2026-04-22T09:34:07,684 Created temporary directory: /tmp/pip-ephem-wheel-cache-t5nwr17y
2026-04-22T09:34:07,686 Created temporary directory: /tmp/pip-build-tracker-s98xyfok
2026-04-22T09:34:07,687 Initialized build tracking at /tmp/pip-build-tracker-s98xyfok
2026-04-22T09:34:07,687 Created build tracker: /tmp/pip-build-tracker-s98xyfok
2026-04-22T09:34:07,688 Entered build tracker: /tmp/pip-build-tracker-s98xyfok
2026-04-22T09:34:07,689 Created temporary directory: /tmp/pip-wheel-8k9_jplp
2026-04-22T09:34:07,691 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T09:34:07,694 Created temporary directory: /tmp/pip-ephem-wheel-cache-yxg8zn9w
2026-04-22T09:34:07,716 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T09:34:07,720 2 location(s) to search for versions of cremdock:
2026-04-22T09:34:07,720 * https://pypi.org/simple/cremdock/
2026-04-22T09:34:07,720 * https://www.piwheels.org/simple/cremdock/
2026-04-22T09:34:07,721 Fetching project page and analyzing links: https://pypi.org/simple/cremdock/
2026-04-22T09:34:07,721 Getting page https://pypi.org/simple/cremdock/
2026-04-22T09:34:07,723 Found index url https://pypi.org/simple
2026-04-22T09:34:07,945 Fetched page https://pypi.org/simple/cremdock/ as application/vnd.pypi.simple.v1+json
2026-04-22T09:34:07,947   Skipping link: No binaries permitted for cremdock: https://files.pythonhosted.org/packages/89/b9/271fd369f350a69f27c1309c5ed7e34beb5c4cff8b56ab3010b09b952e79/cremdock-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9)
2026-04-22T09:34:07,949   Found link https://files.pythonhosted.org/packages/35/0d/15c0f3a681caf1c13e91357020d309970ca35a5d451a3cf0c5c3f5c9a7b5/cremdock-0.1.0.tar.gz (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9), version: 0.1.0
2026-04-22T09:34:07,949   Skipping link: No binaries permitted for cremdock: https://files.pythonhosted.org/packages/88/5b/52eee1abeaa2d7aaea768ceb92e5abcce5b2e60bf5f8b073d157ad5d13c0/cremdock-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9)
2026-04-22T09:34:07,950   Found link https://files.pythonhosted.org/packages/5d/fc/30d42c0efd9b05ba088668b722af3d1b7a175baa6a6e779ca436f04209bb/cremdock-0.2.0.tar.gz (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9), version: 0.2.0
2026-04-22T09:34:07,951   Skipping link: No binaries permitted for cremdock: https://files.pythonhosted.org/packages/40/9b/09877276b233c199950964309666e1288ebc74dceed3cf47a9b7014d2060/cremdock-0.3.0-py3-none-any.whl (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9)
2026-04-22T09:34:07,952   Found link https://files.pythonhosted.org/packages/d0/5c/f3e5016710dd3716d046607e8b912d459b8ed1e36519db382efac07a96eb/cremdock-0.3.0.tar.gz (from https://pypi.org/simple/cremdock/) (requires-python:>=3.9), version: 0.3.0
2026-04-22T09:34:07,953 Fetching project page and analyzing links: https://www.piwheels.org/simple/cremdock/
2026-04-22T09:34:07,954 Getting page https://www.piwheels.org/simple/cremdock/
2026-04-22T09:34:07,956 Found index url https://www.piwheels.org/simple
2026-04-22T09:34:08,130 Fetched page https://www.piwheels.org/simple/cremdock/ as text/html
2026-04-22T09:34:08,132   Skipping link: No binaries permitted for cremdock: https://archive1.piwheels.org/simple/cremdock/cremdock-0.2.0-py3-none-any.whl#sha256=235369737e29c0d5eacfdbb2e810d59e248bed90f68496a51d53315a7c978abc (from https://www.piwheels.org/simple/cremdock/) (requires-python:>=3.9)
2026-04-22T09:34:08,133   Skipping link: No binaries permitted for cremdock: https://archive1.piwheels.org/simple/cremdock/cremdock-0.1.0-py3-none-any.whl#sha256=cc85a92d23b9327ab4f5151fb255a649f20233ecba4a58fba532207142a124dc (from https://www.piwheels.org/simple/cremdock/) (requires-python:>=3.9)
2026-04-22T09:34:08,133 Skipping link: not a file: https://www.piwheels.org/simple/cremdock/
2026-04-22T09:34:08,135 Skipping link: not a file: https://pypi.org/simple/cremdock/
2026-04-22T09:34:08,159 Given no hashes to check 1 links for project 'cremdock': discarding no candidates
2026-04-22T09:34:08,179 Collecting cremdock==0.3.0
2026-04-22T09:34:08,182   Created temporary directory: /tmp/pip-unpack-3ox2brqh
2026-04-22T09:34:08,331   Downloading cremdock-0.3.0.tar.gz (31 kB)
2026-04-22T09:34:08,403   Added cremdock==0.3.0 from https://files.pythonhosted.org/packages/d0/5c/f3e5016710dd3716d046607e8b912d459b8ed1e36519db382efac07a96eb/cremdock-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-s98xyfok'
2026-04-22T09:34:08,405   Running setup.py (path:/tmp/pip-wheel-8k9_jplp/cremdock_3e52be31301d4fe59093e2280a54d39b/setup.py) egg_info for package cremdock
2026-04-22T09:34:08,406   Created temporary directory: /tmp/pip-pip-egg-info-286te1iu
2026-04-22T09:34:08,406   Preparing metadata (setup.py): started
2026-04-22T09:34:08,408   Running command python setup.py egg_info
2026-04-22T09:34:09,415   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-22T09:34:09,415   !!

