2026-04-22T02:16:25,081 Created temporary directory: /tmp/pip-ephem-wheel-cache-l0nfj9kh 2026-04-22T02:16:25,083 Created temporary directory: /tmp/pip-build-tracker-6ote6i_e 2026-04-22T02:16:25,084 Initialized build tracking at /tmp/pip-build-tracker-6ote6i_e 2026-04-22T02:16:25,084 Created build tracker: /tmp/pip-build-tracker-6ote6i_e 2026-04-22T02:16:25,085 Entered build tracker: /tmp/pip-build-tracker-6ote6i_e 2026-04-22T02:16:25,086 Created temporary directory: /tmp/pip-wheel-ydqcw0_g 2026-04-22T02:16:25,088 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-22T02:16:25,091 Created temporary directory: /tmp/pip-ephem-wheel-cache-z52psp6x 2026-04-22T02:16:25,117 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-22T02:16:25,120 2 location(s) to search for versions of varcode: 2026-04-22T02:16:25,120 * https://pypi.org/simple/varcode/ 2026-04-22T02:16:25,120 * https://www.piwheels.org/simple/varcode/ 2026-04-22T02:16:25,121 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-04-22T02:16:25,122 Getting page https://pypi.org/simple/varcode/ 2026-04-22T02:16:25,123 Found index url https://pypi.org/simple 2026-04-22T02:16:25,276 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-04-22T02:16:25,303 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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https://files.pythonhosted.org/packages/3a/89/0feee03c580aab4b3438091f4a806fac0059944b27ca882e98f0715603b0/varcode-0.3.16.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.16 2026-04-22T02:16:25,318 Found link https://files.pythonhosted.org/packages/9b/a9/7c93b93ef5af20931fa66db32b43f29b4c157eff26cdfb32f5b2459af307/varcode-0.3.17.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.17 2026-04-22T02:16:25,318 Found link https://files.pythonhosted.org/packages/ba/f3/a57fb7724823b7948ba60239653070a18bf8454baddb11662bd5aa5c3fea/varcode-0.3.18.tar.gz (from https://pypi.org/simple/varcode/), version: 0.3.18 2026-04-22T02:16:25,319 Found link https://files.pythonhosted.org/packages/81/6c/a41f945c1e4bf0e80e459d9ddfa9b04e7c608776f3bf19748875b7ab22a2/varcode-0.4.0.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.0 2026-04-22T02:16:25,320 Found link https://files.pythonhosted.org/packages/42/5e/5509edf379fcdd7c55e456ee09ab51f4c60597206ddfbc7b449ab0eae017/varcode-0.4.1.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.1 2026-04-22T02:16:25,320 Found link https://files.pythonhosted.org/packages/12/88/d44d94f8e8044c0ca386ade6013dd77dcddf910364f2d1e9e63028153a47/varcode-0.4.2.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.2 2026-04-22T02:16:25,321 Found link https://files.pythonhosted.org/packages/d5/a8/b158b095d6531940d069b57ecfa556fdcf22076a57139eba31fc201c3cb1/varcode-0.4.3.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.3 2026-04-22T02:16:25,322 Found link https://files.pythonhosted.org/packages/59/73/9f22a7926154b25770e633ed75ff1a03a3abaeeeea0d9bbd62751fc78858/varcode-0.4.4.tar.gz (from https://pypi.org/simple/varcode/), version: 0.4.4 2026-04-22T02:16:25,322 Found link 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https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,674 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.11-py3-none-any.whl#sha256=d5ea4be6643a0aac73a4cece9bf41ce2fa61e5ff3750cdfe10c647e4506aa8a5 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,674 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.10-py3-none-any.whl#sha256=b97508619b54fa26ec11fd5b846720224ee44c5876374287f6e92d8d5ef3721d (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,675 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.9-py3-none-any.whl#sha256=fb33a28dcc4e647a1ad44e50b0151f50667a3ca53b3c0bdbee54381b031584b8 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,676 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.8-py3-none-any.whl#sha256=6deb536382523a15405d9ff5716ac82debc2c1ef24082650d684c2fa2b1d875b (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,676 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.7-py3-none-any.whl#sha256=78b3c18e40746b8b3f06db26afc77918dda6f0e8e4d893e7848ff13e5697a286 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,677 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.6-py3-none-any.whl#sha256=8fc2ff6dcc860db5b93a55bd03af3f79a490b199c2c1789e4da9d3c9dbd7360c (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,677 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.5-py3-none-any.whl#sha256=1d9d9233a86ce65776aaa1b783cf79b67e84da71eb370272fd8bdd6d9b0db585 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,678 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.4-py3-none-any.whl#sha256=06f2c6d54c36a8487cb1011893450f9f822b14b820b0a033773eae1740a22b97 