explicitly excluding 'multiqc.modules.ccs.tests' via 2026-04-21T10:22:58,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,299 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,301 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,302 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,303 even if it does not contain any `.py` files. 2026-04-21T10:22:58,303 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,303 directory, all directories are treated like packages. 2026-04-21T10:22:58,304 ******************************************************************************** 2026-04-21T10:22:58,304 !! 2026-04-21T10:22:58,305 check.warn(importable) 2026-04-21T10:22:58,305 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2026-04-21T10:22:58,305 !! 2026-04-21T10:22:58,306 ******************************************************************************** 2026-04-21T10:22:58,307 ############################ 2026-04-21T10:22:58,307 # Package would be ignored # 2026-04-21T10:22:58,307 ############################ 2026-04-21T10:22:58,308 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2026-04-21T10:22:58,308 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,309 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,309 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2026-04-21T10:22:58,309 to the `packages` configuration field. 2026-04-21T10:22:58,310 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,311 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,311 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,313 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,314 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,314 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2026-04-21T10:22:58,315 already explicitly excluding 'multiqc.modules.cellranger' via 2026-04-21T10:22:58,315 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,316 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,316 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,318 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,319 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,321 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,321 even if it does not contain any `.py` files. 2026-04-21T10:22:58,322 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,322 directory, all directories are treated like packages. 2026-04-21T10:22:58,323 ******************************************************************************** 2026-04-21T10:22:58,324 !! 2026-04-21T10:22:58,325 check.warn(importable) 2026-04-21T10:22:58,325 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger_arc' is absent from the `packages` configuration. 2026-04-21T10:22:58,326 !! 2026-04-21T10:22:58,327 ******************************************************************************** 2026-04-21T10:22:58,328 ############################ 2026-04-21T10:22:58,328 # Package would be ignored # 2026-04-21T10:22:58,329 ############################ 2026-04-21T10:22:58,330 Python recognizes 'multiqc.modules.cellranger_arc' as an importable package[^1], 2026-04-21T10:22:58,331 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,332 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,332 package, please make sure that 'multiqc.modules.cellranger_arc' is explicitly added 2026-04-21T10:22:58,333 to the `packages` configuration field. 2026-04-21T10:22:58,334 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,335 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,336 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,338 If you don't want 'multiqc.modules.cellranger_arc' to be distributed and are 2026-04-21T10:22:58,338 already explicitly excluding 'multiqc.modules.cellranger_arc' via 2026-04-21T10:22:58,339 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,340 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,340 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,341 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,342 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,345 even if it does not contain any `.py` files. 2026-04-21T10:22:58,346 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,347 directory, all directories are treated like packages. 2026-04-21T10:22:58,347 ******************************************************************************** 2026-04-21T10:22:58,348 !! 2026-04-21T10:22:58,349 check.warn(importable) 2026-04-21T10:22:58,350 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cellranger_arc.tests' is absent from the `packages` configuration. 2026-04-21T10:22:58,350 !! 2026-04-21T10:22:58,352 ******************************************************************************** 2026-04-21T10:22:58,352 ############################ 2026-04-21T10:22:58,353 # Package would be ignored # 2026-04-21T10:22:58,354 ############################ 2026-04-21T10:22:58,354 Python recognizes 'multiqc.modules.cellranger_arc.tests' as an importable package[^1], 2026-04-21T10:22:58,355 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,356 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,357 package, please make sure that 'multiqc.modules.cellranger_arc.tests' is explicitly added 2026-04-21T10:22:58,357 to the `packages` configuration field. 2026-04-21T10:22:58,358 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,360 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,361 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,364 If you don't want 'multiqc.modules.cellranger_arc.tests' to be distributed and are 2026-04-21T10:22:58,364 already explicitly excluding 'multiqc.modules.cellranger_arc.tests' via 2026-04-21T10:22:58,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,366 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,367 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,369 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,370 even if it does not contain any `.py` files. 2026-04-21T10:22:58,370 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,371 directory, all directories are treated like packages. 2026-04-21T10:22:58,371 ******************************************************************************** 2026-04-21T10:22:58,372 !! 2026-04-21T10:22:58,373 check.warn(importable) 2026-04-21T10:22:58,373 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cells2stats' is absent from the `packages` configuration. 2026-04-21T10:22:58,374 !! 2026-04-21T10:22:58,375 ******************************************************************************** 2026-04-21T10:22:58,375 ############################ 2026-04-21T10:22:58,376 # Package would be ignored # 2026-04-21T10:22:58,377 ############################ 2026-04-21T10:22:58,377 Python recognizes 'multiqc.modules.cells2stats' as an importable package[^1], 2026-04-21T10:22:58,378 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,379 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,380 package, please make sure that 'multiqc.modules.cells2stats' is explicitly added 2026-04-21T10:22:58,380 to the `packages` configuration field. 2026-04-21T10:22:58,382 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,382 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,383 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,384 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,386 If you don't want 'multiqc.modules.cells2stats' to be distributed and are 2026-04-21T10:22:58,387 already explicitly excluding 'multiqc.modules.cells2stats' via 2026-04-21T10:22:58,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,389 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,390 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,394 even if it does not contain any `.py` files. 2026-04-21T10:22:58,394 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,395 directory, all directories are treated like packages. 2026-04-21T10:22:58,396 ******************************************************************************** 2026-04-21T10:22:58,397 !! 2026-04-21T10:22:58,398 check.warn(importable) 2026-04-21T10:22:58,398 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkm' is absent from the `packages` configuration. 2026-04-21T10:22:58,399 !! 2026-04-21T10:22:58,400 ******************************************************************************** 2026-04-21T10:22:58,400 ############################ 2026-04-21T10:22:58,400 # Package would be ignored # 2026-04-21T10:22:58,401 ############################ 2026-04-21T10:22:58,401 Python recognizes 'multiqc.modules.checkm' as an importable package[^1], 2026-04-21T10:22:58,402 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,403 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,403 package, please make sure that 'multiqc.modules.checkm' is explicitly added 2026-04-21T10:22:58,404 to the `packages` configuration field. 2026-04-21T10:22:58,405 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,406 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,407 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,408 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,409 If you don't want 'multiqc.modules.checkm' to be distributed and are 2026-04-21T10:22:58,410 already explicitly excluding 'multiqc.modules.checkm' via 2026-04-21T10:22:58,410 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,412 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,413 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,414 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,417 even if it does not contain any `.py` files. 2026-04-21T10:22:58,418 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,418 directory, all directories are treated like packages. 2026-04-21T10:22:58,419 ******************************************************************************** 2026-04-21T10:22:58,420 !! 2026-04-21T10:22:58,421 check.warn(importable) 2026-04-21T10:22:58,421 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkm2' is absent from the `packages` configuration. 2026-04-21T10:22:58,424 !! 2026-04-21T10:22:58,425 ******************************************************************************** 2026-04-21T10:22:58,426 ############################ 2026-04-21T10:22:58,426 # Package would be ignored # 2026-04-21T10:22:58,427 ############################ 2026-04-21T10:22:58,427 Python recognizes 'multiqc.modules.checkm2' as an importable package[^1], 2026-04-21T10:22:58,428 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,429 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,430 package, please make sure that 'multiqc.modules.checkm2' is explicitly added 2026-04-21T10:22:58,431 to the `packages` configuration field. 2026-04-21T10:22:58,432 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,434 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,435 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,436 If you don't want 'multiqc.modules.checkm2' to be distributed and are 2026-04-21T10:22:58,437 already explicitly excluding 'multiqc.modules.checkm2' via 2026-04-21T10:22:58,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,438 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,439 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,440 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,442 even if it does not contain any `.py` files. 2026-04-21T10:22:58,442 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,443 directory, all directories are treated like packages. 2026-04-21T10:22:58,443 ******************************************************************************** 2026-04-21T10:22:58,444 !! 2026-04-21T10:22:58,445 check.warn(importable) 2026-04-21T10:22:58,445 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2026-04-21T10:22:58,446 !! 2026-04-21T10:22:58,447 ******************************************************************************** 2026-04-21T10:22:58,448 ############################ 2026-04-21T10:22:58,448 # Package would be ignored # 2026-04-21T10:22:58,449 ############################ 2026-04-21T10:22:58,450 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2026-04-21T10:22:58,450 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,452 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,452 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2026-04-21T10:22:58,453 to the `packages` configuration field. 2026-04-21T10:22:58,454 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,455 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,456 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,457 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,458 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2026-04-21T10:22:58,459 already explicitly excluding 'multiqc.modules.checkqc' via 2026-04-21T10:22:58,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,461 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,462 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,466 even if it does not contain any `.py` files. 2026-04-21T10:22:58,467 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,467 directory, all directories are treated like packages. 2026-04-21T10:22:58,468 ******************************************************************************** 2026-04-21T10:22:58,468 !! 2026-04-21T10:22:58,469 check.warn(importable) 2026-04-21T10:22:58,469 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2026-04-21T10:22:58,470 !! 2026-04-21T10:22:58,471 ******************************************************************************** 2026-04-21T10:22:58,471 ############################ 2026-04-21T10:22:58,472 # Package would be ignored # 2026-04-21T10:22:58,472 ############################ 2026-04-21T10:22:58,473 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2026-04-21T10:22:58,473 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,474 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,474 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2026-04-21T10:22:58,475 to the `packages` configuration field. 2026-04-21T10:22:58,476 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,477 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,478 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,481 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2026-04-21T10:22:58,481 already explicitly excluding 'multiqc.modules.clipandmerge' via 2026-04-21T10:22:58,482 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,482 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,483 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,484 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,488 even if it does not contain any `.py` files. 2026-04-21T10:22:58,488 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,489 directory, all directories are treated like packages. 2026-04-21T10:22:58,489 ******************************************************************************** 2026-04-21T10:22:58,491 !! 2026-04-21T10:22:58,491 check.warn(importable) 2026-04-21T10:22:58,492 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2026-04-21T10:22:58,492 !! 2026-04-21T10:22:58,493 ******************************************************************************** 2026-04-21T10:22:58,494 ############################ 2026-04-21T10:22:58,495 # Package would be ignored # 2026-04-21T10:22:58,495 ############################ 2026-04-21T10:22:58,496 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2026-04-21T10:22:58,497 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,498 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,499 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2026-04-21T10:22:58,499 to the `packages` configuration field. 2026-04-21T10:22:58,500 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,501 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,502 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,504 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2026-04-21T10:22:58,504 already explicitly excluding 'multiqc.modules.clusterflow' via 2026-04-21T10:22:58,505 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,505 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,506 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,507 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,508 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,509 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,510 even if it does not contain any `.py` files. 2026-04-21T10:22:58,511 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,511 directory, all directories are treated like packages. 2026-04-21T10:22:58,512 ******************************************************************************** 2026-04-21T10:22:58,513 !! 2026-04-21T10:22:58,514 check.warn(importable) 2026-04-21T10:22:58,515 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2026-04-21T10:22:58,515 !! 2026-04-21T10:22:58,516 ******************************************************************************** 2026-04-21T10:22:58,517 ############################ 2026-04-21T10:22:58,518 # Package would be ignored # 2026-04-21T10:22:58,518 ############################ 2026-04-21T10:22:58,519 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2026-04-21T10:22:58,520 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,521 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,521 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2026-04-21T10:22:58,522 to the `packages` configuration field. 2026-04-21T10:22:58,523 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,524 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,525 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,527 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,528 If you don't want 'multiqc.modules.conpair' to be distributed and are 2026-04-21T10:22:58,529 already explicitly excluding 'multiqc.modules.conpair' via 2026-04-21T10:22:58,529 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,530 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,531 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,532 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,534 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,535 even if it does not contain any `.py` files. 2026-04-21T10:22:58,535 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,536 directory, all directories are treated like packages. 2026-04-21T10:22:58,536 ******************************************************************************** 2026-04-21T10:22:58,537 !! 2026-04-21T10:22:58,537 check.warn(importable) 2026-04-21T10:22:58,538 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2026-04-21T10:22:58,538 !! 2026-04-21T10:22:58,539 ******************************************************************************** 2026-04-21T10:22:58,540 ############################ 2026-04-21T10:22:58,540 # Package would be ignored # 2026-04-21T10:22:58,541 ############################ 2026-04-21T10:22:58,541 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2026-04-21T10:22:58,542 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,543 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,543 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2026-04-21T10:22:58,544 to the `packages` configuration field. 2026-04-21T10:22:58,545 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,547 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,548 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,549 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,551 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2026-04-21T10:22:58,551 already explicitly excluding 'multiqc.modules.cutadapt' via 2026-04-21T10:22:58,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,553 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,554 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,557 even if it does not contain any `.py` files. 2026-04-21T10:22:58,558 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,559 directory, all directories are treated like packages. 2026-04-21T10:22:58,559 ******************************************************************************** 2026-04-21T10:22:58,561 !! 2026-04-21T10:22:58,561 check.warn(importable) 2026-04-21T10:22:58,562 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2026-04-21T10:22:58,562 !! 2026-04-21T10:22:58,564 ******************************************************************************** 2026-04-21T10:22:58,564 ############################ 2026-04-21T10:22:58,565 # Package would be ignored # 2026-04-21T10:22:58,565 ############################ 2026-04-21T10:22:58,566 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2026-04-21T10:22:58,566 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,567 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,567 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2026-04-21T10:22:58,568 to the `packages` configuration field. 2026-04-21T10:22:58,569 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,570 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,571 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,572 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2026-04-21T10:22:58,573 already explicitly excluding 'multiqc.modules.damageprofiler' via 2026-04-21T10:22:58,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,575 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,576 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,577 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,579 even if it does not contain any `.py` files. 2026-04-21T10:22:58,580 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,581 directory, all directories are treated like packages. 2026-04-21T10:22:58,581 ******************************************************************************** 2026-04-21T10:22:58,582 !! 2026-04-21T10:22:58,583 check.warn(importable) 2026-04-21T10:22:58,583 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2026-04-21T10:22:58,584 !! 2026-04-21T10:22:58,585 ******************************************************************************** 2026-04-21T10:22:58,586 ############################ 2026-04-21T10:22:58,586 # Package would be ignored # 2026-04-21T10:22:58,587 ############################ 2026-04-21T10:22:58,587 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2026-04-21T10:22:58,588 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,589 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,590 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2026-04-21T10:22:58,590 to the `packages` configuration field. 2026-04-21T10:22:58,592 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,593 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,594 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,596 If you don't want 'multiqc.modules.dedup' to be distributed and are 2026-04-21T10:22:58,596 already explicitly excluding 'multiqc.modules.dedup' via 2026-04-21T10:22:58,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,598 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,599 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,602 even if it does not contain any `.py` files. 2026-04-21T10:22:58,602 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,603 directory, all directories are treated like packages. 2026-04-21T10:22:58,604 ******************************************************************************** 2026-04-21T10:22:58,605 !! 2026-04-21T10:22:58,605 check.warn(importable) 2026-04-21T10:22:58,606 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2026-04-21T10:22:58,606 !! 2026-04-21T10:22:58,607 ******************************************************************************** 2026-04-21T10:22:58,608 ############################ 2026-04-21T10:22:58,609 # Package would be ignored # 2026-04-21T10:22:58,609 ############################ 2026-04-21T10:22:58,610 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2026-04-21T10:22:58,611 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,612 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,613 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2026-04-21T10:22:58,613 to the `packages` configuration field. 2026-04-21T10:22:58,615 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,616 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,616 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,617 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,620 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2026-04-21T10:22:58,620 already explicitly excluding 'multiqc.modules.deeptools' via 2026-04-21T10:22:58,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,622 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,623 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,625 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,627 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,627 even if it does not contain any `.py` files. 2026-04-21T10:22:58,628 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,629 directory, all directories are treated like packages. 2026-04-21T10:22:58,629 ******************************************************************************** 2026-04-21T10:22:58,630 !! 2026-04-21T10:22:58,631 check.warn(importable) 2026-04-21T10:22:58,631 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2026-04-21T10:22:58,632 !! 2026-04-21T10:22:58,633 ******************************************************************************** 2026-04-21T10:22:58,633 ############################ 2026-04-21T10:22:58,634 # Package would be ignored # 2026-04-21T10:22:58,634 ############################ 2026-04-21T10:22:58,635 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2026-04-21T10:22:58,635 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,636 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,637 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2026-04-21T10:22:58,637 to the `packages` configuration field. 2026-04-21T10:22:58,638 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,638 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,639 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,640 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,641 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,643 If you don't want 'multiqc.modules.diamond' to be distributed and are 2026-04-21T10:22:58,643 already explicitly excluding 'multiqc.modules.diamond' via 2026-04-21T10:22:58,644 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,644 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,645 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,646 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,650 even if it does not contain any `.py` files. 2026-04-21T10:22:58,651 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,651 directory, all directories are treated like packages. 2026-04-21T10:22:58,652 ******************************************************************************** 2026-04-21T10:22:58,653 !! 2026-04-21T10:22:58,654 check.warn(importable) 2026-04-21T10:22:58,655 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2026-04-21T10:22:58,656 !! 2026-04-21T10:22:58,657 ******************************************************************************** 2026-04-21T10:22:58,658 ############################ 2026-04-21T10:22:58,658 # Package would be ignored # 2026-04-21T10:22:58,659 ############################ 2026-04-21T10:22:58,660 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2026-04-21T10:22:58,660 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,661 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,662 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2026-04-21T10:22:58,663 to the `packages` configuration field. 2026-04-21T10:22:58,664 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,665 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,667 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,668 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,669 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2026-04-21T10:22:58,670 already explicitly excluding 'multiqc.modules.disambiguate' via 2026-04-21T10:22:58,670 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,671 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,672 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,673 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,676 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,676 even if it does not contain any `.py` files. 2026-04-21T10:22:58,677 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,677 directory, all directories are treated like packages. 2026-04-21T10:22:58,678 ******************************************************************************** 2026-04-21T10:22:58,679 !! 2026-04-21T10:22:58,680 check.warn(importable) 2026-04-21T10:22:58,680 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2026-04-21T10:22:58,681 !! 2026-04-21T10:22:58,682 ******************************************************************************** 2026-04-21T10:22:58,682 ############################ 2026-04-21T10:22:58,683 # Package would be ignored # 2026-04-21T10:22:58,684 ############################ 2026-04-21T10:22:58,684 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2026-04-21T10:22:58,685 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,686 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,687 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2026-04-21T10:22:58,687 to the `packages` configuration field. 2026-04-21T10:22:58,688 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,690 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,691 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,692 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,694 If you don't want 'multiqc.modules.dragen' to be distributed and are 2026-04-21T10:22:58,694 already explicitly excluding 'multiqc.modules.dragen' via 2026-04-21T10:22:58,695 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,696 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,698 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,699 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,701 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,701 even if it does not contain any `.py` files. 2026-04-21T10:22:58,702 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,702 directory, all directories are treated like packages. 2026-04-21T10:22:58,703 ******************************************************************************** 2026-04-21T10:22:58,704 !! 2026-04-21T10:22:58,704 check.warn(importable) 2026-04-21T10:22:58,705 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen.tests' is absent from the `packages` configuration. 2026-04-21T10:22:58,705 !! 2026-04-21T10:22:58,706 ******************************************************************************** 2026-04-21T10:22:58,706 ############################ 2026-04-21T10:22:58,707 # Package would be ignored # 2026-04-21T10:22:58,707 ############################ 2026-04-21T10:22:58,708 Python recognizes 'multiqc.modules.dragen.tests' as an importable package[^1], 2026-04-21T10:22:58,708 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,709 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,710 package, please make sure that 'multiqc.modules.dragen.tests' is explicitly added 2026-04-21T10:22:58,710 to the `packages` configuration field. 2026-04-21T10:22:58,711 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,713 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,714 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,716 If you don't want 'multiqc.modules.dragen.tests' to be distributed and are 2026-04-21T10:22:58,717 already explicitly excluding 'multiqc.modules.dragen.tests' via 2026-04-21T10:22:58,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,718 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,720 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,721 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,722 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,723 even if it does not contain any `.py` files. 2026-04-21T10:22:58,723 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,724 directory, all directories are treated like packages. 2026-04-21T10:22:58,724 ******************************************************************************** 2026-04-21T10:22:58,726 !! 2026-04-21T10:22:58,726 check.warn(importable) 2026-04-21T10:22:58,727 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2026-04-21T10:22:58,727 !! 2026-04-21T10:22:58,729 ******************************************************************************** 2026-04-21T10:22:58,729 ############################ 2026-04-21T10:22:58,730 # Package would be ignored # 2026-04-21T10:22:58,731 ############################ 2026-04-21T10:22:58,731 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2026-04-21T10:22:58,732 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,733 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,733 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2026-04-21T10:22:58,733 to the `packages` configuration field. 2026-04-21T10:22:58,734 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,735 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,735 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,736 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,737 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,738 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2026-04-21T10:22:58,739 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2026-04-21T10:22:58,739 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,739 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,740 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,741 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,742 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,744 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,745 even if it does not contain any `.py` files. 2026-04-21T10:22:58,745 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,746 directory, all directories are treated like packages. 2026-04-21T10:22:58,747 ******************************************************************************** 2026-04-21T10:22:58,748 !! 2026-04-21T10:22:58,748 check.warn(importable) 2026-04-21T10:22:58,749 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2026-04-21T10:22:58,750 !! 2026-04-21T10:22:58,751 ******************************************************************************** 2026-04-21T10:22:58,751 ############################ 2026-04-21T10:22:58,752 # Package would be ignored # 2026-04-21T10:22:58,752 ############################ 2026-04-21T10:22:58,753 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2026-04-21T10:22:58,753 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,754 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,755 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2026-04-21T10:22:58,755 to the `packages` configuration field. 2026-04-21T10:22:58,757 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,758 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,759 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,762 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2026-04-21T10:22:58,762 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2026-04-21T10:22:58,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,763 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,764 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,767 even if it does not contain any `.py` files. 2026-04-21T10:22:58,767 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,768 directory, all directories are treated like packages. 2026-04-21T10:22:58,768 ******************************************************************************** 2026-04-21T10:22:58,769 !! 2026-04-21T10:22:58,770 check.warn(importable) 2026-04-21T10:22:58,770 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2026-04-21T10:22:58,771 !! 2026-04-21T10:22:58,772 ******************************************************************************** 2026-04-21T10:22:58,772 ############################ 2026-04-21T10:22:58,773 # Package would be ignored # 2026-04-21T10:22:58,773 ############################ 2026-04-21T10:22:58,774 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2026-04-21T10:22:58,775 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,776 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,777 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2026-04-21T10:22:58,777 to the `packages` configuration field. 2026-04-21T10:22:58,779 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,780 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,781 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,783 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,784 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2026-04-21T10:22:58,784 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2026-04-21T10:22:58,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,786 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,786 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,788 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,789 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,791 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,791 even if it does not contain any `.py` files. 2026-04-21T10:22:58,792 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,793 directory, all directories are treated like packages. 2026-04-21T10:22:58,793 ******************************************************************************** 2026-04-21T10:22:58,795 !! 2026-04-21T10:22:58,795 check.warn(importable) 2026-04-21T10:22:58,796 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2026-04-21T10:22:58,796 !! 2026-04-21T10:22:58,797 ******************************************************************************** 2026-04-21T10:22:58,797 ############################ 2026-04-21T10:22:58,798 # Package would be ignored # 2026-04-21T10:22:58,798 ############################ 2026-04-21T10:22:58,799 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2026-04-21T10:22:58,799 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,800 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,801 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2026-04-21T10:22:58,801 to the `packages` configuration field. 2026-04-21T10:22:58,802 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,803 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,803 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,804 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,807 If you don't want 'multiqc.modules.fastp' to be distributed and are 2026-04-21T10:22:58,807 already explicitly excluding 'multiqc.modules.fastp' via 2026-04-21T10:22:58,808 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,809 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,810 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,814 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,814 even if it does not contain any `.py` files. 2026-04-21T10:22:58,815 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,816 directory, all directories are treated like packages. 2026-04-21T10:22:58,816 ******************************************************************************** 2026-04-21T10:22:58,817 !! 2026-04-21T10:22:58,818 check.warn(importable) 2026-04-21T10:22:58,819 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2026-04-21T10:22:58,819 !! 2026-04-21T10:22:58,820 ******************************************************************************** 2026-04-21T10:22:58,821 ############################ 2026-04-21T10:22:58,821 # Package would be ignored # 2026-04-21T10:22:58,822 ############################ 2026-04-21T10:22:58,823 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2026-04-21T10:22:58,823 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,825 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,825 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2026-04-21T10:22:58,826 to the `packages` configuration field. 2026-04-21T10:22:58,827 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,828 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,829 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,831 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2026-04-21T10:22:58,831 already explicitly excluding 'multiqc.modules.fastq_screen' via 2026-04-21T10:22:58,832 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,832 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,833 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,834 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,836 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,837 even if it does not contain any `.py` files. 2026-04-21T10:22:58,837 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,837 directory, all directories are treated like packages. 2026-04-21T10:22:58,838 ******************************************************************************** 2026-04-21T10:22:58,839 !! 2026-04-21T10:22:58,840 check.warn(importable) 2026-04-21T10:22:58,840 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2026-04-21T10:22:58,841 !! 2026-04-21T10:22:58,842 ******************************************************************************** 2026-04-21T10:22:58,843 ############################ 2026-04-21T10:22:58,844 # Package would be ignored # 2026-04-21T10:22:58,844 ############################ 2026-04-21T10:22:58,845 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2026-04-21T10:22:58,845 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,847 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,847 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2026-04-21T10:22:58,848 to the `packages` configuration field. 2026-04-21T10:22:58,849 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,850 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,851 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,852 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,853 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2026-04-21T10:22:58,854 already explicitly excluding 'multiqc.modules.fastqc' via 2026-04-21T10:22:58,855 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,856 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,857 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,860 even if it does not contain any `.py` files. 2026-04-21T10:22:58,861 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,861 directory, all directories are treated like packages. 2026-04-21T10:22:58,862 ******************************************************************************** 2026-04-21T10:22:58,862 !! 2026-04-21T10:22:58,863 check.warn(importable) 2026-04-21T10:22:58,863 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2026-04-21T10:22:58,864 !! 2026-04-21T10:22:58,865 ******************************************************************************** 2026-04-21T10:22:58,865 ############################ 2026-04-21T10:22:58,865 # Package would be ignored # 2026-04-21T10:22:58,866 ############################ 2026-04-21T10:22:58,866 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2026-04-21T10:22:58,867 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,868 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,868 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2026-04-21T10:22:58,869 to the `packages` configuration field. 2026-04-21T10:22:58,870 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,871 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,873 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,874 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,875 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2026-04-21T10:22:58,876 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2026-04-21T10:22:58,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,878 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,879 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,880 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,881 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,882 even if it does not contain any `.py` files. 2026-04-21T10:22:58,882 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,883 directory, all directories are treated like packages. 2026-04-21T10:22:58,884 ******************************************************************************** 2026-04-21T10:22:58,885 !! 2026-04-21T10:22:58,885 check.warn(importable) 2026-04-21T10:22:58,886 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2026-04-21T10:22:58,887 !! 2026-04-21T10:22:58,888 ******************************************************************************** 2026-04-21T10:22:58,888 ############################ 2026-04-21T10:22:58,889 # Package would be ignored # 2026-04-21T10:22:58,890 ############################ 2026-04-21T10:22:58,890 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2026-04-21T10:22:58,891 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,892 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,892 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2026-04-21T10:22:58,892 to the `packages` configuration field. 2026-04-21T10:22:58,893 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,894 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,895 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,896 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,897 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2026-04-21T10:22:58,897 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2026-04-21T10:22:58,898 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,898 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,899 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,900 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,903 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,903 even if it does not contain any `.py` files. 2026-04-21T10:22:58,904 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,905 directory, all directories are treated like packages. 2026-04-21T10:22:58,905 ******************************************************************************** 2026-04-21T10:22:58,907 !! 2026-04-21T10:22:58,907 check.warn(importable) 2026-04-21T10:22:58,908 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2026-04-21T10:22:58,908 !! 2026-04-21T10:22:58,910 ******************************************************************************** 2026-04-21T10:22:58,910 ############################ 2026-04-21T10:22:58,911 # Package would be ignored # 2026-04-21T10:22:58,911 ############################ 2026-04-21T10:22:58,912 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2026-04-21T10:22:58,912 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,913 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,914 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2026-04-21T10:22:58,915 to the `packages` configuration field. 2026-04-21T10:22:58,916 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,916 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,917 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,918 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,920 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,921 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2026-04-21T10:22:58,921 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2026-04-21T10:22:58,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,923 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,924 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,926 even if it does not contain any `.py` files. 2026-04-21T10:22:58,927 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,927 directory, all directories are treated like packages. 2026-04-21T10:22:58,928 ******************************************************************************** 2026-04-21T10:22:58,928 !! 2026-04-21T10:22:58,929 check.warn(importable) 2026-04-21T10:22:58,929 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.featurecounts' is absent from the `packages` configuration. 2026-04-21T10:22:58,930 !! 2026-04-21T10:22:58,931 ******************************************************************************** 2026-04-21T10:22:58,932 ############################ 2026-04-21T10:22:58,932 # Package would be ignored # 2026-04-21T10:22:58,933 ############################ 2026-04-21T10:22:58,933 Python recognizes 'multiqc.modules.featurecounts' as an importable package[^1], 2026-04-21T10:22:58,934 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,935 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,936 package, please make sure that 'multiqc.modules.featurecounts' is explicitly added 2026-04-21T10:22:58,937 to the `packages` configuration field. 2026-04-21T10:22:58,938 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,939 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,940 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,941 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,942 If you don't want 'multiqc.modules.featurecounts' to be distributed and are 2026-04-21T10:22:58,943 already explicitly excluding 'multiqc.modules.featurecounts' via 2026-04-21T10:22:58,943 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,944 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,945 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,946 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,947 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,949 even if it does not contain any `.py` files. 2026-04-21T10:22:58,950 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,950 directory, all directories are treated like packages. 2026-04-21T10:22:58,951 ******************************************************************************** 2026-04-21T10:22:58,952 !! 2026-04-21T10:22:58,953 check.warn(importable) 2026-04-21T10:22:58,953 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2026-04-21T10:22:58,954 !! 2026-04-21T10:22:58,955 ******************************************************************************** 2026-04-21T10:22:58,955 ############################ 2026-04-21T10:22:58,956 # Package would be ignored # 2026-04-21T10:22:58,956 ############################ 2026-04-21T10:22:58,957 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2026-04-21T10:22:58,957 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,958 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,959 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2026-04-21T10:22:58,959 to the `packages` configuration field. 2026-04-21T10:22:58,960 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,961 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,962 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,964 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2026-04-21T10:22:58,965 already explicitly excluding 'multiqc.modules.fgbio' via 2026-04-21T10:22:58,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,967 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,968 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,970 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,971 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,972 even if it does not contain any `.py` files. 2026-04-21T10:22:58,973 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,973 directory, all directories are treated like packages. 2026-04-21T10:22:58,974 ******************************************************************************** 2026-04-21T10:22:58,975 !! 2026-04-21T10:22:58,976 check.warn(importable) 2026-04-21T10:22:58,976 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2026-04-21T10:22:58,977 !! 2026-04-21T10:22:58,978 ******************************************************************************** 2026-04-21T10:22:58,979 ############################ 2026-04-21T10:22:58,979 # Package would be ignored # 2026-04-21T10:22:58,980 ############################ 2026-04-21T10:22:58,980 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2026-04-21T10:22:58,981 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:58,982 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:58,983 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2026-04-21T10:22:58,984 to the `packages` configuration field. 2026-04-21T10:22:58,985 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:58,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:58,986 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:58,987 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:58,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:58,989 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2026-04-21T10:22:58,989 already explicitly excluding 'multiqc.modules.filtlong' via 2026-04-21T10:22:58,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:58,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:58,991 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:58,992 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:58,993 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:58,994 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:58,995 even if it does not contain any `.py` files. 2026-04-21T10:22:58,995 On the other hand, currently there is no concept of package data 2026-04-21T10:22:58,996 directory, all directories are treated like packages. 2026-04-21T10:22:58,996 ******************************************************************************** 2026-04-21T10:22:58,997 !! 2026-04-21T10:22:58,998 check.warn(importable) 2026-04-21T10:22:58,998 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2026-04-21T10:22:58,999 !! 2026-04-21T10:22:59,001 ******************************************************************************** 2026-04-21T10:22:59,001 ############################ 2026-04-21T10:22:59,002 # Package would be ignored # 2026-04-21T10:22:59,003 ############################ 2026-04-21T10:22:59,003 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2026-04-21T10:22:59,004 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,005 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,006 package, please make sure that 'multiqc.modules.flash' is explicitly added 2026-04-21T10:22:59,007 to the `packages` configuration field. 2026-04-21T10:22:59,008 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,009 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,010 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,011 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,012 If you don't want 'multiqc.modules.flash' to be distributed and are 2026-04-21T10:22:59,013 already explicitly excluding 'multiqc.modules.flash' via 2026-04-21T10:22:59,013 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,014 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,016 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,017 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,018 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,019 even if it does not contain any `.py` files. 2026-04-21T10:22:59,019 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,020 directory, all directories are treated like packages. 2026-04-21T10:22:59,020 ******************************************************************************** 2026-04-21T10:22:59,021 !! 2026-04-21T10:22:59,021 check.warn(importable) 2026-04-21T10:22:59,022 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2026-04-21T10:22:59,022 !! 2026-04-21T10:22:59,023 ******************************************************************************** 2026-04-21T10:22:59,024 ############################ 2026-04-21T10:22:59,024 # Package would be ignored # 2026-04-21T10:22:59,025 ############################ 2026-04-21T10:22:59,025 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2026-04-21T10:22:59,026 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,027 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,027 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2026-04-21T10:22:59,028 to the `packages` configuration field. 2026-04-21T10:22:59,029 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,030 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,031 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,035 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2026-04-21T10:22:59,036 already explicitly excluding 'multiqc.modules.flexbar' via 2026-04-21T10:22:59,037 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,037 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,038 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,039 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,043 even if it does not contain any `.py` files. 2026-04-21T10:22:59,043 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,044 directory, all directories are treated like packages. 2026-04-21T10:22:59,045 ******************************************************************************** 2026-04-21T10:22:59,046 !! 2026-04-21T10:22:59,046 check.warn(importable) 2026-04-21T10:22:59,047 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2026-04-21T10:22:59,049 !! 2026-04-21T10:22:59,050 ******************************************************************************** 2026-04-21T10:22:59,051 ############################ 2026-04-21T10:22:59,052 # Package would be ignored # 2026-04-21T10:22:59,052 ############################ 2026-04-21T10:22:59,053 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2026-04-21T10:22:59,054 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,055 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,055 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2026-04-21T10:22:59,056 to the `packages` configuration field. 2026-04-21T10:22:59,057 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,057 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,058 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,059 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,060 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,061 If you don't want 'multiqc.modules.freyja' to be distributed and are 2026-04-21T10:22:59,062 already explicitly excluding 'multiqc.modules.freyja' via 2026-04-21T10:22:59,062 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,063 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,064 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,065 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,066 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,068 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,068 even if it does not contain any `.py` files. 2026-04-21T10:22:59,069 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,069 directory, all directories are treated like packages. 2026-04-21T10:22:59,070 ******************************************************************************** 2026-04-21T10:22:59,071 !! 2026-04-21T10:22:59,071 check.warn(importable) 2026-04-21T10:22:59,072 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ganon' is absent from the `packages` configuration. 2026-04-21T10:22:59,073 !! 2026-04-21T10:22:59,074 ******************************************************************************** 2026-04-21T10:22:59,074 ############################ 2026-04-21T10:22:59,075 # Package would be ignored # 2026-04-21T10:22:59,075 ############################ 2026-04-21T10:22:59,076 Python recognizes 'multiqc.modules.ganon' as an importable package[^1], 2026-04-21T10:22:59,077 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,078 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,079 package, please make sure that 'multiqc.modules.ganon' is explicitly added 2026-04-21T10:22:59,079 to the `packages` configuration field. 2026-04-21T10:22:59,081 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,082 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,084 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,088 If you don't want 'multiqc.modules.ganon' to be distributed and are 2026-04-21T10:22:59,089 already explicitly excluding 'multiqc.modules.ganon' via 2026-04-21T10:22:59,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,093 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,095 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,099 even if it does not contain any `.py` files. 2026-04-21T10:22:59,099 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,100 directory, all directories are treated like packages. 2026-04-21T10:22:59,101 ******************************************************************************** 2026-04-21T10:22:59,102 !! 2026-04-21T10:22:59,102 check.warn(importable) 2026-04-21T10:22:59,103 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2026-04-21T10:22:59,103 !! 2026-04-21T10:22:59,104 ******************************************************************************** 2026-04-21T10:22:59,104 ############################ 2026-04-21T10:22:59,105 # Package would be ignored # 2026-04-21T10:22:59,105 ############################ 2026-04-21T10:22:59,106 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2026-04-21T10:22:59,107 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,108 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,108 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2026-04-21T10:22:59,109 to the `packages` configuration field. 2026-04-21T10:22:59,110 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,111 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,111 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,113 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,114 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,115 If you don't want 'multiqc.modules.gatk' to be distributed and are 2026-04-21T10:22:59,116 already explicitly excluding 'multiqc.modules.gatk' via 2026-04-21T10:22:59,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,117 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,119 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,120 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,122 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,122 even if it does not contain any `.py` files. 2026-04-21T10:22:59,123 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,123 directory, all directories are treated like packages. 2026-04-21T10:22:59,124 ******************************************************************************** 2026-04-21T10:22:59,125 !! 2026-04-21T10:22:59,125 check.warn(importable) 2026-04-21T10:22:59,126 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2026-04-21T10:22:59,127 !! 2026-04-21T10:22:59,128 ******************************************************************************** 2026-04-21T10:22:59,128 ############################ 2026-04-21T10:22:59,129 # Package would be ignored # 2026-04-21T10:22:59,129 ############################ 2026-04-21T10:22:59,130 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2026-04-21T10:22:59,130 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,131 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,131 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2026-04-21T10:22:59,132 to the `packages` configuration field. 2026-04-21T10:22:59,133 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,133 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,134 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,135 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,136 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,137 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2026-04-21T10:22:59,137 already explicitly excluding 'multiqc.modules.gffcompare' via 2026-04-21T10:22:59,138 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,138 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,139 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,140 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,143 even if it does not contain any `.py` files. 2026-04-21T10:22:59,144 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,144 directory, all directories are treated like packages. 2026-04-21T10:22:59,145 ******************************************************************************** 2026-04-21T10:22:59,149 !! 2026-04-21T10:22:59,150 check.warn(importable) 2026-04-21T10:22:59,150 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.glimpse' is absent from the `packages` configuration. 2026-04-21T10:22:59,151 !! 2026-04-21T10:22:59,152 ******************************************************************************** 2026-04-21T10:22:59,153 ############################ 2026-04-21T10:22:59,154 # Package would be ignored # 2026-04-21T10:22:59,154 ############################ 2026-04-21T10:22:59,155 Python recognizes 'multiqc.modules.glimpse' as an importable package[^1], 2026-04-21T10:22:59,155 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,156 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,157 package, please make sure that 'multiqc.modules.glimpse' is explicitly added 2026-04-21T10:22:59,157 to the `packages` configuration field. 2026-04-21T10:22:59,159 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,160 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,162 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,164 If you don't want 'multiqc.modules.glimpse' to be distributed and are 2026-04-21T10:22:59,164 already explicitly excluding 'multiqc.modules.glimpse' via 2026-04-21T10:22:59,164 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,165 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,166 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,167 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,169 even if it does not contain any `.py` files. 2026-04-21T10:22:59,170 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,170 directory, all directories are treated like packages. 2026-04-21T10:22:59,171 ******************************************************************************** 2026-04-21T10:22:59,172 !! 2026-04-21T10:22:59,172 check.warn(importable) 2026-04-21T10:22:59,173 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2026-04-21T10:22:59,173 !! 2026-04-21T10:22:59,175 ******************************************************************************** 2026-04-21T10:22:59,175 ############################ 2026-04-21T10:22:59,176 # Package would be ignored # 2026-04-21T10:22:59,176 ############################ 2026-04-21T10:22:59,177 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2026-04-21T10:22:59,178 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,179 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,179 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2026-04-21T10:22:59,180 to the `packages` configuration field. 2026-04-21T10:22:59,181 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,183 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,184 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,186 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2026-04-21T10:22:59,187 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2026-04-21T10:22:59,188 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,189 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,190 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,191 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,193 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,194 even if it does not contain any `.py` files. 2026-04-21T10:22:59,195 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,195 directory, all directories are treated like packages. 2026-04-21T10:22:59,196 ******************************************************************************** 2026-04-21T10:22:59,197 !! 2026-04-21T10:22:59,198 check.warn(importable) 2026-04-21T10:22:59,198 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2026-04-21T10:22:59,199 !! 2026-04-21T10:22:59,200 ******************************************************************************** 2026-04-21T10:22:59,200 ############################ 2026-04-21T10:22:59,201 # Package would be ignored # 2026-04-21T10:22:59,201 ############################ 2026-04-21T10:22:59,202 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2026-04-21T10:22:59,202 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,203 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,204 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2026-04-21T10:22:59,204 to the `packages` configuration field. 2026-04-21T10:22:59,205 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,206 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,207 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,208 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,210 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2026-04-21T10:22:59,210 already explicitly excluding 'multiqc.modules.gopeaks' via 2026-04-21T10:22:59,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,212 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,214 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,215 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,217 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,218 even if it does not contain any `.py` files. 