2026-04-22T10:04:25,532 Created temporary directory: /tmp/pip-ephem-wheel-cache-wlwx8x4s
2026-04-22T10:04:25,534 Created temporary directory: /tmp/pip-build-tracker-3quiljxa
2026-04-22T10:04:25,534 Initialized build tracking at /tmp/pip-build-tracker-3quiljxa
2026-04-22T10:04:25,535 Created build tracker: /tmp/pip-build-tracker-3quiljxa
2026-04-22T10:04:25,535 Entered build tracker: /tmp/pip-build-tracker-3quiljxa
2026-04-22T10:04:25,536 Created temporary directory: /tmp/pip-wheel-q5nagypi
2026-04-22T10:04:25,540 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T10:04:25,542 Created temporary directory: /tmp/pip-ephem-wheel-cache-_s8r69hu
2026-04-22T10:04:25,563 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T10:04:25,567 2 location(s) to search for versions of acellera-htmd:
2026-04-22T10:04:25,567 * https://pypi.org/simple/acellera-htmd/
2026-04-22T10:04:25,567 * https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T10:04:25,568 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-04-22T10:04:25,569 Getting page https://pypi.org/simple/acellera-htmd/
2026-04-22T10:04:25,570 Found index url https://pypi.org/simple
2026-04-22T10:04:25,797 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-04-22T10:04:25,799   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-04-22T10:04:25,800   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-04-22T10:04:25,801   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-04-22T10:04:25,802   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-04-22T10:04:25,802   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-04-22T10:04:25,803   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-04-22T10:04:25,804   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-04-22T10:04:25,805   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-04-22T10:04:25,806   Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2
2026-04-22T10:04:25,807 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T10:04:25,808 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T10:04:25,809 Found index url https://www.piwheels.org/simple
2026-04-22T10:04:25,985 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-04-22T10:04:25,987   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T10:04:25,988   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T10:04:25,988   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T10:04:25,989   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T10:04:25,989   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-04-22T10:04:25,990 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T10:04:25,990 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-04-22T10:04:26,011 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-04-22T10:04:26,031 Collecting acellera-htmd==2.6.2
2026-04-22T10:04:26,033   Created temporary directory: /tmp/pip-unpack-u9qsvtls
2026-04-22T10:04:26,263   Downloading acellera_htmd-2.6.2.tar.gz (4.0 MB)
2026-04-22T10:04:28,257   Added acellera-htmd==2.6.2 from https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-3quiljxa'
2026-04-22T10:04:28,263   Created temporary directory: /tmp/pip-build-env-_oij0x4l
2026-04-22T10:04:28,267   Installing build dependencies: started
2026-04-22T10:04:28,269   Running command pip subprocess to install build dependencies
2026-04-22T10:04:29,411   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-22T10:04:29,863   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T10:04:29,886   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T10:04:31,660   Collecting setuptools
2026-04-22T10:04:31,752     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-22T10:04:32,138   Collecting setuptools-scm>=8
2026-04-22T10:04:32,155     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-04-22T10:04:32,244   Collecting vcs-versioning>=1.0.0.dev0
2026-04-22T10:04:32,263     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-04-22T10:04:32,444   Collecting packaging>=20
2026-04-22T10:04:32,460     Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB)
2026-04-22T10:04:35,526   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-04-22T10:04:39,149     Creating /tmp/pip-build-env-_oij0x4l/overlay/local/bin
2026-04-22T10:04:39,151     changing mode of /tmp/pip-build-env-_oij0x4l/overlay/local/bin/vcs-versioning to 755
2026-04-22T10:04:39,261     changing mode of /tmp/pip-build-env-_oij0x4l/overlay/local/bin/setuptools-scm to 755
2026-04-22T10:04:39,290   Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-04-22T10:04:39,574   Installing build dependencies: finished with status 'done'
2026-04-22T10:04:39,581   Getting requirements to build wheel: started
2026-04-22T10:04:39,582   Running command Getting requirements to build wheel
2026-04-22T10:04:40,378   running egg_info
2026-04-22T10:04:40,386   writing acellera_htmd.egg-info/PKG-INFO