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,678 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.3-py3-none-any.whl#sha256=dfae9cb2c80d772493a6163385aee2e0f0813703d53931f6c9333b7f371cde4a (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,678 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.2-py3-none-any.whl#sha256=11f36bcb9a14d27708448ce616902da2d8a77f945df9343b9be8b331e759dbfa (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,679 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.3.1-py3-none-any.whl#sha256=43e24cb90380c68b1ba50d53c1e2c4090332b4f2a58e12958b42af9970434ff2 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,680 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.2.1-py3-none-any.whl#sha256=e3a333b0cbb7eb9984b729c7dbbbfa4c0a189e08dfe53283c7222df3a2dfbf0a (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,680 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.1.1-py3-none-any.whl#sha256=470c8901b71faadb23ff67c9898089ab9d0b3b4a68a4a7f9af50fa9a0d11768a (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,681 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.1.0-py3-none-any.whl#sha256=83e13356265d60cee860a4bb72ff4f8aa8f1d5d0c677fec518a7c08bb89ba160 (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,681 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.0.3-py3-none-any.whl#sha256=35c3f383fc6bd302dc0dc00805dc27514906cbfa0f6ddd661635024b81cc3bed (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,682 Skipping link: No binaries permitted for varcode: https://archive1.piwheels.org/simple/varcode/varcode-0.0.2-py3-none-any.whl#sha256=75b17e9aad29be21e31e6e6eb7e670be2cb487b645169e1df93fb43d6bbef03f (from https://www.piwheels.org/simple/varcode/) 2026-04-22T02:16:25,682 Skipping link: not a file: https://www.piwheels.org/simple/varcode/ 2026-04-22T02:16:25,683 Skipping link: not a file: https://pypi.org/simple/varcode/ 2026-04-22T02:16:25,717 Given no hashes to check 1 links for project 'varcode': discarding no candidates 2026-04-22T02:16:25,737 Collecting varcode==4.16.0 2026-04-22T02:16:25,739 Created temporary directory: /tmp/pip-unpack-ui0y97l6 2026-04-22T02:16:25,967 Downloading varcode-4.16.0.tar.gz (241 kB) 2026-04-22T02:16:26,324 Added varcode==4.16.0 from https://files.pythonhosted.org/packages/4b/58/aeaafed6bb15efd9c539ecf9065a6f377b1374ab78e888b44e7509cb62fb/varcode-4.16.0.tar.gz to build tracker '/tmp/pip-build-tracker-6ote6i_e' 2026-04-22T02:16:26,328 Created temporary directory: /tmp/pip-build-env-4fnen67j 2026-04-22T02:16:26,333 Installing build dependencies: started 2026-04-22T02:16:26,334 Running command pip subprocess to install build dependencies 2026-04-22T02:16:27,472 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-22T02:16:27,887 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-22T02:16:27,910 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-22T02:16:29,663 Collecting setuptools>=64 2026-04-22T02:16:29,738 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-22T02:16:32,707 Installing collected packages: setuptools 2026-04-22T02:16:35,766 Successfully installed setuptools-82.0.1 2026-04-22T02:16:36,033 Installing build dependencies: finished with status 'done' 2026-04-22T02:16:36,042 Getting requirements to build wheel: started 2026-04-22T02:16:36,043 Running command Getting requirements to build wheel 2026-04-22T02:16:36,723 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:36,723 !! 2026-04-22T02:16:36,724 ******************************************************************************** 2026-04-22T02:16:36,725 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:36,726 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:36,727 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:36,728 ******************************************************************************** 2026-04-22T02:16:36,729 !! 2026-04-22T02:16:36,729 dist._finalize_license_expression() 2026-04-22T02:16:36,730 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:36,730 !! 2026-04-22T02:16:36,732 ******************************************************************************** 2026-04-22T02:16:36,732 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:36,733 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:36,734 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:36,735 ******************************************************************************** 2026-04-22T02:16:36,736 !! 