2026-04-22T09:34:09,417           ********************************************************************************
2026-04-22T09:34:09,417           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-22T09:34:09,418           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-22T09:34:09,420           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-22T09:34:09,420           ********************************************************************************

2026-04-22T09:34:09,421   !!
2026-04-22T09:34:09,422     self._finalize_license_expression()
2026-04-22T09:34:09,445   running egg_info
2026-04-22T09:34:09,473   creating /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info
2026-04-22T09:34:09,474   writing /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/PKG-INFO
2026-04-22T09:34:09,479   writing dependency_links to /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/dependency_links.txt
2026-04-22T09:34:09,480   writing entry points to /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/entry_points.txt
2026-04-22T09:34:09,483   writing requirements to /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/requires.txt
2026-04-22T09:34:09,484   writing top-level names to /tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/top_level.txt
2026-04-22T09:34:09,485   writing manifest file '/tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/SOURCES.txt'
2026-04-22T09:34:09,579   reading manifest file '/tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/SOURCES.txt'
2026-04-22T09:34:09,581   adding license file 'LICENSE'
2026-04-22T09:34:09,584   writing manifest file '/tmp/pip-pip-egg-info-286te1iu/cremdock.egg-info/SOURCES.txt'
2026-04-22T09:34:09,691   Preparing metadata (setup.py): finished with status 'done'
2026-04-22T09:34:09,696   Source in /tmp/pip-wheel-8k9_jplp/cremdock_3e52be31301d4fe59093e2280a54d39b has version 0.3.0, which satisfies requirement cremdock==0.3.0 from https://files.pythonhosted.org/packages/d0/5c/f3e5016710dd3716d046607e8b912d459b8ed1e36519db382efac07a96eb/cremdock-0.3.0.tar.gz
2026-04-22T09:34:09,698   Removed cremdock==0.3.0 from https://files.pythonhosted.org/packages/d0/5c/f3e5016710dd3716d046607e8b912d459b8ed1e36519db382efac07a96eb/cremdock-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-s98xyfok'
2026-04-22T09:34:09,705 Created temporary directory: /tmp/pip-unpack-9yuu4vag
2026-04-22T09:34:09,706 Building wheels for collected packages: cremdock
2026-04-22T09:34:09,713   Created temporary directory: /tmp/pip-wheel-oakqu_in
2026-04-22T09:34:09,714   Building wheel for cremdock (setup.py): started
2026-04-22T09:34:09,715   Destination directory: /tmp/pip-wheel-oakqu_in
2026-04-22T09:34:09,716   Running command python setup.py bdist_wheel
2026-04-22T09:34:10,564   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-22T09:34:10,564   !!