2026-04-21T10:22:59,219 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,219 directory, all directories are treated like packages. 2026-04-21T10:22:59,220 ******************************************************************************** 2026-04-21T10:22:59,221 !! 2026-04-21T10:22:59,222 check.warn(importable) 2026-04-21T10:22:59,222 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.gtdbtk' is absent from the `packages` configuration. 2026-04-21T10:22:59,223 !! 2026-04-21T10:22:59,224 ******************************************************************************** 2026-04-21T10:22:59,225 ############################ 2026-04-21T10:22:59,225 # Package would be ignored # 2026-04-21T10:22:59,226 ############################ 2026-04-21T10:22:59,226 Python recognizes 'multiqc.modules.gtdbtk' as an importable package[^1], 2026-04-21T10:22:59,227 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,229 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,229 package, please make sure that 'multiqc.modules.gtdbtk' is explicitly added 2026-04-21T10:22:59,230 to the `packages` configuration field. 2026-04-21T10:22:59,231 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,232 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,233 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,235 If you don't want 'multiqc.modules.gtdbtk' to be distributed and are 2026-04-21T10:22:59,235 already explicitly excluding 'multiqc.modules.gtdbtk' via 2026-04-21T10:22:59,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,237 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,238 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,240 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,243 even if it does not contain any `.py` files. 2026-04-21T10:22:59,244 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,244 directory, all directories are treated like packages. 2026-04-21T10:22:59,245 ******************************************************************************** 2026-04-21T10:22:59,246 !! 2026-04-21T10:22:59,247 check.warn(importable) 2026-04-21T10:22:59,247 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.haplocheck' is absent from the `packages` configuration. 2026-04-21T10:22:59,248 !! 2026-04-21T10:22:59,249 ******************************************************************************** 2026-04-21T10:22:59,249 ############################ 2026-04-21T10:22:59,250 # Package would be ignored # 2026-04-21T10:22:59,250 ############################ 2026-04-21T10:22:59,251 Python recognizes 'multiqc.modules.haplocheck' as an importable package[^1], 2026-04-21T10:22:59,252 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,253 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,254 package, please make sure that 'multiqc.modules.haplocheck' is explicitly added 2026-04-21T10:22:59,254 to the `packages` configuration field. 2026-04-21T10:22:59,255 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,256 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,256 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,257 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,258 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,260 If you don't want 'multiqc.modules.haplocheck' to be distributed and are 2026-04-21T10:22:59,260 already explicitly excluding 'multiqc.modules.haplocheck' via 2026-04-21T10:22:59,261 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,261 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,262 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,263 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,264 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,266 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,266 even if it does not contain any `.py` files. 2026-04-21T10:22:59,267 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,267 directory, all directories are treated like packages. 2026-04-21T10:22:59,268 ******************************************************************************** 2026-04-21T10:22:59,269 !! 2026-04-21T10:22:59,269 check.warn(importable) 2026-04-21T10:22:59,270 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2026-04-21T10:22:59,270 !! 2026-04-21T10:22:59,271 ******************************************************************************** 2026-04-21T10:22:59,272 ############################ 2026-04-21T10:22:59,272 # Package would be ignored # 2026-04-21T10:22:59,273 ############################ 2026-04-21T10:22:59,273 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2026-04-21T10:22:59,274 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,275 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,276 package, please make sure that 'multiqc.modules.happy' is explicitly added 2026-04-21T10:22:59,276 to the `packages` configuration field. 2026-04-21T10:22:59,277 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,279 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,280 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,281 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,282 If you don't want 'multiqc.modules.happy' to be distributed and are 2026-04-21T10:22:59,283 already explicitly excluding 'multiqc.modules.happy' via 2026-04-21T10:22:59,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,285 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,286 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,289 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,290 even if it does not contain any `.py` files. 2026-04-21T10:22:59,290 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,291 directory, all directories are treated like packages. 2026-04-21T10:22:59,292 ******************************************************************************** 2026-04-21T10:22:59,293 !! 2026-04-21T10:22:59,294 check.warn(importable) 2026-04-21T10:22:59,294 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2026-04-21T10:22:59,295 !! 2026-04-21T10:22:59,296 ******************************************************************************** 2026-04-21T10:22:59,297 ############################ 2026-04-21T10:22:59,298 # Package would be ignored # 2026-04-21T10:22:59,299 ############################ 2026-04-21T10:22:59,299 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2026-04-21T10:22:59,300 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,301 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,301 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2026-04-21T10:22:59,302 to the `packages` configuration field. 2026-04-21T10:22:59,303 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,303 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,304 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,305 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,307 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2026-04-21T10:22:59,307 already explicitly excluding 'multiqc.modules.hicexplorer' via 2026-04-21T10:22:59,308 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,308 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,309 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,310 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,311 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,313 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,314 even if it does not contain any `.py` files. 2026-04-21T10:22:59,314 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,315 directory, all directories are treated like packages. 2026-04-21T10:22:59,316 ******************************************************************************** 2026-04-21T10:22:59,317 !! 2026-04-21T10:22:59,318 check.warn(importable) 2026-04-21T10:22:59,319 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2026-04-21T10:22:59,319 !! 2026-04-21T10:22:59,321 ******************************************************************************** 2026-04-21T10:22:59,321 ############################ 2026-04-21T10:22:59,322 # Package would be ignored # 2026-04-21T10:22:59,322 ############################ 2026-04-21T10:22:59,323 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2026-04-21T10:22:59,323 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,324 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,324 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2026-04-21T10:22:59,325 to the `packages` configuration field. 2026-04-21T10:22:59,326 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,327 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,328 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,329 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,331 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2026-04-21T10:22:59,332 already explicitly excluding 'multiqc.modules.hicpro' via 2026-04-21T10:22:59,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,333 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,333 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,336 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,337 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,338 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,338 even if it does not contain any `.py` files. 2026-04-21T10:22:59,339 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,339 directory, all directories are treated like packages. 2026-04-21T10:22:59,339 ******************************************************************************** 2026-04-21T10:22:59,340 !! 2026-04-21T10:22:59,341 check.warn(importable) 2026-04-21T10:22:59,341 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2026-04-21T10:22:59,341 !! 2026-04-21T10:22:59,342 ******************************************************************************** 2026-04-21T10:22:59,343 ############################ 2026-04-21T10:22:59,343 # Package would be ignored # 2026-04-21T10:22:59,344 ############################ 2026-04-21T10:22:59,344 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2026-04-21T10:22:59,345 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,346 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,346 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2026-04-21T10:22:59,347 to the `packages` configuration field. 2026-04-21T10:22:59,348 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,349 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,350 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,351 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,352 If you don't want 'multiqc.modules.hicup' to be distributed and are 2026-04-21T10:22:59,353 already explicitly excluding 'multiqc.modules.hicup' via 2026-04-21T10:22:59,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,354 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,355 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,356 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,357 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,358 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,359 even if it does not contain any `.py` files. 2026-04-21T10:22:59,359 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,360 directory, all directories are treated like packages. 2026-04-21T10:22:59,360 ******************************************************************************** 2026-04-21T10:22:59,362 !! 2026-04-21T10:22:59,362 check.warn(importable) 2026-04-21T10:22:59,363 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2026-04-21T10:22:59,363 !! 2026-04-21T10:22:59,364 ******************************************************************************** 2026-04-21T10:22:59,364 ############################ 2026-04-21T10:22:59,365 # Package would be ignored # 2026-04-21T10:22:59,365 ############################ 2026-04-21T10:22:59,365 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2026-04-21T10:22:59,366 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,366 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,367 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2026-04-21T10:22:59,367 to the `packages` configuration field. 2026-04-21T10:22:59,368 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,369 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,370 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,371 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2026-04-21T10:22:59,372 already explicitly excluding 'multiqc.modules.hifiasm' via 2026-04-21T10:22:59,372 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,373 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,375 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,376 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,377 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,378 even if it does not contain any `.py` files. 2026-04-21T10:22:59,378 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,379 directory, all directories are treated like packages. 2026-04-21T10:22:59,379 ******************************************************************************** 2026-04-21T10:22:59,380 !! 2026-04-21T10:22:59,381 check.warn(importable) 2026-04-21T10:22:59,381 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2026-04-21T10:22:59,382 !! 2026-04-21T10:22:59,383 ******************************************************************************** 2026-04-21T10:22:59,383 ############################ 2026-04-21T10:22:59,384 # Package would be ignored # 2026-04-21T10:22:59,384 ############################ 2026-04-21T10:22:59,385 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2026-04-21T10:22:59,385 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,386 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,387 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2026-04-21T10:22:59,387 to the `packages` configuration field. 2026-04-21T10:22:59,388 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,390 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,391 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,392 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2026-04-21T10:22:59,392 already explicitly excluding 'multiqc.modules.hisat2' via 2026-04-21T10:22:59,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,393 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,394 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,395 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,396 even if it does not contain any `.py` files. 2026-04-21T10:22:59,397 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,397 directory, all directories are treated like packages. 2026-04-21T10:22:59,397 ******************************************************************************** 2026-04-21T10:22:59,398 !! 2026-04-21T10:22:59,398 check.warn(importable) 2026-04-21T10:22:59,399 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2026-04-21T10:22:59,399 !! 2026-04-21T10:22:59,400 ******************************************************************************** 2026-04-21T10:22:59,401 ############################ 2026-04-21T10:22:59,402 # Package would be ignored # 2026-04-21T10:22:59,402 ############################ 2026-04-21T10:22:59,403 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2026-04-21T10:22:59,403 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,404 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,405 package, please make sure that 'multiqc.modules.homer' is explicitly added 2026-04-21T10:22:59,406 to the `packages` configuration field. 2026-04-21T10:22:59,407 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,407 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,408 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,409 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,410 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,410 If you don't want 'multiqc.modules.homer' to be distributed and are 2026-04-21T10:22:59,411 already explicitly excluding 'multiqc.modules.homer' via 2026-04-21T10:22:59,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,414 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,415 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,419 even if it does not contain any `.py` files. 2026-04-21T10:22:59,419 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,420 directory, all directories are treated like packages. 2026-04-21T10:22:59,420 ******************************************************************************** 2026-04-21T10:22:59,421 !! 2026-04-21T10:22:59,421 check.warn(importable) 2026-04-21T10:22:59,422 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2026-04-21T10:22:59,422 !! 2026-04-21T10:22:59,423 ******************************************************************************** 2026-04-21T10:22:59,423 ############################ 2026-04-21T10:22:59,424 # Package would be ignored # 2026-04-21T10:22:59,424 ############################ 2026-04-21T10:22:59,425 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2026-04-21T10:22:59,425 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,426 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,426 package, please make sure that 'multiqc.modules.hops' is explicitly added 2026-04-21T10:22:59,427 to the `packages` configuration field. 2026-04-21T10:22:59,428 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,429 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,430 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,430 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,431 If you don't want 'multiqc.modules.hops' to be distributed and are 2026-04-21T10:22:59,432 already explicitly excluding 'multiqc.modules.hops' via 2026-04-21T10:22:59,432 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,433 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,433 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,434 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,437 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,438 even if it does not contain any `.py` files. 2026-04-21T10:22:59,438 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,439 directory, all directories are treated like packages. 2026-04-21T10:22:59,439 ******************************************************************************** 2026-04-21T10:22:59,440 !! 2026-04-21T10:22:59,441 check.warn(importable) 2026-04-21T10:22:59,441 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2026-04-21T10:22:59,442 !! 2026-04-21T10:22:59,443 ******************************************************************************** 2026-04-21T10:22:59,444 ############################ 2026-04-21T10:22:59,444 # Package would be ignored # 2026-04-21T10:22:59,445 ############################ 2026-04-21T10:22:59,446 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2026-04-21T10:22:59,447 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,449 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,449 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2026-04-21T10:22:59,450 to the `packages` configuration field. 2026-04-21T10:22:59,451 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,452 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,453 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,455 If you don't want 'multiqc.modules.hostile' to be distributed and are 2026-04-21T10:22:59,456 already explicitly excluding 'multiqc.modules.hostile' via 2026-04-21T10:22:59,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,457 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,458 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,461 even if it does not contain any `.py` files. 2026-04-21T10:22:59,462 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,462 directory, all directories are treated like packages. 2026-04-21T10:22:59,463 ******************************************************************************** 2026-04-21T10:22:59,464 !! 2026-04-21T10:22:59,464 check.warn(importable) 2026-04-21T10:22:59,465 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2026-04-21T10:22:59,465 !! 2026-04-21T10:22:59,466 ******************************************************************************** 2026-04-21T10:22:59,467 ############################ 2026-04-21T10:22:59,467 # Package would be ignored # 2026-04-21T10:22:59,468 ############################ 2026-04-21T10:22:59,468 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2026-04-21T10:22:59,469 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,470 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,471 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2026-04-21T10:22:59,471 to the `packages` configuration field. 2026-04-21T10:22:59,472 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,473 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,473 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,474 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,475 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,476 If you don't want 'multiqc.modules.htseq' to be distributed and are 2026-04-21T10:22:59,477 already explicitly excluding 'multiqc.modules.htseq' via 2026-04-21T10:22:59,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,478 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,479 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,481 even if it does not contain any `.py` files. 2026-04-21T10:22:59,482 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,482 directory, all directories are treated like packages. 2026-04-21T10:22:59,483 ******************************************************************************** 2026-04-21T10:22:59,483 !! 2026-04-21T10:22:59,484 check.warn(importable) 2026-04-21T10:22:59,484 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2026-04-21T10:22:59,484 !! 2026-04-21T10:22:59,485 ******************************************************************************** 2026-04-21T10:22:59,485 ############################ 2026-04-21T10:22:59,486 # Package would be ignored # 2026-04-21T10:22:59,486 ############################ 2026-04-21T10:22:59,487 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2026-04-21T10:22:59,487 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,488 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,488 package, please make sure that 'multiqc.modules.humid' is explicitly added 2026-04-21T10:22:59,489 to the `packages` configuration field. 2026-04-21T10:22:59,490 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,490 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,491 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,492 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,493 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,494 If you don't want 'multiqc.modules.humid' to be distributed and are 2026-04-21T10:22:59,495 already explicitly excluding 'multiqc.modules.humid' via 2026-04-21T10:22:59,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,497 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,498 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,500 even if it does not contain any `.py` files. 2026-04-21T10:22:59,501 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,501 directory, all directories are treated like packages. 2026-04-21T10:22:59,502 ******************************************************************************** 2026-04-21T10:22:59,503 !! 2026-04-21T10:22:59,503 check.warn(importable) 2026-04-21T10:22:59,504 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2026-04-21T10:22:59,505 !! 2026-04-21T10:22:59,506 ******************************************************************************** 2026-04-21T10:22:59,506 ############################ 2026-04-21T10:22:59,507 # Package would be ignored # 2026-04-21T10:22:59,507 ############################ 2026-04-21T10:22:59,508 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2026-04-21T10:22:59,508 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,509 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,509 package, please make sure that 'multiqc.modules.interop' is explicitly added 2026-04-21T10:22:59,509 to the `packages` configuration field. 2026-04-21T10:22:59,510 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,511 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,511 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,512 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,513 If you don't want 'multiqc.modules.interop' to be distributed and are 2026-04-21T10:22:59,514 already explicitly excluding 'multiqc.modules.interop' via 2026-04-21T10:22:59,514 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,515 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,515 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,516 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,518 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,518 even if it does not contain any `.py` files. 2026-04-21T10:22:59,519 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,519 directory, all directories are treated like packages. 2026-04-21T10:22:59,520 ******************************************************************************** 2026-04-21T10:22:59,521 !! 2026-04-21T10:22:59,521 check.warn(importable) 2026-04-21T10:22:59,522 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2026-04-21T10:22:59,523 !! 2026-04-21T10:22:59,524 ******************************************************************************** 2026-04-21T10:22:59,524 ############################ 2026-04-21T10:22:59,525 # Package would be ignored # 2026-04-21T10:22:59,525 ############################ 2026-04-21T10:22:59,525 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2026-04-21T10:22:59,526 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,527 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,527 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2026-04-21T10:22:59,528 to the `packages` configuration field. 2026-04-21T10:22:59,529 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,530 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,531 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,533 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2026-04-21T10:22:59,533 already explicitly excluding 'multiqc.modules.isoseq' via 2026-04-21T10:22:59,534 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,534 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,534 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,535 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,537 even if it does not contain any `.py` files. 2026-04-21T10:22:59,538 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,538 directory, all directories are treated like packages. 2026-04-21T10:22:59,538 ******************************************************************************** 2026-04-21T10:22:59,539 !! 2026-04-21T10:22:59,539 check.warn(importable) 2026-04-21T10:22:59,540 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2026-04-21T10:22:59,540 !! 2026-04-21T10:22:59,541 ******************************************************************************** 2026-04-21T10:22:59,541 ############################ 2026-04-21T10:22:59,542 # Package would be ignored # 2026-04-21T10:22:59,542 ############################ 2026-04-21T10:22:59,543 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2026-04-21T10:22:59,543 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,544 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,544 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2026-04-21T10:22:59,545 to the `packages` configuration field. 2026-04-21T10:22:59,546 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,547 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,548 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,558 If you don't want 'multiqc.modules.ivar' to be distributed and are 2026-04-21T10:22:59,558 already explicitly excluding 'multiqc.modules.ivar' via 2026-04-21T10:22:59,559 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,560 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,560 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,561 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,563 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,563 even if it does not contain any `.py` files. 2026-04-21T10:22:59,564 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,565 directory, all directories are treated like packages. 2026-04-21T10:22:59,565 ******************************************************************************** 2026-04-21T10:22:59,566 !! 2026-04-21T10:22:59,567 check.warn(importable) 2026-04-21T10:22:59,567 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2026-04-21T10:22:59,567 !! 2026-04-21T10:22:59,568 ******************************************************************************** 2026-04-21T10:22:59,568 ############################ 2026-04-21T10:22:59,569 # Package would be ignored # 2026-04-21T10:22:59,569 ############################ 2026-04-21T10:22:59,569 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2026-04-21T10:22:59,570 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,570 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,571 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2026-04-21T10:22:59,571 to the `packages` configuration field. 2026-04-21T10:22:59,572 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,573 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,573 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,575 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2026-04-21T10:22:59,576 already explicitly excluding 'multiqc.modules.jcvi' via 2026-04-21T10:22:59,576 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,577 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,578 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,581 even if it does not contain any `.py` files. 2026-04-21T10:22:59,581 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,582 directory, all directories are treated like packages. 2026-04-21T10:22:59,582 ******************************************************************************** 2026-04-21T10:22:59,583 !! 2026-04-21T10:22:59,584 check.warn(importable) 2026-04-21T10:22:59,584 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2026-04-21T10:22:59,585 !! 2026-04-21T10:22:59,586 ******************************************************************************** 2026-04-21T10:22:59,586 ############################ 2026-04-21T10:22:59,587 # Package would be ignored # 2026-04-21T10:22:59,587 ############################ 2026-04-21T10:22:59,587 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2026-04-21T10:22:59,588 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,589 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,589 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2026-04-21T10:22:59,590 to the `packages` configuration field. 2026-04-21T10:22:59,591 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,592 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,593 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,595 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2026-04-21T10:22:59,595 already explicitly excluding 'multiqc.modules.jellyfish' via 2026-04-21T10:22:59,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,596 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,596 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,597 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,599 even if it does not contain any `.py` files. 2026-04-21T10:22:59,599 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,600 directory, all directories are treated like packages. 2026-04-21T10:22:59,600 ******************************************************************************** 2026-04-21T10:22:59,601 !! 2026-04-21T10:22:59,601 check.warn(importable) 2026-04-21T10:22:59,602 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2026-04-21T10:22:59,602 !! 2026-04-21T10:22:59,603 ******************************************************************************** 2026-04-21T10:22:59,604 ############################ 2026-04-21T10:22:59,604 # Package would be ignored # 2026-04-21T10:22:59,605 ############################ 2026-04-21T10:22:59,605 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2026-04-21T10:22:59,606 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,607 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,607 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2026-04-21T10:22:59,608 to the `packages` configuration field. 2026-04-21T10:22:59,609 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,609 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,610 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,611 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,611 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,612 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2026-04-21T10:22:59,613 already explicitly excluding 'multiqc.modules.kaiju' via 2026-04-21T10:22:59,613 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,614 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,615 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,616 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,618 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,618 even if it does not contain any `.py` files. 2026-04-21T10:22:59,619 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,619 directory, all directories are treated like packages. 2026-04-21T10:22:59,619 ******************************************************************************** 2026-04-21T10:22:59,620 !! 2026-04-21T10:22:59,620 check.warn(importable) 2026-04-21T10:22:59,620 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2026-04-21T10:22:59,621 !! 2026-04-21T10:22:59,621 ******************************************************************************** 2026-04-21T10:22:59,622 ############################ 2026-04-21T10:22:59,622 # Package would be ignored # 2026-04-21T10:22:59,622 ############################ 2026-04-21T10:22:59,623 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2026-04-21T10:22:59,623 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,624 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,624 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2026-04-21T10:22:59,625 to the `packages` configuration field. 2026-04-21T10:22:59,625 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,626 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,627 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,628 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,629 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2026-04-21T10:22:59,630 already explicitly excluding 'multiqc.modules.kallisto' via 2026-04-21T10:22:59,630 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,632 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,633 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,635 even if it does not contain any `.py` files. 2026-04-21T10:22:59,636 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,636 directory, all directories are treated like packages. 2026-04-21T10:22:59,637 ******************************************************************************** 2026-04-21T10:22:59,638 !! 2026-04-21T10:22:59,638 check.warn(importable) 2026-04-21T10:22:59,638 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2026-04-21T10:22:59,639 !! 2026-04-21T10:22:59,640 ******************************************************************************** 2026-04-21T10:22:59,640 ############################ 2026-04-21T10:22:59,641 # Package would be ignored # 2026-04-21T10:22:59,641 ############################ 2026-04-21T10:22:59,642 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2026-04-21T10:22:59,643 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,644 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,644 package, please make sure that 'multiqc.modules.kat' is explicitly added 2026-04-21T10:22:59,644 to the `packages` configuration field. 2026-04-21T10:22:59,645 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,646 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,647 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,648 If you don't want 'multiqc.modules.kat' to be distributed and are 2026-04-21T10:22:59,649 already explicitly excluding 'multiqc.modules.kat' via 2026-04-21T10:22:59,649 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,650 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,651 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,653 even if it does not contain any `.py` files. 2026-04-21T10:22:59,653 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,654 directory, all directories are treated like packages. 2026-04-21T10:22:59,654 ******************************************************************************** 2026-04-21T10:22:59,655 !! 2026-04-21T10:22:59,656 check.warn(importable) 2026-04-21T10:22:59,656 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2026-04-21T10:22:59,657 !! 2026-04-21T10:22:59,658 ******************************************************************************** 2026-04-21T10:22:59,658 ############################ 2026-04-21T10:22:59,659 # Package would be ignored # 2026-04-21T10:22:59,659 ############################ 2026-04-21T10:22:59,660 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2026-04-21T10:22:59,660 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,661 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,662 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2026-04-21T10:22:59,662 to the `packages` configuration field. 2026-04-21T10:22:59,663 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,663 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,664 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,665 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,666 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,667 If you don't want 'multiqc.modules.kraken' to be distributed and are 2026-04-21T10:22:59,667 already explicitly excluding 'multiqc.modules.kraken' via 2026-04-21T10:22:59,668 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,668 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,669 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,670 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,671 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,672 even if it does not contain any `.py` files. 2026-04-21T10:22:59,672 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,672 directory, all directories are treated like packages. 2026-04-21T10:22:59,673 ******************************************************************************** 2026-04-21T10:22:59,673 !! 2026-04-21T10:22:59,674 check.warn(importable) 2026-04-21T10:22:59,674 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2026-04-21T10:22:59,674 !! 2026-04-21T10:22:59,675 ******************************************************************************** 2026-04-21T10:22:59,676 ############################ 2026-04-21T10:22:59,676 # Package would be ignored # 2026-04-21T10:22:59,676 ############################ 2026-04-21T10:22:59,677 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2026-04-21T10:22:59,677 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,678 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,678 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2026-04-21T10:22:59,679 to the `packages` configuration field. 2026-04-21T10:22:59,680 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,681 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,682 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,684 If you don't want 'multiqc.modules.leehom' to be distributed and are 2026-04-21T10:22:59,685 already explicitly excluding 'multiqc.modules.leehom' via 2026-04-21T10:22:59,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,686 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,687 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,690 even if it does not contain any `.py` files. 2026-04-21T10:22:59,690 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,690 directory, all directories are treated like packages. 2026-04-21T10:22:59,691 ******************************************************************************** 2026-04-21T10:22:59,692 !! 2026-04-21T10:22:59,692 check.warn(importable) 2026-04-21T10:22:59,693 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2026-04-21T10:22:59,693 !! 2026-04-21T10:22:59,694 ******************************************************************************** 2026-04-21T10:22:59,695 ############################ 2026-04-21T10:22:59,695 # Package would be ignored # 2026-04-21T10:22:59,695 ############################ 2026-04-21T10:22:59,696 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2026-04-21T10:22:59,696 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,697 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,697 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2026-04-21T10:22:59,697 to the `packages` configuration field. 2026-04-21T10:22:59,698 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,698 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,699 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,699 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,700 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,701 If you don't want 'multiqc.modules.librarian' to be distributed and are 2026-04-21T10:22:59,701 already explicitly excluding 'multiqc.modules.librarian' via 2026-04-21T10:22:59,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,702 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,703 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,704 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,705 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,706 even if it does not contain any `.py` files. 2026-04-21T10:22:59,706 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,707 directory, all directories are treated like packages. 2026-04-21T10:22:59,707 ******************************************************************************** 2026-04-21T10:22:59,708 !! 2026-04-21T10:22:59,709 check.warn(importable) 2026-04-21T10:22:59,709 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2026-04-21T10:22:59,710 !! 2026-04-21T10:22:59,711 ******************************************************************************** 2026-04-21T10:22:59,711 ############################ 2026-04-21T10:22:59,712 # Package would be ignored # 2026-04-21T10:22:59,712 ############################ 2026-04-21T10:22:59,712 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2026-04-21T10:22:59,713 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,714 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,714 package, please make sure that 'multiqc.modules.lima' is explicitly added 2026-04-21T10:22:59,715 to the `packages` configuration field. 2026-04-21T10:22:59,716 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,717 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,717 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,719 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,721 If you don't want 'multiqc.modules.lima' to be distributed and are 2026-04-21T10:22:59,721 already explicitly excluding 'multiqc.modules.lima' via 2026-04-21T10:22:59,722 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,722 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,722 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,723 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,725 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,725 even if it does not contain any `.py` files. 2026-04-21T10:22:59,726 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,726 directory, all directories are treated like packages. 2026-04-21T10:22:59,726 ******************************************************************************** 2026-04-21T10:22:59,727 !! 2026-04-21T10:22:59,727 check.warn(importable) 2026-04-21T10:22:59,728 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2026-04-21T10:22:59,728 !! 2026-04-21T10:22:59,729 ******************************************************************************** 2026-04-21T10:22:59,730 ############################ 2026-04-21T10:22:59,730 # Package would be ignored # 2026-04-21T10:22:59,731 ############################ 2026-04-21T10:22:59,731 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2026-04-21T10:22:59,732 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,733 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,734 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2026-04-21T10:22:59,734 to the `packages` configuration field. 2026-04-21T10:22:59,735 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,736 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,737 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,738 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,739 If you don't want 'multiqc.modules.longranger' to be distributed and are 2026-04-21T10:22:59,739 already explicitly excluding 'multiqc.modules.longranger' via 2026-04-21T10:22:59,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,741 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,742 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,743 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,744 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,745 even if it does not contain any `.py` files. 2026-04-21T10:22:59,745 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,746 directory, all directories are treated like packages. 2026-04-21T10:22:59,746 ******************************************************************************** 2026-04-21T10:22:59,747 !! 2026-04-21T10:22:59,748 check.warn(importable) 2026-04-21T10:22:59,748 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2026-04-21T10:22:59,748 !! 2026-04-21T10:22:59,749 ******************************************************************************** 2026-04-21T10:22:59,749 ############################ 2026-04-21T10:22:59,749 # Package would be ignored # 2026-04-21T10:22:59,750 ############################ 2026-04-21T10:22:59,750 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2026-04-21T10:22:59,750 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,751 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,751 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2026-04-21T10:22:59,752 to the `packages` configuration field. 2026-04-21T10:22:59,752 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,753 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,754 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,755 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,755 If you don't want 'multiqc.modules.macs2' to be distributed and are 2026-04-21T10:22:59,756 already explicitly excluding 'multiqc.modules.macs2' via 2026-04-21T10:22:59,756 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,757 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,758 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,759 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,761 even if it does not contain any `.py` files. 2026-04-21T10:22:59,762 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,762 directory, all directories are treated like packages. 2026-04-21T10:22:59,763 ******************************************************************************** 2026-04-21T10:22:59,764 !! 2026-04-21T10:22:59,764 check.warn(importable) 2026-04-21T10:22:59,765 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2026-04-21T10:22:59,765 !! 2026-04-21T10:22:59,766 ******************************************************************************** 2026-04-21T10:22:59,766 ############################ 2026-04-21T10:22:59,767 # Package would be ignored # 2026-04-21T10:22:59,767 ############################ 2026-04-21T10:22:59,768 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2026-04-21T10:22:59,768 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,769 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,770 package, please make sure that 'multiqc.modules.malt' is explicitly added 2026-04-21T10:22:59,770 to the `packages` configuration field. 2026-04-21T10:22:59,771 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,772 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,772 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,773 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,774 If you don't want 'multiqc.modules.malt' to be distributed and are 2026-04-21T10:22:59,774 already explicitly excluding 'multiqc.modules.malt' via 2026-04-21T10:22:59,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,775 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,776 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,777 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,778 even if it does not contain any `.py` files. 2026-04-21T10:22:59,778 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,779 directory, all directories are treated like packages. 2026-04-21T10:22:59,779 ******************************************************************************** 2026-04-21T10:22:59,780 !! 2026-04-21T10:22:59,781 check.warn(importable) 2026-04-21T10:22:59,781 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2026-04-21T10:22:59,781 !! 2026-04-21T10:22:59,782 ******************************************************************************** 2026-04-21T10:22:59,783 ############################ 2026-04-21T10:22:59,783 # Package would be ignored # 2026-04-21T10:22:59,784 ############################ 2026-04-21T10:22:59,784 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2026-04-21T10:22:59,785 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,786 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,787 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2026-04-21T10:22:59,787 to the `packages` configuration field. 2026-04-21T10:22:59,788 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,789 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,789 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,790 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,792 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2026-04-21T10:22:59,792 already explicitly excluding 'multiqc.modules.mapdamage' via 2026-04-21T10:22:59,793 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,794 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,795 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,797 even if it does not contain any `.py` files. 2026-04-21T10:22:59,797 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,798 directory, all directories are treated like packages. 2026-04-21T10:22:59,798 ******************************************************************************** 2026-04-21T10:22:59,799 !! 2026-04-21T10:22:59,799 check.warn(importable) 2026-04-21T10:22:59,800 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2026-04-21T10:22:59,800 !! 2026-04-21T10:22:59,801 ******************************************************************************** 2026-04-21T10:22:59,801 ############################ 2026-04-21T10:22:59,801 # Package would be ignored # 2026-04-21T10:22:59,802 ############################ 2026-04-21T10:22:59,802 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2026-04-21T10:22:59,802 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,803 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,803 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2026-04-21T10:22:59,804 to the `packages` configuration field. 2026-04-21T10:22:59,805 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,805 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,807 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,808 If you don't want 'multiqc.modules.megahit' to be distributed and are 2026-04-21T10:22:59,809 already explicitly excluding 'multiqc.modules.megahit' via 2026-04-21T10:22:59,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,810 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,811 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,811 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,814 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,814 even if it does not contain any `.py` files. 2026-04-21T10:22:59,814 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,815 directory, all directories are treated like packages. 2026-04-21T10:22:59,815 ******************************************************************************** 2026-04-21T10:22:59,816 !! 2026-04-21T10:22:59,817 check.warn(importable) 2026-04-21T10:22:59,817 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2026-04-21T10:22:59,817 !! 2026-04-21T10:22:59,818 ******************************************************************************** 2026-04-21T10:22:59,819 ############################ 2026-04-21T10:22:59,819 # Package would be ignored # 2026-04-21T10:22:59,819 ############################ 2026-04-21T10:22:59,820 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2026-04-21T10:22:59,821 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,821 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,822 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2026-04-21T10:22:59,822 to the `packages` configuration field. 2026-04-21T10:22:59,823 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,823 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,823 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,824 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,825 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2026-04-21T10:22:59,826 already explicitly excluding 'multiqc.modules.metaphlan' via 2026-04-21T10:22:59,826 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,826 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,827 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,827 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,830 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,830 even if it does not contain any `.py` files. 2026-04-21T10:22:59,830 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,831 directory, all directories are treated like packages. 2026-04-21T10:22:59,831 ******************************************************************************** 2026-04-21T10:22:59,832 !! 2026-04-21T10:22:59,833 check.warn(importable) 2026-04-21T10:22:59,833 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methurator' is absent from the `packages` configuration. 2026-04-21T10:22:59,834 !! 2026-04-21T10:22:59,835 ******************************************************************************** 2026-04-21T10:22:59,836 ############################ 2026-04-21T10:22:59,836 # Package would be ignored # 2026-04-21T10:22:59,837 ############################ 2026-04-21T10:22:59,837 Python recognizes 'multiqc.modules.methurator' as an importable package[^1], 2026-04-21T10:22:59,837 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,838 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,839 package, please make sure that 'multiqc.modules.methurator' is explicitly added 2026-04-21T10:22:59,839 to the `packages` configuration field. 2026-04-21T10:22:59,840 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,841 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,842 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,844 If you don't want 'multiqc.modules.methurator' to be distributed and are 2026-04-21T10:22:59,844 already explicitly excluding 'multiqc.modules.methurator' via 2026-04-21T10:22:59,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,846 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,846 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,847 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,849 even if it does not contain any `.py` files. 2026-04-21T10:22:59,849 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,849 directory, all directories are treated like packages. 2026-04-21T10:22:59,850 ******************************************************************************** 2026-04-21T10:22:59,850 !! 2026-04-21T10:22:59,851 check.warn(importable) 2026-04-21T10:22:59,851 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2026-04-21T10:22:59,852 !! 2026-04-21T10:22:59,853 ******************************************************************************** 2026-04-21T10:22:59,853 ############################ 2026-04-21T10:22:59,854 # Package would be ignored # 2026-04-21T10:22:59,854 ############################ 2026-04-21T10:22:59,855 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2026-04-21T10:22:59,855 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,856 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,857 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2026-04-21T10:22:59,858 to the `packages` configuration field. 2026-04-21T10:22:59,859 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,860 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,861 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,862 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,863 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2026-04-21T10:22:59,864 already explicitly excluding 'multiqc.modules.methylqa' via 2026-04-21T10:22:59,864 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,865 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,865 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,866 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,869 even if it does not contain any `.py` files. 2026-04-21T10:22:59,869 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,870 directory, all directories are treated like packages. 2026-04-21T10:22:59,870 ******************************************************************************** 2026-04-21T10:22:59,871 !! 2026-04-21T10:22:59,872 check.warn(importable) 2026-04-21T10:22:59,872 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mgikit' is absent from the `packages` configuration. 2026-04-21T10:22:59,873 !! 2026-04-21T10:22:59,874 ******************************************************************************** 2026-04-21T10:22:59,874 ############################ 2026-04-21T10:22:59,874 # Package would be ignored # 2026-04-21T10:22:59,875 ############################ 2026-04-21T10:22:59,875 Python recognizes 'multiqc.modules.mgikit' as an importable package[^1], 2026-04-21T10:22:59,875 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,876 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,876 package, please make sure that 'multiqc.modules.mgikit' is explicitly added 2026-04-21T10:22:59,877 to the `packages` configuration field. 2026-04-21T10:22:59,878 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,878 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,879 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,880 If you don't want 'multiqc.modules.mgikit' to be distributed and are 2026-04-21T10:22:59,881 already explicitly excluding 'multiqc.modules.mgikit' via 2026-04-21T10:22:59,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,882 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,884 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,884 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,886 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,887 even if it does not contain any `.py` files. 2026-04-21T10:22:59,887 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,888 directory, all directories are treated like packages. 2026-04-21T10:22:59,888 ******************************************************************************** 2026-04-21T10:22:59,889 !! 2026-04-21T10:22:59,890 check.warn(importable) 2026-04-21T10:22:59,890 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2026-04-21T10:22:59,890 !! 2026-04-21T10:22:59,891 ******************************************************************************** 2026-04-21T10:22:59,892 ############################ 2026-04-21T10:22:59,892 # Package would be ignored # 2026-04-21T10:22:59,893 ############################ 2026-04-21T10:22:59,893 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2026-04-21T10:22:59,894 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,895 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,895 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2026-04-21T10:22:59,896 to the `packages` configuration field. 2026-04-21T10:22:59,897 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,897 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,899 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,899 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,900 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2026-04-21T10:22:59,900 already explicitly excluding 'multiqc.modules.minionqc' via 2026-04-21T10:22:59,901 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,901 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,902 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,904 even if it does not contain any `.py` files. 2026-04-21T10:22:59,905 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,905 directory, all directories are treated like packages. 2026-04-21T10:22:59,905 ******************************************************************************** 2026-04-21T10:22:59,906 !! 2026-04-21T10:22:59,907 check.warn(importable) 2026-04-21T10:22:59,907 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2026-04-21T10:22:59,907 !! 2026-04-21T10:22:59,908 ******************************************************************************** 2026-04-21T10:22:59,909 ############################ 2026-04-21T10:22:59,909 # Package would be ignored # 2026-04-21T10:22:59,910 ############################ 2026-04-21T10:22:59,910 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2026-04-21T10:22:59,910 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,911 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,912 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2026-04-21T10:22:59,912 to the `packages` configuration field. 2026-04-21T10:22:59,913 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,914 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,915 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,916 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2026-04-21T10:22:59,917 already explicitly excluding 'multiqc.modules.mirtop' via 2026-04-21T10:22:59,917 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,918 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,918 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,919 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,920 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,922 even if it does not contain any `.py` files. 2026-04-21T10:22:59,923 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,924 directory, all directories are treated like packages. 2026-04-21T10:22:59,924 ******************************************************************************** 2026-04-21T10:22:59,925 !! 2026-04-21T10:22:59,925 check.warn(importable) 2026-04-21T10:22:59,926 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2026-04-21T10:22:59,926 !! 2026-04-21T10:22:59,927 ******************************************************************************** 2026-04-21T10:22:59,927 ############################ 2026-04-21T10:22:59,927 # Package would be ignored # 2026-04-21T10:22:59,928 ############################ 2026-04-21T10:22:59,928 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2026-04-21T10:22:59,929 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,929 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,930 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2026-04-21T10:22:59,930 to the `packages` configuration field. 2026-04-21T10:22:59,931 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,931 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,932 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,934 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2026-04-21T10:22:59,935 already explicitly excluding 'multiqc.modules.mirtrace' via 2026-04-21T10:22:59,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,936 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,937 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,940 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,940 even if it does not contain any `.py` files. 2026-04-21T10:22:59,941 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,941 directory, all directories are treated like packages. 2026-04-21T10:22:59,942 ******************************************************************************** 2026-04-21T10:22:59,943 !! 2026-04-21T10:22:59,943 check.warn(importable) 2026-04-21T10:22:59,944 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosaicatcher' is absent from the `packages` configuration. 2026-04-21T10:22:59,944 !! 2026-04-21T10:22:59,945 ******************************************************************************** 2026-04-21T10:22:59,945 ############################ 2026-04-21T10:22:59,946 # Package would be ignored # 2026-04-21T10:22:59,946 ############################ 2026-04-21T10:22:59,947 Python recognizes 'multiqc.modules.mosaicatcher' as an importable package[^1], 2026-04-21T10:22:59,947 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,948 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,949 package, please make sure that 'multiqc.modules.mosaicatcher' is explicitly added 2026-04-21T10:22:59,949 to the `packages` configuration field. 2026-04-21T10:22:59,950 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,950 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,951 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,952 If you don't want 'multiqc.modules.mosaicatcher' to be distributed and are 2026-04-21T10:22:59,953 already explicitly excluding 'multiqc.modules.mosaicatcher' via 2026-04-21T10:22:59,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,954 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,954 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,957 even if it does not contain any `.py` files. 2026-04-21T10:22:59,957 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,958 directory, all directories are treated like packages. 2026-04-21T10:22:59,958 ******************************************************************************** 2026-04-21T10:22:59,959 !! 2026-04-21T10:22:59,960 check.warn(importable) 2026-04-21T10:22:59,960 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2026-04-21T10:22:59,961 !! 2026-04-21T10:22:59,961 ******************************************************************************** 2026-04-21T10:22:59,962 ############################ 2026-04-21T10:22:59,962 # Package would be ignored # 2026-04-21T10:22:59,963 ############################ 2026-04-21T10:22:59,964 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2026-04-21T10:22:59,964 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,965 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,965 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2026-04-21T10:22:59,966 to the `packages` configuration field. 2026-04-21T10:22:59,967 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,968 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,968 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,969 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,970 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2026-04-21T10:22:59,971 already explicitly excluding 'multiqc.modules.mosdepth' via 2026-04-21T10:22:59,971 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,971 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,972 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,973 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,973 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,974 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,975 even if it does not contain any `.py` files. 2026-04-21T10:22:59,975 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,975 directory, all directories are treated like packages. 2026-04-21T10:22:59,975 ******************************************************************************** 2026-04-21T10:22:59,976 !! 2026-04-21T10:22:59,976 check.warn(importable) 2026-04-21T10:22:59,977 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mosdepth.tests' is absent from the `packages` configuration. 2026-04-21T10:22:59,977 !! 