2026-04-22T02:16:36,737 self._finalize_license_expression() 2026-04-22T02:16:36,737 running egg_info 2026-04-22T02:16:36,742 writing varcode.egg-info/PKG-INFO 2026-04-22T02:16:36,746 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-22T02:16:36,748 writing entry points to varcode.egg-info/entry_points.txt 2026-04-22T02:16:36,750 writing requirements to varcode.egg-info/requires.txt 2026-04-22T02:16:36,751 writing top-level names to varcode.egg-info/top_level.txt 2026-04-22T02:16:36,777 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:36,784 reading manifest template 'MANIFEST.in' 2026-04-22T02:16:36,785 adding license file 'LICENSE' 2026-04-22T02:16:36,792 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:36,889 Getting requirements to build wheel: finished with status 'done' 2026-04-22T02:16:36,893 Created temporary directory: /tmp/pip-modern-metadata-rf8xr3e_ 2026-04-22T02:16:36,895 Preparing metadata (pyproject.toml): started 2026-04-22T02:16:36,896 Running command Preparing metadata (pyproject.toml) 2026-04-22T02:16:37,542 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:37,543 !! 2026-04-22T02:16:37,544 ******************************************************************************** 2026-04-22T02:16:37,544 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:37,545 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:37,546 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:37,547 ******************************************************************************** 2026-04-22T02:16:37,548 !! 2026-04-22T02:16:37,548 dist._finalize_license_expression() 2026-04-22T02:16:37,549 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:37,550 !! 2026-04-22T02:16:37,551 ******************************************************************************** 2026-04-22T02:16:37,552 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:37,553 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:37,555 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:37,555 ******************************************************************************** 2026-04-22T02:16:37,556 !! 2026-04-22T02:16:37,557 self._finalize_license_expression() 2026-04-22T02:16:37,558 running dist_info 2026-04-22T02:16:37,567 creating /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info 2026-04-22T02:16:37,568 writing /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/PKG-INFO 2026-04-22T02:16:37,572 writing dependency_links to /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/dependency_links.txt 2026-04-22T02:16:37,575 writing entry points to /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/entry_points.txt 2026-04-22T02:16:37,577 writing requirements to /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/requires.txt 2026-04-22T02:16:37,578 writing top-level names to /tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/top_level.txt 2026-04-22T02:16:37,580 writing manifest file '/tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:37,604 reading manifest file '/tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:37,606 reading manifest template 'MANIFEST.in' 2026-04-22T02:16:37,607 adding license file 'LICENSE' 2026-04-22T02:16:37,612 writing manifest file '/tmp/pip-modern-metadata-rf8xr3e_/varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:37,614 creating '/tmp/pip-modern-metadata-rf8xr3e_/varcode-4.16.0.dist-info' 2026-04-22T02:16:37,739 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-22T02:16:37,744 Source in /tmp/pip-wheel-ydqcw0_g/varcode_3baf69aba7974d1d81a82c14225d965b has version 4.16.0, which satisfies requirement varcode==4.16.0 from https://files.pythonhosted.org/packages/4b/58/aeaafed6bb15efd9c539ecf9065a6f377b1374ab78e888b44e7509cb62fb/varcode-4.16.0.tar.gz 2026-04-22T02:16:37,745 Removed varcode==4.16.0 from https://files.pythonhosted.org/packages/4b/58/aeaafed6bb15efd9c539ecf9065a6f377b1374ab78e888b44e7509cb62fb/varcode-4.16.0.tar.gz from build tracker '/tmp/pip-build-tracker-6ote6i_e' 2026-04-22T02:16:37,751 Created temporary directory: /tmp/pip-unpack-_nveoyxt 2026-04-22T02:16:37,752 Building wheels for collected packages: varcode 2026-04-22T02:16:37,756 Created temporary directory: /tmp/pip-wheel-nghzx9q5 2026-04-22T02:16:37,756 Destination directory: /tmp/pip-wheel-nghzx9q5 2026-04-22T02:16:37,759 Building wheel for varcode (pyproject.toml): started 2026-04-22T02:16:37,760 Running command Building wheel for varcode (pyproject.toml) 2026-04-22T02:16:38,398 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:38,398 !! 2026-04-22T02:16:38,400 ******************************************************************************** 2026-04-22T02:16:38,400 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:38,401 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:38,402 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:38,403 ******************************************************************************** 2026-04-22T02:16:38,404 !! 