2026-04-22T09:34:10,565           ********************************************************************************
2026-04-22T09:34:10,566           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-22T09:34:10,566           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-04-22T09:34:10,567           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-22T09:34:10,568           ********************************************************************************

2026-04-22T09:34:10,569   !!
2026-04-22T09:34:10,570     self._finalize_license_expression()
2026-04-22T09:34:10,570   running bdist_wheel
2026-04-22T09:34:10,699   running build
2026-04-22T09:34:10,699   running build_py
2026-04-22T09:34:10,732   creating build/lib/cremdock
2026-04-22T09:34:10,734   copying cremdock/cremdock.py -> build/lib/cremdock
2026-04-22T09:34:10,737   copying cremdock/database.py -> build/lib/cremdock
2026-04-22T09:34:10,739   copying cremdock/sampling.py -> build/lib/cremdock
2026-04-22T09:34:10,741   copying cremdock/molecules.py -> build/lib/cremdock
2026-04-22T09:34:10,743   copying cremdock/crem_grow.py -> build/lib/cremdock
2026-04-22T09:34:10,745   copying cremdock/user_protected_atoms.py -> build/lib/cremdock
2026-04-22T09:34:10,747   copying cremdock/selection.py -> build/lib/cremdock
2026-04-22T09:34:10,750   copying cremdock/ranking.py -> build/lib/cremdock
2026-04-22T09:34:10,752   copying cremdock/__init__.py -> build/lib/cremdock
2026-04-22T09:34:10,753   copying cremdock/arg_types.py -> build/lib/cremdock
2026-04-22T09:34:10,755   copying cremdock/auxiliary.py -> build/lib/cremdock
2026-04-22T09:34:10,757   creating build/lib/cremdock/scripts
2026-04-22T09:34:10,759   copying cremdock/scripts/plif.py -> build/lib/cremdock/scripts
2026-04-22T09:34:10,761   copying cremdock/scripts/__init__.py -> build/lib/cremdock/scripts
2026-04-22T09:34:10,763   copying cremdock/scripts/arg_types.py -> build/lib/cremdock/scripts
2026-04-22T09:34:10,794   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-04-22T09:34:10,795   !!

2026-04-22T09:34:10,796           ********************************************************************************
2026-04-22T09:34:10,797           Please avoid running ``setup.py`` directly.
2026-04-22T09:34:10,797           Instead, use pypa/build, pypa/installer or other
2026-04-22T09:34:10,798           standards-based tools.

2026-04-22T09:34:10,799           This deprecation is overdue, please update your project and remove deprecated
2026-04-22T09:34:10,800           calls to avoid build errors in the future.

2026-04-22T09:34:10,801           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-04-22T09:34:10,802           ********************************************************************************