2026-04-21T10:22:59,978 ******************************************************************************** 2026-04-21T10:22:59,978 ############################ 2026-04-21T10:22:59,978 # Package would be ignored # 2026-04-21T10:22:59,979 ############################ 2026-04-21T10:22:59,979 Python recognizes 'multiqc.modules.mosdepth.tests' as an importable package[^1], 2026-04-21T10:22:59,979 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,980 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,981 package, please make sure that 'multiqc.modules.mosdepth.tests' is explicitly added 2026-04-21T10:22:59,981 to the `packages` configuration field. 2026-04-21T10:22:59,982 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:22:59,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:22:59,983 instead of `find_packages(...)`/`find:`). 2026-04-21T10:22:59,984 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:22:59,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:22:59,986 If you don't want 'multiqc.modules.mosdepth.tests' to be distributed and are 2026-04-21T10:22:59,986 already explicitly excluding 'multiqc.modules.mosdepth.tests' via 2026-04-21T10:22:59,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:22:59,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:22:59,988 combination with a more fine grained `package-data` configuration. 2026-04-21T10:22:59,988 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:22:59,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:22:59,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:22:59,991 even if it does not contain any `.py` files. 2026-04-21T10:22:59,992 On the other hand, currently there is no concept of package data 2026-04-21T10:22:59,992 directory, all directories are treated like packages. 2026-04-21T10:22:59,993 ******************************************************************************** 2026-04-21T10:22:59,994 !! 2026-04-21T10:22:59,994 check.warn(importable) 2026-04-21T10:22:59,995 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2026-04-21T10:22:59,995 !! 2026-04-21T10:22:59,996 ******************************************************************************** 2026-04-21T10:22:59,997 ############################ 2026-04-21T10:22:59,997 # Package would be ignored # 2026-04-21T10:22:59,998 ############################ 2026-04-21T10:22:59,998 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2026-04-21T10:22:59,998 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:22:59,999 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:22:59,999 package, please make sure that 'multiqc.modules.motus' is explicitly added 2026-04-21T10:22:59,999 to the `packages` configuration field. 2026-04-21T10:23:00,000 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,001 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,001 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,003 If you don't want 'multiqc.modules.motus' to be distributed and are 2026-04-21T10:23:00,003 already explicitly excluding 'multiqc.modules.motus' via 2026-04-21T10:23:00,003 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,004 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,005 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,008 even if it does not contain any `.py` files. 2026-04-21T10:23:00,008 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,009 directory, all directories are treated like packages. 2026-04-21T10:23:00,009 ******************************************************************************** 2026-04-21T10:23:00,010 !! 2026-04-21T10:23:00,010 check.warn(importable) 2026-04-21T10:23:00,011 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2026-04-21T10:23:00,011 !! 2026-04-21T10:23:00,012 ******************************************************************************** 2026-04-21T10:23:00,012 ############################ 2026-04-21T10:23:00,013 # Package would be ignored # 2026-04-21T10:23:00,013 ############################ 2026-04-21T10:23:00,014 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2026-04-21T10:23:00,014 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,015 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,015 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2026-04-21T10:23:00,016 to the `packages` configuration field. 2026-04-21T10:23:00,017 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,018 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,018 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,020 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2026-04-21T10:23:00,021 already explicitly excluding 'multiqc.modules.mtnucratio' via 2026-04-21T10:23:00,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,022 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,022 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,025 even if it does not contain any `.py` files. 2026-04-21T10:23:00,025 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,026 directory, all directories are treated like packages. 2026-04-21T10:23:00,026 ******************************************************************************** 2026-04-21T10:23:00,027 !! 2026-04-21T10:23:00,028 check.warn(importable) 2026-04-21T10:23:00,028 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2026-04-21T10:23:00,029 !! 2026-04-21T10:23:00,030 ******************************************************************************** 2026-04-21T10:23:00,030 ############################ 2026-04-21T10:23:00,031 # Package would be ignored # 2026-04-21T10:23:00,032 ############################ 2026-04-21T10:23:00,032 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2026-04-21T10:23:00,033 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,034 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,035 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2026-04-21T10:23:00,036 to the `packages` configuration field. 2026-04-21T10:23:00,037 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,038 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,039 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,041 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2026-04-21T10:23:00,042 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2026-04-21T10:23:00,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,044 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,045 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,048 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,048 even if it does not contain any `.py` files. 2026-04-21T10:23:00,049 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,050 directory, all directories are treated like packages. 2026-04-21T10:23:00,050 ******************************************************************************** 2026-04-21T10:23:00,051 !! 2026-04-21T10:23:00,052 check.warn(importable) 2026-04-21T10:23:00,052 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanoq' is absent from the `packages` configuration. 2026-04-21T10:23:00,053 !! 2026-04-21T10:23:00,054 ******************************************************************************** 2026-04-21T10:23:00,054 ############################ 2026-04-21T10:23:00,055 # Package would be ignored # 2026-04-21T10:23:00,055 ############################ 2026-04-21T10:23:00,056 Python recognizes 'multiqc.modules.nanoq' as an importable package[^1], 2026-04-21T10:23:00,056 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,057 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,058 package, please make sure that 'multiqc.modules.nanoq' is explicitly added 2026-04-21T10:23:00,058 to the `packages` configuration field. 2026-04-21T10:23:00,059 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,060 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,061 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,062 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,064 If you don't want 'multiqc.modules.nanoq' to be distributed and are 2026-04-21T10:23:00,065 already explicitly excluding 'multiqc.modules.nanoq' via 2026-04-21T10:23:00,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,067 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,069 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,073 even if it does not contain any `.py` files. 2026-04-21T10:23:00,074 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,075 directory, all directories are treated like packages. 2026-04-21T10:23:00,075 ******************************************************************************** 2026-04-21T10:23:00,077 !! 2026-04-21T10:23:00,077 check.warn(importable) 2026-04-21T10:23:00,078 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2026-04-21T10:23:00,078 !! 2026-04-21T10:23:00,080 ******************************************************************************** 2026-04-21T10:23:00,080 ############################ 2026-04-21T10:23:00,081 # Package would be ignored # 2026-04-21T10:23:00,081 ############################ 2026-04-21T10:23:00,082 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2026-04-21T10:23:00,083 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,084 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,085 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2026-04-21T10:23:00,085 to the `packages` configuration field. 2026-04-21T10:23:00,086 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,087 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,087 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,088 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,089 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,090 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2026-04-21T10:23:00,091 already explicitly excluding 'multiqc.modules.nanostat' via 2026-04-21T10:23:00,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,092 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,092 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,093 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,094 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,096 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,096 even if it does not contain any `.py` files. 2026-04-21T10:23:00,097 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,097 directory, all directories are treated like packages. 2026-04-21T10:23:00,098 ******************************************************************************** 2026-04-21T10:23:00,099 !! 2026-04-21T10:23:00,099 check.warn(importable) 2026-04-21T10:23:00,100 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2026-04-21T10:23:00,100 !! 2026-04-21T10:23:00,102 ******************************************************************************** 2026-04-21T10:23:00,102 ############################ 2026-04-21T10:23:00,103 # Package would be ignored # 2026-04-21T10:23:00,104 ############################ 2026-04-21T10:23:00,104 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2026-04-21T10:23:00,105 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,106 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,107 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2026-04-21T10:23:00,107 to the `packages` configuration field. 2026-04-21T10:23:00,108 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,109 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,110 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,111 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,112 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,113 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2026-04-21T10:23:00,114 already explicitly excluding 'multiqc.modules.nextclade' via 2026-04-21T10:23:00,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,115 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,117 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,120 even if it does not contain any `.py` files. 2026-04-21T10:23:00,121 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,122 directory, all directories are treated like packages. 2026-04-21T10:23:00,122 ******************************************************************************** 2026-04-21T10:23:00,123 !! 2026-04-21T10:23:00,124 check.warn(importable) 2026-04-21T10:23:00,124 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsbits' is absent from the `packages` configuration. 2026-04-21T10:23:00,125 !! 2026-04-21T10:23:00,126 ******************************************************************************** 2026-04-21T10:23:00,126 ############################ 2026-04-21T10:23:00,126 # Package would be ignored # 2026-04-21T10:23:00,127 ############################ 2026-04-21T10:23:00,127 Python recognizes 'multiqc.modules.ngsbits' as an importable package[^1], 2026-04-21T10:23:00,128 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,128 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,129 package, please make sure that 'multiqc.modules.ngsbits' is explicitly added 2026-04-21T10:23:00,129 to the `packages` configuration field. 2026-04-21T10:23:00,130 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,131 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,132 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,134 If you don't want 'multiqc.modules.ngsbits' to be distributed and are 2026-04-21T10:23:00,134 already explicitly excluding 'multiqc.modules.ngsbits' via 2026-04-21T10:23:00,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,136 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,137 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,140 even if it does not contain any `.py` files. 2026-04-21T10:23:00,140 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,141 directory, all directories are treated like packages. 2026-04-21T10:23:00,141 ******************************************************************************** 2026-04-21T10:23:00,142 !! 2026-04-21T10:23:00,143 check.warn(importable) 2026-04-21T10:23:00,143 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2026-04-21T10:23:00,144 !! 2026-04-21T10:23:00,145 ******************************************************************************** 2026-04-21T10:23:00,145 ############################ 2026-04-21T10:23:00,146 # Package would be ignored # 2026-04-21T10:23:00,146 ############################ 2026-04-21T10:23:00,147 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2026-04-21T10:23:00,147 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,148 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,149 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2026-04-21T10:23:00,149 to the `packages` configuration field. 2026-04-21T10:23:00,150 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,150 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,150 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,151 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,153 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2026-04-21T10:23:00,153 already explicitly excluding 'multiqc.modules.ngsderive' via 2026-04-21T10:23:00,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,155 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,156 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,159 even if it does not contain any `.py` files. 2026-04-21T10:23:00,159 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,160 directory, all directories are treated like packages. 2026-04-21T10:23:00,160 ******************************************************************************** 2026-04-21T10:23:00,161 !! 2026-04-21T10:23:00,162 check.warn(importable) 2026-04-21T10:23:00,162 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2026-04-21T10:23:00,163 !! 2026-04-21T10:23:00,164 ******************************************************************************** 2026-04-21T10:23:00,165 ############################ 2026-04-21T10:23:00,165 # Package would be ignored # 2026-04-21T10:23:00,166 ############################ 2026-04-21T10:23:00,166 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2026-04-21T10:23:00,166 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,167 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,168 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2026-04-21T10:23:00,168 to the `packages` configuration field. 2026-04-21T10:23:00,169 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,170 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,171 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,173 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2026-04-21T10:23:00,174 already explicitly excluding 'multiqc.modules.nonpareil' via 2026-04-21T10:23:00,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,175 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,175 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,176 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,178 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,178 even if it does not contain any `.py` files. 2026-04-21T10:23:00,178 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,179 directory, all directories are treated like packages. 2026-04-21T10:23:00,179 ******************************************************************************** 2026-04-21T10:23:00,180 !! 2026-04-21T10:23:00,180 check.warn(importable) 2026-04-21T10:23:00,181 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2026-04-21T10:23:00,181 !! 2026-04-21T10:23:00,182 ******************************************************************************** 2026-04-21T10:23:00,183 ############################ 2026-04-21T10:23:00,183 # Package would be ignored # 2026-04-21T10:23:00,184 ############################ 2026-04-21T10:23:00,184 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2026-04-21T10:23:00,185 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,186 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,186 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2026-04-21T10:23:00,187 to the `packages` configuration field. 2026-04-21T10:23:00,188 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,189 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,190 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,192 If you don't want 'multiqc.modules.odgi' to be distributed and are 2026-04-21T10:23:00,192 already explicitly excluding 'multiqc.modules.odgi' via 2026-04-21T10:23:00,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,194 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,195 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,198 even if it does not contain any `.py` files. 2026-04-21T10:23:00,199 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,199 directory, all directories are treated like packages. 2026-04-21T10:23:00,200 ******************************************************************************** 2026-04-21T10:23:00,201 !! 2026-04-21T10:23:00,201 check.warn(importable) 2026-04-21T10:23:00,202 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2026-04-21T10:23:00,202 !! 2026-04-21T10:23:00,203 ******************************************************************************** 2026-04-21T10:23:00,204 ############################ 2026-04-21T10:23:00,204 # Package would be ignored # 2026-04-21T10:23:00,204 ############################ 2026-04-21T10:23:00,205 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2026-04-21T10:23:00,205 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,206 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,206 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2026-04-21T10:23:00,206 to the `packages` configuration field. 2026-04-21T10:23:00,207 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,208 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,208 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,209 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,210 If you don't want 'multiqc.modules.optitype' to be distributed and are 2026-04-21T10:23:00,211 already explicitly excluding 'multiqc.modules.optitype' via 2026-04-21T10:23:00,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,212 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,213 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,216 even if it does not contain any `.py` files. 2026-04-21T10:23:00,217 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,217 directory, all directories are treated like packages. 2026-04-21T10:23:00,218 ******************************************************************************** 2026-04-21T10:23:00,219 !! 2026-04-21T10:23:00,219 check.warn(importable) 2026-04-21T10:23:00,220 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pairtools' is absent from the `packages` configuration. 2026-04-21T10:23:00,220 !! 2026-04-21T10:23:00,221 ******************************************************************************** 2026-04-21T10:23:00,222 ############################ 2026-04-21T10:23:00,222 # Package would be ignored # 2026-04-21T10:23:00,222 ############################ 2026-04-21T10:23:00,223 Python recognizes 'multiqc.modules.pairtools' as an importable package[^1], 2026-04-21T10:23:00,223 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,224 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,225 package, please make sure that 'multiqc.modules.pairtools' is explicitly added 2026-04-21T10:23:00,225 to the `packages` configuration field. 2026-04-21T10:23:00,227 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,228 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,229 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,230 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,231 If you don't want 'multiqc.modules.pairtools' to be distributed and are 2026-04-21T10:23:00,231 already explicitly excluding 'multiqc.modules.pairtools' via 2026-04-21T10:23:00,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,232 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,232 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,233 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,234 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,235 even if it does not contain any `.py` files. 2026-04-21T10:23:00,235 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,236 directory, all directories are treated like packages. 2026-04-21T10:23:00,236 ******************************************************************************** 2026-04-21T10:23:00,237 !! 2026-04-21T10:23:00,238 check.warn(importable) 2026-04-21T10:23:00,238 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2026-04-21T10:23:00,239 !! 2026-04-21T10:23:00,240 ******************************************************************************** 2026-04-21T10:23:00,240 ############################ 2026-04-21T10:23:00,240 # Package would be ignored # 2026-04-21T10:23:00,241 ############################ 2026-04-21T10:23:00,241 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2026-04-21T10:23:00,242 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,243 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,244 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2026-04-21T10:23:00,244 to the `packages` configuration field. 2026-04-21T10:23:00,246 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,247 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,248 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,249 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,249 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2026-04-21T10:23:00,250 already explicitly excluding 'multiqc.modules.pangolin' via 2026-04-21T10:23:00,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,251 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,251 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,252 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,253 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,255 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,255 even if it does not contain any `.py` files. 2026-04-21T10:23:00,256 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,257 directory, all directories are treated like packages. 2026-04-21T10:23:00,257 ******************************************************************************** 2026-04-21T10:23:00,258 !! 2026-04-21T10:23:00,258 check.warn(importable) 2026-04-21T10:23:00,258 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2026-04-21T10:23:00,259 !! 2026-04-21T10:23:00,260 ******************************************************************************** 2026-04-21T10:23:00,260 ############################ 2026-04-21T10:23:00,260 # Package would be ignored # 2026-04-21T10:23:00,261 ############################ 2026-04-21T10:23:00,261 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2026-04-21T10:23:00,261 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,262 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,262 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2026-04-21T10:23:00,263 to the `packages` configuration field. 2026-04-21T10:23:00,264 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,264 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,264 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,265 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,267 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2026-04-21T10:23:00,268 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2026-04-21T10:23:00,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,269 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,270 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,273 even if it does not contain any `.py` files. 2026-04-21T10:23:00,274 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,274 directory, all directories are treated like packages. 2026-04-21T10:23:00,274 ******************************************************************************** 2026-04-21T10:23:00,275 !! 2026-04-21T10:23:00,276 check.warn(importable) 2026-04-21T10:23:00,276 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2026-04-21T10:23:00,277 !! 2026-04-21T10:23:00,278 ******************************************************************************** 2026-04-21T10:23:00,278 ############################ 2026-04-21T10:23:00,279 # Package would be ignored # 2026-04-21T10:23:00,279 ############################ 2026-04-21T10:23:00,280 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2026-04-21T10:23:00,280 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,281 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,282 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2026-04-21T10:23:00,283 to the `packages` configuration field. 2026-04-21T10:23:00,283 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,284 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,284 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,285 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,286 If you don't want 'multiqc.modules.peddy' to be distributed and are 2026-04-21T10:23:00,287 already explicitly excluding 'multiqc.modules.peddy' via 2026-04-21T10:23:00,287 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,288 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,288 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,289 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,291 even if it does not contain any `.py` files. 2026-04-21T10:23:00,291 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,292 directory, all directories are treated like packages. 2026-04-21T10:23:00,292 ******************************************************************************** 2026-04-21T10:23:00,294 !! 2026-04-21T10:23:00,294 check.warn(importable) 2026-04-21T10:23:00,295 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.percolator' is absent from the `packages` configuration. 2026-04-21T10:23:00,295 !! 2026-04-21T10:23:00,296 ******************************************************************************** 2026-04-21T10:23:00,296 ############################ 2026-04-21T10:23:00,297 # Package would be ignored # 2026-04-21T10:23:00,297 ############################ 2026-04-21T10:23:00,298 Python recognizes 'multiqc.modules.percolator' as an importable package[^1], 2026-04-21T10:23:00,298 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,299 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,300 package, please make sure that 'multiqc.modules.percolator' is explicitly added 2026-04-21T10:23:00,300 to the `packages` configuration field. 2026-04-21T10:23:00,301 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,302 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,303 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,304 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,305 If you don't want 'multiqc.modules.percolator' to be distributed and are 2026-04-21T10:23:00,306 already explicitly excluding 'multiqc.modules.percolator' via 2026-04-21T10:23:00,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,307 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,307 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,308 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,310 even if it does not contain any `.py` files. 2026-04-21T10:23:00,311 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,311 directory, all directories are treated like packages. 2026-04-21T10:23:00,311 ******************************************************************************** 2026-04-21T10:23:00,312 !! 2026-04-21T10:23:00,312 check.warn(importable) 2026-04-21T10:23:00,313 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2026-04-21T10:23:00,313 !! 2026-04-21T10:23:00,314 ******************************************************************************** 2026-04-21T10:23:00,314 ############################ 2026-04-21T10:23:00,315 # Package would be ignored # 2026-04-21T10:23:00,315 ############################ 2026-04-21T10:23:00,316 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2026-04-21T10:23:00,316 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,317 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,317 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2026-04-21T10:23:00,318 to the `packages` configuration field. 2026-04-21T10:23:00,319 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,320 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,320 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,322 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2026-04-21T10:23:00,323 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2026-04-21T10:23:00,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,324 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,324 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,325 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,326 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,328 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,328 even if it does not contain any `.py` files. 2026-04-21T10:23:00,329 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,329 directory, all directories are treated like packages. 2026-04-21T10:23:00,330 ******************************************************************************** 2026-04-21T10:23:00,330 !! 2026-04-21T10:23:00,331 check.warn(importable) 2026-04-21T10:23:00,331 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2026-04-21T10:23:00,332 !! 2026-04-21T10:23:00,333 ******************************************************************************** 2026-04-21T10:23:00,333 ############################ 2026-04-21T10:23:00,334 # Package would be ignored # 2026-04-21T10:23:00,334 ############################ 2026-04-21T10:23:00,335 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2026-04-21T10:23:00,335 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,336 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,336 package, please make sure that 'multiqc.modules.picard' is explicitly added 2026-04-21T10:23:00,337 to the `packages` configuration field. 2026-04-21T10:23:00,337 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,338 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,339 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,340 If you don't want 'multiqc.modules.picard' to be distributed and are 2026-04-21T10:23:00,340 already explicitly excluding 'multiqc.modules.picard' via 2026-04-21T10:23:00,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,342 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,342 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,345 even if it does not contain any `.py` files. 2026-04-21T10:23:00,345 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,346 directory, all directories are treated like packages. 2026-04-21T10:23:00,347 ******************************************************************************** 2026-04-21T10:23:00,348 !! 2026-04-21T10:23:00,348 check.warn(importable) 2026-04-21T10:23:00,349 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.picard.tests' is absent from the `packages` configuration. 2026-04-21T10:23:00,349 !! 2026-04-21T10:23:00,350 ******************************************************************************** 2026-04-21T10:23:00,351 ############################ 2026-04-21T10:23:00,351 # Package would be ignored # 2026-04-21T10:23:00,352 ############################ 2026-04-21T10:23:00,352 Python recognizes 'multiqc.modules.picard.tests' as an importable package[^1], 2026-04-21T10:23:00,352 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,353 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,354 package, please make sure that 'multiqc.modules.picard.tests' is explicitly added 2026-04-21T10:23:00,354 to the `packages` configuration field. 2026-04-21T10:23:00,355 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,356 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,357 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,359 If you don't want 'multiqc.modules.picard.tests' to be distributed and are 2026-04-21T10:23:00,360 already explicitly excluding 'multiqc.modules.picard.tests' via 2026-04-21T10:23:00,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,361 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,362 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,362 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,363 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,364 even if it does not contain any `.py` files. 2026-04-21T10:23:00,364 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,364 directory, all directories are treated like packages. 2026-04-21T10:23:00,365 ******************************************************************************** 2026-04-21T10:23:00,366 !! 2026-04-21T10:23:00,366 check.warn(importable) 2026-04-21T10:23:00,366 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2026-04-21T10:23:00,367 !! 2026-04-21T10:23:00,368 ******************************************************************************** 2026-04-21T10:23:00,368 ############################ 2026-04-21T10:23:00,369 # Package would be ignored # 2026-04-21T10:23:00,369 ############################ 2026-04-21T10:23:00,370 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2026-04-21T10:23:00,370 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,371 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,372 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2026-04-21T10:23:00,372 to the `packages` configuration field. 2026-04-21T10:23:00,373 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,375 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,376 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,377 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,378 If you don't want 'multiqc.modules.porechop' to be distributed and are 2026-04-21T10:23:00,378 already explicitly excluding 'multiqc.modules.porechop' via 2026-04-21T10:23:00,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,379 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,380 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,383 even if it does not contain any `.py` files. 2026-04-21T10:23:00,384 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,384 directory, all directories are treated like packages. 2026-04-21T10:23:00,385 ******************************************************************************** 2026-04-21T10:23:00,386 !! 2026-04-21T10:23:00,386 check.warn(importable) 2026-04-21T10:23:00,386 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2026-04-21T10:23:00,387 !! 2026-04-21T10:23:00,388 ******************************************************************************** 2026-04-21T10:23:00,388 ############################ 2026-04-21T10:23:00,388 # Package would be ignored # 2026-04-21T10:23:00,389 ############################ 2026-04-21T10:23:00,389 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2026-04-21T10:23:00,389 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,390 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,390 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2026-04-21T10:23:00,391 to the `packages` configuration field. 2026-04-21T10:23:00,392 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,392 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,392 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,393 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,394 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,395 If you don't want 'multiqc.modules.preseq' to be distributed and are 2026-04-21T10:23:00,396 already explicitly excluding 'multiqc.modules.preseq' via 2026-04-21T10:23:00,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,397 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,397 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,398 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,399 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,401 even if it does not contain any `.py` files. 2026-04-21T10:23:00,402 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,402 directory, all directories are treated like packages. 2026-04-21T10:23:00,403 ******************************************************************************** 2026-04-21T10:23:00,404 !! 2026-04-21T10:23:00,404 check.warn(importable) 2026-04-21T10:23:00,405 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2026-04-21T10:23:00,405 !! 2026-04-21T10:23:00,406 ******************************************************************************** 2026-04-21T10:23:00,406 ############################ 2026-04-21T10:23:00,407 # Package would be ignored # 2026-04-21T10:23:00,407 ############################ 2026-04-21T10:23:00,408 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2026-04-21T10:23:00,408 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,409 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,410 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2026-04-21T10:23:00,410 to the `packages` configuration field. 2026-04-21T10:23:00,411 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,412 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,413 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,413 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,414 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2026-04-21T10:23:00,414 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2026-04-21T10:23:00,415 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,415 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,415 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,416 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,417 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,418 even if it does not contain any `.py` files. 2026-04-21T10:23:00,419 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,419 directory, all directories are treated like packages. 2026-04-21T10:23:00,419 ******************************************************************************** 2026-04-21T10:23:00,420 !! 2026-04-21T10:23:00,421 check.warn(importable) 2026-04-21T10:23:00,421 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2026-04-21T10:23:00,422 !! 2026-04-21T10:23:00,423 ******************************************************************************** 2026-04-21T10:23:00,424 ############################ 2026-04-21T10:23:00,424 # Package would be ignored # 2026-04-21T10:23:00,425 ############################ 2026-04-21T10:23:00,425 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2026-04-21T10:23:00,426 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,427 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,427 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2026-04-21T10:23:00,428 to the `packages` configuration field. 2026-04-21T10:23:00,429 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,430 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,431 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,433 If you don't want 'multiqc.modules.prokka' to be distributed and are 2026-04-21T10:23:00,433 already explicitly excluding 'multiqc.modules.prokka' via 2026-04-21T10:23:00,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,434 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,436 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,438 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,438 even if it does not contain any `.py` files. 2026-04-21T10:23:00,439 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,439 directory, all directories are treated like packages. 2026-04-21T10:23:00,439 ******************************************************************************** 2026-04-21T10:23:00,440 !! 2026-04-21T10:23:00,440 check.warn(importable) 2026-04-21T10:23:00,441 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2026-04-21T10:23:00,441 !! 2026-04-21T10:23:00,442 ******************************************************************************** 2026-04-21T10:23:00,442 ############################ 2026-04-21T10:23:00,443 # Package would be ignored # 2026-04-21T10:23:00,443 ############################ 2026-04-21T10:23:00,444 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2026-04-21T10:23:00,444 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,445 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,446 package, please make sure that 'multiqc.modules.purple' is explicitly added 2026-04-21T10:23:00,446 to the `packages` configuration field. 2026-04-21T10:23:00,447 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,448 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,449 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,450 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,451 If you don't want 'multiqc.modules.purple' to be distributed and are 2026-04-21T10:23:00,451 already explicitly excluding 'multiqc.modules.purple' via 2026-04-21T10:23:00,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,452 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,453 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,456 even if it does not contain any `.py` files. 2026-04-21T10:23:00,456 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,457 directory, all directories are treated like packages. 2026-04-21T10:23:00,457 ******************************************************************************** 2026-04-21T10:23:00,458 !! 2026-04-21T10:23:00,458 check.warn(importable) 2026-04-21T10:23:00,459 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2026-04-21T10:23:00,459 !! 2026-04-21T10:23:00,460 ******************************************************************************** 2026-04-21T10:23:00,461 ############################ 2026-04-21T10:23:00,461 # Package would be ignored # 2026-04-21T10:23:00,462 ############################ 2026-04-21T10:23:00,462 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2026-04-21T10:23:00,463 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,464 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,464 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2026-04-21T10:23:00,465 to the `packages` configuration field. 2026-04-21T10:23:00,465 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,466 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,467 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,468 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2026-04-21T10:23:00,468 already explicitly excluding 'multiqc.modules.pychopper' via 2026-04-21T10:23:00,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,469 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,470 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,471 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,473 even if it does not contain any `.py` files. 2026-04-21T10:23:00,474 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,474 directory, all directories are treated like packages. 2026-04-21T10:23:00,475 ******************************************************************************** 2026-04-21T10:23:00,476 !! 2026-04-21T10:23:00,476 check.warn(importable) 2026-04-21T10:23:00,477 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2026-04-21T10:23:00,477 !! 2026-04-21T10:23:00,478 ******************************************************************************** 2026-04-21T10:23:00,479 ############################ 2026-04-21T10:23:00,479 # Package would be ignored # 2026-04-21T10:23:00,480 ############################ 2026-04-21T10:23:00,480 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2026-04-21T10:23:00,481 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,481 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,482 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2026-04-21T10:23:00,482 to the `packages` configuration field. 2026-04-21T10:23:00,483 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,484 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,485 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,486 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,487 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2026-04-21T10:23:00,488 already explicitly excluding 'multiqc.modules.pycoqc' via 2026-04-21T10:23:00,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,489 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,490 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,490 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,491 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,492 even if it does not contain any `.py` files. 2026-04-21T10:23:00,493 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,493 directory, all directories are treated like packages. 2026-04-21T10:23:00,493 ******************************************************************************** 2026-04-21T10:23:00,494 !! 2026-04-21T10:23:00,495 check.warn(importable) 2026-04-21T10:23:00,495 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2026-04-21T10:23:00,495 !! 2026-04-21T10:23:00,496 ******************************************************************************** 2026-04-21T10:23:00,496 ############################ 2026-04-21T10:23:00,497 # Package would be ignored # 2026-04-21T10:23:00,497 ############################ 2026-04-21T10:23:00,498 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2026-04-21T10:23:00,498 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,499 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,499 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2026-04-21T10:23:00,500 to the `packages` configuration field. 2026-04-21T10:23:00,501 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,502 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,503 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,505 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2026-04-21T10:23:00,506 already explicitly excluding 'multiqc.modules.qc3C' via 2026-04-21T10:23:00,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,507 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,508 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,511 even if it does not contain any `.py` files. 2026-04-21T10:23:00,511 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,512 directory, all directories are treated like packages. 2026-04-21T10:23:00,512 ******************************************************************************** 2026-04-21T10:23:00,514 !! 2026-04-21T10:23:00,514 check.warn(importable) 2026-04-21T10:23:00,515 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2026-04-21T10:23:00,515 !! 2026-04-21T10:23:00,517 ******************************************************************************** 2026-04-21T10:23:00,517 ############################ 2026-04-21T10:23:00,517 # Package would be ignored # 2026-04-21T10:23:00,518 ############################ 2026-04-21T10:23:00,518 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2026-04-21T10:23:00,518 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,519 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,519 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2026-04-21T10:23:00,520 to the `packages` configuration field. 2026-04-21T10:23:00,521 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,521 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,522 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,523 If you don't want 'multiqc.modules.qorts' to be distributed and are 2026-04-21T10:23:00,524 already explicitly excluding 'multiqc.modules.qorts' via 2026-04-21T10:23:00,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,525 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,526 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,528 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,529 even if it does not contain any `.py` files. 2026-04-21T10:23:00,529 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,530 directory, all directories are treated like packages. 2026-04-21T10:23:00,530 ******************************************************************************** 2026-04-21T10:23:00,531 !! 2026-04-21T10:23:00,531 check.warn(importable) 2026-04-21T10:23:00,532 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2026-04-21T10:23:00,532 !! 2026-04-21T10:23:00,533 ******************************************************************************** 2026-04-21T10:23:00,534 ############################ 2026-04-21T10:23:00,534 # Package would be ignored # 2026-04-21T10:23:00,535 ############################ 2026-04-21T10:23:00,535 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2026-04-21T10:23:00,536 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,537 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,537 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2026-04-21T10:23:00,538 to the `packages` configuration field. 2026-04-21T10:23:00,539 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,540 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,541 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,542 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2026-04-21T10:23:00,542 already explicitly excluding 'multiqc.modules.qualimap' via 2026-04-21T10:23:00,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,544 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,544 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,546 even if it does not contain any `.py` files. 2026-04-21T10:23:00,547 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,547 directory, all directories are treated like packages. 2026-04-21T10:23:00,548 ******************************************************************************** 2026-04-21T10:23:00,548 !! 2026-04-21T10:23:00,549 check.warn(importable) 2026-04-21T10:23:00,549 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2026-04-21T10:23:00,550 !! 2026-04-21T10:23:00,550 ******************************************************************************** 2026-04-21T10:23:00,551 ############################ 2026-04-21T10:23:00,551 # Package would be ignored # 2026-04-21T10:23:00,552 ############################ 2026-04-21T10:23:00,552 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2026-04-21T10:23:00,553 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,554 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,554 package, please make sure that 'multiqc.modules.quast' is explicitly added 2026-04-21T10:23:00,555 to the `packages` configuration field. 2026-04-21T10:23:00,556 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,557 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,558 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,559 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,560 If you don't want 'multiqc.modules.quast' to be distributed and are 2026-04-21T10:23:00,561 already explicitly excluding 'multiqc.modules.quast' via 2026-04-21T10:23:00,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,562 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,563 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,566 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,566 even if it does not contain any `.py` files. 2026-04-21T10:23:00,567 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,567 directory, all directories are treated like packages. 2026-04-21T10:23:00,568 ******************************************************************************** 2026-04-21T10:23:00,569 !! 2026-04-21T10:23:00,569 check.warn(importable) 2026-04-21T10:23:00,570 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribotish' is absent from the `packages` configuration. 2026-04-21T10:23:00,570 !! 2026-04-21T10:23:00,571 ******************************************************************************** 2026-04-21T10:23:00,571 ############################ 2026-04-21T10:23:00,571 # Package would be ignored # 2026-04-21T10:23:00,572 ############################ 2026-04-21T10:23:00,572 Python recognizes 'multiqc.modules.ribotish' as an importable package[^1], 2026-04-21T10:23:00,572 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,573 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,574 package, please make sure that 'multiqc.modules.ribotish' is explicitly added 2026-04-21T10:23:00,574 to the `packages` configuration field. 2026-04-21T10:23:00,575 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,576 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,577 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,578 If you don't want 'multiqc.modules.ribotish' to be distributed and are 2026-04-21T10:23:00,579 already explicitly excluding 'multiqc.modules.ribotish' via 2026-04-21T10:23:00,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,580 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,581 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,584 even if it does not contain any `.py` files. 2026-04-21T10:23:00,585 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,586 directory, all directories are treated like packages. 2026-04-21T10:23:00,586 ******************************************************************************** 2026-04-21T10:23:00,587 !! 2026-04-21T10:23:00,588 check.warn(importable) 2026-04-21T10:23:00,588 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribotish.tests' is absent from the `packages` configuration. 2026-04-21T10:23:00,589 !! 2026-04-21T10:23:00,590 ******************************************************************************** 2026-04-21T10:23:00,590 ############################ 2026-04-21T10:23:00,591 # Package would be ignored # 2026-04-21T10:23:00,591 ############################ 2026-04-21T10:23:00,592 Python recognizes 'multiqc.modules.ribotish.tests' as an importable package[^1], 2026-04-21T10:23:00,592 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,593 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,594 package, please make sure that 'multiqc.modules.ribotish.tests' is explicitly added 2026-04-21T10:23:00,594 to the `packages` configuration field. 2026-04-21T10:23:00,595 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,595 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,596 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,596 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,598 If you don't want 'multiqc.modules.ribotish.tests' to be distributed and are 2026-04-21T10:23:00,598 already explicitly excluding 'multiqc.modules.ribotish.tests' via 2026-04-21T10:23:00,598 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,599 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,599 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,600 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,602 even if it does not contain any `.py` files. 2026-04-21T10:23:00,602 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,603 directory, all directories are treated like packages. 2026-04-21T10:23:00,603 ******************************************************************************** 2026-04-21T10:23:00,604 !! 2026-04-21T10:23:00,604 check.warn(importable) 2026-04-21T10:23:00,605 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.ribowaltz' is absent from the `packages` configuration. 2026-04-21T10:23:00,605 !! 2026-04-21T10:23:00,606 ******************************************************************************** 2026-04-21T10:23:00,606 ############################ 2026-04-21T10:23:00,607 # Package would be ignored # 2026-04-21T10:23:00,607 ############################ 2026-04-21T10:23:00,608 Python recognizes 'multiqc.modules.ribowaltz' as an importable package[^1], 2026-04-21T10:23:00,608 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,609 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,610 package, please make sure that 'multiqc.modules.ribowaltz' is explicitly added 2026-04-21T10:23:00,610 to the `packages` configuration field. 2026-04-21T10:23:00,611 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,612 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,613 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,615 If you don't want 'multiqc.modules.ribowaltz' to be distributed and are 2026-04-21T10:23:00,615 already explicitly excluding 'multiqc.modules.ribowaltz' via 2026-04-21T10:23:00,616 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,617 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,618 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,618 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,620 even if it does not contain any `.py` files. 2026-04-21T10:23:00,620 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,620 directory, all directories are treated like packages. 2026-04-21T10:23:00,621 ******************************************************************************** 2026-04-21T10:23:00,621 !! 2026-04-21T10:23:00,622 check.warn(importable) 2026-04-21T10:23:00,622 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2026-04-21T10:23:00,623 !! 2026-04-21T10:23:00,623 ******************************************************************************** 2026-04-21T10:23:00,624 ############################ 2026-04-21T10:23:00,624 # Package would be ignored # 2026-04-21T10:23:00,624 ############################ 2026-04-21T10:23:00,625 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2026-04-21T10:23:00,625 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,626 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,627 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2026-04-21T10:23:00,627 to the `packages` configuration field. 2026-04-21T10:23:00,628 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,629 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,630 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,633 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2026-04-21T10:23:00,633 already explicitly excluding 'multiqc.modules.rna_seqc' via 2026-04-21T10:23:00,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,634 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,635 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,636 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,637 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,638 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,639 even if it does not contain any `.py` files. 2026-04-21T10:23:00,639 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,640 directory, all directories are treated like packages. 2026-04-21T10:23:00,640 ******************************************************************************** 2026-04-21T10:23:00,641 !! 2026-04-21T10:23:00,642 check.warn(importable) 2026-04-21T10:23:00,642 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2026-04-21T10:23:00,643 !! 2026-04-21T10:23:00,644 ******************************************************************************** 2026-04-21T10:23:00,644 ############################ 2026-04-21T10:23:00,645 # Package would be ignored # 2026-04-21T10:23:00,645 ############################ 2026-04-21T10:23:00,645 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2026-04-21T10:23:00,646 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,646 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,647 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2026-04-21T10:23:00,647 to the `packages` configuration field. 2026-04-21T10:23:00,648 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,648 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,649 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,650 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,651 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2026-04-21T10:23:00,651 already explicitly excluding 'multiqc.modules.rockhopper' via 2026-04-21T10:23:00,651 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,652 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,652 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,653 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,654 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,657 even if it does not contain any `.py` files. 2026-04-21T10:23:00,657 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,658 directory, all directories are treated like packages. 2026-04-21T10:23:00,658 ******************************************************************************** 2026-04-21T10:23:00,659 !! 2026-04-21T10:23:00,660 check.warn(importable) 2026-04-21T10:23:00,660 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2026-04-21T10:23:00,661 !! 2026-04-21T10:23:00,662 ******************************************************************************** 2026-04-21T10:23:00,662 ############################ 2026-04-21T10:23:00,663 # Package would be ignored # 2026-04-21T10:23:00,663 ############################ 2026-04-21T10:23:00,664 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2026-04-21T10:23:00,664 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,665 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,666 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2026-04-21T10:23:00,666 to the `packages` configuration field. 2026-04-21T10:23:00,667 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,668 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,669 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,671 If you don't want 'multiqc.modules.rsem' to be distributed and are 2026-04-21T10:23:00,672 already explicitly excluding 'multiqc.modules.rsem' via 2026-04-21T10:23:00,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,673 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,673 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,675 even if it does not contain any `.py` files. 2026-04-21T10:23:00,676 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,676 directory, all directories are treated like packages. 2026-04-21T10:23:00,676 ******************************************************************************** 2026-04-21T10:23:00,677 !! 2026-04-21T10:23:00,677 check.warn(importable) 2026-04-21T10:23:00,678 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2026-04-21T10:23:00,678 !! 2026-04-21T10:23:00,679 ******************************************************************************** 2026-04-21T10:23:00,679 ############################ 2026-04-21T10:23:00,680 # Package would be ignored # 2026-04-21T10:23:00,680 ############################ 2026-04-21T10:23:00,681 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2026-04-21T10:23:00,681 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,682 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,683 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2026-04-21T10:23:00,683 to the `packages` configuration field. 2026-04-21T10:23:00,684 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,685 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,686 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,688 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2026-04-21T10:23:00,688 already explicitly excluding 'multiqc.modules.rseqc' via 2026-04-21T10:23:00,689 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,690 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,690 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,693 even if it does not contain any `.py` files. 2026-04-21T10:23:00,694 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,694 directory, all directories are treated like packages. 2026-04-21T10:23:00,695 ******************************************************************************** 2026-04-21T10:23:00,696 !! 2026-04-21T10:23:00,696 check.warn(importable) 2026-04-21T10:23:00,696 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2026-04-21T10:23:00,697 !! 2026-04-21T10:23:00,697 ******************************************************************************** 2026-04-21T10:23:00,698 ############################ 2026-04-21T10:23:00,698 # Package would be ignored # 2026-04-21T10:23:00,698 ############################ 2026-04-21T10:23:00,699 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2026-04-21T10:23:00,699 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,700 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,700 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2026-04-21T10:23:00,700 to the `packages` configuration field. 2026-04-21T10:23:00,701 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,702 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,702 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,703 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,704 If you don't want 'multiqc.modules.salmon' to be distributed and are 2026-04-21T10:23:00,705 already explicitly excluding 'multiqc.modules.salmon' via 2026-04-21T10:23:00,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,706 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,707 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,711 even if it does not contain any `.py` files. 2026-04-21T10:23:00,711 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,712 directory, all directories are treated like packages. 2026-04-21T10:23:00,712 ******************************************************************************** 2026-04-21T10:23:00,713 !! 2026-04-21T10:23:00,713 check.warn(importable) 2026-04-21T10:23:00,714 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2026-04-21T10:23:00,714 !! 2026-04-21T10:23:00,715 ******************************************************************************** 2026-04-21T10:23:00,716 ############################ 2026-04-21T10:23:00,716 # Package would be ignored # 2026-04-21T10:23:00,716 ############################ 2026-04-21T10:23:00,717 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2026-04-21T10:23:00,717 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,718 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,719 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2026-04-21T10:23:00,719 to the `packages` configuration field. 2026-04-21T10:23:00,721 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,722 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,722 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,724 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2026-04-21T10:23:00,724 already explicitly excluding 'multiqc.modules.sambamba' via 2026-04-21T10:23:00,724 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,725 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,725 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,726 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,727 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,728 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,729 even if it does not contain any `.py` files. 2026-04-21T10:23:00,729 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,730 directory, all directories are treated like packages. 2026-04-21T10:23:00,730 ******************************************************************************** 2026-04-21T10:23:00,731 !! 