2026-04-22T02:16:38,404 dist._finalize_license_expression() 2026-04-22T02:16:38,405 /tmp/pip-build-env-4fnen67j/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-22T02:16:38,405 !! 2026-04-22T02:16:38,406 ******************************************************************************** 2026-04-22T02:16:38,407 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-22T02:16:38,408 License :: OSI Approved :: Apache Software License 2026-04-22T02:16:38,409 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-22T02:16:38,410 ******************************************************************************** 2026-04-22T02:16:38,422 !! 2026-04-22T02:16:38,423 self._finalize_license_expression() 2026-04-22T02:16:38,423 running bdist_wheel 2026-04-22T02:16:38,432 running build 2026-04-22T02:16:38,433 running build_py 2026-04-22T02:16:38,439 creating build/lib/varcode 2026-04-22T02:16:38,442 copying varcode/vcf_output.py -> build/lib/varcode 2026-04-22T02:16:38,444 copying varcode/reference.py -> build/lib/varcode 2026-04-22T02:16:38,447 copying varcode/csv_helpers.py -> build/lib/varcode 2026-04-22T02:16:38,449 copying varcode/__init__.py -> build/lib/varcode 2026-04-22T02:16:38,451 copying varcode/cryptic_exons.py -> build/lib/varcode 2026-04-22T02:16:38,454 copying varcode/structural_variant.py -> build/lib/varcode 2026-04-22T02:16:38,456 copying varcode/vcf.py -> build/lib/varcode 2026-04-22T02:16:38,459 copying varcode/variant_collection.py -> build/lib/varcode 2026-04-22T02:16:38,461 copying varcode/util.py -> build/lib/varcode 2026-04-22T02:16:38,463 copying varcode/version.py -> build/lib/varcode 2026-04-22T02:16:38,465 copying varcode/string_helpers.py -> build/lib/varcode 2026-04-22T02:16:38,467 copying varcode/outcomes.py -> build/lib/varcode 2026-04-22T02:16:38,469 copying varcode/splice_outcomes.py -> build/lib/varcode 2026-04-22T02:16:38,472 copying varcode/common.py -> build/lib/varcode 2026-04-22T02:16:38,474 copying varcode/errors.py -> build/lib/varcode 2026-04-22T02:16:38,476 copying varcode/sv_allele_parser.py -> build/lib/varcode 2026-04-22T02:16:38,479 copying varcode/phasing.py -> build/lib/varcode 2026-04-22T02:16:38,481 copying varcode/genotype.py -> build/lib/varcode 2026-04-22T02:16:38,483 copying varcode/maf.py -> build/lib/varcode 2026-04-22T02:16:38,485 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-04-22T02:16:38,487 copying varcode/nucleotides.py -> build/lib/varcode 2026-04-22T02:16:38,489 copying varcode/mutant_transcript.py -> build/lib/varcode 2026-04-22T02:16:38,491 copying varcode/variant.py -> build/lib/varcode 2026-04-22T02:16:38,494 creating build/lib/varcode/cli 2026-04-22T02:16:38,495 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-04-22T02:16:38,497 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-04-22T02:16:38,499 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-04-22T02:16:38,501 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-04-22T02:16:38,502 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-04-22T02:16:38,505 creating build/lib/varcode/annotators 2026-04-22T02:16:38,506 copying varcode/annotators/__init__.py -> build/lib/varcode/annotators 2026-04-22T02:16:38,508 copying varcode/annotators/structural_variant.py -> build/lib/varcode/annotators 2026-04-22T02:16:38,511 copying varcode/annotators/protein_diff.py -> build/lib/varcode/annotators 2026-04-22T02:16:38,513 copying varcode/annotators/registry.py -> build/lib/varcode/annotators 2026-04-22T02:16:38,515 copying varcode/annotators/fast.py -> build/lib/varcode/annotators 2026-04-22T02:16:38,518 creating build/lib/varcode/effects 2026-04-22T02:16:38,519 copying varcode/effects/classify.py -> build/lib/varcode/effects 2026-04-22T02:16:38,521 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-04-22T02:16:38,524 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-04-22T02:16:38,526 copying varcode/effects/fast_path.py -> build/lib/varcode/effects 2026-04-22T02:16:38,528 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-04-22T02:16:38,530 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-04-22T02:16:38,532 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-04-22T02:16:38,535 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-04-22T02:16:38,537 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-04-22T02:16:38,539 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-04-22T02:16:38,541 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-04-22T02:16:38,543 copying varcode/effects/codon_tables.py -> build/lib/varcode/effects 2026-04-22T02:16:38,545 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-04-22T02:16:38,548 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-04-22T02:16:38,550 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-04-22T02:16:38,552 