2026-04-22T09:34:10,804   !!
2026-04-22T09:34:10,804     self.initialize_options()
2026-04-22T09:34:10,828   installing to build/bdist.linux-armv7l/wheel
2026-04-22T09:34:10,829   running install
2026-04-22T09:34:10,852   running install_lib
2026-04-22T09:34:10,879   creating build/bdist.linux-armv7l/wheel
2026-04-22T09:34:10,881   creating build/bdist.linux-armv7l/wheel/cremdock
2026-04-22T09:34:10,882   copying build/lib/cremdock/cremdock.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,885   copying build/lib/cremdock/database.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,887   copying build/lib/cremdock/sampling.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,889   copying build/lib/cremdock/molecules.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,891   copying build/lib/cremdock/crem_grow.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,893   copying build/lib/cremdock/user_protected_atoms.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,896   creating build/bdist.linux-armv7l/wheel/cremdock/scripts
2026-04-22T09:34:10,897   copying build/lib/cremdock/scripts/plif.py -> build/bdist.linux-armv7l/wheel/./cremdock/scripts
2026-04-22T09:34:10,899   copying build/lib/cremdock/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./cremdock/scripts
2026-04-22T09:34:10,900   copying build/lib/cremdock/scripts/arg_types.py -> build/bdist.linux-armv7l/wheel/./cremdock/scripts
2026-04-22T09:34:10,902   copying build/lib/cremdock/selection.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,904   copying build/lib/cremdock/ranking.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,906   copying build/lib/cremdock/__init__.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,908   copying build/lib/cremdock/arg_types.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,909   copying build/lib/cremdock/auxiliary.py -> build/bdist.linux-armv7l/wheel/./cremdock
2026-04-22T09:34:10,911   running install_egg_info
2026-04-22T09:34:10,944   running egg_info
2026-04-22T09:34:10,970   writing cremdock.egg-info/PKG-INFO
2026-04-22T09:34:10,975   writing dependency_links to cremdock.egg-info/dependency_links.txt
2026-04-22T09:34:10,977   writing entry points to cremdock.egg-info/entry_points.txt
2026-04-22T09:34:10,979   writing requirements to cremdock.egg-info/requires.txt
2026-04-22T09:34:10,981   writing top-level names to cremdock.egg-info/top_level.txt
2026-04-22T09:34:11,011   reading manifest file 'cremdock.egg-info/SOURCES.txt'
2026-04-22T09:34:11,013   adding license file 'LICENSE'
2026-04-22T09:34:11,016   writing manifest file 'cremdock.egg-info/SOURCES.txt'
2026-04-22T09:34:11,018   Copying cremdock.egg-info to build/bdist.linux-armv7l/wheel/./cremdock-0.3.0-py3.11.egg-info
2026-04-22T09:34:11,029   running install_scripts
2026-04-22T09:34:11,042   creating build/bdist.linux-armv7l/wheel/cremdock-0.3.0.dist-info/WHEEL
2026-04-22T09:34:11,044   creating '/tmp/pip-wheel-oakqu_in/cremdock-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-22T09:34:11,046   adding 'cremdock/__init__.py'
2026-04-22T09:34:11,048   adding 'cremdock/arg_types.py'
2026-04-22T09:34:11,049   adding 'cremdock/auxiliary.py'
2026-04-22T09:34:11,051   adding 'cremdock/crem_grow.py'
2026-04-22T09:34:11,054   adding 'cremdock/cremdock.py'
2026-04-22T09:34:11,056   adding 'cremdock/database.py'
2026-04-22T09:34:11,057   adding 'cremdock/molecules.py'
2026-04-22T09:34:11,059   adding 'cremdock/ranking.py'
2026-04-22T09:34:11,060   adding 'cremdock/sampling.py'
2026-04-22T09:34:11,062   adding 'cremdock/selection.py'
2026-04-22T09:34:11,064   adding 'cremdock/user_protected_atoms.py'
2026-04-22T09:34:11,065   adding 'cremdock/scripts/__init__.py'
2026-04-22T09:34:11,067   adding 'cremdock/scripts/arg_types.py'
2026-04-22T09:34:11,068   adding 'cremdock/scripts/plif.py'
2026-04-22T09:34:11,071   adding 'cremdock-0.3.0.dist-info/licenses/LICENSE'
2026-04-22T09:34:11,073   adding 'cremdock-0.3.0.dist-info/METADATA'
2026-04-22T09:34:11,074   adding 'cremdock-0.3.0.dist-info/WHEEL'
2026-04-22T09:34:11,075   adding 'cremdock-0.3.0.dist-info/entry_points.txt'
2026-04-22T09:34:11,076   adding 'cremdock-0.3.0.dist-info/top_level.txt'
2026-04-22T09:34:11,077   adding 'cremdock-0.3.0.dist-info/RECORD'
2026-04-22T09:34:11,079   removing build/bdist.linux-armv7l/wheel
2026-04-22T09:34:11,193   Building wheel for cremdock (setup.py): finished with status 'done'
2026-04-22T09:34:11,196   Created wheel for cremdock: filename=cremdock-0.3.0-py3-none-any.whl size=31165 sha256=379ace55677cc01bac4a9b1475ef0ab999c6e2e9b28310c69cbb5dc1fe8a71ae
2026-04-22T09:34:11,197   Stored in directory: /tmp/pip-ephem-wheel-cache-yxg8zn9w/wheels/ea/ff/82/4d3a335f88a84e579f4b98ef7011fdb4efeeb6b29f61ce26ab
2026-04-22T09:34:11,211 Successfully built cremdock
2026-04-22T09:34:11,217 Removed build tracker: '/tmp/pip-build-tracker-s98xyfok'