2026-04-21T10:23:00,731 check.warn(importable) 2026-04-21T10:23:00,732 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2026-04-21T10:23:00,732 !! 2026-04-21T10:23:00,734 ******************************************************************************** 2026-04-21T10:23:00,734 ############################ 2026-04-21T10:23:00,735 # Package would be ignored # 2026-04-21T10:23:00,735 ############################ 2026-04-21T10:23:00,736 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2026-04-21T10:23:00,736 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,737 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,738 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2026-04-21T10:23:00,738 to the `packages` configuration field. 2026-04-21T10:23:00,739 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,740 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,741 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,743 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2026-04-21T10:23:00,743 already explicitly excluding 'multiqc.modules.samblaster' via 2026-04-21T10:23:00,744 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,745 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,746 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,749 even if it does not contain any `.py` files. 2026-04-21T10:23:00,750 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,750 directory, all directories are treated like packages. 2026-04-21T10:23:00,751 ******************************************************************************** 2026-04-21T10:23:00,751 !! 2026-04-21T10:23:00,752 check.warn(importable) 2026-04-21T10:23:00,752 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2026-04-21T10:23:00,753 !! 2026-04-21T10:23:00,753 ******************************************************************************** 2026-04-21T10:23:00,754 ############################ 2026-04-21T10:23:00,754 # Package would be ignored # 2026-04-21T10:23:00,754 ############################ 2026-04-21T10:23:00,755 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2026-04-21T10:23:00,755 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,756 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,756 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2026-04-21T10:23:00,757 to the `packages` configuration field. 2026-04-21T10:23:00,757 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,758 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,759 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,762 If you don't want 'multiqc.modules.samtools' to be distributed and are 2026-04-21T10:23:00,762 already explicitly excluding 'multiqc.modules.samtools' via 2026-04-21T10:23:00,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,764 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,765 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,768 even if it does not contain any `.py` files. 2026-04-21T10:23:00,768 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,769 directory, all directories are treated like packages. 2026-04-21T10:23:00,769 ******************************************************************************** 2026-04-21T10:23:00,770 !! 2026-04-21T10:23:00,771 check.warn(importable) 2026-04-21T10:23:00,771 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.samtools.tests' is absent from the `packages` configuration. 2026-04-21T10:23:00,772 !! 2026-04-21T10:23:00,773 ******************************************************************************** 2026-04-21T10:23:00,774 ############################ 2026-04-21T10:23:00,774 # Package would be ignored # 2026-04-21T10:23:00,775 ############################ 2026-04-21T10:23:00,775 Python recognizes 'multiqc.modules.samtools.tests' as an importable package[^1], 2026-04-21T10:23:00,776 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,777 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,777 package, please make sure that 'multiqc.modules.samtools.tests' is explicitly added 2026-04-21T10:23:00,777 to the `packages` configuration field. 2026-04-21T10:23:00,778 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,779 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,779 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,781 If you don't want 'multiqc.modules.samtools.tests' to be distributed and are 2026-04-21T10:23:00,781 already explicitly excluding 'multiqc.modules.samtools.tests' via 2026-04-21T10:23:00,781 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,782 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,782 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,783 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,786 even if it does not contain any `.py` files. 2026-04-21T10:23:00,786 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,787 directory, all directories are treated like packages. 2026-04-21T10:23:00,787 ******************************************************************************** 2026-04-21T10:23:00,788 !! 2026-04-21T10:23:00,789 check.warn(importable) 2026-04-21T10:23:00,790 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2026-04-21T10:23:00,790 !! 2026-04-21T10:23:00,791 ******************************************************************************** 2026-04-21T10:23:00,791 ############################ 2026-04-21T10:23:00,792 # Package would be ignored # 2026-04-21T10:23:00,792 ############################ 2026-04-21T10:23:00,793 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2026-04-21T10:23:00,793 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,794 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,795 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2026-04-21T10:23:00,795 to the `packages` configuration field. 2026-04-21T10:23:00,796 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,797 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,797 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,798 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,799 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,800 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2026-04-21T10:23:00,801 already explicitly excluding 'multiqc.modules.sargasso' via 2026-04-21T10:23:00,801 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,802 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,803 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,803 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,804 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,805 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,805 even if it does not contain any `.py` files. 2026-04-21T10:23:00,806 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,806 directory, all directories are treated like packages. 2026-04-21T10:23:00,807 ******************************************************************************** 2026-04-21T10:23:00,807 !! 2026-04-21T10:23:00,808 check.warn(importable) 2026-04-21T10:23:00,808 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2026-04-21T10:23:00,809 !! 2026-04-21T10:23:00,809 ******************************************************************************** 2026-04-21T10:23:00,810 ############################ 2026-04-21T10:23:00,810 # Package would be ignored # 2026-04-21T10:23:00,810 ############################ 2026-04-21T10:23:00,811 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2026-04-21T10:23:00,811 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,812 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,812 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2026-04-21T10:23:00,813 to the `packages` configuration field. 2026-04-21T10:23:00,814 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,815 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,816 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,819 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2026-04-21T10:23:00,819 already explicitly excluding 'multiqc.modules.seqera_cli' via 2026-04-21T10:23:00,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,821 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,822 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,824 even if it does not contain any `.py` files. 2026-04-21T10:23:00,825 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,825 directory, all directories are treated like packages. 2026-04-21T10:23:00,826 ******************************************************************************** 2026-04-21T10:23:00,827 !! 2026-04-21T10:23:00,828 check.warn(importable) 2026-04-21T10:23:00,828 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqfu' is absent from the `packages` configuration. 2026-04-21T10:23:00,829 !! 2026-04-21T10:23:00,830 ******************************************************************************** 2026-04-21T10:23:00,830 ############################ 2026-04-21T10:23:00,830 # Package would be ignored # 2026-04-21T10:23:00,831 ############################ 2026-04-21T10:23:00,831 Python recognizes 'multiqc.modules.seqfu' as an importable package[^1], 2026-04-21T10:23:00,831 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,832 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,833 package, please make sure that 'multiqc.modules.seqfu' is explicitly added 2026-04-21T10:23:00,833 to the `packages` configuration field. 2026-04-21T10:23:00,834 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,834 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,835 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,837 If you don't want 'multiqc.modules.seqfu' to be distributed and are 2026-04-21T10:23:00,837 already explicitly excluding 'multiqc.modules.seqfu' via 2026-04-21T10:23:00,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,838 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,839 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,843 even if it does not contain any `.py` files. 2026-04-21T10:23:00,843 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,844 directory, all directories are treated like packages. 2026-04-21T10:23:00,844 ******************************************************************************** 2026-04-21T10:23:00,845 !! 2026-04-21T10:23:00,846 check.warn(importable) 2026-04-21T10:23:00,846 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqfu.test' is absent from the `packages` configuration. 2026-04-21T10:23:00,847 !! 2026-04-21T10:23:00,848 ******************************************************************************** 2026-04-21T10:23:00,848 ############################ 2026-04-21T10:23:00,849 # Package would be ignored # 2026-04-21T10:23:00,849 ############################ 2026-04-21T10:23:00,850 Python recognizes 'multiqc.modules.seqfu.test' as an importable package[^1], 2026-04-21T10:23:00,850 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,851 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,852 package, please make sure that 'multiqc.modules.seqfu.test' is explicitly added 2026-04-21T10:23:00,852 to the `packages` configuration field. 2026-04-21T10:23:00,853 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,854 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,855 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,857 If you don't want 'multiqc.modules.seqfu.test' to be distributed and are 2026-04-21T10:23:00,857 already explicitly excluding 'multiqc.modules.seqfu.test' via 2026-04-21T10:23:00,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,858 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,859 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,861 even if it does not contain any `.py` files. 2026-04-21T10:23:00,861 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,862 directory, all directories are treated like packages. 2026-04-21T10:23:00,862 ******************************************************************************** 2026-04-21T10:23:00,863 !! 2026-04-21T10:23:00,863 check.warn(importable) 2026-04-21T10:23:00,864 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqkit' is absent from the `packages` configuration. 2026-04-21T10:23:00,864 !! 2026-04-21T10:23:00,865 ******************************************************************************** 2026-04-21T10:23:00,865 ############################ 2026-04-21T10:23:00,866 # Package would be ignored # 2026-04-21T10:23:00,866 ############################ 2026-04-21T10:23:00,867 Python recognizes 'multiqc.modules.seqkit' as an importable package[^1], 2026-04-21T10:23:00,867 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,868 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,869 package, please make sure that 'multiqc.modules.seqkit' is explicitly added 2026-04-21T10:23:00,869 to the `packages` configuration field. 2026-04-21T10:23:00,870 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,871 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,873 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,874 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,875 If you don't want 'multiqc.modules.seqkit' to be distributed and are 2026-04-21T10:23:00,875 already explicitly excluding 'multiqc.modules.seqkit' via 2026-04-21T10:23:00,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,877 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,878 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,881 even if it does not contain any `.py` files. 2026-04-21T10:23:00,882 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,882 directory, all directories are treated like packages. 2026-04-21T10:23:00,883 ******************************************************************************** 2026-04-21T10:23:00,883 !! 2026-04-21T10:23:00,884 check.warn(importable) 2026-04-21T10:23:00,884 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqkit.tests' is absent from the `packages` configuration. 2026-04-21T10:23:00,884 !! 2026-04-21T10:23:00,885 ******************************************************************************** 2026-04-21T10:23:00,885 ############################ 2026-04-21T10:23:00,886 # Package would be ignored # 2026-04-21T10:23:00,886 ############################ 2026-04-21T10:23:00,886 Python recognizes 'multiqc.modules.seqkit.tests' as an importable package[^1], 2026-04-21T10:23:00,887 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,887 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,888 package, please make sure that 'multiqc.modules.seqkit.tests' is explicitly added 2026-04-21T10:23:00,888 to the `packages` configuration field. 2026-04-21T10:23:00,889 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,889 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,889 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,890 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,891 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,892 If you don't want 'multiqc.modules.seqkit.tests' to be distributed and are 2026-04-21T10:23:00,893 already explicitly excluding 'multiqc.modules.seqkit.tests' via 2026-04-21T10:23:00,893 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,894 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,895 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,898 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,898 even if it does not contain any `.py` files. 2026-04-21T10:23:00,899 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,899 directory, all directories are treated like packages. 2026-04-21T10:23:00,900 ******************************************************************************** 2026-04-21T10:23:00,901 !! 2026-04-21T10:23:00,901 check.warn(importable) 2026-04-21T10:23:00,902 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2026-04-21T10:23:00,902 !! 2026-04-21T10:23:00,903 ******************************************************************************** 2026-04-21T10:23:00,903 ############################ 2026-04-21T10:23:00,904 # Package would be ignored # 2026-04-21T10:23:00,904 ############################ 2026-04-21T10:23:00,905 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2026-04-21T10:23:00,905 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,906 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,907 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2026-04-21T10:23:00,908 to the `packages` configuration field. 2026-04-21T10:23:00,908 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,909 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,909 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,910 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,910 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,911 If you don't want 'multiqc.modules.sequali' to be distributed and are 2026-04-21T10:23:00,911 already explicitly excluding 'multiqc.modules.sequali' via 2026-04-21T10:23:00,912 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,912 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,913 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,914 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,915 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,915 even if it does not contain any `.py` files. 2026-04-21T10:23:00,916 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,916 directory, all directories are treated like packages. 2026-04-21T10:23:00,916 ******************************************************************************** 2026-04-21T10:23:00,917 !! 2026-04-21T10:23:00,918 check.warn(importable) 2026-04-21T10:23:00,918 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2026-04-21T10:23:00,919 !! 2026-04-21T10:23:00,920 ******************************************************************************** 2026-04-21T10:23:00,920 ############################ 2026-04-21T10:23:00,921 # Package would be ignored # 2026-04-21T10:23:00,921 ############################ 2026-04-21T10:23:00,922 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2026-04-21T10:23:00,922 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,923 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,924 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2026-04-21T10:23:00,924 to the `packages` configuration field. 2026-04-21T10:23:00,925 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,926 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,927 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,928 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,929 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2026-04-21T10:23:00,929 already explicitly excluding 'multiqc.modules.seqwho' via 2026-04-21T10:23:00,930 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,930 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,931 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,932 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,933 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,933 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,934 even if it does not contain any `.py` files. 2026-04-21T10:23:00,934 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,934 directory, all directories are treated like packages. 2026-04-21T10:23:00,935 ******************************************************************************** 2026-04-21T10:23:00,935 !! 2026-04-21T10:23:00,936 check.warn(importable) 2026-04-21T10:23:00,936 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2026-04-21T10:23:00,936 !! 2026-04-21T10:23:00,937 ******************************************************************************** 2026-04-21T10:23:00,937 ############################ 2026-04-21T10:23:00,938 # Package would be ignored # 2026-04-21T10:23:00,938 ############################ 2026-04-21T10:23:00,939 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2026-04-21T10:23:00,939 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,940 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,940 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2026-04-21T10:23:00,941 to the `packages` configuration field. 2026-04-21T10:23:00,942 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,943 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,943 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,944 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,945 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,946 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2026-04-21T10:23:00,947 already explicitly excluding 'multiqc.modules.seqyclean' via 2026-04-21T10:23:00,947 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,948 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,949 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,950 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,952 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,952 even if it does not contain any `.py` files. 2026-04-21T10:23:00,953 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,953 directory, all directories are treated like packages. 2026-04-21T10:23:00,953 ******************************************************************************** 2026-04-21T10:23:00,954 !! 2026-04-21T10:23:00,955 check.warn(importable) 2026-04-21T10:23:00,955 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2026-04-21T10:23:00,956 !! 2026-04-21T10:23:00,957 ******************************************************************************** 2026-04-21T10:23:00,958 ############################ 2026-04-21T10:23:00,958 # Package would be ignored # 2026-04-21T10:23:00,959 ############################ 2026-04-21T10:23:00,959 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2026-04-21T10:23:00,959 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,960 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,960 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2026-04-21T10:23:00,961 to the `packages` configuration field. 2026-04-21T10:23:00,961 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,962 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,962 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,963 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,964 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2026-04-21T10:23:00,965 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2026-04-21T10:23:00,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,965 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,966 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,967 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,970 even if it does not contain any `.py` files. 2026-04-21T10:23:00,971 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,971 directory, all directories are treated like packages. 2026-04-21T10:23:00,972 ******************************************************************************** 2026-04-21T10:23:00,973 !! 2026-04-21T10:23:00,973 check.warn(importable) 2026-04-21T10:23:00,974 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2026-04-21T10:23:00,974 !! 2026-04-21T10:23:00,976 ******************************************************************************** 2026-04-21T10:23:00,976 ############################ 2026-04-21T10:23:00,977 # Package would be ignored # 2026-04-21T10:23:00,977 ############################ 2026-04-21T10:23:00,978 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2026-04-21T10:23:00,978 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,979 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,979 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2026-04-21T10:23:00,980 to the `packages` configuration field. 2026-04-21T10:23:00,981 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,982 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:00,983 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:00,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:00,985 If you don't want 'multiqc.modules.sickle' to be distributed and are 2026-04-21T10:23:00,985 already explicitly excluding 'multiqc.modules.sickle' via 2026-04-21T10:23:00,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:00,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:00,987 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:00,987 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:00,988 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:00,989 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:00,989 even if it does not contain any `.py` files. 2026-04-21T10:23:00,989 On the other hand, currently there is no concept of package data 2026-04-21T10:23:00,990 directory, all directories are treated like packages. 2026-04-21T10:23:00,990 ******************************************************************************** 2026-04-21T10:23:00,991 !! 2026-04-21T10:23:00,991 check.warn(importable) 2026-04-21T10:23:00,991 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2026-04-21T10:23:00,992 !! 2026-04-21T10:23:00,992 ******************************************************************************** 2026-04-21T10:23:00,993 ############################ 2026-04-21T10:23:00,993 # Package would be ignored # 2026-04-21T10:23:00,994 ############################ 2026-04-21T10:23:00,994 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2026-04-21T10:23:00,995 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:00,996 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:00,997 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2026-04-21T10:23:00,997 to the `packages` configuration field. 2026-04-21T10:23:00,998 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:00,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:00,999 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,000 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,002 If you don't want 'multiqc.modules.skewer' to be distributed and are 2026-04-21T10:23:01,003 already explicitly excluding 'multiqc.modules.skewer' via 2026-04-21T10:23:01,003 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,004 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,005 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,008 even if it does not contain any `.py` files. 2026-04-21T10:23:01,008 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,009 directory, all directories are treated like packages. 2026-04-21T10:23:01,009 ******************************************************************************** 2026-04-21T10:23:01,011 !! 2026-04-21T10:23:01,011 check.warn(importable) 2026-04-21T10:23:01,012 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2026-04-21T10:23:01,012 !! 2026-04-21T10:23:01,013 ******************************************************************************** 2026-04-21T10:23:01,013 ############################ 2026-04-21T10:23:01,013 # Package would be ignored # 2026-04-21T10:23:01,014 ############################ 2026-04-21T10:23:01,014 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2026-04-21T10:23:01,015 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,015 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,016 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2026-04-21T10:23:01,016 to the `packages` configuration field. 2026-04-21T10:23:01,017 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,018 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,019 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,020 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2026-04-21T10:23:01,021 already explicitly excluding 'multiqc.modules.slamdunk' via 2026-04-21T10:23:01,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,022 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,023 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,027 even if it does not contain any `.py` files. 2026-04-21T10:23:01,027 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,028 directory, all directories are treated like packages. 2026-04-21T10:23:01,028 ******************************************************************************** 2026-04-21T10:23:01,030 !! 2026-04-21T10:23:01,030 check.warn(importable) 2026-04-21T10:23:01,030 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2026-04-21T10:23:01,031 !! 2026-04-21T10:23:01,032 ******************************************************************************** 2026-04-21T10:23:01,032 ############################ 2026-04-21T10:23:01,033 # Package would be ignored # 2026-04-21T10:23:01,033 ############################ 2026-04-21T10:23:01,034 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2026-04-21T10:23:01,034 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,035 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,036 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2026-04-21T10:23:01,036 to the `packages` configuration field. 2026-04-21T10:23:01,037 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,038 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,039 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,040 If you don't want 'multiqc.modules.snippy' to be distributed and are 2026-04-21T10:23:01,041 already explicitly excluding 'multiqc.modules.snippy' via 2026-04-21T10:23:01,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,041 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,042 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,042 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,044 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,045 even if it does not contain any `.py` files. 2026-04-21T10:23:01,045 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,045 directory, all directories are treated like packages. 2026-04-21T10:23:01,046 ******************************************************************************** 2026-04-21T10:23:01,046 !! 2026-04-21T10:23:01,047 check.warn(importable) 2026-04-21T10:23:01,047 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2026-04-21T10:23:01,048 !! 2026-04-21T10:23:01,049 ******************************************************************************** 2026-04-21T10:23:01,050 ############################ 2026-04-21T10:23:01,050 # Package would be ignored # 2026-04-21T10:23:01,051 ############################ 2026-04-21T10:23:01,051 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2026-04-21T10:23:01,052 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,053 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,053 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2026-04-21T10:23:01,054 to the `packages` configuration field. 2026-04-21T10:23:01,055 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,056 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,057 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,058 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,059 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2026-04-21T10:23:01,059 already explicitly excluding 'multiqc.modules.snpeff' via 2026-04-21T10:23:01,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,061 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,062 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,065 even if it does not contain any `.py` files. 2026-04-21T10:23:01,066 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,066 directory, all directories are treated like packages. 2026-04-21T10:23:01,066 ******************************************************************************** 2026-04-21T10:23:01,067 !! 2026-04-21T10:23:01,067 check.warn(importable) 2026-04-21T10:23:01,068 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2026-04-21T10:23:01,068 !! 2026-04-21T10:23:01,069 ******************************************************************************** 2026-04-21T10:23:01,069 ############################ 2026-04-21T10:23:01,069 # Package would be ignored # 2026-04-21T10:23:01,070 ############################ 2026-04-21T10:23:01,070 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2026-04-21T10:23:01,071 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,071 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,072 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2026-04-21T10:23:01,072 to the `packages` configuration field. 2026-04-21T10:23:01,073 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,074 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,075 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,077 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2026-04-21T10:23:01,077 already explicitly excluding 'multiqc.modules.snpsplit' via 2026-04-21T10:23:01,078 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,078 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,079 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,080 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,083 even if it does not contain any `.py` files. 2026-04-21T10:23:01,083 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,084 directory, all directories are treated like packages. 2026-04-21T10:23:01,084 ******************************************************************************** 2026-04-21T10:23:01,085 !! 2026-04-21T10:23:01,086 check.warn(importable) 2026-04-21T10:23:01,086 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2026-04-21T10:23:01,087 !! 2026-04-21T10:23:01,088 ******************************************************************************** 2026-04-21T10:23:01,088 ############################ 2026-04-21T10:23:01,089 # Package would be ignored # 2026-04-21T10:23:01,090 ############################ 2026-04-21T10:23:01,090 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2026-04-21T10:23:01,091 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,092 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,093 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2026-04-21T10:23:01,093 to the `packages` configuration field. 2026-04-21T10:23:01,094 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,094 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,095 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,096 If you don't want 'multiqc.modules.somalier' to be distributed and are 2026-04-21T10:23:01,097 already explicitly excluding 'multiqc.modules.somalier' via 2026-04-21T10:23:01,097 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,098 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,099 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,101 even if it does not contain any `.py` files. 2026-04-21T10:23:01,102 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,102 directory, all directories are treated like packages. 2026-04-21T10:23:01,103 ******************************************************************************** 2026-04-21T10:23:01,104 !! 2026-04-21T10:23:01,104 check.warn(importable) 2026-04-21T10:23:01,105 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sompy' is absent from the `packages` configuration. 2026-04-21T10:23:01,105 !! 2026-04-21T10:23:01,106 ******************************************************************************** 2026-04-21T10:23:01,107 ############################ 2026-04-21T10:23:01,107 # Package would be ignored # 2026-04-21T10:23:01,108 ############################ 2026-04-21T10:23:01,108 Python recognizes 'multiqc.modules.sompy' as an importable package[^1], 2026-04-21T10:23:01,109 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,110 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,110 package, please make sure that 'multiqc.modules.sompy' is explicitly added 2026-04-21T10:23:01,111 to the `packages` configuration field. 2026-04-21T10:23:01,112 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,113 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,114 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,116 If you don't want 'multiqc.modules.sompy' to be distributed and are 2026-04-21T10:23:01,116 already explicitly excluding 'multiqc.modules.sompy' via 2026-04-21T10:23:01,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,118 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,119 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,121 even if it does not contain any `.py` files. 2026-04-21T10:23:01,121 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,122 directory, all directories are treated like packages. 2026-04-21T10:23:01,122 ******************************************************************************** 2026-04-21T10:23:01,123 !! 2026-04-21T10:23:01,123 check.warn(importable) 2026-04-21T10:23:01,123 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2026-04-21T10:23:01,124 !! 2026-04-21T10:23:01,124 ******************************************************************************** 2026-04-21T10:23:01,125 ############################ 2026-04-21T10:23:01,125 # Package would be ignored # 2026-04-21T10:23:01,125 ############################ 2026-04-21T10:23:01,126 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2026-04-21T10:23:01,126 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,127 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,128 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2026-04-21T10:23:01,128 to the `packages` configuration field. 2026-04-21T10:23:01,129 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,130 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,131 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,134 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2026-04-21T10:23:01,134 already explicitly excluding 'multiqc.modules.sortmerna' via 2026-04-21T10:23:01,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,136 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,137 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,139 even if it does not contain any `.py` files. 2026-04-21T10:23:01,140 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,140 directory, all directories are treated like packages. 2026-04-21T10:23:01,141 ******************************************************************************** 2026-04-21T10:23:01,142 !! 2026-04-21T10:23:01,142 check.warn(importable) 2026-04-21T10:23:01,143 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2026-04-21T10:23:01,143 !! 2026-04-21T10:23:01,144 ******************************************************************************** 2026-04-21T10:23:01,145 ############################ 2026-04-21T10:23:01,145 # Package would be ignored # 2026-04-21T10:23:01,146 ############################ 2026-04-21T10:23:01,146 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2026-04-21T10:23:01,146 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,147 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,147 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2026-04-21T10:23:01,148 to the `packages` configuration field. 2026-04-21T10:23:01,148 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,149 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,150 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,150 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,151 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2026-04-21T10:23:01,152 already explicitly excluding 'multiqc.modules.sourmash' via 2026-04-21T10:23:01,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,153 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,154 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,156 even if it does not contain any `.py` files. 2026-04-21T10:23:01,157 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,158 directory, all directories are treated like packages. 2026-04-21T10:23:01,158 ******************************************************************************** 2026-04-21T10:23:01,159 !! 2026-04-21T10:23:01,160 check.warn(importable) 2026-04-21T10:23:01,160 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2026-04-21T10:23:01,161 !! 2026-04-21T10:23:01,162 ******************************************************************************** 2026-04-21T10:23:01,163 ############################ 2026-04-21T10:23:01,163 # Package would be ignored # 2026-04-21T10:23:01,164 ############################ 2026-04-21T10:23:01,164 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2026-04-21T10:23:01,164 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,165 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,166 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2026-04-21T10:23:01,166 to the `packages` configuration field. 2026-04-21T10:23:01,167 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,169 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,170 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,171 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2026-04-21T10:23:01,172 already explicitly excluding 'multiqc.modules.spaceranger' via 2026-04-21T10:23:01,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,173 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,173 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,174 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,176 even if it does not contain any `.py` files. 2026-04-21T10:23:01,176 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,176 directory, all directories are treated like packages. 2026-04-21T10:23:01,177 ******************************************************************************** 2026-04-21T10:23:01,177 !! 2026-04-21T10:23:01,178 check.warn(importable) 2026-04-21T10:23:01,178 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2026-04-21T10:23:01,179 !! 2026-04-21T10:23:01,180 ******************************************************************************** 2026-04-21T10:23:01,180 ############################ 2026-04-21T10:23:01,181 # Package would be ignored # 2026-04-21T10:23:01,181 ############################ 2026-04-21T10:23:01,182 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2026-04-21T10:23:01,182 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,183 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,184 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2026-04-21T10:23:01,184 to the `packages` configuration field. 2026-04-21T10:23:01,185 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,186 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,187 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,188 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,189 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,190 If you don't want 'multiqc.modules.stacks' to be distributed and are 2026-04-21T10:23:01,190 already explicitly excluding 'multiqc.modules.stacks' via 2026-04-21T10:23:01,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,191 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,192 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,196 even if it does not contain any `.py` files. 2026-04-21T10:23:01,196 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,197 directory, all directories are treated like packages. 2026-04-21T10:23:01,197 ******************************************************************************** 2026-04-21T10:23:01,198 !! 2026-04-21T10:23:01,199 check.warn(importable) 2026-04-21T10:23:01,199 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2026-04-21T10:23:01,200 !! 2026-04-21T10:23:01,200 ******************************************************************************** 2026-04-21T10:23:01,200 ############################ 2026-04-21T10:23:01,201 # Package would be ignored # 2026-04-21T10:23:01,201 ############################ 2026-04-21T10:23:01,202 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2026-04-21T10:23:01,202 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,203 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,203 package, please make sure that 'multiqc.modules.star' is explicitly added 2026-04-21T10:23:01,203 to the `packages` configuration field. 2026-04-21T10:23:01,204 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,205 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,206 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,208 If you don't want 'multiqc.modules.star' to be distributed and are 2026-04-21T10:23:01,208 already explicitly excluding 'multiqc.modules.star' via 2026-04-21T10:23:01,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,209 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,210 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,211 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,214 even if it does not contain any `.py` files. 2026-04-21T10:23:01,214 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,214 directory, all directories are treated like packages. 2026-04-21T10:23:01,215 ******************************************************************************** 2026-04-21T10:23:01,216 !! 2026-04-21T10:23:01,216 check.warn(importable) 2026-04-21T10:23:01,217 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2026-04-21T10:23:01,217 !! 2026-04-21T10:23:01,218 ******************************************************************************** 2026-04-21T10:23:01,219 ############################ 2026-04-21T10:23:01,219 # Package would be ignored # 2026-04-21T10:23:01,220 ############################ 2026-04-21T10:23:01,220 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2026-04-21T10:23:01,221 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,222 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,222 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2026-04-21T10:23:01,223 to the `packages` configuration field. 2026-04-21T10:23:01,224 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,224 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,224 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,225 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,226 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,227 If you don't want 'multiqc.modules.supernova' to be distributed and are 2026-04-21T10:23:01,227 already explicitly excluding 'multiqc.modules.supernova' via 2026-04-21T10:23:01,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,228 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,228 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,229 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,229 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,231 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,231 even if it does not contain any `.py` files. 2026-04-21T10:23:01,231 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,232 directory, all directories are treated like packages. 2026-04-21T10:23:01,232 ******************************************************************************** 2026-04-21T10:23:01,234 !! 2026-04-21T10:23:01,234 check.warn(importable) 2026-04-21T10:23:01,235 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.sylphtax' is absent from the `packages` configuration. 2026-04-21T10:23:01,235 !! 2026-04-21T10:23:01,236 ******************************************************************************** 2026-04-21T10:23:01,237 ############################ 2026-04-21T10:23:01,237 # Package would be ignored # 2026-04-21T10:23:01,238 ############################ 2026-04-21T10:23:01,239 Python recognizes 'multiqc.modules.sylphtax' as an importable package[^1], 2026-04-21T10:23:01,239 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,240 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,241 package, please make sure that 'multiqc.modules.sylphtax' is explicitly added 2026-04-21T10:23:01,241 to the `packages` configuration field. 2026-04-21T10:23:01,242 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,243 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,243 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,244 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,246 If you don't want 'multiqc.modules.sylphtax' to be distributed and are 2026-04-21T10:23:01,246 already explicitly excluding 'multiqc.modules.sylphtax' via 2026-04-21T10:23:01,247 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,248 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,249 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,250 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,251 even if it does not contain any `.py` files. 2026-04-21T10:23:01,252 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,252 directory, all directories are treated like packages. 2026-04-21T10:23:01,252 ******************************************************************************** 2026-04-21T10:23:01,253 !! 2026-04-21T10:23:01,253 check.warn(importable) 2026-04-21T10:23:01,254 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.telseq' is absent from the `packages` configuration. 2026-04-21T10:23:01,254 !! 2026-04-21T10:23:01,255 ******************************************************************************** 2026-04-21T10:23:01,255 ############################ 2026-04-21T10:23:01,255 # Package would be ignored # 2026-04-21T10:23:01,256 ############################ 2026-04-21T10:23:01,256 Python recognizes 'multiqc.modules.telseq' as an importable package[^1], 2026-04-21T10:23:01,257 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,257 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,258 package, please make sure that 'multiqc.modules.telseq' is explicitly added 2026-04-21T10:23:01,258 to the `packages` configuration field. 2026-04-21T10:23:01,259 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,259 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,260 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,260 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,262 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,263 If you don't want 'multiqc.modules.telseq' to be distributed and are 2026-04-21T10:23:01,263 already explicitly excluding 'multiqc.modules.telseq' via 2026-04-21T10:23:01,264 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,264 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,265 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,265 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,268 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,268 even if it does not contain any `.py` files. 2026-04-21T10:23:01,269 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,269 directory, all directories are treated like packages. 2026-04-21T10:23:01,270 ******************************************************************************** 2026-04-21T10:23:01,270 !! 2026-04-21T10:23:01,271 check.warn(importable) 2026-04-21T10:23:01,271 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2026-04-21T10:23:01,272 !! 2026-04-21T10:23:01,273 ******************************************************************************** 2026-04-21T10:23:01,273 ############################ 2026-04-21T10:23:01,274 # Package would be ignored # 2026-04-21T10:23:01,275 ############################ 2026-04-21T10:23:01,275 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2026-04-21T10:23:01,276 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,277 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,277 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2026-04-21T10:23:01,277 to the `packages` configuration field. 2026-04-21T10:23:01,278 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,279 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,279 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,281 If you don't want 'multiqc.modules.theta2' to be distributed and are 2026-04-21T10:23:01,281 already explicitly excluding 'multiqc.modules.theta2' via 2026-04-21T10:23:01,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,282 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,283 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,286 even if it does not contain any `.py` files. 2026-04-21T10:23:01,286 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,286 directory, all directories are treated like packages. 2026-04-21T10:23:01,287 ******************************************************************************** 2026-04-21T10:23:01,288 !! 2026-04-21T10:23:01,288 check.warn(importable) 2026-04-21T10:23:01,289 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2026-04-21T10:23:01,289 !! 2026-04-21T10:23:01,291 ******************************************************************************** 2026-04-21T10:23:01,291 ############################ 2026-04-21T10:23:01,292 # Package would be ignored # 2026-04-21T10:23:01,292 ############################ 2026-04-21T10:23:01,293 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2026-04-21T10:23:01,293 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,294 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,294 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2026-04-21T10:23:01,295 to the `packages` configuration field. 2026-04-21T10:23:01,296 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,297 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,298 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,300 If you don't want 'multiqc.modules.tophat' to be distributed and are 2026-04-21T10:23:01,300 already explicitly excluding 'multiqc.modules.tophat' via 2026-04-21T10:23:01,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,302 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,302 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,304 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,305 even if it does not contain any `.py` files. 2026-04-21T10:23:01,305 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,306 directory, all directories are treated like packages. 2026-04-21T10:23:01,306 ******************************************************************************** 2026-04-21T10:23:01,307 !! 2026-04-21T10:23:01,307 check.warn(importable) 2026-04-21T10:23:01,308 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2026-04-21T10:23:01,308 !! 2026-04-21T10:23:01,309 ******************************************************************************** 2026-04-21T10:23:01,309 ############################ 2026-04-21T10:23:01,310 # Package would be ignored # 2026-04-21T10:23:01,310 ############################ 2026-04-21T10:23:01,311 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2026-04-21T10:23:01,311 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,312 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,313 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2026-04-21T10:23:01,313 to the `packages` configuration field. 2026-04-21T10:23:01,314 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,315 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,316 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,318 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2026-04-21T10:23:01,319 already explicitly excluding 'multiqc.modules.trimmomatic' via 2026-04-21T10:23:01,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,320 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,321 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,324 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,324 even if it does not contain any `.py` files. 2026-04-21T10:23:01,325 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,325 directory, all directories are treated like packages. 2026-04-21T10:23:01,326 ******************************************************************************** 2026-04-21T10:23:01,327 !! 2026-04-21T10:23:01,327 check.warn(importable) 2026-04-21T10:23:01,328 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2026-04-21T10:23:01,328 !! 2026-04-21T10:23:01,330 ******************************************************************************** 2026-04-21T10:23:01,330 ############################ 2026-04-21T10:23:01,330 # Package would be ignored # 2026-04-21T10:23:01,331 ############################ 2026-04-21T10:23:01,331 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2026-04-21T10:23:01,331 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,332 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,332 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2026-04-21T10:23:01,333 to the `packages` configuration field. 2026-04-21T10:23:01,333 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,334 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,334 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,335 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,336 If you don't want 'multiqc.modules.truvari' to be distributed and are 2026-04-21T10:23:01,337 already explicitly excluding 'multiqc.modules.truvari' via 2026-04-21T10:23:01,337 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,338 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,339 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,341 even if it does not contain any `.py` files. 2026-04-21T10:23:01,342 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,342 directory, all directories are treated like packages. 2026-04-21T10:23:01,343 ******************************************************************************** 2026-04-21T10:23:01,344 !! 2026-04-21T10:23:01,345 check.warn(importable) 2026-04-21T10:23:01,345 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umicollapse' is absent from the `packages` configuration. 2026-04-21T10:23:01,346 !! 2026-04-21T10:23:01,347 ******************************************************************************** 2026-04-21T10:23:01,347 ############################ 2026-04-21T10:23:01,347 # Package would be ignored # 2026-04-21T10:23:01,348 ############################ 2026-04-21T10:23:01,348 Python recognizes 'multiqc.modules.umicollapse' as an importable package[^1], 2026-04-21T10:23:01,349 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,350 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,350 package, please make sure that 'multiqc.modules.umicollapse' is explicitly added 2026-04-21T10:23:01,351 to the `packages` configuration field. 2026-04-21T10:23:01,352 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,352 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,353 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,354 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,355 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,355 If you don't want 'multiqc.modules.umicollapse' to be distributed and are 2026-04-21T10:23:01,356 already explicitly excluding 'multiqc.modules.umicollapse' via 2026-04-21T10:23:01,356 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,357 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,357 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,359 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,359 even if it does not contain any `.py` files. 2026-04-21T10:23:01,360 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,360 directory, all directories are treated like packages. 2026-04-21T10:23:01,360 ******************************************************************************** 2026-04-21T10:23:01,361 !! 2026-04-21T10:23:01,362 check.warn(importable) 2026-04-21T10:23:01,362 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umicollapse.tests' is absent from the `packages` configuration. 2026-04-21T10:23:01,362 !! 2026-04-21T10:23:01,363 ******************************************************************************** 2026-04-21T10:23:01,364 ############################ 2026-04-21T10:23:01,364 # Package would be ignored # 2026-04-21T10:23:01,365 ############################ 2026-04-21T10:23:01,365 Python recognizes 'multiqc.modules.umicollapse.tests' as an importable package[^1], 2026-04-21T10:23:01,366 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,367 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,368 package, please make sure that 'multiqc.modules.umicollapse.tests' is explicitly added 2026-04-21T10:23:01,368 to the `packages` configuration field. 2026-04-21T10:23:01,369 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,370 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,370 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,371 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,372 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,373 If you don't want 'multiqc.modules.umicollapse.tests' to be distributed and are 2026-04-21T10:23:01,373 already explicitly excluding 'multiqc.modules.umicollapse.tests' via 2026-04-21T10:23:01,374 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,374 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,375 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,376 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,379 even if it does not contain any `.py` files. 2026-04-21T10:23:01,380 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,380 directory, all directories are treated like packages. 2026-04-21T10:23:01,381 ******************************************************************************** 2026-04-21T10:23:01,381 !! 2026-04-21T10:23:01,382 check.warn(importable) 2026-04-21T10:23:01,382 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2026-04-21T10:23:01,382 !! 2026-04-21T10:23:01,383 ******************************************************************************** 2026-04-21T10:23:01,383 ############################ 2026-04-21T10:23:01,384 # Package would be ignored # 2026-04-21T10:23:01,384 ############################ 2026-04-21T10:23:01,385 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2026-04-21T10:23:01,385 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,386 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,386 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2026-04-21T10:23:01,386 to the `packages` configuration field. 2026-04-21T10:23:01,387 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,387 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,388 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,389 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,389 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,390 If you don't want 'multiqc.modules.umitools' to be distributed and are 2026-04-21T10:23:01,391 already explicitly excluding 'multiqc.modules.umitools' via 2026-04-21T10:23:01,391 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,391 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,392 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,393 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,395 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,396 even if it does not contain any `.py` files. 2026-04-21T10:23:01,396 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,396 directory, all directories are treated like packages. 2026-04-21T10:23:01,397 ******************************************************************************** 2026-04-21T10:23:01,398 !! 2026-04-21T10:23:01,398 check.warn(importable) 2026-04-21T10:23:01,399 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.umitools.tests' is absent from the `packages` configuration. 2026-04-21T10:23:01,399 !! 2026-04-21T10:23:01,400 ******************************************************************************** 2026-04-21T10:23:01,401 ############################ 2026-04-21T10:23:01,401 # Package would be ignored # 2026-04-21T10:23:01,402 ############################ 2026-04-21T10:23:01,402 Python recognizes 'multiqc.modules.umitools.tests' as an importable package[^1], 2026-04-21T10:23:01,403 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,404 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,404 package, please make sure that 'multiqc.modules.umitools.tests' is explicitly added 2026-04-21T10:23:01,405 to the `packages` configuration field. 2026-04-21T10:23:01,405 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,406 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,407 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,408 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,408 If you don't want 'multiqc.modules.umitools.tests' to be distributed and are 2026-04-21T10:23:01,409 already explicitly excluding 'multiqc.modules.umitools.tests' via 2026-04-21T10:23:01,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,409 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,410 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,411 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,413 even if it does not contain any `.py` files. 2026-04-21T10:23:01,413 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,414 directory, all directories are treated like packages. 2026-04-21T10:23:01,414 ******************************************************************************** 2026-04-21T10:23:01,415 !! 2026-04-21T10:23:01,416 check.warn(importable) 2026-04-21T10:23:01,416 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2026-04-21T10:23:01,417 !! 2026-04-21T10:23:01,418 ******************************************************************************** 2026-04-21T10:23:01,418 ############################ 2026-04-21T10:23:01,418 # Package would be ignored # 2026-04-21T10:23:01,419 ############################ 2026-04-21T10:23:01,420 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2026-04-21T10:23:01,420 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,421 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,421 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2026-04-21T10:23:01,422 to the `packages` configuration field. 2026-04-21T10:23:01,423 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,424 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,425 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,427 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2026-04-21T10:23:01,427 already explicitly excluding 'multiqc.modules.varscan2' via 2026-04-21T10:23:01,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,429 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,430 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,432 even if it does not contain any `.py` files. 2026-04-21T10:23:01,432 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,432 directory, all directories are treated like packages. 2026-04-21T10:23:01,433 ******************************************************************************** 2026-04-21T10:23:01,434 !! 2026-04-21T10:23:01,434 check.warn(importable) 2026-04-21T10:23:01,434 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2026-04-21T10:23:01,435 !! 2026-04-21T10:23:01,435 ******************************************************************************** 2026-04-21T10:23:01,436 ############################ 2026-04-21T10:23:01,436 # Package would be ignored # 2026-04-21T10:23:01,437 ############################ 2026-04-21T10:23:01,437 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2026-04-21T10:23:01,437 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,438 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,439 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2026-04-21T10:23:01,439 to the `packages` configuration field. 2026-04-21T10:23:01,440 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,441 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,442 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,444 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2026-04-21T10:23:01,445 already explicitly excluding 'multiqc.modules.vcftools' via 2026-04-21T10:23:01,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,447 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,448 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,449 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,451 even if it does not contain any `.py` files. 2026-04-21T10:23:01,451 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,452 directory, all directories are treated like packages. 2026-04-21T10:23:01,452 ******************************************************************************** 2026-04-21T10:23:01,453 !! 2026-04-21T10:23:01,454 check.warn(importable) 2026-04-21T10:23:01,454 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2026-04-21T10:23:01,455 !! 2026-04-21T10:23:01,456 ******************************************************************************** 2026-04-21T10:23:01,457 ############################ 2026-04-21T10:23:01,457 # Package would be ignored # 2026-04-21T10:23:01,457 ############################ 2026-04-21T10:23:01,458 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2026-04-21T10:23:01,458 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,459 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,459 package, please make sure that 'multiqc.modules.vep' is explicitly added 2026-04-21T10:23:01,459 to the `packages` configuration field. 2026-04-21T10:23:01,460 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,461 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,462 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,463 If you don't want 'multiqc.modules.vep' to be distributed and are 2026-04-21T10:23:01,463 already explicitly excluding 'multiqc.modules.vep' via 2026-04-21T10:23:01,464 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,465 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,466 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,468 even if it does not contain any `.py` files. 