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-04-22T02:16:38,555 running egg_info 2026-04-22T02:16:38,564 writing varcode.egg-info/PKG-INFO 2026-04-22T02:16:38,567 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-04-22T02:16:38,569 writing entry points to varcode.egg-info/entry_points.txt 2026-04-22T02:16:38,570 writing requirements to varcode.egg-info/requires.txt 2026-04-22T02:16:38,571 writing top-level names to varcode.egg-info/top_level.txt 2026-04-22T02:16:38,586 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:38,593 reading manifest template 'MANIFEST.in' 2026-04-22T02:16:38,594 adding license file 'LICENSE' 2026-04-22T02:16:38,602 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-04-22T02:16:38,607 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-04-22T02:16:38,621 installing to build/bdist.linux-armv7l/wheel 2026-04-22T02:16:38,622 running install 2026-04-22T02:16:38,646 running install_lib 2026-04-22T02:16:38,652 creating build/bdist.linux-armv7l/wheel 2026-04-22T02:16:38,654 creating build/bdist.linux-armv7l/wheel/varcode 2026-04-22T02:16:38,655 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,657 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,660 copying build/lib/varcode/csv_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,662 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,664 copying build/lib/varcode/cryptic_exons.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,666 copying build/lib/varcode/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,668 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,671 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,673 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,675 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,677 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-04-22T02:16:38,678 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,680 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,683 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,685 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,687 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,689 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-04-22T02:16:38,691 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,693 copying build/lib/varcode/outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,695 copying build/lib/varcode/splice_outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,699 creating build/bdist.linux-armv7l/wheel/varcode/annotators 2026-04-22T02:16:38,700 copying build/lib/varcode/annotators/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-22T02:16:38,702 copying build/lib/varcode/annotators/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-22T02:16:38,704 copying build/lib/varcode/annotators/protein_diff.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-22T02:16:38,707 copying build/lib/varcode/annotators/registry.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-22T02:16:38,709 copying build/lib/varcode/annotators/fast.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-04-22T02:16:38,711 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,713 copying build/lib/varcode/errors.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,715 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-04-22T02:16:38,716 copying build/lib/varcode/effects/classify.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,719 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,722 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,724 copying build/lib/varcode/effects/fast_path.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,726 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,728 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,730 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,732 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,735 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,737 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,739 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,741 copying build/lib/varcode/effects/codon_tables.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,743 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,745 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,747 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,749 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-04-22T02:16:38,752 copying build/lib/varcode/sv_allele_parser.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,754 copying build/lib/varcode/phasing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,756 copying build/lib/varcode/genotype.