2026-04-21T10:23:01,469 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,469 directory, all directories are treated like packages. 2026-04-21T10:23:01,470 ******************************************************************************** 2026-04-21T10:23:01,471 !! 2026-04-21T10:23:01,471 check.warn(importable) 2026-04-21T10:23:01,472 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2026-04-21T10:23:01,472 !! 2026-04-21T10:23:01,473 ******************************************************************************** 2026-04-21T10:23:01,474 ############################ 2026-04-21T10:23:01,474 # Package would be ignored # 2026-04-21T10:23:01,475 ############################ 2026-04-21T10:23:01,475 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2026-04-21T10:23:01,475 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,476 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,477 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2026-04-21T10:23:01,477 to the `packages` configuration field. 2026-04-21T10:23:01,478 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,480 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,481 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,483 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2026-04-21T10:23:01,484 already explicitly excluding 'multiqc.modules.verifybamid' via 2026-04-21T10:23:01,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,485 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,485 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,488 even if it does not contain any `.py` files. 2026-04-21T10:23:01,488 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,488 directory, all directories are treated like packages. 2026-04-21T10:23:01,489 ******************************************************************************** 2026-04-21T10:23:01,490 !! 2026-04-21T10:23:01,490 check.warn(importable) 2026-04-21T10:23:01,491 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.vg' is absent from the `packages` configuration. 2026-04-21T10:23:01,491 !! 2026-04-21T10:23:01,492 ******************************************************************************** 2026-04-21T10:23:01,492 ############################ 2026-04-21T10:23:01,493 # Package would be ignored # 2026-04-21T10:23:01,493 ############################ 2026-04-21T10:23:01,494 Python recognizes 'multiqc.modules.vg' as an importable package[^1], 2026-04-21T10:23:01,494 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,495 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,496 package, please make sure that 'multiqc.modules.vg' is explicitly added 2026-04-21T10:23:01,496 to the `packages` configuration field. 2026-04-21T10:23:01,497 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,498 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,500 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,501 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,502 If you don't want 'multiqc.modules.vg' to be distributed and are 2026-04-21T10:23:01,502 already explicitly excluding 'multiqc.modules.vg' via 2026-04-21T10:23:01,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,503 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,504 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,504 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,505 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,507 even if it does not contain any `.py` files. 2026-04-21T10:23:01,508 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,509 directory, all directories are treated like packages. 2026-04-21T10:23:01,509 ******************************************************************************** 2026-04-21T10:23:01,510 !! 2026-04-21T10:23:01,511 check.warn(importable) 2026-04-21T10:23:01,511 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2026-04-21T10:23:01,511 !! 2026-04-21T10:23:01,512 ******************************************************************************** 2026-04-21T10:23:01,512 ############################ 2026-04-21T10:23:01,513 # Package would be ignored # 2026-04-21T10:23:01,513 ############################ 2026-04-21T10:23:01,513 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2026-04-21T10:23:01,514 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,515 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,515 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2026-04-21T10:23:01,515 to the `packages` configuration field. 2026-04-21T10:23:01,516 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,516 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,517 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,518 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,520 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2026-04-21T10:23:01,520 already explicitly excluding 'multiqc.modules.whatshap' via 2026-04-21T10:23:01,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,522 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,523 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,526 even if it does not contain any `.py` files. 2026-04-21T10:23:01,527 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,527 directory, all directories are treated like packages. 2026-04-21T10:23:01,528 ******************************************************************************** 2026-04-21T10:23:01,529 !! 2026-04-21T10:23:01,529 check.warn(importable) 2026-04-21T10:23:01,530 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2026-04-21T10:23:01,530 !! 2026-04-21T10:23:01,531 ******************************************************************************** 2026-04-21T10:23:01,531 ############################ 2026-04-21T10:23:01,532 # Package would be ignored # 2026-04-21T10:23:01,532 ############################ 2026-04-21T10:23:01,533 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2026-04-21T10:23:01,533 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,534 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,535 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2026-04-21T10:23:01,535 to the `packages` configuration field. 2026-04-21T10:23:01,536 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,537 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,537 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,539 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2026-04-21T10:23:01,539 already explicitly excluding 'multiqc.modules.xengsort' via 2026-04-21T10:23:01,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,540 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,541 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,544 even if it does not contain any `.py` files. 2026-04-21T10:23:01,544 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,544 directory, all directories are treated like packages. 2026-04-21T10:23:01,545 ******************************************************************************** 2026-04-21T10:23:01,546 !! 2026-04-21T10:23:01,546 check.warn(importable) 2026-04-21T10:23:01,546 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenium' is absent from the `packages` configuration. 2026-04-21T10:23:01,547 !! 2026-04-21T10:23:01,548 ******************************************************************************** 2026-04-21T10:23:01,548 ############################ 2026-04-21T10:23:01,549 # Package would be ignored # 2026-04-21T10:23:01,549 ############################ 2026-04-21T10:23:01,549 Python recognizes 'multiqc.modules.xenium' as an importable package[^1], 2026-04-21T10:23:01,550 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,551 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,551 package, please make sure that 'multiqc.modules.xenium' is explicitly added 2026-04-21T10:23:01,552 to the `packages` configuration field. 2026-04-21T10:23:01,553 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,554 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,554 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,556 If you don't want 'multiqc.modules.xenium' to be distributed and are 2026-04-21T10:23:01,557 already explicitly excluding 'multiqc.modules.xenium' via 2026-04-21T10:23:01,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,558 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,558 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,559 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,560 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,562 even if it does not contain any `.py` files. 2026-04-21T10:23:01,562 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,562 directory, all directories are treated like packages. 2026-04-21T10:23:01,563 ******************************************************************************** 2026-04-21T10:23:01,564 !! 2026-04-21T10:23:01,564 check.warn(importable) 2026-04-21T10:23:01,564 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2026-04-21T10:23:01,565 !! 2026-04-21T10:23:01,565 ******************************************************************************** 2026-04-21T10:23:01,566 ############################ 2026-04-21T10:23:01,566 # Package would be ignored # 2026-04-21T10:23:01,567 ############################ 2026-04-21T10:23:01,567 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2026-04-21T10:23:01,567 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,568 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,569 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2026-04-21T10:23:01,569 to the `packages` configuration field. 2026-04-21T10:23:01,570 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,571 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,572 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,574 If you don't want 'multiqc.modules.xenome' to be distributed and are 2026-04-21T10:23:01,574 already explicitly excluding 'multiqc.modules.xenome' via 2026-04-21T10:23:01,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,575 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,576 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,576 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,579 even if it does not contain any `.py` files. 2026-04-21T10:23:01,580 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,580 directory, all directories are treated like packages. 2026-04-21T10:23:01,581 ******************************************************************************** 2026-04-21T10:23:01,582 !! 2026-04-21T10:23:01,582 check.warn(importable) 2026-04-21T10:23:01,583 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2026-04-21T10:23:01,583 !! 2026-04-21T10:23:01,584 ******************************************************************************** 2026-04-21T10:23:01,585 ############################ 2026-04-21T10:23:01,585 # Package would be ignored # 2026-04-21T10:23:01,586 ############################ 2026-04-21T10:23:01,586 Python recognizes 'multiqc.plots' as an importable package[^1], 2026-04-21T10:23:01,587 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,588 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,588 package, please make sure that 'multiqc.plots' is explicitly added 2026-04-21T10:23:01,589 to the `packages` configuration field. 2026-04-21T10:23:01,590 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,590 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,591 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,592 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,593 If you don't want 'multiqc.plots' to be distributed and are 2026-04-21T10:23:01,593 already explicitly excluding 'multiqc.plots' via 2026-04-21T10:23:01,594 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,594 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,594 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,595 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,596 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,598 even if it does not contain any `.py` files. 2026-04-21T10:23:01,598 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,598 directory, all directories are treated like packages. 2026-04-21T10:23:01,599 ******************************************************************************** 2026-04-21T10:23:01,600 !! 2026-04-21T10:23:01,600 check.warn(importable) 2026-04-21T10:23:01,601 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2026-04-21T10:23:01,601 !! 2026-04-21T10:23:01,602 ******************************************************************************** 2026-04-21T10:23:01,603 ############################ 2026-04-21T10:23:01,603 # Package would be ignored # 2026-04-21T10:23:01,604 ############################ 2026-04-21T10:23:01,604 Python recognizes 'multiqc.templates' as an importable package[^1], 2026-04-21T10:23:01,605 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,606 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,606 package, please make sure that 'multiqc.templates' is explicitly added 2026-04-21T10:23:01,606 to the `packages` configuration field. 2026-04-21T10:23:01,607 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,608 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,609 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,611 If you don't want 'multiqc.templates' to be distributed and are 2026-04-21T10:23:01,612 already explicitly excluding 'multiqc.templates' via 2026-04-21T10:23:01,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,613 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,614 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,616 even if it does not contain any `.py` files. 2026-04-21T10:23:01,616 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,617 directory, all directories are treated like packages. 2026-04-21T10:23:01,617 ******************************************************************************** 2026-04-21T10:23:01,618 !! 2026-04-21T10:23:01,618 check.warn(importable) 2026-04-21T10:23:01,618 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2026-04-21T10:23:01,619 !! 2026-04-21T10:23:01,619 ******************************************************************************** 2026-04-21T10:23:01,620 ############################ 2026-04-21T10:23:01,620 # Package would be ignored # 2026-04-21T10:23:01,621 ############################ 2026-04-21T10:23:01,621 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2026-04-21T10:23:01,621 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,622 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,623 package, please make sure that 'multiqc.templates.default' is explicitly added 2026-04-21T10:23:01,623 to the `packages` configuration field. 2026-04-21T10:23:01,624 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,625 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,625 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,626 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,628 If you don't want 'multiqc.templates.default' to be distributed and are 2026-04-21T10:23:01,628 already explicitly excluding 'multiqc.templates.default' via 2026-04-21T10:23:01,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,630 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,630 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,631 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,634 even if it does not contain any `.py` files. 2026-04-21T10:23:01,634 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,635 directory, all directories are treated like packages. 2026-04-21T10:23:01,635 ******************************************************************************** 2026-04-21T10:23:01,636 !! 2026-04-21T10:23:01,637 check.warn(importable) 2026-04-21T10:23:01,637 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2026-04-21T10:23:01,638 !! 2026-04-21T10:23:01,639 ******************************************************************************** 2026-04-21T10:23:01,639 ############################ 2026-04-21T10:23:01,639 # Package would be ignored # 2026-04-21T10:23:01,640 ############################ 2026-04-21T10:23:01,640 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2026-04-21T10:23:01,640 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,641 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,641 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2026-04-21T10:23:01,642 to the `packages` configuration field. 2026-04-21T10:23:01,642 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,643 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,644 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,645 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2026-04-21T10:23:01,646 already explicitly excluding 'multiqc.templates.default.assets.img' via 2026-04-21T10:23:01,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,646 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,647 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,648 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,650 even if it does not contain any `.py` files. 2026-04-21T10:23:01,651 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,651 directory, all directories are treated like packages. 2026-04-21T10:23:01,652 ******************************************************************************** 2026-04-21T10:23:01,653 !! 2026-04-21T10:23:01,654 check.warn(importable) 2026-04-21T10:23:01,654 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2026-04-21T10:23:01,655 !! 2026-04-21T10:23:01,656 ******************************************************************************** 2026-04-21T10:23:01,656 ############################ 2026-04-21T10:23:01,657 # Package would be ignored # 2026-04-21T10:23:01,657 ############################ 2026-04-21T10:23:01,657 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2026-04-21T10:23:01,658 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,659 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,660 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2026-04-21T10:23:01,660 to the `packages` configuration field. 2026-04-21T10:23:01,662 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,663 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,664 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,665 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2026-04-21T10:23:01,666 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2026-04-21T10:23:01,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,667 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,667 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,669 even if it does not contain any `.py` files. 2026-04-21T10:23:01,670 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,670 directory, all directories are treated like packages. 2026-04-21T10:23:01,670 ******************************************************************************** 2026-04-21T10:23:01,671 !! 2026-04-21T10:23:01,672 check.warn(importable) 2026-04-21T10:23:01,672 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.compiled.css' is absent from the `packages` configuration. 2026-04-21T10:23:01,672 !! 2026-04-21T10:23:01,674 ******************************************************************************** 2026-04-21T10:23:01,674 ############################ 2026-04-21T10:23:01,675 # Package would be ignored # 2026-04-21T10:23:01,675 ############################ 2026-04-21T10:23:01,676 Python recognizes 'multiqc.templates.default.compiled.css' as an importable package[^1], 2026-04-21T10:23:01,676 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,677 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,678 package, please make sure that 'multiqc.templates.default.compiled.css' is explicitly added 2026-04-21T10:23:01,678 to the `packages` configuration field. 2026-04-21T10:23:01,679 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,680 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,681 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,683 If you don't want 'multiqc.templates.default.compiled.css' to be distributed and are 2026-04-21T10:23:01,683 already explicitly excluding 'multiqc.templates.default.compiled.css' via 2026-04-21T10:23:01,684 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,684 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,685 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,686 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,688 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,688 even if it does not contain any `.py` files. 2026-04-21T10:23:01,689 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,689 directory, all directories are treated like packages. 2026-04-21T10:23:01,690 ******************************************************************************** 2026-04-21T10:23:01,690 !! 2026-04-21T10:23:01,690 check.warn(importable) 2026-04-21T10:23:01,691 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.compiled.js' is absent from the `packages` configuration. 2026-04-21T10:23:01,691 !! 2026-04-21T10:23:01,692 ******************************************************************************** 2026-04-21T10:23:01,692 ############################ 2026-04-21T10:23:01,693 # Package would be ignored # 2026-04-21T10:23:01,693 ############################ 2026-04-21T10:23:01,693 Python recognizes 'multiqc.templates.default.compiled.js' as an importable package[^1], 2026-04-21T10:23:01,694 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,694 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,695 package, please make sure that 'multiqc.templates.default.compiled.js' is explicitly added 2026-04-21T10:23:01,695 to the `packages` configuration field. 2026-04-21T10:23:01,696 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,697 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,698 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,699 If you don't want 'multiqc.templates.default.compiled.js' to be distributed and are 2026-04-21T10:23:01,700 already explicitly excluding 'multiqc.templates.default.compiled.js' via 2026-04-21T10:23:01,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,701 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,702 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,704 even if it does not contain any `.py` files. 2026-04-21T10:23:01,705 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,705 directory, all directories are treated like packages. 2026-04-21T10:23:01,706 ******************************************************************************** 2026-04-21T10:23:01,707 !! 2026-04-21T10:23:01,707 check.warn(importable) 2026-04-21T10:23:01,708 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js' is absent from the `packages` configuration. 2026-04-21T10:23:01,708 !! 2026-04-21T10:23:01,709 ******************************************************************************** 2026-04-21T10:23:01,709 ############################ 2026-04-21T10:23:01,710 # Package would be ignored # 2026-04-21T10:23:01,710 ############################ 2026-04-21T10:23:01,711 Python recognizes 'multiqc.templates.default.src.js' as an importable package[^1], 2026-04-21T10:23:01,712 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,713 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,713 package, please make sure that 'multiqc.templates.default.src.js' is explicitly added 2026-04-21T10:23:01,713 to the `packages` configuration field. 2026-04-21T10:23:01,714 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,714 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,714 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,715 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,716 If you don't want 'multiqc.templates.default.src.js' to be distributed and are 2026-04-21T10:23:01,717 already explicitly excluding 'multiqc.templates.default.src.js' via 2026-04-21T10:23:01,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,718 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,718 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,721 even if it does not contain any `.py` files. 2026-04-21T10:23:01,722 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,722 directory, all directories are treated like packages. 2026-04-21T10:23:01,723 ******************************************************************************** 2026-04-21T10:23:01,724 !! 2026-04-21T10:23:01,724 check.warn(importable) 2026-04-21T10:23:01,725 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js.plots' is absent from the `packages` configuration. 2026-04-21T10:23:01,725 !! 2026-04-21T10:23:01,726 ******************************************************************************** 2026-04-21T10:23:01,727 ############################ 2026-04-21T10:23:01,728 # Package would be ignored # 2026-04-21T10:23:01,728 ############################ 2026-04-21T10:23:01,729 Python recognizes 'multiqc.templates.default.src.js.plots' as an importable package[^1], 2026-04-21T10:23:01,729 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,730 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,731 package, please make sure that 'multiqc.templates.default.src.js.plots' is explicitly added 2026-04-21T10:23:01,731 to the `packages` configuration field. 2026-04-21T10:23:01,732 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,732 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,733 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,734 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,736 If you don't want 'multiqc.templates.default.src.js.plots' to be distributed and are 2026-04-21T10:23:01,736 already explicitly excluding 'multiqc.templates.default.src.js.plots' via 2026-04-21T10:23:01,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,738 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,738 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,739 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,739 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,740 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,741 even if it does not contain any `.py` files. 2026-04-21T10:23:01,741 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,741 directory, all directories are treated like packages. 2026-04-21T10:23:01,742 ******************************************************************************** 2026-04-21T10:23:01,742 !! 2026-04-21T10:23:01,743 check.warn(importable) 2026-04-21T10:23:01,743 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.js.toolbox' is absent from the `packages` configuration. 2026-04-21T10:23:01,744 !! 2026-04-21T10:23:01,744 ******************************************************************************** 2026-04-21T10:23:01,745 ############################ 2026-04-21T10:23:01,745 # Package would be ignored # 2026-04-21T10:23:01,745 ############################ 2026-04-21T10:23:01,746 Python recognizes 'multiqc.templates.default.src.js.toolbox' as an importable package[^1], 2026-04-21T10:23:01,746 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,747 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,748 package, please make sure that 'multiqc.templates.default.src.js.toolbox' is explicitly added 2026-04-21T10:23:01,748 to the `packages` configuration field. 2026-04-21T10:23:01,749 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,751 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,752 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,754 If you don't want 'multiqc.templates.default.src.js.toolbox' to be distributed and are 2026-04-21T10:23:01,754 already explicitly excluding 'multiqc.templates.default.src.js.toolbox' via 2026-04-21T10:23:01,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,756 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,756 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,759 even if it does not contain any `.py` files. 2026-04-21T10:23:01,760 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,760 directory, all directories are treated like packages. 2026-04-21T10:23:01,761 ******************************************************************************** 2026-04-21T10:23:01,762 !! 2026-04-21T10:23:01,762 check.warn(importable) 2026-04-21T10:23:01,763 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.scss' is absent from the `packages` configuration. 2026-04-21T10:23:01,764 !! 2026-04-21T10:23:01,764 ******************************************************************************** 2026-04-21T10:23:01,765 ############################ 2026-04-21T10:23:01,765 # Package would be ignored # 2026-04-21T10:23:01,765 ############################ 2026-04-21T10:23:01,766 Python recognizes 'multiqc.templates.default.src.scss' as an importable package[^1], 2026-04-21T10:23:01,766 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,767 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,767 package, please make sure that 'multiqc.templates.default.src.scss' is explicitly added 2026-04-21T10:23:01,767 to the `packages` configuration field. 2026-04-21T10:23:01,768 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,769 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,770 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,771 If you don't want 'multiqc.templates.default.src.scss' to be distributed and are 2026-04-21T10:23:01,772 already explicitly excluding 'multiqc.templates.default.src.scss' via 2026-04-21T10:23:01,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,773 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,774 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,777 even if it does not contain any `.py` files. 2026-04-21T10:23:01,778 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,778 directory, all directories are treated like packages. 2026-04-21T10:23:01,779 ******************************************************************************** 2026-04-21T10:23:01,780 !! 2026-04-21T10:23:01,780 check.warn(importable) 2026-04-21T10:23:01,781 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.src.scss.themes.dark' is absent from the `packages` configuration. 2026-04-21T10:23:01,781 !! 2026-04-21T10:23:01,782 ******************************************************************************** 2026-04-21T10:23:01,783 ############################ 2026-04-21T10:23:01,783 # Package would be ignored # 2026-04-21T10:23:01,784 ############################ 2026-04-21T10:23:01,784 Python recognizes 'multiqc.templates.default.src.scss.themes.dark' as an importable package[^1], 2026-04-21T10:23:01,785 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,786 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,786 package, please make sure that 'multiqc.templates.default.src.scss.themes.dark' is explicitly added 2026-04-21T10:23:01,787 to the `packages` configuration field. 2026-04-21T10:23:01,788 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,789 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,789 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,791 If you don't want 'multiqc.templates.default.src.scss.themes.dark' to be distributed and are 2026-04-21T10:23:01,791 already explicitly excluding 'multiqc.templates.default.src.scss.themes.dark' via 2026-04-21T10:23:01,791 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,792 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,793 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,794 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,795 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,796 even if it does not contain any `.py` files. 2026-04-21T10:23:01,796 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,797 directory, all directories are treated like packages. 2026-04-21T10:23:01,797 ******************************************************************************** 2026-04-21T10:23:01,798 !! 2026-04-21T10:23:01,799 check.warn(importable) 2026-04-21T10:23:01,799 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.default.toolbox' is absent from the `packages` configuration. 2026-04-21T10:23:01,800 !! 2026-04-21T10:23:01,801 ******************************************************************************** 2026-04-21T10:23:01,801 ############################ 2026-04-21T10:23:01,802 # Package would be ignored # 2026-04-21T10:23:01,803 ############################ 2026-04-21T10:23:01,803 Python recognizes 'multiqc.templates.default.toolbox' as an importable package[^1], 2026-04-21T10:23:01,804 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,805 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,805 package, please make sure that 'multiqc.templates.default.toolbox' is explicitly added 2026-04-21T10:23:01,806 to the `packages` configuration field. 2026-04-21T10:23:01,807 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,808 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,809 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,811 If you don't want 'multiqc.templates.default.toolbox' to be distributed and are 2026-04-21T10:23:01,811 already explicitly excluding 'multiqc.templates.default.toolbox' via 2026-04-21T10:23:01,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,812 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,814 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,815 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,816 even if it does not contain any `.py` files. 2026-04-21T10:23:01,816 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,817 directory, all directories are treated like packages. 2026-04-21T10:23:01,817 ******************************************************************************** 2026-04-21T10:23:01,818 !! 2026-04-21T10:23:01,818 check.warn(importable) 2026-04-21T10:23:01,819 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco' is absent from the `packages` configuration. 2026-04-21T10:23:01,819 !! 2026-04-21T10:23:01,820 ******************************************************************************** 2026-04-21T10:23:01,820 ############################ 2026-04-21T10:23:01,820 # Package would be ignored # 2026-04-21T10:23:01,821 ############################ 2026-04-21T10:23:01,821 Python recognizes 'multiqc.templates.disco' as an importable package[^1], 2026-04-21T10:23:01,821 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,822 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,822 package, please make sure that 'multiqc.templates.disco' is explicitly added 2026-04-21T10:23:01,823 to the `packages` configuration field. 2026-04-21T10:23:01,824 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,825 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,826 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,827 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,828 If you don't want 'multiqc.templates.disco' to be distributed and are 2026-04-21T10:23:01,828 already explicitly excluding 'multiqc.templates.disco' via 2026-04-21T10:23:01,829 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,829 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,830 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,831 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,832 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,834 even if it does not contain any `.py` files. 2026-04-21T10:23:01,834 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,835 directory, all directories are treated like packages. 2026-04-21T10:23:01,835 ******************************************************************************** 2026-04-21T10:23:01,836 !! 2026-04-21T10:23:01,837 check.warn(importable) 2026-04-21T10:23:01,837 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.compiled.css' is absent from the `packages` configuration. 2026-04-21T10:23:01,837 !! 2026-04-21T10:23:01,838 ******************************************************************************** 2026-04-21T10:23:01,839 ############################ 2026-04-21T10:23:01,839 # Package would be ignored # 2026-04-21T10:23:01,840 ############################ 2026-04-21T10:23:01,840 Python recognizes 'multiqc.templates.disco.compiled.css' as an importable package[^1], 2026-04-21T10:23:01,841 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,841 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,842 package, please make sure that 'multiqc.templates.disco.compiled.css' is explicitly added 2026-04-21T10:23:01,842 to the `packages` configuration field. 2026-04-21T10:23:01,843 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,843 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,843 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,844 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,846 If you don't want 'multiqc.templates.disco.compiled.css' to be distributed and are 2026-04-21T10:23:01,846 already explicitly excluding 'multiqc.templates.disco.compiled.css' via 2026-04-21T10:23:01,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,847 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,847 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,848 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,849 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,851 even if it does not contain any `.py` files. 2026-04-21T10:23:01,851 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,851 directory, all directories are treated like packages. 2026-04-21T10:23:01,852 ******************************************************************************** 2026-04-21T10:23:01,853 !! 2026-04-21T10:23:01,853 check.warn(importable) 2026-04-21T10:23:01,854 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.compiled.js' is absent from the `packages` configuration. 2026-04-21T10:23:01,854 !! 2026-04-21T10:23:01,855 ******************************************************************************** 2026-04-21T10:23:01,856 ############################ 2026-04-21T10:23:01,856 # Package would be ignored # 2026-04-21T10:23:01,857 ############################ 2026-04-21T10:23:01,857 Python recognizes 'multiqc.templates.disco.compiled.js' as an importable package[^1], 2026-04-21T10:23:01,858 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,858 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,859 package, please make sure that 'multiqc.templates.disco.compiled.js' is explicitly added 2026-04-21T10:23:01,859 to the `packages` configuration field. 2026-04-21T10:23:01,860 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,861 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,862 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,863 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,864 If you don't want 'multiqc.templates.disco.compiled.js' to be distributed and are 2026-04-21T10:23:01,865 already explicitly excluding 'multiqc.templates.disco.compiled.js' via 2026-04-21T10:23:01,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,867 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,867 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,868 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,871 even if it does not contain any `.py` files. 2026-04-21T10:23:01,871 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,871 directory, all directories are treated like packages. 2026-04-21T10:23:01,872 ******************************************************************************** 2026-04-21T10:23:01,872 !! 2026-04-21T10:23:01,873 check.warn(importable) 2026-04-21T10:23:01,873 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.src.js' is absent from the `packages` configuration. 2026-04-21T10:23:01,874 !! 2026-04-21T10:23:01,875 ******************************************************************************** 2026-04-21T10:23:01,875 ############################ 2026-04-21T10:23:01,875 # Package would be ignored # 2026-04-21T10:23:01,876 ############################ 2026-04-21T10:23:01,876 Python recognizes 'multiqc.templates.disco.src.js' as an importable package[^1], 2026-04-21T10:23:01,877 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,878 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,878 package, please make sure that 'multiqc.templates.disco.src.js' is explicitly added 2026-04-21T10:23:01,878 to the `packages` configuration field. 2026-04-21T10:23:01,879 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,881 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,882 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,883 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,884 If you don't want 'multiqc.templates.disco.src.js' to be distributed and are 2026-04-21T10:23:01,884 already explicitly excluding 'multiqc.templates.disco.src.js' via 2026-04-21T10:23:01,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,885 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,886 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,887 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,889 even if it does not contain any `.py` files. 2026-04-21T10:23:01,890 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,890 directory, all directories are treated like packages. 2026-04-21T10:23:01,891 ******************************************************************************** 2026-04-21T10:23:01,892 !! 2026-04-21T10:23:01,893 check.warn(importable) 2026-04-21T10:23:01,893 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.disco.src.scss' is absent from the `packages` configuration. 2026-04-21T10:23:01,893 !! 2026-04-21T10:23:01,894 ******************************************************************************** 2026-04-21T10:23:01,894 ############################ 2026-04-21T10:23:01,895 # Package would be ignored # 2026-04-21T10:23:01,895 ############################ 2026-04-21T10:23:01,895 Python recognizes 'multiqc.templates.disco.src.scss' as an importable package[^1], 2026-04-21T10:23:01,896 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,896 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,897 package, please make sure that 'multiqc.templates.disco.src.scss' is explicitly added 2026-04-21T10:23:01,897 to the `packages` configuration field. 2026-04-21T10:23:01,898 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,899 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,900 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,900 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,901 If you don't want 'multiqc.templates.disco.src.scss' to be distributed and are 2026-04-21T10:23:01,902 already explicitly excluding 'multiqc.templates.disco.src.scss' via 2026-04-21T10:23:01,902 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,902 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,903 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,904 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,905 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,906 even if it does not contain any `.py` files. 2026-04-21T10:23:01,907 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,907 directory, all directories are treated like packages. 2026-04-21T10:23:01,908 ******************************************************************************** 2026-04-21T10:23:01,909 !! 2026-04-21T10:23:01,909 check.warn(importable) 2026-04-21T10:23:01,910 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2026-04-21T10:23:01,910 !! 2026-04-21T10:23:01,911 ******************************************************************************** 2026-04-21T10:23:01,912 ############################ 2026-04-21T10:23:01,912 # Package would be ignored # 2026-04-21T10:23:01,913 ############################ 2026-04-21T10:23:01,913 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2026-04-21T10:23:01,914 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,914 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,915 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2026-04-21T10:23:01,915 to the `packages` configuration field. 2026-04-21T10:23:01,917 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,918 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,919 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,920 If you don't want 'multiqc.templates.gathered' to be distributed and are 2026-04-21T10:23:01,921 already explicitly excluding 'multiqc.templates.gathered' via 2026-04-21T10:23:01,921 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,921 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,922 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,923 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,926 even if it does not contain any `.py` files. 2026-04-21T10:23:01,926 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,927 directory, all directories are treated like packages. 2026-04-21T10:23:01,927 ******************************************************************************** 2026-04-21T10:23:01,928 !! 2026-04-21T10:23:01,929 check.warn(importable) 2026-04-21T10:23:01,929 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2026-04-21T10:23:01,930 !! 2026-04-21T10:23:01,931 ******************************************************************************** 2026-04-21T10:23:01,931 ############################ 2026-04-21T10:23:01,932 # Package would be ignored # 2026-04-21T10:23:01,932 ############################ 2026-04-21T10:23:01,933 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2026-04-21T10:23:01,933 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,934 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,935 package, please make sure that 'multiqc.templates.geo' is explicitly added 2026-04-21T10:23:01,935 to the `packages` configuration field. 2026-04-21T10:23:01,937 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,938 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,939 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,941 If you don't want 'multiqc.templates.geo' to be distributed and are 2026-04-21T10:23:01,942 already explicitly excluding 'multiqc.templates.geo' via 2026-04-21T10:23:01,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,943 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,945 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,948 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,948 even if it does not contain any `.py` files. 2026-04-21T10:23:01,949 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,949 directory, all directories are treated like packages. 2026-04-21T10:23:01,950 ******************************************************************************** 2026-04-21T10:23:01,951 !! 2026-04-21T10:23:01,951 check.warn(importable) 2026-04-21T10:23:01,952 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2026-04-21T10:23:01,952 !! 2026-04-21T10:23:01,953 ******************************************************************************** 2026-04-21T10:23:01,954 ############################ 2026-04-21T10:23:01,954 # Package would be ignored # 2026-04-21T10:23:01,955 ############################ 2026-04-21T10:23:01,955 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2026-04-21T10:23:01,955 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,957 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,957 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2026-04-21T10:23:01,958 to the `packages` configuration field. 2026-04-21T10:23:01,959 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,960 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,961 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,962 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,963 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2026-04-21T10:23:01,963 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2026-04-21T10:23:01,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,965 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,966 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,969 even if it does not contain any `.py` files. 2026-04-21T10:23:01,970 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,971 directory, all directories are treated like packages. 2026-04-21T10:23:01,971 ******************************************************************************** 2026-04-21T10:23:01,972 !! 2026-04-21T10:23:01,973 check.warn(importable) 2026-04-21T10:23:01,973 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2026-04-21T10:23:01,974 !! 2026-04-21T10:23:01,976 ******************************************************************************** 2026-04-21T10:23:01,976 ############################ 2026-04-21T10:23:01,977 # Package would be ignored # 2026-04-21T10:23:01,977 ############################ 2026-04-21T10:23:01,978 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2026-04-21T10:23:01,979 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:01,980 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:01,980 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2026-04-21T10:23:01,981 to the `packages` configuration field. 2026-04-21T10:23:01,982 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:01,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:01,983 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:01,984 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:01,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:01,986 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2026-04-21T10:23:01,986 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2026-04-21T10:23:01,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:01,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:01,988 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:01,988 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:01,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:01,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:01,991 even if it does not contain any `.py` files. 2026-04-21T10:23:01,992 On the other hand, currently there is no concept of package data 2026-04-21T10:23:01,992 directory, all directories are treated like packages. 2026-04-21T10:23:01,993 ******************************************************************************** 2026-04-21T10:23:01,994 !! 2026-04-21T10:23:01,994 check.warn(importable) 2026-04-21T10:23:01,995 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original' is absent from the `packages` configuration. 2026-04-21T10:23:01,995 !! 2026-04-21T10:23:01,996 ******************************************************************************** 2026-04-21T10:23:01,997 ############################ 2026-04-21T10:23:01,997 # Package would be ignored # 2026-04-21T10:23:01,998 ############################ 2026-04-21T10:23:01,998 Python recognizes 'multiqc.templates.original' as an importable package[^1], 2026-04-21T10:23:01,999 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,000 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,000 package, please make sure that 'multiqc.templates.original' is explicitly added 2026-04-21T10:23:02,001 to the `packages` configuration field. 2026-04-21T10:23:02,002 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,003 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,004 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,005 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,006 If you don't want 'multiqc.templates.original' to be distributed and are 2026-04-21T10:23:02,007 already explicitly excluding 'multiqc.templates.original' via 2026-04-21T10:23:02,007 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,008 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,008 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,009 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,012 even if it does not contain any `.py` files. 2026-04-21T10:23:02,012 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,013 directory, all directories are treated like packages. 2026-04-21T10:23:02,013 ******************************************************************************** 2026-04-21T10:23:02,014 !! 2026-04-21T10:23:02,015 check.warn(importable) 2026-04-21T10:23:02,015 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.css' is absent from the `packages` configuration. 2026-04-21T10:23:02,015 !! 2026-04-21T10:23:02,016 ******************************************************************************** 2026-04-21T10:23:02,017 ############################ 2026-04-21T10:23:02,017 # Package would be ignored # 2026-04-21T10:23:02,018 ############################ 2026-04-21T10:23:02,018 Python recognizes 'multiqc.templates.original.assets.css' as an importable package[^1], 2026-04-21T10:23:02,019 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,020 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,021 package, please make sure that 'multiqc.templates.original.assets.css' is explicitly added 2026-04-21T10:23:02,021 to the `packages` configuration field. 2026-04-21T10:23:02,022 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,023 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,024 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,025 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,026 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,027 If you don't want 'multiqc.templates.original.assets.css' to be distributed and are 2026-04-21T10:23:02,027 already explicitly excluding 'multiqc.templates.original.assets.css' via 2026-04-21T10:23:02,028 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,029 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,030 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,033 even if it does not contain any `.py` files. 2026-04-21T10:23:02,033 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,034 directory, all directories are treated like packages. 2026-04-21T10:23:02,035 ******************************************************************************** 2026-04-21T10:23:02,036 !! 2026-04-21T10:23:02,036 check.warn(importable) 2026-04-21T10:23:02,037 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.fonts' is absent from the `packages` configuration. 2026-04-21T10:23:02,037 !! 2026-04-21T10:23:02,038 ******************************************************************************** 2026-04-21T10:23:02,039 ############################ 2026-04-21T10:23:02,039 # Package would be ignored # 2026-04-21T10:23:02,039 ############################ 2026-04-21T10:23:02,040 Python recognizes 'multiqc.templates.original.assets.fonts' as an importable package[^1], 2026-04-21T10:23:02,040 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,041 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,042 package, please make sure that 'multiqc.templates.original.assets.fonts' is explicitly added 2026-04-21T10:23:02,042 to the `packages` configuration field. 2026-04-21T10:23:02,043 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,044 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,045 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,047 If you don't want 'multiqc.templates.original.assets.fonts' to be distributed and are 2026-04-21T10:23:02,047 already explicitly excluding 'multiqc.templates.original.assets.fonts' via 2026-04-21T10:23:02,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,049 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,050 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,052 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,053 even if it does not contain any `.py` files. 2026-04-21T10:23:02,053 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,054 directory, all directories are treated like packages. 2026-04-21T10:23:02,054 ******************************************************************************** 2026-04-21T10:23:02,055 !! 2026-04-21T10:23:02,056 check.warn(importable) 2026-04-21T10:23:02,056 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.img' is absent from the `packages` configuration. 2026-04-21T10:23:02,057 !! 2026-04-21T10:23:02,058 ******************************************************************************** 2026-04-21T10:23:02,058 ############################ 2026-04-21T10:23:02,059 # Package would be ignored # 2026-04-21T10:23:02,059 ############################ 2026-04-21T10:23:02,060 Python recognizes 'multiqc.templates.original.assets.img' as an importable package[^1], 2026-04-21T10:23:02,061 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,062 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,062 package, please make sure that 'multiqc.templates.original.assets.img' is explicitly added 2026-04-21T10:23:02,063 to the `packages` configuration field. 2026-04-21T10:23:02,064 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,065 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,066 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,067 If you don't want 'multiqc.templates.original.assets.img' to be distributed and are 2026-04-21T10:23:02,068 already explicitly excluding 'multiqc.templates.original.assets.img' via 2026-04-21T10:23:02,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,068 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,069 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,070 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,072 even if it does not contain any `.py` files. 2026-04-21T10:23:02,073 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,073 directory, all directories are treated like packages. 2026-04-21T10:23:02,074 ******************************************************************************** 2026-04-21T10:23:02,075 !! 2026-04-21T10:23:02,075 check.warn(importable) 2026-04-21T10:23:02,076 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js' is absent from the `packages` configuration. 2026-04-21T10:23:02,077 !! 2026-04-21T10:23:02,078 ******************************************************************************** 2026-04-21T10:23:02,078 ############################ 2026-04-21T10:23:02,079 # Package would be ignored # 2026-04-21T10:23:02,079 ############################ 2026-04-21T10:23:02,080 Python recognizes 'multiqc.templates.original.assets.js' as an importable package[^1], 2026-04-21T10:23:02,080 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,082 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,082 package, please make sure that 'multiqc.templates.original.assets.js' is explicitly added 2026-04-21T10:23:02,083 to the `packages` configuration field. 2026-04-21T10:23:02,084 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,084 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,085 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,086 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,088 If you don't want 'multiqc.templates.original.assets.js' to be distributed and are 2026-04-21T10:23:02,088 already explicitly excluding 'multiqc.templates.original.assets.js' via 2026-04-21T10:23:02,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,089 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,090 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,091 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,094 even if it does not contain any `.py` files. 2026-04-21T10:23:02,095 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,095 directory, all directories are treated like packages. 2026-04-21T10:23:02,095 ******************************************************************************** 2026-04-21T10:23:02,096 !! 2026-04-21T10:23:02,097 check.warn(importable) 2026-04-21T10:23:02,097 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js.packages' is absent from the `packages` configuration. 2026-04-21T10:23:02,098 !! 2026-04-21T10:23:02,099 ******************************************************************************** 2026-04-21T10:23:02,099 ############################ 2026-04-21T10:23:02,100 # Package would be ignored # 2026-04-21T10:23:02,100 ############################ 2026-04-21T10:23:02,101 Python recognizes 'multiqc.templates.original.assets.js.packages' as an importable package[^1], 2026-04-21T10:23:02,101 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,102 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,102 package, please make sure that 'multiqc.templates.original.assets.js.packages' is explicitly added 2026-04-21T10:23:02,103 to the `packages` configuration field. 2026-04-21T10:23:02,104 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,105 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,106 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,108 If you don't want 'multiqc.templates.original.assets.js.packages' to be distributed and are 2026-04-21T10:23:02,108 already explicitly excluding 'multiqc.templates.original.assets.js.packages' via 2026-04-21T10:23:02,109 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,110 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,111 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,114 even if it does not contain any `.py` files. 2026-04-21T10:23:02,114 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,115 directory, all directories are treated like packages. 2026-04-21T10:23:02,115 ******************************************************************************** 2026-04-21T10:23:02,116 !! 2026-04-21T10:23:02,117 check.warn(importable) 2026-04-21T10:23:02,118 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.original.assets.js.plots' is absent from the `packages` configuration. 2026-04-21T10:23:02,118 !! 2026-04-21T10:23:02,120 ******************************************************************************** 2026-04-21T10:23:02,120 ############################ 2026-04-21T10:23:02,121 # Package would be ignored # 2026-04-21T10:23:02,121 ############################ 2026-04-21T10:23:02,122 Python recognizes 'multiqc.templates.original.assets.js.plots' as an importable package[^1], 2026-04-21T10:23:02,122 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,123 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,123 package, please make sure that 'multiqc.templates.original.assets.js.plots' is explicitly added 2026-04-21T10:23:02,124 to the `packages` configuration field. 2026-04-21T10:23:02,125 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,126 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,127 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,128 If you don't want 'multiqc.templates.original.assets.js.plots' to be distributed and are 2026-04-21T10:23:02,129 already explicitly excluding 'multiqc.templates.original.assets.js.plots' via 2026-04-21T10:23:02,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,130 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,131 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,134 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,134 even if it does not contain any `.py` files. 2026-04-21T10:23:02,135 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,135 directory, all directories are treated like packages. 2026-04-21T10:23:02,136 ******************************************************************************** 2026-04-21T10:23:02,137 !! 2026-04-21T10:23:02,138 check.warn(importable) 2026-04-21T10:23:02,138 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2026-04-21T10:23:02,139 !! 2026-04-21T10:23:02,140 ******************************************************************************** 2026-04-21T10:23:02,140 ############################ 2026-04-21T10:23:02,141 # Package would be ignored # 2026-04-21T10:23:02,141 ############################ 2026-04-21T10:23:02,142 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2026-04-21T10:23:02,142 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,143 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,144 package, please make sure that 'multiqc.templates.sections' is explicitly added 2026-04-21T10:23:02,144 to the `packages` configuration field. 2026-04-21T10:23:02,145 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,146 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,147 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,148 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,149 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,150 If you don't want 'multiqc.templates.sections' to be distributed and are 2026-04-21T10:23:02,150 already explicitly excluding 'multiqc.templates.sections' via 2026-04-21T10:23:02,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,152 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,153 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,156 even if it does not contain any `.py` files. 2026-04-21T10:23:02,156 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,157 directory, all directories are treated like packages. 2026-04-21T10:23:02,157 ******************************************************************************** 2026-04-21T10:23:02,158 !! 2026-04-21T10:23:02,158 check.warn(importable) 2026-04-21T10:23:02,159 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2026-04-21T10:23:02,159 !! 2026-04-21T10:23:02,160 ******************************************************************************** 2026-04-21T10:23:02,161 ############################ 2026-04-21T10:23:02,161 # Package would be ignored # 2026-04-21T10:23:02,162 ############################ 2026-04-21T10:23:02,162 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2026-04-21T10:23:02,163 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,164 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,164 package, please make sure that 'multiqc.templates.simple' is explicitly added 2026-04-21T10:23:02,165 to the `packages` configuration field. 2026-04-21T10:23:02,166 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,166 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,167 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,168 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,170 If you don't want 'multiqc.templates.simple' to be distributed and are 2026-04-21T10:23:02,170 already explicitly excluding 'multiqc.templates.simple' via 2026-04-21T10:23:02,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,172 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,173 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,174 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,175 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,176 even if it does not contain any `.py` files. 2026-04-21T10:23:02,176 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,177 directory, all directories are treated like packages. 2026-04-21T10:23:02,177 ******************************************************************************** 2026-04-21T10:23:02,179 !! 2026-04-21T10:23:02,179 check.warn(importable) 2026-04-21T10:23:02,179 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2026-04-21T10:23:02,180 !! 2026-04-21T10:23:02,181 ******************************************************************************** 2026-04-21T10:23:02,181 ############################ 2026-04-21T10:23:02,182 # Package would be ignored # 2026-04-21T10:23:02,182 ############################ 2026-04-21T10:23:02,182 Python recognizes 'multiqc.utils' as an importable package[^1], 2026-04-21T10:23:02,183 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,184 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,184 package, please make sure that 'multiqc.utils' is explicitly added 2026-04-21T10:23:02,185 to the `packages` configuration field. 2026-04-21T10:23:02,186 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,186 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,187 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,188 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,188 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,190 If you don't want 'multiqc.utils' to be distributed and are 2026-04-21T10:23:02,190 already explicitly excluding 'multiqc.utils' via 2026-04-21T10:23:02,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,192 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,193 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,196 even if it does not contain any `.py` files. 2026-04-21T10:23:02,196 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,197 directory, all directories are treated like packages. 2026-04-21T10:23:02,197 ******************************************************************************** 2026-04-21T10:23:02,198 !! 2026-04-21T10:23:02,199 check.warn(importable) 2026-04-21T10:23:02,199 /tmp/pip-build-env-abgk3o4r/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'multiqc.utils.material_icons' is absent from the `packages` configuration. 2026-04-21T10:23:02,200 !! 