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,758 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,760 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,762 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,764 copying build/lib/varcode/mutant_transcript.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,767 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-04-22T02:16:38,769 running install_egg_info 2026-04-22T02:16:38,774 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-4.16.0-py3.11.egg-info 2026-04-22T02:16:38,786 running install_scripts 2026-04-22T02:16:38,798 creating build/bdist.linux-armv7l/wheel/varcode-4.16.0.dist-info/WHEEL 2026-04-22T02:16:38,801 creating '/tmp/pip-wheel-nghzx9q5/.tmp-btke8cpn/varcode-4.16.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-22T02:16:38,804 adding 'varcode/__init__.py' 2026-04-22T02:16:38,806 adding 'varcode/common.py' 2026-04-22T02:16:38,808 adding 'varcode/cryptic_exons.py' 2026-04-22T02:16:38,810 adding 'varcode/csv_helpers.py' 2026-04-22T02:16:38,812 adding 'varcode/errors.py' 2026-04-22T02:16:38,813 adding 'varcode/genotype.py' 2026-04-22T02:16:38,815 adding 'varcode/maf.py' 2026-04-22T02:16:38,818 adding 'varcode/mutant_transcript.py' 2026-04-22T02:16:38,820 adding 'varcode/nucleotides.py' 2026-04-22T02:16:38,822 adding 'varcode/outcomes.py' 2026-04-22T02:16:38,824 adding 'varcode/phasing.py' 2026-04-22T02:16:38,826 adding 'varcode/reference.py' 2026-04-22T02:16:38,833 adding 'varcode/splice_outcomes.py' 2026-04-22T02:16:38,834 adding 'varcode/string_helpers.py' 2026-04-22T02:16:38,836 adding 'varcode/structural_variant.py' 2026-04-22T02:16:38,838 adding 'varcode/sv_allele_parser.py' 2026-04-22T02:16:38,839 adding 'varcode/ucsc_reference_names.py' 2026-04-22T02:16:38,841 adding 'varcode/util.py' 2026-04-22T02:16:38,844 adding 'varcode/variant.py' 2026-04-22T02:16:38,847 adding 'varcode/variant_collection.py' 2026-04-22T02:16:38,850 adding 'varcode/vcf.py' 2026-04-22T02:16:38,852 adding 'varcode/vcf_output.py' 2026-04-22T02:16:38,854 adding 'varcode/version.py' 2026-04-22T02:16:38,856 adding 'varcode/annotators/__init__.py' 2026-04-22T02:16:38,857 adding 'varcode/annotators/fast.py' 2026-04-22T02:16:38,859 adding 'varcode/annotators/protein_diff.py' 2026-04-22T02:16:38,860 adding 'varcode/annotators/registry.py' 2026-04-22T02:16:38,865 adding 'varcode/annotators/structural_variant.py' 2026-04-22T02:16:38,867 adding 'varcode/cli/__init__.py' 2026-04-22T02:16:38,868 adding 'varcode/cli/effects_script.py' 2026-04-22T02:16:38,869 adding 'varcode/cli/genes_script.py' 2026-04-22T02:16:38,870 adding 'varcode/cli/logging.conf' 2026-04-22T02:16:38,872 adding 'varcode/cli/variant_args.py' 2026-04-22T02:16:38,873 adding 'varcode/cli/version_info.py' 2026-04-22T02:16:38,875 adding 'varcode/effects/__init__.py' 2026-04-22T02:16:38,876 adding 'varcode/effects/classify.py' 2026-04-22T02:16:38,878 adding 'varcode/effects/codon_tables.py' 2026-04-22T02:16:38,879 adding 'varcode/effects/common.py' 2026-04-22T02:16:38,884 adding 'varcode/effects/effect_classes.py' 2026-04-22T02:16:38,887 adding 'varcode/effects/effect_collection.py' 2026-04-22T02:16:38,889 adding 'varcode/effects/effect_helpers.py' 2026-04-22T02:16:38,891 adding 'varcode/effects/effect_ordering.py' 2026-04-22T02:16:38,894 adding 'varcode/effects/effect_prediction.py' 2026-04-22T02:16:38,896 adding 'varcode/effects/effect_prediction_coding.py' 2026-04-22T02:16:38,897 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-04-22T02:16:38,900 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-04-22T02:16:38,901 adding 'varcode/effects/fast_path.py' 2026-04-22T02:16:38,903 adding 'varcode/effects/mutate.py' 2026-04-22T02:16:38,904 adding 'varcode/effects/transcript_helpers.py' 2026-04-22T02:16:38,906 adding 'varcode/effects/translate.py' 2026-04-22T02:16:38,909 adding 'varcode-4.16.0.dist-info/licenses/LICENSE' 2026-04-22T02:16:38,911 adding 'varcode-4.16.0.dist-info/METADATA' 2026-04-22T02:16:38,912 adding 'varcode-4.16.0.dist-info/WHEEL' 2026-04-22T02:16:38,913 adding 'varcode-4.16.0.dist-info/entry_points.txt' 2026-04-22T02:16:38,914 adding 'varcode-4.16.0.dist-info/top_level.txt' 2026-04-22T02:16:38,916 adding 'varcode-4.16.0.dist-info/RECORD' 2026-04-22T02:16:38,919 removing build/bdist.linux-armv7l/wheel 2026-04-22T02:16:39,031 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-04-22T02:16:39,038 Created wheel for varcode: filename=varcode-4.16.0-py3-none-any.whl size=169742 sha256=c58de777266c1c1dd0cda324f009d1af95048f31ddfaa13bef2114eeb4676ed0 2026-04-22T02:16:39,040 Stored in directory: /tmp/pip-ephem-wheel-cache-z52psp6x/wheels/5d/a7/91/f6fa1d19bab480a2bc1f8cd34eb74afd4201bea8834a7c25c8 2026-04-22T02:16:39,053 Successfully built varcode 2026-04-22T02:16:39,062 Removed build tracker: '/tmp/pip-build-tracker-6ote6i_e'