2026-04-21T10:23:02,201 ******************************************************************************** 2026-04-21T10:23:02,201 ############################ 2026-04-21T10:23:02,202 # Package would be ignored # 2026-04-21T10:23:02,202 ############################ 2026-04-21T10:23:02,203 Python recognizes 'multiqc.utils.material_icons' as an importable package[^1], 2026-04-21T10:23:02,203 but it is absent from setuptools' `packages` configuration. 2026-04-21T10:23:02,204 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-21T10:23:02,205 package, please make sure that 'multiqc.utils.material_icons' is explicitly added 2026-04-21T10:23:02,205 to the `packages` configuration field. 2026-04-21T10:23:02,207 Alternatively, you can also rely on setuptools' discovery methods 2026-04-21T10:23:02,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-21T10:23:02,207 instead of `find_packages(...)`/`find:`). 2026-04-21T10:23:02,208 You can read more about "package discovery" on setuptools documentation page: 2026-04-21T10:23:02,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-21T10:23:02,210 If you don't want 'multiqc.utils.material_icons' to be distributed and are 2026-04-21T10:23:02,210 already explicitly excluding 'multiqc.utils.material_icons' via 2026-04-21T10:23:02,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-21T10:23:02,211 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-21T10:23:02,212 combination with a more fine grained `package-data` configuration. 2026-04-21T10:23:02,213 You can read more about "package data files" on setuptools documentation page: 2026-04-21T10:23:02,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-21T10:23:02,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-21T10:23:02,215 even if it does not contain any `.py` files. 2026-04-21T10:23:02,216 On the other hand, currently there is no concept of package data 2026-04-21T10:23:02,216 directory, all directories are treated like packages. 2026-04-21T10:23:02,217 ******************************************************************************** 2026-04-21T10:23:02,218 !! 2026-04-21T10:23:02,218 check.warn(importable) 2026-04-21T10:23:02,219 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2026-04-21T10:23:02,219 copying multiqc/py.typed -> build/lib/multiqc 2026-04-21T10:23:02,220 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2026-04-21T10:23:02,220 creating build/lib/multiqc/core 2026-04-21T10:23:02,221 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2026-04-21T10:23:02,221 copying multiqc/core/ai.py -> build/lib/multiqc/core 2026-04-21T10:23:02,222 copying multiqc/core/config_check.py -> build/lib/multiqc/core 2026-04-21T10:23:02,222 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2026-04-21T10:23:02,222 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2026-04-21T10:23:02,223 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2026-04-21T10:23:02,224 copying multiqc/core/log_and_rich.py -> build/lib/multiqc/core 2026-04-21T10:23:02,224 copying multiqc/core/order_modules_and_sections.py -> build/lib/multiqc/core 2026-04-21T10:23:02,225 copying multiqc/core/plot_data_store.py -> build/lib/multiqc/core 2026-04-21T10:23:02,225 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2026-04-21T10:23:02,226 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2026-04-21T10:23:02,226 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2026-04-21T10:23:02,227 copying multiqc/core/tmp_dir.py -> build/lib/multiqc/core 2026-04-21T10:23:02,227 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2026-04-21T10:23:02,228 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2026-04-21T10:23:02,228 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2026-04-21T10:23:02,229 creating build/lib/multiqc/core/special_case_modules 2026-04-21T10:23:02,229 copying multiqc/core/special_case_modules/custom_content.py -> build/lib/multiqc/core/special_case_modules 2026-04-21T10:23:02,230 copying multiqc/core/special_case_modules/load_multiqc_data.py -> build/lib/multiqc/core/special_case_modules 2026-04-21T10:23:02,230 copying multiqc/core/special_case_modules/profile_runtime.py -> build/lib/multiqc/core/special_case_modules 2026-04-21T10:23:02,231 copying multiqc/core/special_case_modules/software_versions.py -> build/lib/multiqc/core/special_case_modules 2026-04-21T10:23:02,231 creating build/lib/multiqc/modules 2026-04-21T10:23:02,232 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2026-04-21T10:23:02,233 creating build/lib/multiqc/modules/adapterremoval 2026-04-21T10:23:02,233 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2026-04-21T10:23:02,234 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2026-04-21T10:23:02,234 creating build/lib/multiqc/modules/afterqc 2026-04-21T10:23:02,234 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2026-04-21T10:23:02,235 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2026-04-21T10:23:02,235 creating build/lib/multiqc/modules/anglerfish 2026-04-21T10:23:02,236 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2026-04-21T10:23:02,236 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2026-04-21T10:23:02,236 creating build/lib/multiqc/modules/ataqv 2026-04-21T10:23:02,237 copying multiqc/modules/ataqv/__init__.py -> build/lib/multiqc/modules/ataqv 2026-04-21T10:23:02,237 copying multiqc/modules/ataqv/ataqv.py -> build/lib/multiqc/modules/ataqv 2026-04-21T10:23:02,238 creating build/lib/multiqc/modules/bakta 2026-04-21T10:23:02,238 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2026-04-21T10:23:02,239 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2026-04-21T10:23:02,239 creating build/lib/multiqc/modules/bamdst 2026-04-21T10:23:02,240 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2026-04-21T10:23:02,240 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2026-04-21T10:23:02,241 creating build/lib/multiqc/modules/bamtools 2026-04-21T10:23:02,241 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2026-04-21T10:23:02,241 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2026-04-21T10:23:02,242 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2026-04-21T10:23:02,242 creating build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,243 copying multiqc/modules/bases2fastq/__init__.py -> build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,243 copying multiqc/modules/bases2fastq/bases2fastq.py -> build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,244 copying multiqc/modules/bases2fastq/plot_project_runs.py -> build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,244 copying multiqc/modules/bases2fastq/plot_runs.py -> build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,245 copying multiqc/modules/bases2fastq/plot_samples.py -> build/lib/multiqc/modules/bases2fastq 2026-04-21T10:23:02,245 creating build/lib/multiqc/modules/bbduk 2026-04-21T10:23:02,246 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2026-04-21T10:23:02,247 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2026-04-21T10:23:02,247 creating build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,248 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,248 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,249 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,249 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,250 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,250 copying multiqc/modules/bbmap/plot_bbsplit.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,251 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,252 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,252 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,253 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,253 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,254 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,254 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,255 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,255 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,256 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2026-04-21T10:23:02,256 creating build/lib/multiqc/modules/bcftools 2026-04-21T10:23:02,257 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2026-04-21T10:23:02,257 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2026-04-21T10:23:02,258 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2026-04-21T10:23:02,258 creating build/lib/multiqc/modules/bcl2fastq 2026-04-21T10:23:02,259 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2026-04-21T10:23:02,259 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2026-04-21T10:23:02,260 creating build/lib/multiqc/modules/bclconvert 2026-04-21T10:23:02,260 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2026-04-21T10:23:02,261 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2026-04-21T10:23:02,261 creating build/lib/multiqc/modules/biobambam2 2026-04-21T10:23:02,262 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2026-04-21T10:23:02,262 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2026-04-21T10:23:02,263 creating build/lib/multiqc/modules/biobloomtools 2026-04-21T10:23:02,263 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2026-04-21T10:23:02,264 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2026-04-21T10:23:02,264 creating build/lib/multiqc/modules/biscuit 2026-04-21T10:23:02,265 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2026-04-21T10:23:02,265 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2026-04-21T10:23:02,266 creating build/lib/multiqc/modules/biscuit/tests 2026-04-21T10:23:02,266 copying multiqc/modules/biscuit/tests/__init__.py -> build/lib/multiqc/modules/biscuit/tests 2026-04-21T10:23:02,267 copying multiqc/modules/biscuit/tests/test_biscuit.py -> build/lib/multiqc/modules/biscuit/tests 2026-04-21T10:23:02,267 creating build/lib/multiqc/modules/bismark 2026-04-21T10:23:02,268 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2026-04-21T10:23:02,269 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2026-04-21T10:23:02,269 creating build/lib/multiqc/modules/bowtie1 2026-04-21T10:23:02,270 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2026-04-21T10:23:02,270 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2026-04-21T10:23:02,271 creating build/lib/multiqc/modules/bowtie2 2026-04-21T10:23:02,271 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2026-04-21T10:23:02,272 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2026-04-21T10:23:02,273 creating build/lib/multiqc/modules/busco 2026-04-21T10:23:02,273 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2026-04-21T10:23:02,274 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2026-04-21T10:23:02,275 creating build/lib/multiqc/modules/bustools 2026-04-21T10:23:02,275 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2026-04-21T10:23:02,276 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2026-04-21T10:23:02,276 creating build/lib/multiqc/modules/ccs 2026-04-21T10:23:02,276 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2026-04-21T10:23:02,277 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2026-04-21T10:23:02,277 creating build/lib/multiqc/modules/ccs/tests 2026-04-21T10:23:02,278 copying multiqc/modules/ccs/tests/__init__.py -> build/lib/multiqc/modules/ccs/tests 2026-04-21T10:23:02,278 copying multiqc/modules/ccs/tests/test_ccs.py -> build/lib/multiqc/modules/ccs/tests 2026-04-21T10:23:02,279 creating build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,279 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,280 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,280 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,281 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,281 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2026-04-21T10:23:02,281 creating build/lib/multiqc/modules/cellranger_arc 2026-04-21T10:23:02,282 copying multiqc/modules/cellranger_arc/__init__.py -> build/lib/multiqc/modules/cellranger_arc 2026-04-21T10:23:02,282 copying multiqc/modules/cellranger_arc/cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc 2026-04-21T10:23:02,283 copying multiqc/modules/cellranger_arc/utils.py -> build/lib/multiqc/modules/cellranger_arc 2026-04-21T10:23:02,283 creating build/lib/multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:02,284 copying multiqc/modules/cellranger_arc/tests/__init__.py -> build/lib/multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:02,284 copying multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:02,285 creating build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,285 copying multiqc/modules/cells2stats/__init__.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,285 copying multiqc/modules/cells2stats/cells2stats.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,286 copying multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,286 copying multiqc/modules/cells2stats/cells2stats_tables.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,287 copying multiqc/modules/cells2stats/queries.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,287 copying multiqc/modules/cells2stats/utils.py -> build/lib/multiqc/modules/cells2stats 2026-04-21T10:23:02,288 creating build/lib/multiqc/modules/checkm 2026-04-21T10:23:02,288 copying multiqc/modules/checkm/__init__.py -> build/lib/multiqc/modules/checkm 2026-04-21T10:23:02,289 copying multiqc/modules/checkm/checkm.py -> build/lib/multiqc/modules/checkm 2026-04-21T10:23:02,289 creating build/lib/multiqc/modules/checkm2 2026-04-21T10:23:02,290 copying multiqc/modules/checkm2/__init__.py -> build/lib/multiqc/modules/checkm2 2026-04-21T10:23:02,290 copying multiqc/modules/checkm2/checkm2.py -> build/lib/multiqc/modules/checkm2 2026-04-21T10:23:02,291 creating build/lib/multiqc/modules/checkqc 2026-04-21T10:23:02,291 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2026-04-21T10:23:02,291 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2026-04-21T10:23:02,292 creating build/lib/multiqc/modules/clipandmerge 2026-04-21T10:23:02,292 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2026-04-21T10:23:02,293 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2026-04-21T10:23:02,294 creating build/lib/multiqc/modules/clusterflow 2026-04-21T10:23:02,294 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2026-04-21T10:23:02,294 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2026-04-21T10:23:02,295 creating build/lib/multiqc/modules/conpair 2026-04-21T10:23:02,295 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2026-04-21T10:23:02,296 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2026-04-21T10:23:02,296 creating build/lib/multiqc/modules/cutadapt 2026-04-21T10:23:02,297 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2026-04-21T10:23:02,297 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2026-04-21T10:23:02,297 creating build/lib/multiqc/modules/damageprofiler 2026-04-21T10:23:02,298 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2026-04-21T10:23:02,300 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2026-04-21T10:23:02,303 creating build/lib/multiqc/modules/dedup 2026-04-21T10:23:02,304 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2026-04-21T10:23:02,306 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2026-04-21T10:23:02,308 creating build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,309 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,311 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,314 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,316 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,319 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,321 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,324 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,326 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,328 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,331 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,333 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2026-04-21T10:23:02,335 creating build/lib/multiqc/modules/diamond 2026-04-21T10:23:02,336 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2026-04-21T10:23:02,338 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2026-04-21T10:23:02,341 creating build/lib/multiqc/modules/disambiguate 2026-04-21T10:23:02,342 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2026-04-21T10:23:02,344 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2026-04-21T10:23:02,346 creating build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,347 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,349 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,352 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,356 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,359 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,361 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,363 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,366 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,368 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,371 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,373 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,376 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,378 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,380 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,382 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,384 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,386 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,389 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2026-04-21T10:23:02,391 creating build/lib/multiqc/modules/dragen/tests 2026-04-21T10:23:02,392 copying multiqc/modules/dragen/tests/__init__.py -> build/lib/multiqc/modules/dragen/tests 2026-04-21T10:23:02,394 copying multiqc/modules/dragen/tests/test_dragen.py -> build/lib/multiqc/modules/dragen/tests 2026-04-21T10:23:02,397 creating build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,398 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,400 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,402 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,405 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,407 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,410 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,413 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2026-04-21T10:23:02,415 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2026-04-21T10:23:02,416 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2026-04-21T10:23:02,419 creating build/lib/multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:02,420 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:02,422 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:02,424 creating build/lib/multiqc/modules/fastp 2026-04-21T10:23:02,425 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2026-04-21T10:23:02,427 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2026-04-21T10:23:02,430 creating build/lib/multiqc/modules/fastq_screen 2026-04-21T10:23:02,431 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2026-04-21T10:23:02,434 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2026-04-21T10:23:02,436 creating build/lib/multiqc/modules/fastqc 2026-04-21T10:23:02,437 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2026-04-21T10:23:02,439 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2026-04-21T10:23:02,443 creating build/lib/multiqc/modules/fastqc/assets/css 2026-04-21T10:23:02,444 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2026-04-21T10:23:02,446 creating build/lib/multiqc/modules/fastqc/assets/js 2026-04-21T10:23:02,447 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2026-04-21T10:23:02,450 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:02,451 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:02,453 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:02,455 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:02,457 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:02,459 creating build/lib/multiqc/modules/featurecounts 2026-04-21T10:23:02,460 copying multiqc/modules/featurecounts/__init__.py -> build/lib/multiqc/modules/featurecounts 2026-04-21T10:23:02,462 copying multiqc/modules/featurecounts/featurecounts.py -> build/lib/multiqc/modules/featurecounts 2026-04-21T10:23:02,464 creating build/lib/multiqc/modules/fgbio 2026-04-21T10:23:02,465 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2026-04-21T10:23:02,467 copying multiqc/modules/fgbio/error_rate_by_read_position.py -> build/lib/multiqc/modules/fgbio 2026-04-21T10:23:02,470 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2026-04-21T10:23:02,472 copying multiqc/modules/fgbio/group_reads_by_umi.py -> build/lib/multiqc/modules/fgbio 2026-04-21T10:23:02,474 creating build/lib/multiqc/modules/filtlong 2026-04-21T10:23:02,475 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2026-04-21T10:23:02,478 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2026-04-21T10:23:02,480 creating build/lib/multiqc/modules/flash 2026-04-21T10:23:02,481 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2026-04-21T10:23:02,483 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2026-04-21T10:23:02,486 creating build/lib/multiqc/modules/flexbar 2026-04-21T10:23:02,487 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2026-04-21T10:23:02,489 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2026-04-21T10:23:02,491 creating build/lib/multiqc/modules/freyja 2026-04-21T10:23:02,492 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2026-04-21T10:23:02,495 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2026-04-21T10:23:02,497 creating build/lib/multiqc/modules/ganon 2026-04-21T10:23:02,498 copying multiqc/modules/ganon/__init__.py -> build/lib/multiqc/modules/ganon 2026-04-21T10:23:02,500 copying multiqc/modules/ganon/ganon.py -> build/lib/multiqc/modules/ganon 2026-04-21T10:23:02,503 creating build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,504 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,506 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,509 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,512 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,514 copying multiqc/modules/gatk/utils.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,516 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2026-04-21T10:23:02,519 creating build/lib/multiqc/modules/gffcompare 2026-04-21T10:23:02,520 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2026-04-21T10:23:02,522 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2026-04-21T10:23:02,524 creating build/lib/multiqc/modules/glimpse 2026-04-21T10:23:02,525 copying multiqc/modules/glimpse/__init__.py -> build/lib/multiqc/modules/glimpse 2026-04-21T10:23:02,527 copying multiqc/modules/glimpse/err_grp.py -> build/lib/multiqc/modules/glimpse 2026-04-21T10:23:02,530 copying multiqc/modules/glimpse/err_spl.py -> build/lib/multiqc/modules/glimpse 2026-04-21T10:23:02,532 copying multiqc/modules/glimpse/glimpse.py -> build/lib/multiqc/modules/glimpse 2026-04-21T10:23:02,534 creating build/lib/multiqc/modules/goleft_indexcov 2026-04-21T10:23:02,535 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2026-04-21T10:23:02,537 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2026-04-21T10:23:02,539 creating build/lib/multiqc/modules/gopeaks 2026-04-21T10:23:02,540 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2026-04-21T10:23:02,542 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2026-04-21T10:23:02,544 creating build/lib/multiqc/modules/gtdbtk 2026-04-21T10:23:02,545 copying multiqc/modules/gtdbtk/__init__.py -> build/lib/multiqc/modules/gtdbtk 2026-04-21T10:23:02,547 copying multiqc/modules/gtdbtk/gtdbtk.py -> build/lib/multiqc/modules/gtdbtk 2026-04-21T10:23:02,550 creating build/lib/multiqc/modules/haplocheck 2026-04-21T10:23:02,551 copying multiqc/modules/haplocheck/__init__.py -> build/lib/multiqc/modules/haplocheck 2026-04-21T10:23:02,553 copying multiqc/modules/haplocheck/haplocheck.py -> build/lib/multiqc/modules/haplocheck 2026-04-21T10:23:02,555 creating build/lib/multiqc/modules/happy 2026-04-21T10:23:02,556 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2026-04-21T10:23:02,558 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2026-04-21T10:23:02,561 creating build/lib/multiqc/modules/hicexplorer 2026-04-21T10:23:02,562 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2026-04-21T10:23:02,564 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2026-04-21T10:23:02,567 creating build/lib/multiqc/modules/hicpro 2026-04-21T10:23:02,568 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2026-04-21T10:23:02,570 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2026-04-21T10:23:02,573 creating build/lib/multiqc/modules/hicup 2026-04-21T10:23:02,574 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2026-04-21T10:23:02,576 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2026-04-21T10:23:02,579 creating build/lib/multiqc/modules/hifiasm 2026-04-21T10:23:02,580 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2026-04-21T10:23:02,582 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2026-04-21T10:23:02,584 creating build/lib/multiqc/modules/hisat2 2026-04-21T10:23:02,585 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2026-04-21T10:23:02,587 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2026-04-21T10:23:02,590 creating build/lib/multiqc/modules/homer 2026-04-21T10:23:02,591 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2026-04-21T10:23:02,593 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2026-04-21T10:23:02,595 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2026-04-21T10:23:02,598 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2026-04-21T10:23:02,601 creating build/lib/multiqc/modules/hops 2026-04-21T10:23:02,601 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2026-04-21T10:23:02,604 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2026-04-21T10:23:02,606 creating build/lib/multiqc/modules/hostile 2026-04-21T10:23:02,607 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2026-04-21T10:23:02,609 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2026-04-21T10:23:02,611 creating build/lib/multiqc/modules/htseq 2026-04-21T10:23:02,612 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2026-04-21T10:23:02,614 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2026-04-21T10:23:02,617 creating build/lib/multiqc/modules/humid 2026-04-21T10:23:02,618 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,620 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,622 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,624 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,626 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,628 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2026-04-21T10:23:02,630 creating build/lib/multiqc/modules/interop 2026-04-21T10:23:02,631 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2026-04-21T10:23:02,633 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2026-04-21T10:23:02,636 creating build/lib/multiqc/modules/isoseq 2026-04-21T10:23:02,637 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2026-04-21T10:23:02,639 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2026-04-21T10:23:02,642 creating build/lib/multiqc/modules/ivar 2026-04-21T10:23:02,643 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2026-04-21T10:23:02,645 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2026-04-21T10:23:02,648 creating build/lib/multiqc/modules/jcvi 2026-04-21T10:23:02,649 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2026-04-21T10:23:02,651 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2026-04-21T10:23:02,654 creating build/lib/multiqc/modules/jellyfish 2026-04-21T10:23:02,655 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2026-04-21T10:23:02,657 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2026-04-21T10:23:02,659 creating build/lib/multiqc/modules/kaiju 2026-04-21T10:23:02,660 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2026-04-21T10:23:02,663 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2026-04-21T10:23:02,665 creating build/lib/multiqc/modules/kallisto 2026-04-21T10:23:02,666 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2026-04-21T10:23:02,668 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2026-04-21T10:23:02,671 creating build/lib/multiqc/modules/kat 2026-04-21T10:23:02,672 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2026-04-21T10:23:02,674 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2026-04-21T10:23:02,676 creating build/lib/multiqc/modules/kraken 2026-04-21T10:23:02,677 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2026-04-21T10:23:02,680 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2026-04-21T10:23:02,683 creating build/lib/multiqc/modules/leehom 2026-04-21T10:23:02,684 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2026-04-21T10:23:02,686 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2026-04-21T10:23:02,688 creating build/lib/multiqc/modules/librarian 2026-04-21T10:23:02,690 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2026-04-21T10:23:02,692 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2026-04-21T10:23:02,695 creating build/lib/multiqc/modules/lima 2026-04-21T10:23:02,696 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2026-04-21T10:23:02,698 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2026-04-21T10:23:02,701 creating build/lib/multiqc/modules/longranger 2026-04-21T10:23:02,702 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2026-04-21T10:23:02,705 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2026-04-21T10:23:02,708 creating build/lib/multiqc/modules/macs2 2026-04-21T10:23:02,709 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2026-04-21T10:23:02,711 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2026-04-21T10:23:02,714 creating build/lib/multiqc/modules/malt 2026-04-21T10:23:02,715 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2026-04-21T10:23:02,717 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2026-04-21T10:23:02,720 creating build/lib/multiqc/modules/mapdamage 2026-04-21T10:23:02,721 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2026-04-21T10:23:02,724 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2026-04-21T10:23:02,727 creating build/lib/multiqc/modules/megahit 2026-04-21T10:23:02,729 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2026-04-21T10:23:02,731 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2026-04-21T10:23:02,734 creating build/lib/multiqc/modules/metaphlan 2026-04-21T10:23:02,735 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2026-04-21T10:23:02,738 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2026-04-21T10:23:02,740 creating build/lib/multiqc/modules/methurator 2026-04-21T10:23:02,742 copying multiqc/modules/methurator/__init__.py -> build/lib/multiqc/modules/methurator 2026-04-21T10:23:02,744 copying multiqc/modules/methurator/methurator.py -> build/lib/multiqc/modules/methurator 2026-04-21T10:23:02,747 creating build/lib/multiqc/modules/methylqa 2026-04-21T10:23:02,748 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2026-04-21T10:23:02,751 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2026-04-21T10:23:02,754 creating build/lib/multiqc/modules/mgikit 2026-04-21T10:23:02,755 copying multiqc/modules/mgikit/__init__.py -> build/lib/multiqc/modules/mgikit 2026-04-21T10:23:02,758 copying multiqc/modules/mgikit/mgikit.py -> build/lib/multiqc/modules/mgikit 2026-04-21T10:23:02,761 creating build/lib/multiqc/modules/minionqc 2026-04-21T10:23:02,763 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2026-04-21T10:23:02,765 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2026-04-21T10:23:02,768 creating build/lib/multiqc/modules/mirtop 2026-04-21T10:23:02,770 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2026-04-21T10:23:02,772 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2026-04-21T10:23:02,775 creating build/lib/multiqc/modules/mirtrace 2026-04-21T10:23:02,777 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2026-04-21T10:23:02,779 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2026-04-21T10:23:02,782 creating build/lib/multiqc/modules/mosaicatcher 2026-04-21T10:23:02,783 copying multiqc/modules/mosaicatcher/__init__.py -> build/lib/multiqc/modules/mosaicatcher 2026-04-21T10:23:02,786 copying multiqc/modules/mosaicatcher/mosaicatcher.py -> build/lib/multiqc/modules/mosaicatcher 2026-04-21T10:23:02,788 creating build/lib/multiqc/modules/mosdepth 2026-04-21T10:23:02,790 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2026-04-21T10:23:02,792 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2026-04-21T10:23:02,795 creating build/lib/multiqc/modules/mosdepth/tests 2026-04-21T10:23:02,796 copying multiqc/modules/mosdepth/tests/__init__.py -> build/lib/multiqc/modules/mosdepth/tests 2026-04-21T10:23:02,799 copying multiqc/modules/mosdepth/tests/test_gen_stats.py -> build/lib/multiqc/modules/mosdepth/tests 2026-04-21T10:23:02,801 creating build/lib/multiqc/modules/motus 2026-04-21T10:23:02,802 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2026-04-21T10:23:02,804 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2026-04-21T10:23:02,807 creating build/lib/multiqc/modules/mtnucratio 2026-04-21T10:23:02,808 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2026-04-21T10:23:02,811 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2026-04-21T10:23:02,813 creating build/lib/multiqc/modules/multivcfanalyzer 2026-04-21T10:23:02,815 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2026-04-21T10:23:02,817 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2026-04-21T10:23:02,820 creating build/lib/multiqc/modules/nanoq 2026-04-21T10:23:02,821 copying multiqc/modules/nanoq/__init__.py -> build/lib/multiqc/modules/nanoq 2026-04-21T10:23:02,824 copying multiqc/modules/nanoq/nanoq.py -> build/lib/multiqc/modules/nanoq 2026-04-21T10:23:02,827 creating build/lib/multiqc/modules/nanostat 2026-04-21T10:23:02,828 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2026-04-21T10:23:02,830 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2026-04-21T10:23:02,833 creating build/lib/multiqc/modules/nextclade 2026-04-21T10:23:02,835 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2026-04-21T10:23:02,837 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2026-04-21T10:23:02,840 creating build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,842 copying multiqc/modules/ngsbits/__init__.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,844 copying multiqc/modules/ngsbits/mappingqc.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,847 copying multiqc/modules/ngsbits/ngsbits.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,849 copying multiqc/modules/ngsbits/readqc.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,852 copying multiqc/modules/ngsbits/samplegender.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,855 copying multiqc/modules/ngsbits/utils.py -> build/lib/multiqc/modules/ngsbits 2026-04-21T10:23:02,857 creating build/lib/multiqc/modules/ngsderive 2026-04-21T10:23:02,858 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2026-04-21T10:23:02,861 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2026-04-21T10:23:02,864 creating build/lib/multiqc/modules/nonpareil 2026-04-21T10:23:02,865 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2026-04-21T10:23:02,868 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2026-04-21T10:23:02,871 creating build/lib/multiqc/modules/odgi 2026-04-21T10:23:02,872 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2026-04-21T10:23:02,874 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2026-04-21T10:23:02,878 creating build/lib/multiqc/modules/optitype 2026-04-21T10:23:02,879 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2026-04-21T10:23:02,881 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2026-04-21T10:23:02,884 creating build/lib/multiqc/modules/pairtools 2026-04-21T10:23:02,885 copying multiqc/modules/pairtools/__init__.py -> build/lib/multiqc/modules/pairtools 2026-04-21T10:23:02,888 copying multiqc/modules/pairtools/pairtools.py -> build/lib/multiqc/modules/pairtools 2026-04-21T10:23:02,891 copying multiqc/modules/pairtools/params.yml -> build/lib/multiqc/modules/pairtools 2026-04-21T10:23:02,893 copying multiqc/modules/pairtools/utils.py -> build/lib/multiqc/modules/pairtools 2026-04-21T10:23:02,896 creating build/lib/multiqc/modules/pangolin 2026-04-21T10:23:02,897 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2026-04-21T10:23:02,900 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2026-04-21T10:23:02,902 creating build/lib/multiqc/modules/pbmarkdup 2026-04-21T10:23:02,904 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2026-04-21T10:23:02,906 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2026-04-21T10:23:02,909 creating build/lib/multiqc/modules/peddy 2026-04-21T10:23:02,910 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2026-04-21T10:23:02,913 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2026-04-21T10:23:02,915 creating build/lib/multiqc/modules/percolator 2026-04-21T10:23:02,917 copying multiqc/modules/percolator/__init__.py -> build/lib/multiqc/modules/percolator 2026-04-21T10:23:02,919 copying multiqc/modules/percolator/percolator.py -> build/lib/multiqc/modules/percolator 2026-04-21T10:23:02,922 creating build/lib/multiqc/modules/phantompeakqualtools 2026-04-21T10:23:02,923 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2026-04-21T10:23:02,926 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2026-04-21T10:23:02,928 creating build/lib/multiqc/modules/picard 2026-04-21T10:23:02,929 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,932 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,935 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,938 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,941 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,944 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,948 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,951 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,955 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,958 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,962 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,965 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,968 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,971 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,975 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,978 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,981 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,984 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,988 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,991 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,995 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:02,998 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:03,001 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:03,005 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2026-04-21T10:23:03,008 creating build/lib/multiqc/modules/picard/tests 2026-04-21T10:23:03,009 copying multiqc/modules/picard/tests/__init__.py -> build/lib/multiqc/modules/picard/tests 2026-04-21T10:23:03,012 copying multiqc/modules/picard/tests/test_picard.py -> build/lib/multiqc/modules/picard/tests 2026-04-21T10:23:03,014 creating build/lib/multiqc/modules/porechop 2026-04-21T10:23:03,016 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2026-04-21T10:23:03,019 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2026-04-21T10:23:03,022 creating build/lib/multiqc/modules/preseq 2026-04-21T10:23:03,024 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2026-04-21T10:23:03,027 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2026-04-21T10:23:03,032 creating build/lib/multiqc/modules/prinseqplusplus 2026-04-21T10:23:03,033 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2026-04-21T10:23:03,036 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2026-04-21T10:23:03,042 creating build/lib/multiqc/modules/prokka 2026-04-21T10:23:03,044 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2026-04-21T10:23:03,047 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2026-04-21T10:23:03,049 creating build/lib/multiqc/modules/purple 2026-04-21T10:23:03,051 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2026-04-21T10:23:03,053 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2026-04-21T10:23:03,056 creating build/lib/multiqc/modules/pychopper 2026-04-21T10:23:03,057 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2026-04-21T10:23:03,060 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2026-04-21T10:23:03,063 creating build/lib/multiqc/modules/pycoqc 2026-04-21T10:23:03,064 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2026-04-21T10:23:03,067 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2026-04-21T10:23:03,070 creating build/lib/multiqc/modules/qc3C 2026-04-21T10:23:03,071 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2026-04-21T10:23:03,074 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2026-04-21T10:23:03,077 creating build/lib/multiqc/modules/qorts 2026-04-21T10:23:03,079 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2026-04-21T10:23:03,081 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2026-04-21T10:23:03,084 creating build/lib/multiqc/modules/qualimap 2026-04-21T10:23:03,085 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2026-04-21T10:23:03,088 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2026-04-21T10:23:03,091 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2026-04-21T10:23:03,094 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2026-04-21T10:23:03,097 creating build/lib/multiqc/modules/quast 2026-04-21T10:23:03,098 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2026-04-21T10:23:03,100 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2026-04-21T10:23:03,103 creating build/lib/multiqc/modules/ribotish 2026-04-21T10:23:03,105 copying multiqc/modules/ribotish/__init__.py -> build/lib/multiqc/modules/ribotish 2026-04-21T10:23:03,108 copying multiqc/modules/ribotish/ribotish.py -> build/lib/multiqc/modules/ribotish 2026-04-21T10:23:03,111 creating build/lib/multiqc/modules/ribotish/tests 2026-04-21T10:23:03,112 copying multiqc/modules/ribotish/tests/__init__.py -> build/lib/multiqc/modules/ribotish/tests 2026-04-21T10:23:03,115 copying multiqc/modules/ribotish/tests/test_ribotish.py -> build/lib/multiqc/modules/ribotish/tests 2026-04-21T10:23:03,117 creating build/lib/multiqc/modules/ribowaltz 2026-04-21T10:23:03,119 copying multiqc/modules/ribowaltz/__init__.py -> build/lib/multiqc/modules/ribowaltz 2026-04-21T10:23:03,121 copying multiqc/modules/ribowaltz/ribowaltz.py -> build/lib/multiqc/modules/ribowaltz 2026-04-21T10:23:03,124 creating build/lib/multiqc/modules/rna_seqc 2026-04-21T10:23:03,126 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2026-04-21T10:23:03,128 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2026-04-21T10:23:03,131 creating build/lib/multiqc/modules/rockhopper 2026-04-21T10:23:03,132 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2026-04-21T10:23:03,135 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2026-04-21T10:23:03,138 creating build/lib/multiqc/modules/rsem 2026-04-21T10:23:03,139 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2026-04-21T10:23:03,142 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2026-04-21T10:23:03,144 creating build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,146 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,148 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,151 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,154 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,156 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,159 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,162 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,164 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,167 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,170 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,172 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,175 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2026-04-21T10:23:03,177 creating build/lib/multiqc/modules/salmon 2026-04-21T10:23:03,179 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2026-04-21T10:23:03,181 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2026-04-21T10:23:03,184 creating build/lib/multiqc/modules/sambamba 2026-04-21T10:23:03,185 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2026-04-21T10:23:03,187 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2026-04-21T10:23:03,190 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2026-04-21T10:23:03,193 creating build/lib/multiqc/modules/samblaster 2026-04-21T10:23:03,194 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2026-04-21T10:23:03,196 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2026-04-21T10:23:03,199 creating build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,200 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,203 copying multiqc/modules/samtools/ampliconclip.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,206 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,209 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,212 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,215 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,218 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,221 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,224 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2026-04-21T10:23:03,227 creating build/lib/multiqc/modules/samtools/tests 2026-04-21T10:23:03,228 copying multiqc/modules/samtools/tests/__init__.py -> build/lib/multiqc/modules/samtools/tests 2026-04-21T10:23:03,231 copying multiqc/modules/samtools/tests/test_coverage.py -> build/lib/multiqc/modules/samtools/tests 2026-04-21T10:23:03,234 copying multiqc/modules/samtools/tests/test_flagstat.py -> build/lib/multiqc/modules/samtools/tests 2026-04-21T10:23:03,236 creating build/lib/multiqc/modules/sargasso 2026-04-21T10:23:03,238 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2026-04-21T10:23:03,241 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2026-04-21T10:23:03,244 creating build/lib/multiqc/modules/seqera_cli 2026-04-21T10:23:03,245 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2026-04-21T10:23:03,248 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2026-04-21T10:23:03,252 creating build/lib/multiqc/modules/seqfu 2026-04-21T10:23:03,253 copying multiqc/modules/seqfu/__init__.py -> build/lib/multiqc/modules/seqfu 2026-04-21T10:23:03,256 copying multiqc/modules/seqfu/seqfu.py -> build/lib/multiqc/modules/seqfu 2026-04-21T10:23:03,259 copying multiqc/modules/seqfu/stats.py -> build/lib/multiqc/modules/seqfu 2026-04-21T10:23:03,262 creating build/lib/multiqc/modules/seqfu/test 2026-04-21T10:23:03,263 copying multiqc/modules/seqfu/test/test_stats.py -> build/lib/multiqc/modules/seqfu/test 2026-04-21T10:23:03,266 creating build/lib/multiqc/modules/seqkit 2026-04-21T10:23:03,267 copying multiqc/modules/seqkit/__init__.py -> build/lib/multiqc/modules/seqkit 2026-04-21T10:23:03,271 copying multiqc/modules/seqkit/seqkit.py -> build/lib/multiqc/modules/seqkit 2026-04-21T10:23:03,274 copying multiqc/modules/seqkit/stats.py -> build/lib/multiqc/modules/seqkit 2026-04-21T10:23:03,276 creating build/lib/multiqc/modules/seqkit/tests 2026-04-21T10:23:03,277 copying multiqc/modules/seqkit/tests/__init__.py -> build/lib/multiqc/modules/seqkit/tests 2026-04-21T10:23:03,280 copying multiqc/modules/seqkit/tests/test_stats.py -> build/lib/multiqc/modules/seqkit/tests 2026-04-21T10:23:03,282 creating build/lib/multiqc/modules/sequali 2026-04-21T10:23:03,284 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2026-04-21T10:23:03,286 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2026-04-21T10:23:03,293 creating build/lib/multiqc/modules/seqwho 2026-04-21T10:23:03,297 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2026-04-21T10:23:03,300 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2026-04-21T10:23:03,303 creating build/lib/multiqc/modules/seqyclean 2026-04-21T10:23:03,304 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2026-04-21T10:23:03,306 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2026-04-21T10:23:03,309 creating build/lib/multiqc/modules/sexdeterrmine 2026-04-21T10:23:03,310 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2026-04-21T10:23:03,312 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2026-04-21T10:23:03,315 creating build/lib/multiqc/modules/sickle 2026-04-21T10:23:03,316 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2026-04-21T10:23:03,318 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2026-04-21T10:23:03,321 creating build/lib/multiqc/modules/skewer 2026-04-21T10:23:03,322 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2026-04-21T10:23:03,324 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2026-04-21T10:23:03,327 creating build/lib/multiqc/modules/slamdunk 2026-04-21T10:23:03,328 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2026-04-21T10:23:03,330 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2026-04-21T10:23:03,334 creating build/lib/multiqc/modules/snippy 2026-04-21T10:23:03,335 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2026-04-21T10:23:03,337 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2026-04-21T10:23:03,340 creating build/lib/multiqc/modules/snpeff 2026-04-21T10:23:03,341 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2026-04-21T10:23:03,344 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2026-04-21T10:23:03,347 creating build/lib/multiqc/modules/snpsplit 2026-04-21T10:23:03,348 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2026-04-21T10:23:03,350 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2026-04-21T10:23:03,353 creating build/lib/multiqc/modules/somalier 2026-04-21T10:23:03,354 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2026-04-21T10:23:03,357 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2026-04-21T10:23:03,370 creating build/lib/multiqc/modules/sompy 2026-04-21T10:23:03,371 copying multiqc/modules/sompy/__init__.py -> build/lib/multiqc/modules/sompy 2026-04-21T10:23:03,373 copying multiqc/modules/sompy/sompy.py -> build/lib/multiqc/modules/sompy 2026-04-21T10:23:03,376 creating build/lib/multiqc/modules/sortmerna 2026-04-21T10:23:03,377 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2026-04-21T10:23:03,379 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2026-04-21T10:23:03,382 creating build/lib/multiqc/modules/sourmash 2026-04-21T10:23:03,383 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2026-04-21T10:23:03,385 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2026-04-21T10:23:03,387 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2026-04-21T10:23:03,390 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2026-04-21T10:23:03,392 creating build/lib/multiqc/modules/spaceranger 2026-04-21T10:23:03,393 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2026-04-21T10:23:03,395 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2026-04-21T10:23:03,398 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2026-04-21T10:23:03,401 copying multiqc/modules/spaceranger/utils.py -> build/lib/multiqc/modules/spaceranger 2026-04-21T10:23:03,403 creating build/lib/multiqc/modules/stacks 2026-04-21T10:23:03,404 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2026-04-21T10:23:03,406 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2026-04-21T10:23:03,409 creating build/lib/multiqc/modules/star 2026-04-21T10:23:03,410 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2026-04-21T10:23:03,412 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2026-04-21T10:23:03,414 creating build/lib/multiqc/modules/supernova 2026-04-21T10:23:03,415 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2026-04-21T10:23:03,417 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2026-04-21T10:23:03,420 creating build/lib/multiqc/modules/sylphtax 2026-04-21T10:23:03,421 copying multiqc/modules/sylphtax/__init__.py -> build/lib/multiqc/modules/sylphtax 2026-04-21T10:23:03,423 copying multiqc/modules/sylphtax/sylphtax.py -> build/lib/multiqc/modules/sylphtax 2026-04-21T10:23:03,426 creating build/lib/multiqc/modules/telseq 2026-04-21T10:23:03,427 copying multiqc/modules/telseq/__init__.py -> build/lib/multiqc/modules/telseq 2026-04-21T10:23:03,429 copying multiqc/modules/telseq/telseq.py -> build/lib/multiqc/modules/telseq 2026-04-21T10:23:03,431 creating build/lib/multiqc/modules/theta2 2026-04-21T10:23:03,432 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2026-04-21T10:23:03,434 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2026-04-21T10:23:03,436 creating build/lib/multiqc/modules/tophat 2026-04-21T10:23:03,437 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2026-04-21T10:23:03,440 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2026-04-21T10:23:03,442 creating build/lib/multiqc/modules/trimmomatic 2026-04-21T10:23:03,443 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2026-04-21T10:23:03,445 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2026-04-21T10:23:03,448 creating build/lib/multiqc/modules/truvari 2026-04-21T10:23:03,449 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2026-04-21T10:23:03,451 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2026-04-21T10:23:03,453 creating build/lib/multiqc/modules/umicollapse 2026-04-21T10:23:03,454 copying multiqc/modules/umicollapse/__init__.py -> build/lib/multiqc/modules/umicollapse 2026-04-21T10:23:03,456 copying multiqc/modules/umicollapse/umicollapse.py -> build/lib/multiqc/modules/umicollapse 2026-04-21T10:23:03,459 creating build/lib/multiqc/modules/umicollapse/tests 2026-04-21T10:23:03,460 copying multiqc/modules/umicollapse/tests/__init__.py -> build/lib/multiqc/modules/umicollapse/tests 2026-04-21T10:23:03,462 copying multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/lib/multiqc/modules/umicollapse/tests 2026-04-21T10:23:03,464 creating build/lib/multiqc/modules/umitools 2026-04-21T10:23:03,465 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2026-04-21T10:23:03,467 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2026-04-21T10:23:03,469 creating build/lib/multiqc/modules/umitools/tests 2026-04-21T10:23:03,470 copying multiqc/modules/umitools/tests/__init__.py -> build/lib/multiqc/modules/umitools/tests 2026-04-21T10:23:03,472 copying multiqc/modules/umitools/tests/test_umitools.py -> build/lib/multiqc/modules/umitools/tests 2026-04-21T10:23:03,474 creating build/lib/multiqc/modules/varscan2 2026-04-21T10:23:03,475 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2026-04-21T10:23:03,477 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2026-04-21T10:23:03,480 creating build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,481 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,483 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,485 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,487 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,489 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,491 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2026-04-21T10:23:03,493 creating build/lib/multiqc/modules/vep 2026-04-21T10:23:03,494 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2026-04-21T10:23:03,496 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2026-04-21T10:23:03,499 creating build/lib/multiqc/modules/verifybamid 2026-04-21T10:23:03,500 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2026-04-21T10:23:03,502 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2026-04-21T10:23:03,505 creating build/lib/multiqc/modules/vg 2026-04-21T10:23:03,506 copying multiqc/modules/vg/__init__.py -> build/lib/multiqc/modules/vg 2026-04-21T10:23:03,508 copying multiqc/modules/vg/vg.py -> build/lib/multiqc/modules/vg 2026-04-21T10:23:03,511 creating build/lib/multiqc/modules/whatshap 2026-04-21T10:23:03,512 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2026-04-21T10:23:03,514 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2026-04-21T10:23:03,517 creating build/lib/multiqc/modules/xengsort 2026-04-21T10:23:03,518 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2026-04-21T10:23:03,520 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2026-04-21T10:23:03,523 creating build/lib/multiqc/modules/xenium 2026-04-21T10:23:03,524 copying multiqc/modules/xenium/__init__.py -> build/lib/multiqc/modules/xenium 2026-04-21T10:23:03,526 copying multiqc/modules/xenium/xenium.py -> build/lib/multiqc/modules/xenium 2026-04-21T10:23:03,528 creating build/lib/multiqc/modules/xenome 2026-04-21T10:23:03,529 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2026-04-21T10:23:03,532 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2026-04-21T10:23:03,534 creating build/lib/multiqc/plots 2026-04-21T10:23:03,535 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,537 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,540 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,543 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,546 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,549 copying multiqc/plots/plot.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,553 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,555 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,557 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,561 copying multiqc/plots/utils.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,563 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2026-04-21T10:23:03,566 creating build/lib/multiqc/templates 2026-04-21T10:23:03,567 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2026-04-21T10:23:03,568 creating build/lib/multiqc/templates/default 2026-04-21T10:23:03,569 copying multiqc/templates/default/CLAUDE.md -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,572 copying multiqc/templates/default/README.md -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,574 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,576 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,578 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,581 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,583 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,585 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,587 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,589 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,592 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,594 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,596 copying multiqc/templates/default/package-lock.json -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,600 copying multiqc/templates/default/package.json -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,602 copying multiqc/templates/default/theme_toggle.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,604 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,606 copying multiqc/templates/default/vite.config.js -> build/lib/multiqc/templates/default 2026-04-21T10:23:03,608 creating build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,610 copying multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,612 copying multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,614 copying multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,616 copying multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,618 copying multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,620 copying multiqc/templates/default/assets/img/Seqera_logo.svg -> build/lib/multiqc/templates/default/assets/img 2026-04-21T10:23:03,623 creating build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,625 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,627 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,631 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,634 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,637 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,641 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,644 copying multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,664 copying multiqc/templates/default/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:03,667 creating build/lib/multiqc/templates/default/compiled/css 2026-04-21T10:23:03,668 copying multiqc/templates/default/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/default/compiled/css 2026-04-21T10:23:03,676 creating build/lib/multiqc/templates/default/compiled/js 2026-04-21T10:23:03,677 copying multiqc/templates/default/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/default/compiled/js 2026-04-21T10:23:03,682 creating build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,684 copying multiqc/templates/default/src/js/ai-helpers.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,687 copying multiqc/templates/default/src/js/ai.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,691 copying multiqc/templates/default/src/js/color-mode.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,694 copying multiqc/templates/default/src/js/decompress.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,696 copying multiqc/templates/default/src/js/doi.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,698 copying multiqc/templates/default/src/js/flat.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,701 copying multiqc/templates/default/src/js/main-js.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,703 copying multiqc/templates/default/src/js/main.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,705 copying multiqc/templates/default/src/js/multiqc.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,707 copying multiqc/templates/default/src/js/plotting.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,711 copying multiqc/templates/default/src/js/render.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,713 copying multiqc/templates/default/src/js/statuses.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,715 copying multiqc/templates/default/src/js/tables.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,719 copying multiqc/templates/default/src/js/toolbox.js -> build/lib/multiqc/templates/default/src/js 2026-04-21T10:23:03,721 creating build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,722 copying multiqc/templates/default/src/js/plots/bar.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,725 copying multiqc/templates/default/src/js/plots/box.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,728 copying multiqc/templates/default/src/js/plots/heatmap.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,731 copying multiqc/templates/default/src/js/plots/line.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,734 copying multiqc/templates/default/src/js/plots/scatter.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,736 copying multiqc/templates/default/src/js/plots/violin.js -> build/lib/multiqc/templates/default/src/js/plots 2026-04-21T10:23:03,739 creating build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,740 copying multiqc/templates/default/src/js/toolbox/ai.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,743 copying multiqc/templates/default/src/js/toolbox/citations.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,746 copying multiqc/templates/default/src/js/toolbox/constants.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,748 copying multiqc/templates/default/src/js/toolbox/export.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,751 copying multiqc/templates/default/src/js/toolbox/filters.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,754 copying multiqc/templates/default/src/js/toolbox/help.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,756 copying multiqc/templates/default/src/js/toolbox/hide.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,760 copying multiqc/templates/default/src/js/toolbox/highlights.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,763 copying multiqc/templates/default/src/js/toolbox/rename.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,766 copying multiqc/templates/default/src/js/toolbox/save-load.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,770 copying multiqc/templates/default/src/js/toolbox/utils.js -> build/lib/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:03,773 creating build/lib/multiqc/templates/default/src/scss 2026-04-21T10:23:03,774 copying multiqc/templates/default/src/scss/_colors.scss -> build/lib/multiqc/templates/default/src/scss 2026-04-21T10:23:03,777 copying multiqc/templates/default/src/scss/_variables.scss -> build/lib/multiqc/templates/default/src/scss 2026-04-21T10:23:03,780 copying multiqc/templates/default/src/scss/custom.scss -> build/lib/multiqc/templates/default/src/scss 2026-04-21T10:23:03,784 copying multiqc/templates/default/src/scss/main.scss -> build/lib/multiqc/templates/default/src/scss 2026-04-21T10:23:03,787 creating build/lib/multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:03,789 copying multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:03,792 copying multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:03,795 creating build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,796 copying multiqc/templates/default/toolbox/about.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,800 copying multiqc/templates/default/toolbox/ai.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,803 copying multiqc/templates/default/toolbox/buttons.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,806 copying multiqc/templates/default/toolbox/citations.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,809 copying multiqc/templates/default/toolbox/export.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,812 copying multiqc/templates/default/toolbox/hide.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,815 copying multiqc/templates/default/toolbox/highlight.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,818 copying multiqc/templates/default/toolbox/rename.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,821 copying multiqc/templates/default/toolbox/save.html -> build/lib/multiqc/templates/default/toolbox 2026-04-21T10:23:03,823 creating build/lib/multiqc/templates/disco 2026-04-21T10:23:03,825 copying multiqc/templates/disco/README.md -> build/lib/multiqc/templates/disco 2026-04-21T10:23:03,828 copying multiqc/templates/disco/__init__.py -> build/lib/multiqc/templates/disco 2026-04-21T10:23:03,831 copying multiqc/templates/disco/package-lock.json -> build/lib/multiqc/templates/disco 2026-04-21T10:23:03,836 copying multiqc/templates/disco/package.json -> build/lib/multiqc/templates/disco 2026-04-21T10:23:03,839 copying multiqc/templates/disco/vite.config.js -> build/lib/multiqc/templates/disco 2026-04-21T10:23:03,842 creating build/lib/multiqc/templates/disco/compiled/css 2026-04-21T10:23:03,844 copying multiqc/templates/disco/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/disco/compiled/css 2026-04-21T10:23:03,853 creating build/lib/multiqc/templates/disco/compiled/js 2026-04-21T10:23:03,855 copying multiqc/templates/disco/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/disco/compiled/js 2026-04-21T10:23:03,861 creating build/lib/multiqc/templates/disco/src/js 2026-04-21T10:23:03,863 copying multiqc/templates/disco/src/js/main.js -> build/lib/multiqc/templates/disco/src/js 2026-04-21T10:23:03,866 creating build/lib/multiqc/templates/disco/src/scss 2026-04-21T10:23:03,868 copying multiqc/templates/disco/src/scss/_colors.scss -> build/lib/multiqc/templates/disco/src/scss 2026-04-21T10:23:03,871 copying multiqc/templates/disco/src/scss/custom.scss -> build/lib/multiqc/templates/disco/src/scss 2026-04-21T10:23:03,874 copying multiqc/templates/disco/src/scss/main.scss -> build/lib/multiqc/templates/disco/src/scss 2026-04-21T10:23:03,877 creating build/lib/multiqc/templates/gathered 2026-04-21T10:23:03,879 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2026-04-21T10:23:03,882 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2026-04-21T10:23:03,885 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2026-04-21T10:23:03,889 creating build/lib/multiqc/templates/geo 2026-04-21T10:23:03,890 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2026-04-21T10:23:03,893 creating build/lib/multiqc/templates/geo/assets/css 2026-04-21T10:23:03,895 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2026-04-21T10:23:03,900 creating build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,902 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,905 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,909 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,912 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,916 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,920 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,925 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,929 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,933 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,936 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,940 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,943 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2026-04-21T10:23:03,947 creating build/lib/multiqc/templates/original 2026-04-21T10:23:03,948 copying multiqc/templates/original/__init__.py -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,952 copying multiqc/templates/original/base.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,955 copying multiqc/templates/original/content.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,958 copying multiqc/templates/original/foot.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,962 copying multiqc/templates/original/footer.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,966 copying multiqc/templates/original/general_stats.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,969 copying multiqc/templates/original/head.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,972 copying multiqc/templates/original/header.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,975 copying multiqc/templates/original/includes.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,979 copying multiqc/templates/original/nav.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,982 copying multiqc/templates/original/toolbox.html -> build/lib/multiqc/templates/original 2026-04-21T10:23:03,986 creating build/lib/multiqc/templates/original/assets/css 2026-04-21T10:23:03,988 copying multiqc/templates/original/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/original/assets/css 2026-04-21T10:23:03,994 copying multiqc/templates/original/assets/css/default_multiqc.css -> build/lib/multiqc/templates/original/assets/css 2026-04-21T10:23:03,998 copying multiqc/templates/original/assets/css/jquery.toast.css -> build/lib/multiqc/templates/original/assets/css 2026-04-21T10:23:04,002 creating build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,004 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,008 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,014 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,018 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,023 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/original/assets/fonts 2026-04-21T10:23:04,026 creating build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,027 copying multiqc/templates/original/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,030 copying multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,033 copying multiqc/templates/original/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,036 copying multiqc/templates/original/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,039 copying multiqc/templates/original/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,042 copying multiqc/templates/original/assets/img/seqera_logo.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,044 copying multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/original/assets/img 2026-04-21T10:23:04,047 creating build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,049 copying multiqc/templates/original/assets/js/ai-helpers.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,052 copying multiqc/templates/original/assets/js/ai.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,056 copying multiqc/templates/original/assets/js/decompress.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,059 copying multiqc/templates/original/assets/js/flat.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,061 copying multiqc/templates/original/assets/js/multiqc.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,064 copying multiqc/templates/original/assets/js/plotting.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,067 copying multiqc/templates/original/assets/js/render.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,070 copying multiqc/templates/original/assets/js/tables.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,073 copying multiqc/templates/original/assets/js/toolbox.js -> build/lib/multiqc/templates/original/assets/js 2026-04-21T10:23:04,077 creating build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,079 copying multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,082 copying multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,085 copying multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,090 copying multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,093 copying multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,097 copying multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,100 copying multiqc/templates/original/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,106 copying multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,109 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,272 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,330 copying multiqc/templates/original/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:04,334 creating build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,335 copying multiqc/templates/original/assets/js/plots/bar.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,339 copying multiqc/templates/original/assets/js/plots/box.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,342 copying multiqc/templates/original/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,344 copying multiqc/templates/original/assets/js/plots/line.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,347 copying multiqc/templates/original/assets/js/plots/scatter.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,350 copying multiqc/templates/original/assets/js/plots/violin.js -> build/lib/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:04,353 creating build/lib/multiqc/templates/sections 2026-04-21T10:23:04,354 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2026-04-21T10:23:04,356 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2026-04-21T10:23:04,358 creating build/lib/multiqc/templates/simple 2026-04-21T10:23:04,360 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,362 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,364 copying multiqc/templates/simple/footer.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,366 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,369 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,371 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,373 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2026-04-21T10:23:04,376 creating build/lib/multiqc/utils 2026-04-21T10:23:04,377 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,379 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,381 copying multiqc/utils/config_schema.json -> build/lib/multiqc/utils 2026-04-21T10:23:04,385 copying multiqc/utils/config_schema.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,388 copying multiqc/utils/material_icons.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,390 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,392 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,395 copying multiqc/utils/pyaml_env.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,398 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,400 copying multiqc/utils/testing.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,402 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2026-04-21T10:23:04,406 creating build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,407 copying multiqc/utils/material_icons/LICENSE -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,410 copying multiqc/utils/material_icons/manifest.json -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,413 copying multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,416 copying multiqc/utils/material_icons/mdi-alert-circle.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,419 copying multiqc/utils/material_icons/mdi-alert.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,421 copying multiqc/utils/material_icons/mdi-arrow-left.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,424 copying multiqc/utils/material_icons/mdi-arrow-right.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,427 copying multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,430 copying multiqc/utils/material_icons/mdi-bookmark.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,433 copying multiqc/utils/material_icons/mdi-cancel.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,435 copying multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,438 copying multiqc/utils/material_icons/mdi-check-circle.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,441 copying multiqc/utils/material_icons/mdi-check.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,444 copying multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,446 copying multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,449 copying multiqc/utils/material_icons/mdi-chevron-down.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,452 copying multiqc/utils/material_icons/mdi-chevron-left.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,454 copying multiqc/utils/material_icons/mdi-chevron-right.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,457 copying multiqc/utils/material_icons/mdi-chevron-up.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,460 copying multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,463 copying multiqc/utils/material_icons/mdi-clock.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,466 copying multiqc/utils/material_icons/mdi-close.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,469 copying multiqc/utils/material_icons/mdi-cog.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,471 copying multiqc/utils/material_icons/mdi-content-copy.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,474 copying multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,476 copying multiqc/utils/material_icons/mdi-content-save.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,478 copying multiqc/utils/material_icons/mdi-delete.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,480 copying multiqc/utils/material_icons/mdi-download.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,482 copying multiqc/utils/material_icons/mdi-equalizer.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,484 copying multiqc/utils/material_icons/mdi-eye-off.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,486 copying multiqc/utils/material_icons/mdi-eye.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,488 copying multiqc/utils/material_icons/mdi-file-document.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,490 copying multiqc/utils/material_icons/mdi-file.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,493 copying multiqc/utils/material_icons/mdi-filter.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,495 copying multiqc/utils/material_icons/mdi-folder-open.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,497 copying multiqc/utils/material_icons/mdi-folder.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,499 copying multiqc/utils/material_icons/mdi-format-align-left.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,501 copying multiqc/utils/material_icons/mdi-format-bold.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,503 copying multiqc/utils/material_icons/mdi-format-text.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,505 copying multiqc/utils/material_icons/mdi-github.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,508 copying multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,510 copying multiqc/utils/material_icons/mdi-heart.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,512 copying multiqc/utils/material_icons/mdi-help-circle.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,514 copying multiqc/utils/material_icons/mdi-home.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,517 copying multiqc/utils/material_icons/mdi-image.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,519 copying multiqc/utils/material_icons/mdi-information.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,522 copying multiqc/utils/material_icons/mdi-link.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,524 copying multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,526 copying multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,528 copying multiqc/utils/material_icons/mdi-magnify.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,531 copying multiqc/utils/material_icons/mdi-menu.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,533 copying multiqc/utils/material_icons/mdi-minus.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,536 copying multiqc/utils/material_icons/mdi-pencil.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,538 copying multiqc/utils/material_icons/mdi-pin.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,540 copying multiqc/utils/material_icons/mdi-plus.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,542 copying multiqc/utils/material_icons/mdi-printer.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,544 copying multiqc/utils/material_icons/mdi-qrcode.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,546 copying multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,548 copying multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,550 copying multiqc/utils/material_icons/mdi-refresh.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,552 copying multiqc/utils/material_icons/mdi-school.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,554 copying multiqc/utils/material_icons/mdi-share.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,556 copying multiqc/utils/material_icons/mdi-sort.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,559 copying multiqc/utils/material_icons/mdi-star.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,561 copying multiqc/utils/material_icons/mdi-table.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,564 copying multiqc/utils/material_icons/mdi-thumb-down.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,567 copying multiqc/utils/material_icons/mdi-thumb-up.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,569 copying multiqc/utils/material_icons/mdi-view-column.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,572 copying multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,575 copying multiqc/utils/material_icons/mdi-violin.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,577 copying multiqc/utils/material_icons/mdi-warning.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,580 copying multiqc/utils/material_icons/mdi-weather-night.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,583 copying multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,585 copying multiqc/utils/material_icons/mdi-youtube.svg -> build/lib/multiqc/utils/material_icons 2026-04-21T10:23:04,604 installing to build/bdist.linux-armv7l/wheel 2026-04-21T10:23:04,604 running install 2026-04-21T10:23:04,639 running install_lib 2026-04-21T10:23:04,646 creating build/bdist.linux-armv7l/wheel 2026-04-21T10:23:04,649 creating build/bdist.linux-armv7l/wheel/multiqc 2026-04-21T10:23:04,651 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:04,655 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2026-04-21T10:23:04,656 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,658 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,659 copying build/lib/multiqc/utils/config_schema.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,662 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,664 copying build/lib/multiqc/utils/testing.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,665 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,668 copying build/lib/multiqc/utils/material_icons.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,669 copying build/lib/multiqc/utils/config_schema.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,673 copying build/lib/multiqc/utils/pyaml_env.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,676 creating build/bdist.linux-armv7l/wheel/multiqc/utils/material_icons 2026-04-21T10:23:04,677 copying build/lib/multiqc/utils/material_icons/LICENSE -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,679 copying build/lib/multiqc/utils/material_icons/mdi-youtube.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,681 copying build/lib/multiqc/utils/material_icons/mdi-star.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,683 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,684 copying build/lib/multiqc/utils/material_icons/mdi-pin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,686 copying build/lib/multiqc/utils/material_icons/mdi-weather-night.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,687 copying build/lib/multiqc/utils/material_icons/mdi-close.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,689 copying build/lib/multiqc/utils/material_icons/mdi-share.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,691 copying build/lib/multiqc/utils/material_icons/mdi-github.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,693 copying build/lib/multiqc/utils/material_icons/mdi-image.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,694 copying build/lib/multiqc/utils/material_icons/mdi-information.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,696 copying build/lib/multiqc/utils/material_icons/mdi-equalizer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,698 copying build/lib/multiqc/utils/material_icons/manifest.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,700 copying build/lib/multiqc/utils/material_icons/mdi-folder.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,701 copying build/lib/multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,703 copying build/lib/multiqc/utils/material_icons/mdi-format-align-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,705 copying build/lib/multiqc/utils/material_icons/mdi-filter.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,706 copying build/lib/multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,708 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,710 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,711 copying build/lib/multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,713 copying build/lib/multiqc/utils/material_icons/mdi-home.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,715 copying build/lib/multiqc/utils/material_icons/mdi-clock.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,717 copying build/lib/multiqc/utils/material_icons/mdi-folder-open.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,718 copying build/lib/multiqc/utils/material_icons/mdi-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,720 copying build/lib/multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,722 copying build/lib/multiqc/utils/material_icons/mdi-pencil.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,724 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,725 copying build/lib/multiqc/utils/material_icons/mdi-warning.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,727 copying build/lib/multiqc/utils/material_icons/mdi-chevron-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,728 copying build/lib/multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,730 copying build/lib/multiqc/utils/material_icons/mdi-table.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,732 copying build/lib/multiqc/utils/material_icons/mdi-printer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,733 copying build/lib/multiqc/utils/material_icons/mdi-chevron-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,735 copying build/lib/multiqc/utils/material_icons/mdi-cog.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,737 copying build/lib/multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,738 copying build/lib/multiqc/utils/material_icons/mdi-arrow-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,740 copying build/lib/multiqc/utils/material_icons/mdi-menu.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,741 copying build/lib/multiqc/utils/material_icons/mdi-bookmark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,743 copying build/lib/multiqc/utils/material_icons/mdi-delete.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,745 copying build/lib/multiqc/utils/material_icons/mdi-content-copy.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,747 copying build/lib/multiqc/utils/material_icons/mdi-format-text.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,748 copying build/lib/multiqc/utils/material_icons/mdi-eye-off.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,750 copying build/lib/multiqc/utils/material_icons/mdi-file.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,752 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,753 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,755 copying build/lib/multiqc/utils/material_icons/mdi-school.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,757 copying build/lib/multiqc/utils/material_icons/mdi-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,759 copying build/lib/multiqc/utils/material_icons/mdi-help-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,760 copying build/lib/multiqc/utils/material_icons/mdi-check-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,762 copying build/lib/multiqc/utils/material_icons/mdi-thumb-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,764 copying build/lib/multiqc/utils/material_icons/mdi-thumb-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,766 copying build/lib/multiqc/utils/material_icons/mdi-qrcode.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,767 copying build/lib/multiqc/utils/material_icons/mdi-file-document.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,769 copying build/lib/multiqc/utils/material_icons/mdi-check.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,771 copying build/lib/multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,772 copying build/lib/multiqc/utils/material_icons/mdi-chevron-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,774 copying build/lib/multiqc/utils/material_icons/mdi-content-save.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,776 copying build/lib/multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,778 copying build/lib/multiqc/utils/material_icons/mdi-arrow-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,779 copying build/lib/multiqc/utils/material_icons/mdi-cancel.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,781 copying build/lib/multiqc/utils/material_icons/mdi-link.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,782 copying build/lib/multiqc/utils/material_icons/mdi-chevron-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,784 copying build/lib/multiqc/utils/material_icons/mdi-refresh.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,786 copying build/lib/multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,788 copying build/lib/multiqc/utils/material_icons/mdi-eye.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,789 copying build/lib/multiqc/utils/material_icons/mdi-download.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,791 copying build/lib/multiqc/utils/material_icons/mdi-sort.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,793 copying build/lib/multiqc/utils/material_icons/mdi-violin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,794 copying build/lib/multiqc/utils/material_icons/mdi-magnify.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,796 copying build/lib/multiqc/utils/material_icons/mdi-format-bold.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,798 copying build/lib/multiqc/utils/material_icons/mdi-alert.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,800 copying build/lib/multiqc/utils/material_icons/mdi-view-column.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,801 copying build/lib/multiqc/utils/material_icons/mdi-heart.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2026-04-21T10:23:04,803 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,806 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2026-04-21T10:23:04,808 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:04,809 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:04,815 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2026-04-21T10:23:04,817 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2026-04-21T10:23:04,818 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2026-04-21T10:23:04,820 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2026-04-21T10:23:04,823 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2026-04-21T10:23:04,824 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2026-04-21T10:23:04,826 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2026-04-21T10:23:04,829 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2026-04-21T10:23:04,829 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2026-04-21T10:23:04,831 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2026-04-21T10:23:04,834 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cells2stats 2026-04-21T10:23:04,835 copying build/lib/multiqc/modules/cells2stats/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,837 copying build/lib/multiqc/modules/cells2stats/cells2stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,839 copying build/lib/multiqc/modules/cells2stats/cells2stats_tables.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,841 copying build/lib/multiqc/modules/cells2stats/queries.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,843 copying build/lib/multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,845 copying build/lib/multiqc/modules/cells2stats/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2026-04-21T10:23:04,848 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2026-04-21T10:23:04,849 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2026-04-21T10:23:04,851 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2026-04-21T10:23:04,853 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ganon 2026-04-21T10:23:04,854 copying build/lib/multiqc/modules/ganon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2026-04-21T10:23:04,856 copying build/lib/multiqc/modules/ganon/ganon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2026-04-21T10:23:04,859 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2026-04-21T10:23:04,860 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2026-04-21T10:23:04,862 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2026-04-21T10:23:04,865 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2026-04-21T10:23:04,866 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2026-04-21T10:23:04,867 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2026-04-21T10:23:04,870 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2026-04-21T10:23:04,871 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-04-21T10:23:04,873 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-04-21T10:23:04,875 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-04-21T10:23:04,876 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2026-04-21T10:23:04,879 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2026-04-21T10:23:04,880 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,882 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,884 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,886 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,888 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,889 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,891 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,893 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,894 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,896 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,899 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,900 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,902 copying build/lib/multiqc/modules/bbmap/plot_bbsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,904 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,906 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,908 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2026-04-21T10:23:04,910 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2026-04-21T10:23:04,911 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2026-04-21T10:23:04,913 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2026-04-21T10:23:04,916 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2026-04-21T10:23:04,917 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2026-04-21T10:23:04,919 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2026-04-21T10:23:04,921 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2026-04-21T10:23:04,922 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2026-04-21T10:23:04,924 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2026-04-21T10:23:04,928 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2026-04-21T10:23:04,929 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2026-04-21T10:23:04,930 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2026-04-21T10:23:04,934 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2026-04-21T10:23:04,935 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-04-21T10:23:04,936 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-04-21T10:23:04,938 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-04-21T10:23:04,941 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-04-21T10:23:04,943 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2026-04-21T10:23:04,946 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2026-04-21T10:23:04,946 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2026-04-21T10:23:04,948 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2026-04-21T10:23:04,951 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2026-04-21T10:23:04,952 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2026-04-21T10:23:04,954 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2026-04-21T10:23:04,957 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2026-04-21T10:23:04,958 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2026-04-21T10:23:04,960 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2026-04-21T10:23:04,962 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2026-04-21T10:23:04,963 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2026-04-21T10:23:04,965 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2026-04-21T10:23:04,967 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2026-04-21T10:23:04,968 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-04-21T10:23:04,970 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-04-21T10:23:04,972 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-04-21T10:23:04,975 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2026-04-21T10:23:04,977 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2026-04-21T10:23:04,978 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2026-04-21T10:23:04,980 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2026-04-21T10:23:04,983 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2026-04-21T10:23:04,984 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2026-04-21T10:23:04,985 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2026-04-21T10:23:04,988 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sompy 2026-04-21T10:23:04,989 copying build/lib/multiqc/modules/sompy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2026-04-21T10:23:04,991 copying build/lib/multiqc/modules/sompy/sompy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2026-04-21T10:23:04,994 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2026-04-21T10:23:04,995 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2026-04-21T10:23:04,997 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2026-04-21T10:23:05,000 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2026-04-21T10:23:05,002 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,004 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,006 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,008 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,010 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,012 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,014 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,015 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,017 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,019 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,021 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,023 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2026-04-21T10:23:05,025 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2026-04-21T10:23:05,026 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2026-04-21T10:23:05,028 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2026-04-21T10:23:05,031 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2026-04-21T10:23:05,032 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,034 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,036 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,038 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,040 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,042 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2026-04-21T10:23:05,044 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2026-04-21T10:23:05,045 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2026-04-21T10:23:05,047 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2026-04-21T10:23:05,049 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2026-04-21T10:23:05,050 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2026-04-21T10:23:05,052 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2026-04-21T10:23:05,055 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2026-04-21T10:23:05,056 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2026-04-21T10:23:05,058 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2026-04-21T10:23:05,061 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2026-04-21T10:23:05,062 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2026-04-21T10:23:05,064 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2026-04-21T10:23:05,067 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2026-04-21T10:23:05,068 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2026-04-21T10:23:05,069 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2026-04-21T10:23:05,072 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vg 2026-04-21T10:23:05,073 copying build/lib/multiqc/modules/vg/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2026-04-21T10:23:05,075 copying build/lib/multiqc/modules/vg/vg.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2026-04-21T10:23:05,078 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanoq 2026-04-21T10:23:05,079 copying build/lib/multiqc/modules/nanoq/nanoq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2026-04-21T10:23:05,082 copying build/lib/multiqc/modules/nanoq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2026-04-21T10:23:05,084 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribowaltz 2026-04-21T10:23:05,085 copying build/lib/multiqc/modules/ribowaltz/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribowaltz 2026-04-21T10:23:05,087 copying build/lib/multiqc/modules/ribowaltz/ribowaltz.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribowaltz 2026-04-21T10:23:05,090 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules 2026-04-21T10:23:05,092 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2026-04-21T10:23:05,093 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2026-04-21T10:23:05,095 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2026-04-21T10:23:05,097 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2026-04-21T10:23:05,098 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2026-04-21T10:23:05,100 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2026-04-21T10:23:05,103 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2026-04-21T10:23:05,104 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2026-04-21T10:23:05,106 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2026-04-21T10:23:05,109 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2026-04-21T10:23:05,110 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2026-04-21T10:23:05,111 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2026-04-21T10:23:05,114 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2026-04-21T10:23:05,115 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2026-04-21T10:23:05,117 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2026-04-21T10:23:05,120 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2026-04-21T10:23:05,121 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2026-04-21T10:23:05,123 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2026-04-21T10:23:05,126 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2026-04-21T10:23:05,127 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2026-04-21T10:23:05,129 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2026-04-21T10:23:05,131 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2026-04-21T10:23:05,132 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2026-04-21T10:23:05,134 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2026-04-21T10:23:05,137 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2026-04-21T10:23:05,138 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2026-04-21T10:23:05,140 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2026-04-21T10:23:05,143 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit/tests 2026-04-21T10:23:05,144 copying build/lib/multiqc/modules/biscuit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2026-04-21T10:23:05,145 copying build/lib/multiqc/modules/biscuit/tests/test_biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2026-04-21T10:23:05,147 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2026-04-21T10:23:05,148 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2026-04-21T10:23:05,150 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2026-04-21T10:23:05,153 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2026-04-21T10:23:05,154 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2026-04-21T10:23:05,155 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2026-04-21T10:23:05,158 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2026-04-21T10:23:05,159 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2026-04-21T10:23:05,161 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2026-04-21T10:23:05,163 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2026-04-21T10:23:05,164 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2026-04-21T10:23:05,166 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2026-04-21T10:23:05,169 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2026-04-21T10:23:05,170 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2026-04-21T10:23:05,172 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2026-04-21T10:23:05,174 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm 2026-04-21T10:23:05,176 copying build/lib/multiqc/modules/checkm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2026-04-21T10:23:05,177 copying build/lib/multiqc/modules/checkm/checkm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2026-04-21T10:23:05,180 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2026-04-21T10:23:05,181 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2026-04-21T10:23:05,183 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2026-04-21T10:23:05,186 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2026-04-21T10:23:05,187 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2026-04-21T10:23:05,189 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2026-04-21T10:23:05,192 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2026-04-21T10:23:05,193 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,195 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,197 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,199 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,201 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,203 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,205 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,207 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,209 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,211 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,214 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2026-04-21T10:23:05,215 copying build/lib/multiqc/modules/picard/tests/test_picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2026-04-21T10:23:05,217 copying build/lib/multiqc/modules/picard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2026-04-21T10:23:05,218 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,221 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,223 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,226 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,228 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,230 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,232 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,235 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,237 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,239 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,241 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,243 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,245 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,247 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2026-04-21T10:23:05,249 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2026-04-21T10:23:05,250 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2026-04-21T10:23:05,252 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2026-04-21T10:23:05,255 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2026-04-21T10:23:05,256 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2026-04-21T10:23:05,258 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2026-04-21T10:23:05,260 creating build/bdist.linux-armv7l/wheel/multiqc/modules/haplocheck 2026-04-21T10:23:05,261 copying build/lib/multiqc/modules/haplocheck/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2026-04-21T10:23:05,263 copying build/lib/multiqc/modules/haplocheck/haplocheck.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2026-04-21T10:23:05,265 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2026-04-21T10:23:05,266 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2026-04-21T10:23:05,268 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2026-04-21T10:23:05,271 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2026-04-21T10:23:05,272 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2026-04-21T10:23:05,274 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2026-04-21T10:23:05,276 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2026-04-21T10:23:05,277 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/css 2026-04-21T10:23:05,280 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2026-04-21T10:23:05,281 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/js 2026-04-21T10:23:05,284 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:05,285 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:05,287 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:05,288 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:05,290 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2026-04-21T10:23:05,292 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2026-04-21T10:23:05,296 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,297 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,299 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,301 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,302 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,305 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2026-04-21T10:23:05,306 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2026-04-21T10:23:05,307 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc/assets/js 2026-04-21T10:23:05,310 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,312 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,314 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2026-04-21T10:23:05,317 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2026-04-21T10:23:05,318 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2026-04-21T10:23:05,320 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2026-04-21T10:23:05,322 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2026-04-21T10:23:05,323 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2026-04-21T10:23:05,325 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2026-04-21T10:23:05,328 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2026-04-21T10:23:05,329 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-04-21T10:23:05,331 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-04-21T10:23:05,332 copying build/lib/multiqc/modules/fgbio/group_reads_by_umi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-04-21T10:23:05,334 copying build/lib/multiqc/modules/fgbio/error_rate_by_read_position.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2026-04-21T10:23:05,337 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2026-04-21T10:23:05,338 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2026-04-21T10:23:05,340 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2026-04-21T10:23:05,343 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq 2026-04-21T10:23:05,344 copying build/lib/multiqc/modules/bases2fastq/plot_samples.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-04-21T10:23:05,347 copying build/lib/multiqc/modules/bases2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-04-21T10:23:05,349 copying build/lib/multiqc/modules/bases2fastq/plot_project_runs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-04-21T10:23:05,350 copying build/lib/multiqc/modules/bases2fastq/bases2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-04-21T10:23:05,353 copying build/lib/multiqc/modules/bases2fastq/plot_runs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2026-04-21T10:23:05,356 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2026-04-21T10:23:05,357 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2026-04-21T10:23:05,359 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2026-04-21T10:23:05,361 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2026-04-21T10:23:05,362 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-04-21T10:23:05,364 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-04-21T10:23:05,366 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2026-04-21T10:23:05,369 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu 2026-04-21T10:23:05,370 copying build/lib/multiqc/modules/seqfu/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-04-21T10:23:05,372 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu/test 2026-04-21T10:23:05,373 copying build/lib/multiqc/modules/seqfu/test/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu/test 2026-04-21T10:23:05,375 copying build/lib/multiqc/modules/seqfu/seqfu.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-04-21T10:23:05,377 copying build/lib/multiqc/modules/seqfu/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2026-04-21T10:23:05,380 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2026-04-21T10:23:05,381 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2026-04-21T10:23:05,383 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2026-04-21T10:23:05,385 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2026-04-21T10:23:05,386 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2026-04-21T10:23:05,388 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2026-04-21T10:23:05,391 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2026-04-21T10:23:05,392 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2026-04-21T10:23:05,394 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2026-04-21T10:23:05,397 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2026-04-21T10:23:05,398 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2026-04-21T10:23:05,400 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2026-04-21T10:23:05,403 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2026-04-21T10:23:05,404 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2026-04-21T10:23:05,406 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2026-04-21T10:23:05,408 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish 2026-04-21T10:23:05,409 copying build/lib/multiqc/modules/ribotish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2026-04-21T10:23:05,411 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish/tests 2026-04-21T10:23:05,412 copying build/lib/multiqc/modules/ribotish/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2026-04-21T10:23:05,414 copying build/lib/multiqc/modules/ribotish/tests/test_ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2026-04-21T10:23:05,416 copying build/lib/multiqc/modules/ribotish/ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2026-04-21T10:23:05,420 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2026-04-21T10:23:05,421 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2026-04-21T10:23:05,422 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2026-04-21T10:23:05,425 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2026-04-21T10:23:05,426 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2026-04-21T10:23:05,428 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2026-04-21T10:23:05,430 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2026-04-21T10:23:05,431 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2026-04-21T10:23:05,433 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2026-04-21T10:23:05,435 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2026-04-21T10:23:05,436 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2026-04-21T10:23:05,438 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2026-04-21T10:23:05,441 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2026-04-21T10:23:05,442 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2026-04-21T10:23:05,444 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2026-04-21T10:23:05,447 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2026-04-21T10:23:05,448 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-04-21T10:23:05,450 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-04-21T10:23:05,452 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-04-21T10:23:05,454 copying build/lib/multiqc/modules/spaceranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2026-04-21T10:23:05,457 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2026-04-21T10:23:05,458 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2026-04-21T10:23:05,459 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2026-04-21T10:23:05,462 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2026-04-21T10:23:05,463 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2026-04-21T10:23:05,465 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2026-04-21T10:23:05,468 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2026-04-21T10:23:05,469 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2026-04-21T10:23:05,471 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2026-04-21T10:23:05,474 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2026-04-21T10:23:05,475 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2026-04-21T10:23:05,477 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2026-04-21T10:23:05,479 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2026-04-21T10:23:05,480 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2026-04-21T10:23:05,483 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2026-04-21T10:23:05,485 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2026-04-21T10:23:05,486 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-04-21T10:23:05,488 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-04-21T10:23:05,490 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2026-04-21T10:23:05,492 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2026-04-21T10:23:05,493 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2026-04-21T10:23:05,495 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2026-04-21T10:23:05,497 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2026-04-21T10:23:05,498 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2026-04-21T10:23:05,500 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2026-04-21T10:23:05,503 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2026-04-21T10:23:05,504 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2026-04-21T10:23:05,506 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2026-04-21T10:23:05,508 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2026-04-21T10:23:05,509 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2026-04-21T10:23:05,511 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2026-04-21T10:23:05,514 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mgikit 2026-04-21T10:23:05,515 copying build/lib/multiqc/modules/mgikit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2026-04-21T10:23:05,517 copying build/lib/multiqc/modules/mgikit/mgikit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2026-04-21T10:23:05,520 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2026-04-21T10:23:05,521 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,523 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,525 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,526 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,528 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,530 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2026-04-21T10:23:05,532 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2026-04-21T10:23:05,533 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2026-04-21T10:23:05,535 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2026-04-21T10:23:05,538 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2026-04-21T10:23:05,539 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2026-04-21T10:23:05,541 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2026-04-21T10:23:05,543 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2026-04-21T10:23:05,544 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2026-04-21T10:23:05,546 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2026-04-21T10:23:05,548 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2026-04-21T10:23:05,549 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2026-04-21T10:23:05,551 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2026-04-21T10:23:05,554 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2026-04-21T10:23:05,555 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2026-04-21T10:23:05,557 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2026-04-21T10:23:05,560 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2026-04-21T10:23:05,561 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2026-04-21T10:23:05,563 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2026-04-21T10:23:05,566 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2026-04-21T10:23:05,567 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2026-04-21T10:23:05,568 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2026-04-21T10:23:05,571 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2026-04-21T10:23:05,572 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2026-04-21T10:23:05,574 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2026-04-21T10:23:05,577 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2026-04-21T10:23:05,578 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2026-04-21T10:23:05,579 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2026-04-21T10:23:05,582 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2026-04-21T10:23:05,583 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2026-04-21T10:23:05,585 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2026-04-21T10:23:05,589 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2026-04-21T10:23:05,590 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2026-04-21T10:23:05,591 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2026-04-21T10:23:05,594 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2026-04-21T10:23:05,595 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,598 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,600 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,602 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2026-04-21T10:23:05,603 copying build/lib/multiqc/modules/samtools/tests/test_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-04-21T10:23:05,605 copying build/lib/multiqc/modules/samtools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-04-21T10:23:05,607 copying build/lib/multiqc/modules/samtools/tests/test_flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2026-04-21T10:23:05,609 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,611 copying build/lib/multiqc/modules/samtools/ampliconclip.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,613 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,615 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,617 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,619 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2026-04-21T10:23:05,622 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2026-04-21T10:23:05,623 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2026-04-21T10:23:05,625 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2026-04-21T10:23:05,628 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm2 2026-04-21T10:23:05,629 copying build/lib/multiqc/modules/checkm2/checkm2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2026-04-21T10:23:05,631 copying build/lib/multiqc/modules/checkm2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2026-04-21T10:23:05,633 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pairtools 2026-04-21T10:23:05,634 copying build/lib/multiqc/modules/pairtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-04-21T10:23:05,636 copying build/lib/multiqc/modules/pairtools/pairtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-04-21T10:23:05,639 copying build/lib/multiqc/modules/pairtools/params.yml -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-04-21T10:23:05,640 copying build/lib/multiqc/modules/pairtools/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2026-04-21T10:23:05,643 creating build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2026-04-21T10:23:05,644 copying build/lib/multiqc/modules/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-04-21T10:23:05,646 copying build/lib/multiqc/modules/glimpse/err_spl.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-04-21T10:23:05,649 copying build/lib/multiqc/modules/glimpse/glimpse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-04-21T10:23:05,650 copying build/lib/multiqc/modules/glimpse/err_grp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2026-04-21T10:23:05,653 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2026-04-21T10:23:05,654 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2026-04-21T10:23:05,656 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2026-04-21T10:23:05,659 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2026-04-21T10:23:05,660 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2026-04-21T10:23:05,662 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2026-04-21T10:23:05,665 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2026-04-21T10:23:05,666 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2026-04-21T10:23:05,667 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2026-04-21T10:23:05,670 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2026-04-21T10:23:05,671 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2026-04-21T10:23:05,673 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2026-04-21T10:23:05,675 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2026-04-21T10:23:05,676 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2026-04-21T10:23:05,678 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2026-04-21T10:23:05,681 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2026-04-21T10:23:05,682 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2026-04-21T10:23:05,684 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2026-04-21T10:23:05,686 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit 2026-04-21T10:23:05,687 copying build/lib/multiqc/modules/seqkit/seqkit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-04-21T10:23:05,689 copying build/lib/multiqc/modules/seqkit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-04-21T10:23:05,691 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit/tests 2026-04-21T10:23:05,692 copying build/lib/multiqc/modules/seqkit/tests/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2026-04-21T10:23:05,695 copying build/lib/multiqc/modules/seqkit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2026-04-21T10:23:05,696 copying build/lib/multiqc/modules/seqkit/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2026-04-21T10:23:05,699 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2026-04-21T10:23:05,700 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2026-04-21T10:23:05,702 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2026-04-21T10:23:05,705 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:05,706 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:05,708 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2026-04-21T10:23:05,710 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2026-04-21T10:23:05,711 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2026-04-21T10:23:05,713 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2026-04-21T10:23:05,716 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2026-04-21T10:23:05,717 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2026-04-21T10:23:05,719 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2026-04-21T10:23:05,722 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2026-04-21T10:23:05,723 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,726 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,728 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,730 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,731 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,735 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,737 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,739 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2026-04-21T10:23:05,740 copying build/lib/multiqc/modules/dragen/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2026-04-21T10:23:05,742 copying build/lib/multiqc/modules/dragen/tests/test_dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2026-04-21T10:23:05,744 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,746 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,748 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,750 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,753 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,755 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,757 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,758 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,761 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,763 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,765 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2026-04-21T10:23:05,768 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2026-04-21T10:23:05,769 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2026-04-21T10:23:05,771 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2026-04-21T10:23:05,774 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2026-04-21T10:23:05,775 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2026-04-21T10:23:05,777 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2026-04-21T10:23:05,778 copying build/lib/multiqc/modules/ccs/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2026-04-21T10:23:05,780 copying build/lib/multiqc/modules/ccs/tests/test_ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2026-04-21T10:23:05,783 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2026-04-21T10:23:05,785 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsbits 2026-04-21T10:23:05,786 copying build/lib/multiqc/modules/ngsbits/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,788 copying build/lib/multiqc/modules/ngsbits/samplegender.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,790 copying build/lib/multiqc/modules/ngsbits/readqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,792 copying build/lib/multiqc/modules/ngsbits/mappingqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,795 copying build/lib/multiqc/modules/ngsbits/ngsbits.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,796 copying build/lib/multiqc/modules/ngsbits/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2026-04-21T10:23:05,799 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosaicatcher 2026-04-21T10:23:05,800 copying build/lib/multiqc/modules/mosaicatcher/mosaicatcher.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2026-04-21T10:23:05,802 copying build/lib/multiqc/modules/mosaicatcher/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2026-04-21T10:23:05,804 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2026-04-21T10:23:05,805 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2026-04-21T10:23:05,807 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2026-04-21T10:23:05,810 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2026-04-21T10:23:05,811 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2026-04-21T10:23:05,813 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2026-04-21T10:23:05,816 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2026-04-21T10:23:05,817 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2026-04-21T10:23:05,819 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2026-04-21T10:23:05,822 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2026-04-21T10:23:05,823 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2026-04-21T10:23:05,825 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2026-04-21T10:23:05,828 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gtdbtk 2026-04-21T10:23:05,829 copying build/lib/multiqc/modules/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2026-04-21T10:23:05,831 copying build/lib/multiqc/modules/gtdbtk/gtdbtk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2026-04-21T10:23:05,834 creating build/bdist.linux-armv7l/wheel/multiqc/modules/percolator 2026-04-21T10:23:05,835 copying build/lib/multiqc/modules/percolator/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2026-04-21T10:23:05,837 copying build/lib/multiqc/modules/percolator/percolator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2026-04-21T10:23:05,840 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2026-04-21T10:23:05,841 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2026-04-21T10:23:05,843 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2026-04-21T10:23:05,846 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sylphtax 2026-04-21T10:23:05,847 copying build/lib/multiqc/modules/sylphtax/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2026-04-21T10:23:05,849 copying build/lib/multiqc/modules/sylphtax/sylphtax.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2026-04-21T10:23:05,852 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2026-04-21T10:23:05,853 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2026-04-21T10:23:05,855 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2026-04-21T10:23:05,858 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2026-04-21T10:23:05,859 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2026-04-21T10:23:05,861 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2026-04-21T10:23:05,864 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2026-04-21T10:23:05,865 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2026-04-21T10:23:05,866 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2026-04-21T10:23:05,870 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featurecounts 2026-04-21T10:23:05,871 copying build/lib/multiqc/modules/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2026-04-21T10:23:05,873 copying build/lib/multiqc/modules/featurecounts/featurecounts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2026-04-21T10:23:05,876 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2026-04-21T10:23:05,877 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2026-04-21T10:23:05,878 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2026-04-21T10:23:05,881 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2026-04-21T10:23:05,883 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2026-04-21T10:23:05,885 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2026-04-21T10:23:05,888 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2026-04-21T10:23:05,889 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,891 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,893 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,895 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,898 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,900 copying build/lib/multiqc/modules/gatk/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2026-04-21T10:23:05,902 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2026-04-21T10:23:05,903 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2026-04-21T10:23:05,905 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2026-04-21T10:23:05,909 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth/tests 2026-04-21T10:23:05,910 copying build/lib/multiqc/modules/mosdepth/tests/test_gen_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth/tests 2026-04-21T10:23:05,911 copying build/lib/multiqc/modules/mosdepth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth/tests 2026-04-21T10:23:05,914 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2026-04-21T10:23:05,915 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2026-04-21T10:23:05,916 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2026-04-21T10:23:05,919 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2026-04-21T10:23:05,920 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2026-04-21T10:23:05,922 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2026-04-21T10:23:05,925 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2026-04-21T10:23:05,926 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2026-04-21T10:23:05,927 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2026-04-21T10:23:05,930 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2026-04-21T10:23:05,931 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2026-04-21T10:23:05,933 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2026-04-21T10:23:05,936 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2026-04-21T10:23:05,937 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2026-04-21T10:23:05,939 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2026-04-21T10:23:05,941 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2026-04-21T10:23:05,942 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2026-04-21T10:23:05,945 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools/tests 2026-04-21T10:23:05,946 copying build/lib/multiqc/modules/umitools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2026-04-21T10:23:05,947 copying build/lib/multiqc/modules/umitools/tests/test_umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2026-04-21T10:23:05,949 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2026-04-21T10:23:05,952 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ataqv 2026-04-21T10:23:05,953 copying build/lib/multiqc/modules/ataqv/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2026-04-21T10:23:05,955 copying build/lib/multiqc/modules/ataqv/ataqv.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2026-04-21T10:23:05,958 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2026-04-21T10:23:05,959 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-04-21T10:23:05,961 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-04-21T10:23:05,962 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2026-04-21T10:23:05,965 creating build/bdist.linux-armv7l/wheel/multiqc/modules/telseq 2026-04-21T10:23:05,966 copying build/lib/multiqc/modules/telseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2026-04-21T10:23:05,968 copying build/lib/multiqc/modules/telseq/telseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2026-04-21T10:23:05,971 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2026-04-21T10:23:05,972 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2026-04-21T10:23:05,974 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2026-04-21T10:23:05,977 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2026-04-21T10:23:05,977 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2026-04-21T10:23:05,979 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2026-04-21T10:23:05,982 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse 2026-04-21T10:23:05,983 copying build/lib/multiqc/modules/umicollapse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2026-04-21T10:23:05,985 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse/tests 2026-04-21T10:23:05,986 copying build/lib/multiqc/modules/umicollapse/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2026-04-21T10:23:05,988 copying build/lib/multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2026-04-21T10:23:05,989 copying build/lib/multiqc/modules/umicollapse/umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2026-04-21T10:23:05,992 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2026-04-21T10:23:05,993 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-04-21T10:23:05,995 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-04-21T10:23:05,998 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-04-21T10:23:06,000 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2026-04-21T10:23:06,002 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2026-04-21T10:23:06,004 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2026-04-21T10:23:06,006 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2026-04-21T10:23:06,008 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2026-04-21T10:23:06,009 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,011 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,013 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,015 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,017 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,019 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,021 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,023 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,025 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,027 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,030 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2026-04-21T10:23:06,032 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2026-04-21T10:23:06,033 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2026-04-21T10:23:06,035 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2026-04-21T10:23:06,038 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2026-04-21T10:23:06,039 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2026-04-21T10:23:06,040 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2026-04-21T10:23:06,043 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2026-04-21T10:23:06,044 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2026-04-21T10:23:06,046 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2026-04-21T10:23:06,049 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenium 2026-04-21T10:23:06,049 copying build/lib/multiqc/modules/xenium/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2026-04-21T10:23:06,051 copying build/lib/multiqc/modules/xenium/xenium.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2026-04-21T10:23:06,054 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methurator 2026-04-21T10:23:06,055 copying build/lib/multiqc/modules/methurator/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methurator 2026-04-21T10:23:06,057 copying build/lib/multiqc/modules/methurator/methurator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methurator 2026-04-21T10:23:06,060 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2026-04-21T10:23:06,061 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2026-04-21T10:23:06,063 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2026-04-21T10:23:06,066 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2026-04-21T10:23:06,067 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2026-04-21T10:23:06,069 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2026-04-21T10:23:06,072 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2026-04-21T10:23:06,073 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2026-04-21T10:23:06,075 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2026-04-21T10:23:06,077 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2026-04-21T10:23:06,078 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2026-04-21T10:23:06,080 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2026-04-21T10:23:06,083 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2026-04-21T10:23:06,084 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2026-04-21T10:23:06,086 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2026-04-21T10:23:06,089 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2026-04-21T10:23:06,090 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2026-04-21T10:23:06,092 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2026-04-21T10:23:06,095 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2026-04-21T10:23:06,096 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2026-04-21T10:23:06,097 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2026-04-21T10:23:06,100 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2026-04-21T10:23:06,101 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2026-04-21T10:23:06,103 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2026-04-21T10:23:06,106 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2026-04-21T10:23:06,107 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2026-04-21T10:23:06,109 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2026-04-21T10:23:06,111 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2026-04-21T10:23:06,112 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2026-04-21T10:23:06,115 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2026-04-21T10:23:06,117 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc 2026-04-21T10:23:06,118 copying build/lib/multiqc/modules/cellranger_arc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-04-21T10:23:06,120 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:06,121 copying build/lib/multiqc/modules/cellranger_arc/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:06,123 copying build/lib/multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2026-04-21T10:23:06,125 copying build/lib/multiqc/modules/cellranger_arc/cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-04-21T10:23:06,127 copying build/lib/multiqc/modules/cellranger_arc/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2026-04-21T10:23:06,129 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2026-04-21T10:23:06,130 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2026-04-21T10:23:06,133 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2026-04-21T10:23:06,135 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2026-04-21T10:23:06,136 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2026-04-21T10:23:06,138 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2026-04-21T10:23:06,141 creating build/bdist.linux-armv7l/wheel/multiqc/core 2026-04-21T10:23:06,142 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,144 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,146 copying build/lib/multiqc/core/order_modules_and_sections.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,148 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,150 creating build/bdist.linux-armv7l/wheel/multiqc/core/special_case_modules 2026-04-21T10:23:06,151 copying build/lib/multiqc/core/special_case_modules/load_multiqc_data.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-04-21T10:23:06,154 copying build/lib/multiqc/core/special_case_modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-04-21T10:23:06,156 copying build/lib/multiqc/core/special_case_modules/custom_content.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-04-21T10:23:06,159 copying build/lib/multiqc/core/special_case_modules/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2026-04-21T10:23:06,161 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,162 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,165 copying build/lib/multiqc/core/tmp_dir.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,166 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,169 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,171 copying build/lib/multiqc/core/ai.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,174 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,176 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,178 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,180 copying build/lib/multiqc/core/log_and_rich.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,183 copying build/lib/multiqc/core/config_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,185 copying build/lib/multiqc/core/plot_data_store.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2026-04-21T10:23:06,187 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,190 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,193 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,196 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2026-04-21T10:23:06,198 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2026-04-21T10:23:06,199 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo 2026-04-21T10:23:06,201 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2026-04-21T10:23:06,203 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2026-04-21T10:23:06,204 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/css 2026-04-21T10:23:06,209 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2026-04-21T10:23:06,210 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,212 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,214 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,216 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,219 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,221 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,223 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,225 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,227 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,229 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,233 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,235 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2026-04-21T10:23:06,239 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2026-04-21T10:23:06,240 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-04-21T10:23:06,241 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-04-21T10:23:06,243 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2026-04-21T10:23:06,246 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2026-04-21T10:23:06,247 copying build/lib/multiqc/templates/default/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,250 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,252 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,254 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,256 copying build/lib/multiqc/templates/default/CLAUDE.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,258 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,259 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,262 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src 2026-04-21T10:23:06,264 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js 2026-04-21T10:23:06,265 copying build/lib/multiqc/templates/default/src/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,268 copying build/lib/multiqc/templates/default/src/js/doi.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,270 copying build/lib/multiqc/templates/default/src/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,271 copying build/lib/multiqc/templates/default/src/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,274 copying build/lib/multiqc/templates/default/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,276 copying build/lib/multiqc/templates/default/src/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,278 copying build/lib/multiqc/templates/default/src/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,280 copying build/lib/multiqc/templates/default/src/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,282 copying build/lib/multiqc/templates/default/src/js/statuses.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,284 copying build/lib/multiqc/templates/default/src/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,286 copying build/lib/multiqc/templates/default/src/js/main-js.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,288 copying build/lib/multiqc/templates/default/src/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,290 copying build/lib/multiqc/templates/default/src/js/color-mode.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,293 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,294 copying build/lib/multiqc/templates/default/src/js/toolbox/highlights.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,296 copying build/lib/multiqc/templates/default/src/js/toolbox/citations.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,298 copying build/lib/multiqc/templates/default/src/js/toolbox/help.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,300 copying build/lib/multiqc/templates/default/src/js/toolbox/utils.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,302 copying build/lib/multiqc/templates/default/src/js/toolbox/save-load.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,304 copying build/lib/multiqc/templates/default/src/js/toolbox/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,307 copying build/lib/multiqc/templates/default/src/js/toolbox/constants.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,308 copying build/lib/multiqc/templates/default/src/js/toolbox/hide.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,310 copying build/lib/multiqc/templates/default/src/js/toolbox/export.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,313 copying build/lib/multiqc/templates/default/src/js/toolbox/filters.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,315 copying build/lib/multiqc/templates/default/src/js/toolbox/rename.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2026-04-21T10:23:06,317 copying build/lib/multiqc/templates/default/src/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2026-04-21T10:23:06,319 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,320 copying build/lib/multiqc/templates/default/src/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,323 copying build/lib/multiqc/templates/default/src/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,325 copying build/lib/multiqc/templates/default/src/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,327 copying build/lib/multiqc/templates/default/src/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,330 copying build/lib/multiqc/templates/default/src/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,332 copying build/lib/multiqc/templates/default/src/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2026-04-21T10:23:06,335 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss 2026-04-21T10:23:06,336 copying build/lib/multiqc/templates/default/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-04-21T10:23:06,338 copying build/lib/multiqc/templates/default/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-04-21T10:23:06,341 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes 2026-04-21T10:23:06,342 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:06,343 copying build/lib/multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:06,345 copying build/lib/multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2026-04-21T10:23:06,347 copying build/lib/multiqc/templates/default/src/scss/_variables.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-04-21T10:23:06,348 copying build/lib/multiqc/templates/default/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2026-04-21T10:23:06,350 copying build/lib/multiqc/templates/default/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,352 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2026-04-21T10:23:06,353 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2026-04-21T10:23:06,355 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,356 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,359 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,382 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,386 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,388 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,392 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,395 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,397 copying build/lib/multiqc/templates/default/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2026-04-21T10:23:06,400 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2026-04-21T10:23:06,401 copying build/lib/multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,403 copying build/lib/multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,405 copying build/lib/multiqc/templates/default/assets/img/Seqera_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,408 copying build/lib/multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,410 copying build/lib/multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,412 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2026-04-21T10:23:06,414 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,416 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,419 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled 2026-04-21T10:23:06,420 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/css 2026-04-21T10:23:06,422 copying build/lib/multiqc/templates/default/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/css 2026-04-21T10:23:06,428 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/js 2026-04-21T10:23:06,429 copying build/lib/multiqc/templates/default/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/js 2026-04-21T10:23:06,434 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,436 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,438 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,440 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/toolbox 2026-04-21T10:23:06,441 copying build/lib/multiqc/templates/default/toolbox/citations.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,443 copying build/lib/multiqc/templates/default/toolbox/save.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,445 copying build/lib/multiqc/templates/default/toolbox/highlight.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,447 copying build/lib/multiqc/templates/default/toolbox/export.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,449 copying build/lib/multiqc/templates/default/toolbox/buttons.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,451 copying build/lib/multiqc/templates/default/toolbox/hide.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,453 copying build/lib/multiqc/templates/default/toolbox/about.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,455 copying build/lib/multiqc/templates/default/toolbox/ai.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,457 copying build/lib/multiqc/templates/default/toolbox/rename.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2026-04-21T10:23:06,459 copying build/lib/multiqc/templates/default/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,460 copying build/lib/multiqc/templates/default/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,462 copying build/lib/multiqc/templates/default/theme_toggle.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,464 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2026-04-21T10:23:06,466 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates 2026-04-21T10:23:06,468 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original 2026-04-21T10:23:06,469 copying build/lib/multiqc/templates/original/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,471 copying build/lib/multiqc/templates/original/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,473 copying build/lib/multiqc/templates/original/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,475 copying build/lib/multiqc/templates/original/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,477 copying build/lib/multiqc/templates/original/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,480 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets 2026-04-21T10:23:06,481 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/css 2026-04-21T10:23:06,482 copying build/lib/multiqc/templates/original/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-04-21T10:23:06,487 copying build/lib/multiqc/templates/original/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-04-21T10:23:06,489 copying build/lib/multiqc/templates/original/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2026-04-21T10:23:06,492 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js 2026-04-21T10:23:06,493 copying build/lib/multiqc/templates/original/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,496 copying build/lib/multiqc/templates/original/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,497 copying build/lib/multiqc/templates/original/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,500 copying build/lib/multiqc/templates/original/assets/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,502 copying build/lib/multiqc/templates/original/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,504 copying build/lib/multiqc/templates/original/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,508 copying build/lib/multiqc/templates/original/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,510 copying build/lib/multiqc/templates/original/assets/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,513 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,514 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,517 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,519 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,641 copying build/lib/multiqc/templates/original/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,645 copying build/lib/multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,648 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,651 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,654 copying build/lib/multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,656 copying build/lib/multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,659 copying build/lib/multiqc/templates/original/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,662 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2026-04-21T10:23:06,715 copying build/lib/multiqc/templates/original/assets/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2026-04-21T10:23:06,718 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,719 copying build/lib/multiqc/templates/original/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,721 copying build/lib/multiqc/templates/original/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,724 copying build/lib/multiqc/templates/original/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,726 copying build/lib/multiqc/templates/original/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,728 copying build/lib/multiqc/templates/original/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,731 copying build/lib/multiqc/templates/original/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2026-04-21T10:23:06,733 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,735 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,738 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,743 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,745 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,748 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2026-04-21T10:23:06,752 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/img 2026-04-21T10:23:06,753 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,755 copying build/lib/multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,757 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,760 copying build/lib/multiqc/templates/original/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,762 copying build/lib/multiqc/templates/original/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,764 copying build/lib/multiqc/templates/original/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,766 copying build/lib/multiqc/templates/original/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2026-04-21T10:23:06,768 copying build/lib/multiqc/templates/original/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,770 copying build/lib/multiqc/templates/original/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,772 copying build/lib/multiqc/templates/original/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,774 copying build/lib/multiqc/templates/original/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,776 copying build/lib/multiqc/templates/original/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,778 copying build/lib/multiqc/templates/original/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2026-04-21T10:23:06,781 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco 2026-04-21T10:23:06,782 copying build/lib/multiqc/templates/disco/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-04-21T10:23:06,786 copying build/lib/multiqc/templates/disco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-04-21T10:23:06,788 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src 2026-04-21T10:23:06,790 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/js 2026-04-21T10:23:06,791 copying build/lib/multiqc/templates/disco/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/js 2026-04-21T10:23:06,794 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/scss 2026-04-21T10:23:06,795 copying build/lib/multiqc/templates/disco/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-04-21T10:23:06,797 copying build/lib/multiqc/templates/disco/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-04-21T10:23:06,798 copying build/lib/multiqc/templates/disco/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2026-04-21T10:23:06,800 copying build/lib/multiqc/templates/disco/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-04-21T10:23:06,803 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled 2026-04-21T10:23:06,804 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/css 2026-04-21T10:23:06,806 copying build/lib/multiqc/templates/disco/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/css 2026-04-21T10:23:06,812 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/js 2026-04-21T10:23:06,813 copying build/lib/multiqc/templates/disco/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/js 2026-04-21T10:23:06,819 copying build/lib/multiqc/templates/disco/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-04-21T10:23:06,821 copying build/lib/multiqc/templates/disco/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2026-04-21T10:23:06,823 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2026-04-21T10:23:06,824 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2026-04-21T10:23:06,826 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2026-04-21T10:23:06,829 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2026-04-21T10:23:06,830 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,832 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,833 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,835 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,837 copying build/lib/multiqc/templates/simple/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,838 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,840 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2026-04-21T10:23:06,842 copying build/lib/multiqc/validation.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,844 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,846 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,849 copying build/lib/multiqc/types.py -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,851 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,853 copying build/lib/multiqc/py.typed -> build/bdist.linux-armv7l/wheel/./multiqc 2026-04-21T10:23:06,855 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2026-04-21T10:23:06,856 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,858 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,860 copying build/lib/multiqc/plots/plot.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,863 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,866 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,869 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,872 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,874 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,877 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,881 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,883 copying build/lib/multiqc/plots/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2026-04-21T10:23:06,885 running install_egg_info 2026-04-21T10:23:06,890 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/./multiqc-1.34-py3.11.egg-info 2026-04-21T10:23:06,905 running install_scripts 2026-04-21T10:23:06,919 creating build/bdist.linux-armv7l/wheel/multiqc-1.34.dist-info/WHEEL 2026-04-21T10:23:06,922 creating '/tmp/pip-wheel-4itod1k3/.tmp-h_96dfp1/multiqc-1.34-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-21T10:23:06,924 adding 'multiqc/__init__.py' 2026-04-21T10:23:06,926 adding 'multiqc/__main__.py' 2026-04-21T10:23:06,933 adding 'multiqc/base_module.py' 2026-04-21T10:23:06,937 adding 'multiqc/config.py' 2026-04-21T10:23:06,939 adding 'multiqc/config_defaults.yaml' 2026-04-21T10:23:06,942 adding 'multiqc/interactive.py' 2026-04-21T10:23:06,945 adding 'multiqc/multiqc.py' 2026-04-21T10:23:06,947 adding 'multiqc/py.typed' 2026-04-21T10:23:06,953 adding 'multiqc/report.py' 2026-04-21T10:23:06,957 adding 'multiqc/search_patterns.yaml' 2026-04-21T10:23:06,958 adding 'multiqc/types.py' 2026-04-21T10:23:06,960 adding 'multiqc/validation.py' 2026-04-21T10:23:06,962 adding 'multiqc/core/__init__.py' 2026-04-21T10:23:06,967 adding 'multiqc/core/ai.py' 2026-04-21T10:23:06,969 adding 'multiqc/core/config_check.py' 2026-04-21T10:23:06,970 adding 'multiqc/core/exceptions.py' 2026-04-21T10:23:06,972 adding 'multiqc/core/exec_modules.py' 2026-04-21T10:23:06,973 adding 'multiqc/core/file_search.py' 2026-04-21T10:23:06,975 adding 'multiqc/core/log_and_rich.py' 2026-04-21T10:23:06,977 adding 'multiqc/core/order_modules_and_sections.py' 2026-04-21T10:23:06,979 adding 'multiqc/core/plot_data_store.py' 2026-04-21T10:23:06,981 adding 'multiqc/core/plugin_hooks.py' 2026-04-21T10:23:06,982 adding 'multiqc/core/software_versions.py' 2026-04-21T10:23:06,984 adding 'multiqc/core/strict_helpers.py' 2026-04-21T10:23:06,985 adding 'multiqc/core/tmp_dir.py' 2026-04-21T10:23:06,987 adding 'multiqc/core/update_config.py' 2026-04-21T10:23:06,988 adding 'multiqc/core/version_check.py' 2026-04-21T10:23:06,991 adding 'multiqc/core/write_results.py' 2026-04-21T10:23:06,997 adding 'multiqc/core/special_case_modules/custom_content.py' 2026-04-21T10:23:07,000 adding 'multiqc/core/special_case_modules/load_multiqc_data.py' 2026-04-21T10:23:07,002 adding 'multiqc/core/special_case_modules/profile_runtime.py' 2026-04-21T10:23:07,004 adding 'multiqc/core/special_case_modules/software_versions.py' 2026-04-21T10:23:07,008 adding 'multiqc/modules/__init__.py' 2026-04-21T10:23:07,009 adding 'multiqc/modules/adapterremoval/__init__.py' 2026-04-21T10:23:07,011 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2026-04-21T10:23:07,013 adding 'multiqc/modules/afterqc/__init__.py' 2026-04-21T10:23:07,015 adding 'multiqc/modules/afterqc/afterqc.py' 2026-04-21T10:23:07,016 adding 'multiqc/modules/anglerfish/__init__.py' 2026-04-21T10:23:07,018 adding 'multiqc/modules/anglerfish/anglerfish.py' 2026-04-21T10:23:07,020 adding 'multiqc/modules/ataqv/__init__.py' 2026-04-21T10:23:07,022 adding 'multiqc/modules/ataqv/ataqv.py' 2026-04-21T10:23:07,024 adding 'multiqc/modules/bakta/__init__.py' 2026-04-21T10:23:07,026 adding 'multiqc/modules/bakta/bakta.py' 2026-04-21T10:23:07,027 adding 'multiqc/modules/bamdst/__init__.py' 2026-04-21T10:23:07,030 adding 'multiqc/modules/bamdst/bamdst.py' 2026-04-21T10:23:07,032 adding 'multiqc/modules/bamtools/__init__.py' 2026-04-21T10:23:07,033 adding 'multiqc/modules/bamtools/bamtools.py' 2026-04-21T10:23:07,035 adding 'multiqc/modules/bamtools/stats.py' 2026-04-21T10:23:07,036 adding 'multiqc/modules/bases2fastq/__init__.py' 2026-04-21T10:23:07,038 adding 'multiqc/modules/bases2fastq/bases2fastq.py' 2026-04-21T10:23:07,040 adding 'multiqc/modules/bases2fastq/plot_project_runs.py' 2026-04-21T10:23:07,042 adding 'multiqc/modules/bases2fastq/plot_runs.py' 2026-04-21T10:23:07,044 adding 'multiqc/modules/bases2fastq/plot_samples.py' 2026-04-21T10:23:07,046 adding 'multiqc/modules/bbduk/__init__.py' 2026-04-21T10:23:07,047 adding 'multiqc/modules/bbduk/bbduk.py' 2026-04-21T10:23:07,049 adding 'multiqc/modules/bbmap/__init__.py' 2026-04-21T10:23:07,051 adding 'multiqc/modules/bbmap/bbmap.py' 2026-04-21T10:23:07,054 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2026-04-21T10:23:07,055 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2026-04-21T10:23:07,056 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2026-04-21T10:23:07,058 adding 'multiqc/modules/bbmap/plot_bbsplit.py' 2026-04-21T10:23:07,059 adding 'multiqc/modules/bbmap/plot_bhist.py' 2026-04-21T10:23:07,060 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2026-04-21T10:23:07,062 adding 'multiqc/modules/bbmap/plot_covhist.py' 2026-04-21T10:23:07,063 adding 'multiqc/modules/bbmap/plot_idhist.py' 2026-04-21T10:23:07,064 adding 'multiqc/modules/bbmap/plot_ihist.py' 2026-04-21T10:23:07,066 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2026-04-21T10:23:07,067 adding 'multiqc/modules/bbmap/plot_mhist.py' 2026-04-21T10:23:07,068 adding 'multiqc/modules/bbmap/plot_qahist.py' 2026-04-21T10:23:07,069 adding 'multiqc/modules/bbmap/plot_qchist.py' 2026-04-21T10:23:07,071 adding 'multiqc/modules/bbmap/plot_qhist.py' 2026-04-21T10:23:07,072 adding 'multiqc/modules/bcftools/__init__.py' 2026-04-21T10:23:07,073 adding 'multiqc/modules/bcftools/bcftools.py' 2026-04-21T10:23:07,076 adding 'multiqc/modules/bcftools/stats.py' 2026-04-21T10:23:07,077 adding 'multiqc/modules/bcl2fastq/__init__.py' 2026-04-21T10:23:07,080 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2026-04-21T10:23:07,082 adding 'multiqc/modules/bclconvert/__init__.py' 2026-04-21T10:23:07,086 adding 'multiqc/modules/bclconvert/bclconvert.py' 2026-04-21T10:23:07,088 adding 'multiqc/modules/biobambam2/__init__.py' 2026-04-21T10:23:07,090 adding 'multiqc/modules/biobambam2/biobambam2.py' 2026-04-21T10:23:07,091 adding 'multiqc/modules/biobloomtools/__init__.py' 2026-04-21T10:23:07,092 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2026-04-21T10:23:07,094 adding 'multiqc/modules/biscuit/__init__.py' 2026-04-21T10:23:07,098 adding 'multiqc/modules/biscuit/biscuit.py' 2026-04-21T10:23:07,099 adding 'multiqc/modules/biscuit/tests/__init__.py' 2026-04-21T10:23:07,101 adding 'multiqc/modules/biscuit/tests/test_biscuit.py' 2026-04-21T10:23:07,102 adding 'multiqc/modules/bismark/__init__.py' 2026-04-21T10:23:07,105 adding 'multiqc/modules/bismark/bismark.py' 2026-04-21T10:23:07,107 adding 'multiqc/modules/bowtie1/__init__.py' 2026-04-21T10:23:07,108 adding 'multiqc/modules/bowtie1/bowtie1.py' 2026-04-21T10:23:07,110 adding 'multiqc/modules/bowtie2/__init__.py' 2026-04-21T10:23:07,112 adding 'multiqc/modules/bowtie2/bowtie2.py' 2026-04-21T10:23:07,113 adding 'multiqc/modules/busco/__init__.py' 2026-04-21T10:23:07,115 adding 'multiqc/modules/busco/busco.py' 2026-04-21T10:23:07,117 adding 'multiqc/modules/bustools/__init__.py' 2026-04-21T10:23:07,118 adding 'multiqc/modules/bustools/bustools.py' 2026-04-21T10:23:07,120 adding 'multiqc/modules/ccs/__init__.py' 2026-04-21T10:23:07,122 adding 'multiqc/modules/ccs/ccs.py' 2026-04-21T10:23:07,124 adding 'multiqc/modules/ccs/tests/__init__.py' 2026-04-21T10:23:07,125 adding 'multiqc/modules/ccs/tests/test_ccs.py' 2026-04-21T10:23:07,127 adding 'multiqc/modules/cellranger/__init__.py' 2026-04-21T10:23:07,128 adding 'multiqc/modules/cellranger/cellranger.py' 2026-04-21T10:23:07,131 adding 'multiqc/modules/cellranger/count.py' 2026-04-21T10:23:07,132 adding 'multiqc/modules/cellranger/utils.py' 2026-04-21T10:23:07,134 adding 'multiqc/modules/cellranger/vdj.py' 2026-04-21T10:23:07,136 adding 'multiqc/modules/cellranger_arc/__init__.py' 2026-04-21T10:23:07,138 adding 'multiqc/modules/cellranger_arc/cellranger_arc.py' 2026-04-21T10:23:07,139 adding 'multiqc/modules/cellranger_arc/utils.py' 2026-04-21T10:23:07,141 adding 'multiqc/modules/cellranger_arc/tests/__init__.py' 2026-04-21T10:23:07,142 adding 'multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py' 2026-04-21T10:23:07,144 adding 'multiqc/modules/cells2stats/__init__.py' 2026-04-21T10:23:07,145 adding 'multiqc/modules/cells2stats/cells2stats.py' 2026-04-21T10:23:07,147 adding 'multiqc/modules/cells2stats/cells2stats_bar_plots.py' 2026-04-21T10:23:07,149 adding 'multiqc/modules/cells2stats/cells2stats_tables.py' 2026-04-21T10:23:07,151 adding 'multiqc/modules/cells2stats/queries.py' 2026-04-21T10:23:07,152 adding 'multiqc/modules/cells2stats/utils.py' 2026-04-21T10:23:07,154 adding 'multiqc/modules/checkm/__init__.py' 2026-04-21T10:23:07,155 adding 'multiqc/modules/checkm/checkm.py' 2026-04-21T10:23:07,157 adding 'multiqc/modules/checkm2/__init__.py' 2026-04-21T10:23:07,159 adding 'multiqc/modules/checkm2/checkm2.py' 2026-04-21T10:23:07,161 adding 'multiqc/modules/checkqc/__init__.py' 2026-04-21T10:23:07,163 adding 'multiqc/modules/checkqc/checkqc.py' 2026-04-21T10:23:07,165 adding 'multiqc/modules/clipandmerge/__init__.py' 2026-04-21T10:23:07,166 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2026-04-21T10:23:07,168 adding 'multiqc/modules/clusterflow/__init__.py' 2026-04-21T10:23:07,170 adding 'multiqc/modules/clusterflow/clusterflow.py' 2026-04-21T10:23:07,172 adding 'multiqc/modules/conpair/__init__.py' 2026-04-21T10:23:07,173 adding 'multiqc/modules/conpair/conpair.py' 2026-04-21T10:23:07,175 adding 'multiqc/modules/cutadapt/__init__.py' 2026-04-21T10:23:07,178 adding 'multiqc/modules/cutadapt/cutadapt.py' 2026-04-21T10:23:07,179 adding 'multiqc/modules/damageprofiler/__init__.py' 2026-04-21T10:23:07,181 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2026-04-21T10:23:07,183 adding 'multiqc/modules/dedup/__init__.py' 2026-04-21T10:23:07,184 adding 'multiqc/modules/dedup/dedup.py' 2026-04-21T10:23:07,186 adding 'multiqc/modules/deeptools/__init__.py' 2026-04-21T10:23:07,187 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2026-04-21T10:23:07,189 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2026-04-21T10:23:07,190 adding 'multiqc/modules/deeptools/deeptools.py' 2026-04-21T10:23:07,192 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2026-04-21T10:23:07,194 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2026-04-21T10:23:07,195 adding 'multiqc/modules/deeptools/plotCoverage.py' 2026-04-21T10:23:07,197 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2026-04-21T10:23:07,198 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2026-04-21T10:23:07,199 adding 'multiqc/modules/deeptools/plotPCA.py' 2026-04-21T10:23:07,201 adding 'multiqc/modules/deeptools/plotProfile.py' 2026-04-21T10:23:07,203 adding 'multiqc/modules/diamond/__init__.py' 2026-04-21T10:23:07,204 adding 'multiqc/modules/diamond/diamond.py' 2026-04-21T10:23:07,206 adding 'multiqc/modules/disambiguate/__init__.py' 2026-04-21T10:23:07,207 adding 'multiqc/modules/disambiguate/disambiguate.py' 2026-04-21T10:23:07,209 adding 'multiqc/modules/dragen/__init__.py' 2026-04-21T10:23:07,210 adding 'multiqc/modules/dragen/coverage_hist.py' 2026-04-21T10:23:07,219 adding 'multiqc/modules/dragen/coverage_metrics.py' 2026-04-21T10:23:07,221 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2026-04-21T10:23:07,222 adding 'multiqc/modules/dragen/dragen.py' 2026-04-21T10:23:07,224 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2026-04-21T10:23:07,225 adding 'multiqc/modules/dragen/fragment_length.py' 2026-04-21T10:23:07,229 adding 'multiqc/modules/dragen/mapping_metrics.py' 2026-04-21T10:23:07,230 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2026-04-21T10:23:07,232 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2026-04-21T10:23:07,234 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2026-04-21T10:23:07,235 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2026-04-21T10:23:07,237 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2026-04-21T10:23:07,238 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2026-04-21T10:23:07,240 adding 'multiqc/modules/dragen/time_metrics.py' 2026-04-21T10:23:07,241 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2026-04-21T10:23:07,243 adding 'multiqc/modules/dragen/utils.py' 2026-04-21T10:23:07,246 adding 'multiqc/modules/dragen/vc_metrics.py' 2026-04-21T10:23:07,247 adding 'multiqc/modules/dragen/tests/__init__.py' 2026-04-21T10:23:07,249 adding 'multiqc/modules/dragen/tests/test_dragen.py' 2026-04-21T10:23:07,250 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2026-04-21T10:23:07,252 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2026-04-21T10:23:07,254 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2026-04-21T10:23:07,256 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2026-04-21T10:23:07,257 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2026-04-21T10:23:07,259 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2026-04-21T10:23:07,260 adding 'multiqc/modules/dragen_fastqc/util.py' 2026-04-21T10:23:07,263 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2026-04-21T10:23:07,265 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2026-04-21T10:23:07,266 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2026-04-21T10:23:07,268 adding 'multiqc/modules/fastp/__init__.py' 2026-04-21T10:23:07,270 adding 'multiqc/modules/fastp/fastp.py' 2026-04-21T10:23:07,272 adding 'multiqc/modules/fastq_screen/__init__.py' 2026-04-21T10:23:07,274 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2026-04-21T10:23:07,276 adding 'multiqc/modules/fastqc/__init__.py' 2026-04-21T10:23:07,283 adding 'multiqc/modules/fastqc/fastqc.py' 2026-04-21T10:23:07,285 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2026-04-21T10:23:07,288 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2026-04-21T10:23:07,290 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2026-04-21T10:23:07,291 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2026-04-21T10:23:07,292 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2026-04-21T10:23:07,294 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2026-04-21T10:23:07,295 adding 'multiqc/modules/featurecounts/__init__.py' 2026-04-21T10:23:07,297 adding 'multiqc/modules/featurecounts/featurecounts.py' 2026-04-21T10:23:07,299 adding 'multiqc/modules/fgbio/__init__.py' 2026-04-21T10:23:07,300 adding 'multiqc/modules/fgbio/error_rate_by_read_position.py' 2026-04-21T10:23:07,302 adding 'multiqc/modules/fgbio/fgbio.py' 2026-04-21T10:23:07,303 adding 'multiqc/modules/fgbio/group_reads_by_umi.py' 2026-04-21T10:23:07,305 adding 'multiqc/modules/filtlong/__init__.py' 2026-04-21T10:23:07,306 adding 'multiqc/modules/filtlong/filtlong.py' 2026-04-21T10:23:07,308 adding 'multiqc/modules/flash/__init__.py' 2026-04-21T10:23:07,310 adding 'multiqc/modules/flash/flash.py' 2026-04-21T10:23:07,311 adding 'multiqc/modules/flexbar/__init__.py' 2026-04-21T10:23:07,313 adding 'multiqc/modules/flexbar/flexbar.py' 2026-04-21T10:23:07,315 adding 'multiqc/modules/freyja/__init__.py' 2026-04-21T10:23:07,316 adding 'multiqc/modules/freyja/freyja.py' 2026-04-21T10:23:07,318 adding 'multiqc/modules/ganon/__init__.py' 2026-04-21T10:23:07,320 adding 'multiqc/modules/ganon/ganon.py' 2026-04-21T10:23:07,321 adding 'multiqc/modules/gatk/__init__.py' 2026-04-21T10:23:07,324 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2026-04-21T10:23:07,325 adding 'multiqc/modules/gatk/base_recalibrator.py' 2026-04-21T10:23:07,327 adding 'multiqc/modules/gatk/gatk.py' 2026-04-21T10:23:07,328 adding 'multiqc/modules/gatk/utils.py' 2026-04-21T10:23:07,330 adding 'multiqc/modules/gatk/varianteval.py' 2026-04-21T10:23:07,331 adding 'multiqc/modules/gffcompare/__init__.py' 2026-04-21T10:23:07,333 adding 'multiqc/modules/gffcompare/gffcompare.py' 2026-04-21T10:23:07,335 adding 'multiqc/modules/glimpse/__init__.py' 2026-04-21T10:23:07,337 adding 'multiqc/modules/glimpse/err_grp.py' 2026-04-21T10:23:07,338 adding 'multiqc/modules/glimpse/err_spl.py' 2026-04-21T10:23:07,340 adding 'multiqc/modules/glimpse/glimpse.py' 2026-04-21T10:23:07,341 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2026-04-21T10:23:07,343 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2026-04-21T10:23:07,345 adding 'multiqc/modules/gopeaks/__init__.py' 2026-04-21T10:23:07,346 adding 'multiqc/modules/gopeaks/gopeaks.py' 2026-04-21T10:23:07,348 adding 'multiqc/modules/gtdbtk/__init__.py' 2026-04-21T10:23:07,350 adding 'multiqc/modules/gtdbtk/gtdbtk.py' 2026-04-21T10:23:07,352 adding 'multiqc/modules/haplocheck/__init__.py' 2026-04-21T10:23:07,353 adding 'multiqc/modules/haplocheck/haplocheck.py' 2026-04-21T10:23:07,355 adding 'multiqc/modules/happy/__init__.py' 2026-04-21T10:23:07,356 adding 'multiqc/modules/happy/happy.py' 2026-04-21T10:23:07,358 adding 'multiqc/modules/hicexplorer/__init__.py' 2026-04-21T10:23:07,360 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2026-04-21T10:23:07,361 adding 'multiqc/modules/hicpro/__init__.py' 2026-04-21T10:23:07,364 adding 'multiqc/modules/hicpro/hicpro.py' 2026-04-21T10:23:07,365 adding 'multiqc/modules/hicup/__init__.py' 2026-04-21T10:23:07,367 adding 'multiqc/modules/hicup/hicup.py' 2026-04-21T10:23:07,369 adding 'multiqc/modules/hifiasm/__init__.py' 2026-04-21T10:23:07,370 adding 'multiqc/modules/hifiasm/hifiasm.py' 2026-04-21T10:23:07,372 adding 'multiqc/modules/hisat2/__init__.py' 2026-04-21T10:23:07,373 adding 'multiqc/modules/hisat2/hisat2.py' 2026-04-21T10:23:07,375 adding 'multiqc/modules/homer/__init__.py' 2026-04-21T10:23:07,376 adding 'multiqc/modules/homer/findpeaks.py' 2026-04-21T10:23:07,377 adding 'multiqc/modules/homer/homer.py' 2026-04-21T10:23:07,380 adding 'multiqc/modules/homer/tagdirectory.py' 2026-04-21T10:23:07,381 adding 'multiqc/modules/hops/__init__.py' 2026-04-21T10:23:07,383 adding 'multiqc/modules/hops/hops.py' 2026-04-21T10:23:07,385 adding 'multiqc/modules/hostile/__init__.py' 2026-04-21T10:23:07,386 adding 'multiqc/modules/hostile/hostile.py' 2026-04-21T10:23:07,388 adding 'multiqc/modules/htseq/__init__.py' 2026-04-21T10:23:07,389 adding 'multiqc/modules/htseq/htseq.py' 2026-04-21T10:23:07,391 adding 'multiqc/modules/humid/__init__.py' 2026-04-21T10:23:07,392 adding 'multiqc/modules/humid/clusters.py' 2026-04-21T10:23:07,393 adding 'multiqc/modules/humid/counts.py' 2026-04-21T10:23:07,394 adding 'multiqc/modules/humid/humid.py' 2026-04-21T10:23:07,396 adding 'multiqc/modules/humid/neighbours.py' 2026-04-21T10:23:07,397 adding 'multiqc/modules/humid/stats.py' 2026-04-21T10:23:07,399 adding 'multiqc/modules/interop/__init__.py' 2026-04-21T10:23:07,402 adding 'multiqc/modules/interop/interop.py' 2026-04-21T10:23:07,404 adding 'multiqc/modules/isoseq/__init__.py' 2026-04-21T10:23:07,405 adding 'multiqc/modules/isoseq/isoseq.py' 2026-04-21T10:23:07,407 adding 'multiqc/modules/ivar/__init__.py' 2026-04-21T10:23:07,409 adding 'multiqc/modules/ivar/ivar.py' 2026-04-21T10:23:07,410 adding 'multiqc/modules/jcvi/__init__.py' 2026-04-21T10:23:07,412 adding 'multiqc/modules/jcvi/jcvi.py' 2026-04-21T10:23:07,414 adding 'multiqc/modules/jellyfish/__init__.py' 2026-04-21T10:23:07,416 adding 'multiqc/modules/jellyfish/jellyfish.py' 2026-04-21T10:23:07,418 adding 'multiqc/modules/kaiju/__init__.py' 2026-04-21T10:23:07,420 adding 'multiqc/modules/kaiju/kaiju.py' 2026-04-21T10:23:07,421 adding 'multiqc/modules/kallisto/__init__.py' 2026-04-21T10:23:07,423 adding 'multiqc/modules/kallisto/kallisto.py' 2026-04-21T10:23:07,425 adding 'multiqc/modules/kat/__init__.py' 2026-04-21T10:23:07,426 adding 'multiqc/modules/kat/kat.py' 2026-04-21T10:23:07,428 adding 'multiqc/modules/kraken/__init__.py' 2026-04-21T10:23:07,430 adding 'multiqc/modules/kraken/kraken.py' 2026-04-21T10:23:07,432 adding 'multiqc/modules/leehom/__init__.py' 2026-04-21T10:23:07,434 adding 'multiqc/modules/leehom/leehom.py' 2026-04-21T10:23:07,435 adding 'multiqc/modules/librarian/__init__.py' 2026-04-21T10:23:07,437 adding 'multiqc/modules/librarian/librarian.py' 2026-04-21T10:23:07,439 adding 'multiqc/modules/lima/__init__.py' 2026-04-21T10:23:07,441 adding 'multiqc/modules/lima/lima.py' 2026-04-21T10:23:07,443 adding 'multiqc/modules/longranger/__init__.py' 2026-04-21T10:23:07,446 adding 'multiqc/modules/longranger/longranger.py' 2026-04-21T10:23:07,447 adding 'multiqc/modules/macs2/__init__.py' 2026-04-21T10:23:07,449 adding 'multiqc/modules/macs2/macs2.py' 2026-04-21T10:23:07,451 adding 'multiqc/modules/malt/__init__.py' 2026-04-21T10:23:07,452 adding 'multiqc/modules/malt/malt.py' 2026-04-21T10:23:07,454 adding 'multiqc/modules/mapdamage/__init__.py' 2026-04-21T10:23:07,456 adding 'multiqc/modules/mapdamage/mapdamage.py' 2026-04-21T10:23:07,457 adding 'multiqc/modules/megahit/__init__.py' 2026-04-21T10:23:07,459 adding 'multiqc/modules/megahit/megahit.py' 2026-04-21T10:23:07,460 adding 'multiqc/modules/metaphlan/__init__.py' 2026-04-21T10:23:07,462 adding 'multiqc/modules/metaphlan/metaphlan.py' 2026-04-21T10:23:07,464 adding 'multiqc/modules/methurator/__init__.py' 2026-04-21T10:23:07,466 adding 'multiqc/modules/methurator/methurator.py' 2026-04-21T10:23:07,467 adding 'multiqc/modules/methylqa/__init__.py' 2026-04-21T10:23:07,469 adding 'multiqc/modules/methylqa/methylqa.py' 2026-04-21T10:23:07,470 adding 'multiqc/modules/mgikit/__init__.py' 2026-04-21T10:23:07,473 adding 'multiqc/modules/mgikit/mgikit.py' 2026-04-21T10:23:07,474 adding 'multiqc/modules/minionqc/__init__.py' 2026-04-21T10:23:07,476 adding 'multiqc/modules/minionqc/minionqc.py' 2026-04-21T10:23:07,478 adding 'multiqc/modules/mirtop/__init__.py' 2026-04-21T10:23:07,479 adding 'multiqc/modules/mirtop/mirtop.py' 2026-04-21T10:23:07,481 adding 'multiqc/modules/mirtrace/__init__.py' 2026-04-21T10:23:07,483 adding 'multiqc/modules/mirtrace/mirtrace.py' 2026-04-21T10:23:07,484 adding 'multiqc/modules/mosaicatcher/__init__.py' 2026-04-21T10:23:07,486 adding 'multiqc/modules/mosaicatcher/mosaicatcher.py' 2026-04-21T10:23:07,488 adding 'multiqc/modules/mosdepth/__init__.py' 2026-04-21T10:23:07,491 adding 'multiqc/modules/mosdepth/mosdepth.py' 2026-04-21T10:23:07,492 adding 'multiqc/modules/mosdepth/tests/__init__.py' 2026-04-21T10:23:07,493 adding 'multiqc/modules/mosdepth/tests/test_gen_stats.py' 2026-04-21T10:23:07,495 adding 'multiqc/modules/motus/__init__.py' 2026-04-21T10:23:07,497 adding 'multiqc/modules/motus/motus.py' 2026-04-21T10:23:07,498 adding 'multiqc/modules/mtnucratio/__init__.py' 2026-04-21T10:23:07,500 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2026-04-21T10:23:07,502 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2026-04-21T10:23:07,503 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2026-04-21T10:23:07,505 adding 'multiqc/modules/nanoq/__init__.py' 2026-04-21T10:23:07,507 adding 'multiqc/modules/nanoq/nanoq.py' 2026-04-21T10:23:07,509 adding 'multiqc/modules/nanostat/__init__.py' 2026-04-21T10:23:07,511 adding 'multiqc/modules/nanostat/nanostat.py' 2026-04-21T10:23:07,513 adding 'multiqc/modules/nextclade/__init__.py' 2026-04-21T10:23:07,515 adding 'multiqc/modules/nextclade/nextclade.py' 2026-04-21T10:23:07,516 adding 'multiqc/modules/ngsbits/__init__.py' 2026-04-21T10:23:07,518 adding 'multiqc/modules/ngsbits/mappingqc.py' 2026-04-21T10:23:07,519 adding 'multiqc/modules/ngsbits/ngsbits.py' 2026-04-21T10:23:07,521 adding 'multiqc/modules/ngsbits/readqc.py' 2026-04-21T10:23:07,522 adding 'multiqc/modules/ngsbits/samplegender.py' 2026-04-21T10:23:07,523 adding 'multiqc/modules/ngsbits/utils.py' 2026-04-21T10:23:07,525 adding 'multiqc/modules/ngsderive/__init__.py' 2026-04-21T10:23:07,527 adding 'multiqc/modules/ngsderive/ngsderive.py' 2026-04-21T10:23:07,529 adding 'multiqc/modules/nonpareil/__init__.py' 2026-04-21T10:23:07,531 adding 'multiqc/modules/nonpareil/nonpareil.py' 2026-04-21T10:23:07,533 adding 'multiqc/modules/odgi/__init__.py' 2026-04-21T10:23:07,535 adding 'multiqc/modules/odgi/odgi.py' 2026-04-21T10:23:07,537 adding 'multiqc/modules/optitype/__init__.py' 2026-04-21T10:23:07,539 adding 'multiqc/modules/optitype/optitype.py' 2026-04-21T10:23:07,540 adding 'multiqc/modules/pairtools/__init__.py' 2026-04-21T10:23:07,542 adding 'multiqc/modules/pairtools/pairtools.py' 2026-04-21T10:23:07,544 adding 'multiqc/modules/pairtools/params.yml' 2026-04-21T10:23:07,546 adding 'multiqc/modules/pairtools/utils.py' 2026-04-21T10:23:07,548 adding 'multiqc/modules/pangolin/__init__.py' 2026-04-21T10:23:07,549 adding 'multiqc/modules/pangolin/pangolin.py' 2026-04-21T10:23:07,551 adding 'multiqc/modules/pbmarkdup/__init__.py' 2026-04-21T10:23:07,553 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2026-04-21T10:23:07,554 adding 'multiqc/modules/peddy/__init__.py' 2026-04-21T10:23:07,556 adding 'multiqc/modules/peddy/peddy.py' 2026-04-21T10:23:07,558 adding 'multiqc/modules/percolator/__init__.py' 2026-04-21T10:23:07,559 adding 'multiqc/modules/percolator/percolator.py' 2026-04-21T10:23:07,561 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2026-04-21T10:23:07,562 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2026-04-21T10:23:07,564 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2026-04-21T10:23:07,566 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2026-04-21T10:23:07,568 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2026-04-21T10:23:07,570 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2026-04-21T10:23:07,571 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2026-04-21T10:23:07,574 adding 'multiqc/modules/picard/HsMetrics.py' 2026-04-21T10:23:07,575 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2026-04-21T10:23:07,576 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2026-04-21T10:23:07,578 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2026-04-21T10:23:07,580 adding 'multiqc/modules/picard/MarkDuplicates.py' 2026-04-21T10:23:07,581 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2026-04-21T10:23:07,583 adding 'multiqc/modules/picard/OxoGMetrics.py' 2026-04-21T10:23:07,584 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2026-04-21T10:23:07,586 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2026-04-21T10:23:07,587 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2026-04-21T10:23:07,589 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2026-04-21T10:23:07,590 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2026-04-21T10:23:07,592 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2026-04-21T10:23:07,594 adding 'multiqc/modules/picard/ValidateSamFile.py' 2026-04-21T10:23:07,596 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2026-04-21T10:23:07,598 adding 'multiqc/modules/picard/WgsMetrics.py' 2026-04-21T10:23:07,599 adding 'multiqc/modules/picard/__init__.py' 2026-04-21T10:23:07,601 adding 'multiqc/modules/picard/picard.py' 2026-04-21T10:23:07,603 adding 'multiqc/modules/picard/util.py' 2026-04-21T10:23:07,605 adding 'multiqc/modules/picard/tests/__init__.py' 2026-04-21T10:23:07,606 adding 'multiqc/modules/picard/tests/test_picard.py' 2026-04-21T10:23:07,608 adding 'multiqc/modules/porechop/__init__.py' 2026-04-21T10:23:07,609 adding 'multiqc/modules/porechop/porechop.py' 2026-04-21T10:23:07,611 adding 'multiqc/modules/preseq/__init__.py' 2026-04-21T10:23:07,614 adding 'multiqc/modules/preseq/preseq.py' 2026-04-21T10:23:07,616 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2026-04-21T10:23:07,617 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2026-04-21T10:23:07,619 adding 'multiqc/modules/prokka/__init__.py' 2026-04-21T10:23:07,620 adding 'multiqc/modules/prokka/prokka.py' 2026-04-21T10:23:07,622 adding 'multiqc/modules/purple/__init__.py' 2026-04-21T10:23:07,624 adding 'multiqc/modules/purple/purple.py' 2026-04-21T10:23:07,626 adding 'multiqc/modules/pychopper/__init__.py' 2026-04-21T10:23:07,627 adding 'multiqc/modules/pychopper/pychopper.py' 2026-04-21T10:23:07,629 adding 'multiqc/modules/pycoqc/__init__.py' 2026-04-21T10:23:07,631 adding 'multiqc/modules/pycoqc/pycoqc.py' 2026-04-21T10:23:07,633 adding 'multiqc/modules/qc3C/__init__.py' 2026-04-21T10:23:07,637 adding 'multiqc/modules/qc3C/qc3C.py' 2026-04-21T10:23:07,639 adding 'multiqc/modules/qorts/__init__.py' 2026-04-21T10:23:07,641 adding 'multiqc/modules/qorts/qorts.py' 2026-04-21T10:23:07,645 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2026-04-21T10:23:07,647 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2026-04-21T10:23:07,649 adding 'multiqc/modules/qualimap/__init__.py' 2026-04-21T10:23:07,650 adding 'multiqc/modules/qualimap/qualimap.py' 2026-04-21T10:23:07,652 adding 'multiqc/modules/quast/__init__.py' 2026-04-21T10:23:07,654 adding 'multiqc/modules/quast/quast.py' 2026-04-21T10:23:07,656 adding 'multiqc/modules/ribotish/__init__.py' 2026-04-21T10:23:07,658 adding 'multiqc/modules/ribotish/ribotish.py' 2026-04-21T10:23:07,660 adding 'multiqc/modules/ribotish/tests/__init__.py' 2026-04-21T10:23:07,661 adding 'multiqc/modules/ribotish/tests/test_ribotish.py' 2026-04-21T10:23:07,663 adding 'multiqc/modules/ribowaltz/__init__.py' 2026-04-21T10:23:07,665 adding 'multiqc/modules/ribowaltz/ribowaltz.py' 2026-04-21T10:23:07,666 adding 'multiqc/modules/rna_seqc/__init__.py' 2026-04-21T10:23:07,668 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2026-04-21T10:23:07,670 adding 'multiqc/modules/rockhopper/__init__.py' 2026-04-21T10:23:07,672 adding 'multiqc/modules/rockhopper/rockhopper.py' 2026-04-21T10:23:07,673 adding 'multiqc/modules/rsem/__init__.py' 2026-04-21T10:23:07,675 adding 'multiqc/modules/rsem/rsem.py' 2026-04-21T10:23:07,677 adding 'multiqc/modules/rseqc/__init__.py' 2026-04-21T10:23:07,678 adding 'multiqc/modules/rseqc/bam_stat.py' 2026-04-21T10:23:07,680 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2026-04-21T10:23:07,681 adding 'multiqc/modules/rseqc/infer_experiment.py' 2026-04-21T10:23:07,683 adding 'multiqc/modules/rseqc/inner_distance.py' 2026-04-21T10:23:07,684 adding 'multiqc/modules/rseqc/junction_annotation.py' 2026-04-21T10:23:07,685 adding 'multiqc/modules/rseqc/junction_saturation.py' 2026-04-21T10:23:07,687 adding 'multiqc/modules/rseqc/read_distribution.py' 2026-04-21T10:23:07,688 adding 'multiqc/modules/rseqc/read_duplication.py' 2026-04-21T10:23:07,689 adding 'multiqc/modules/rseqc/read_gc.py' 2026-04-21T10:23:07,691 adding 'multiqc/modules/rseqc/rseqc.py' 2026-04-21T10:23:07,692 adding 'multiqc/modules/rseqc/tin.py' 2026-04-21T10:23:07,694 adding 'multiqc/modules/salmon/__init__.py' 2026-04-21T10:23:07,695 adding 'multiqc/modules/salmon/salmon.py' 2026-04-21T10:23:07,697 adding 'multiqc/modules/sambamba/__init__.py' 2026-04-21T10:23:07,699 adding 'multiqc/modules/sambamba/markdup.py' 2026-04-21T10:23:07,700 adding 'multiqc/modules/sambamba/sambamba.py' 2026-04-21T10:23:07,702 adding 'multiqc/modules/samblaster/__init__.py' 2026-04-21T10:23:07,703 adding 'multiqc/modules/samblaster/samblaster.py' 2026-04-21T10:23:07,705 adding 'multiqc/modules/samtools/__init__.py' 2026-04-21T10:23:07,707 adding 'multiqc/modules/samtools/ampliconclip.py' 2026-04-21T10:23:07,709 adding 'multiqc/modules/samtools/coverage.py' 2026-04-21T10:23:07,710 adding 'multiqc/modules/samtools/flagstat.py' 2026-04-21T10:23:07,712 adding 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2026-04-21T10:23:08,533 adding 'multiqc/templates/original/assets/js/packages/jquery-ui.min.js' 2026-04-21T10:23:08,539 adding 'multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js' 2026-04-21T10:23:08,540 adding 'multiqc/templates/original/assets/js/packages/jquery.toast.min.js' 2026-04-21T10:23:08,552 adding 'multiqc/templates/original/assets/js/packages/jszip.min.js' 2026-04-21T10:23:08,556 adding 'multiqc/templates/original/assets/js/packages/pako_inflate.min.js' 2026-04-21T10:23:09,548 adding 'multiqc/templates/original/assets/js/packages/plotly-2.27.0.js' 2026-04-21T10:23:10,031 adding 'multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js' 2026-04-21T10:23:10,062 adding 'multiqc/templates/original/assets/js/packages/showdown.min.js' 2026-04-21T10:23:10,065 adding 'multiqc/templates/original/assets/js/plots/bar.js' 2026-04-21T10:23:10,066 adding 'multiqc/templates/original/assets/js/plots/box.js' 2026-04-21T10:23:10,068 adding 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2026-04-21T10:23:10,170 adding 'multiqc/utils/material_icons/mdi-pin.svg' 2026-04-21T10:23:10,171 adding 'multiqc/utils/material_icons/mdi-plus.svg' 2026-04-21T10:23:10,172 adding 'multiqc/utils/material_icons/mdi-printer.svg' 2026-04-21T10:23:10,174 adding 'multiqc/utils/material_icons/mdi-qrcode.svg' 2026-04-21T10:23:10,175 adding 'multiqc/utils/material_icons/mdi-radiobox-blank.svg' 2026-04-21T10:23:10,176 adding 'multiqc/utils/material_icons/mdi-radiobox-marked.svg' 2026-04-21T10:23:10,177 adding 'multiqc/utils/material_icons/mdi-refresh.svg' 2026-04-21T10:23:10,178 adding 'multiqc/utils/material_icons/mdi-school.svg' 2026-04-21T10:23:10,179 adding 'multiqc/utils/material_icons/mdi-share.svg' 2026-04-21T10:23:10,181 adding 'multiqc/utils/material_icons/mdi-sort.svg' 2026-04-21T10:23:10,182 adding 'multiqc/utils/material_icons/mdi-star.svg' 2026-04-21T10:23:10,183 adding 'multiqc/utils/material_icons/mdi-table.svg' 2026-04-21T10:23:10,184 adding 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'multiqc-1.34.dist-info/top_level.txt' 2026-04-21T10:23:10,226 adding 'multiqc-1.34.dist-info/RECORD' 2026-04-21T10:23:10,299 removing build/bdist.linux-armv7l/wheel 2026-04-21T10:23:10,683 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2026-04-21T10:23:10,807 Created wheel for multiqc: filename=multiqc-1.34-py3-none-any.whl size=5683457 sha256=8589e6a9b7b9eede91e649e20471f04cab7bbbd9134d644b22c185a8bd8ac113 2026-04-21T10:23:10,808 Stored in directory: /tmp/pip-ephem-wheel-cache-_vah7zgd/wheels/7d/9d/47/eebfe071e8c6dfd596cc07a71ef65813a0821c27080c9d84fd 2026-04-21T10:23:10,867 Successfully built multiqc 2026-04-21T10:23:11,025 Removed build tracker: '/tmp/pip-build-tracker-kr2hummn'