2026-04-22T10:04:40,391   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-22T10:04:40,393   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-22T10:04:40,396   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-22T10:04:40,398   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-22T10:04:40,487   /tmp/pip-build-env-_oij0x4l/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T10:04:40,487     return get_active_overrides().subprocess_timeout
2026-04-22T10:04:40,495   listing git files failed - pretending there aren't any
2026-04-22T10:04:40,500   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:40,522   reading manifest template 'MANIFEST.in'
2026-04-22T10:04:40,540   no previously-included directories found matching 'htmd/data'
2026-04-22T10:04:40,542   no previously-included directories found matching '.github'
2026-04-22T10:04:40,543   no previously-included directories found matching 'doc'
2026-04-22T10:04:40,545   no previously-included directories found matching 'package'
2026-04-22T10:04:40,546   no previously-included directories found matching 'tests'
2026-04-22T10:04:40,548   no previously-included directories found matching 'tutorials'
2026-04-22T10:04:40,549   warning: no previously-included files found matching 'Makefile'
2026-04-22T10:04:40,550   adding license file 'LICENSE'
2026-04-22T10:04:40,573   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:40,678   Getting requirements to build wheel: finished with status 'done'
2026-04-22T10:04:40,681   Created temporary directory: /tmp/pip-modern-metadata-aw4kx7qz
2026-04-22T10:04:40,684   Preparing metadata (pyproject.toml): started
2026-04-22T10:04:40,685   Running command Preparing metadata (pyproject.toml)
2026-04-22T10:04:41,430   running dist_info
2026-04-22T10:04:41,444   creating /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info
2026-04-22T10:04:41,445   writing /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/PKG-INFO
2026-04-22T10:04:41,450   writing dependency_links to /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/dependency_links.txt
2026-04-22T10:04:41,452   writing entry points to /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/entry_points.txt
2026-04-22T10:04:41,456   writing requirements to /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/requires.txt
2026-04-22T10:04:41,457   writing top-level names to /tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/top_level.txt
2026-04-22T10:04:41,459   writing manifest file '/tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:41,531   /tmp/pip-build-env-_oij0x4l/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T10:04:41,532     return get_active_overrides().subprocess_timeout
2026-04-22T10:04:41,538   listing git files failed - pretending there aren't any
2026-04-22T10:04:41,543   reading manifest file '/tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:41,545   reading manifest template 'MANIFEST.in'
2026-04-22T10:04:41,563   no previously-included directories found matching 'htmd/data'
2026-04-22T10:04:41,564   no previously-included directories found matching '.github'
2026-04-22T10:04:41,565   no previously-included directories found matching 'doc'
2026-04-22T10:04:41,565   no previously-included directories found matching 'package'
2026-04-22T10:04:41,566   no previously-included directories found matching 'tests'
2026-04-22T10:04:41,567   no previously-included directories found matching 'tutorials'
2026-04-22T10:04:41,568   warning: no previously-included files found matching 'Makefile'
2026-04-22T10:04:41,569   adding license file 'LICENSE'
2026-04-22T10:04:41,585   writing manifest file '/tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:41,587   creating '/tmp/pip-modern-metadata-aw4kx7qz/acellera_htmd-2.6.2.dist-info'
2026-04-22T10:04:41,723   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-22T10:04:41,728   Source in /tmp/pip-wheel-q5nagypi/acellera-htmd_70522a16e1534522ac8c06253e5f9118 has version 2.6.2, which satisfies requirement acellera-htmd==2.6.2 from https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz
2026-04-22T10:04:41,729   Removed acellera-htmd==2.6.2 from https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-3quiljxa'
2026-04-22T10:04:41,735 Created temporary directory: /tmp/pip-unpack-n70238qa
2026-04-22T10:04:41,735 Building wheels for collected packages: acellera-htmd
2026-04-22T10:04:41,740   Created temporary directory: /tmp/pip-wheel-4xlff4m_
2026-04-22T10:04:41,741   Destination directory: /tmp/pip-wheel-4xlff4m_
2026-04-22T10:04:41,743   Building wheel for acellera-htmd (pyproject.toml): started
2026-04-22T10:04:41,744   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-04-22T10:04:42,461   running bdist_wheel
2026-04-22T10:04:42,486   running build
2026-04-22T10:04:42,487   running build_py
2026-04-22T10:04:42,488   creating build/lib/htmd
2026-04-22T10:04:42,491   copying htmd/parallelprogress.py -> build/lib/htmd
2026-04-22T10:04:42,493   copying htmd/home.py -> build/lib/htmd
2026-04-22T10:04:42,495   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-04-22T10:04:42,497   copying htmd/config.py -> build/lib/htmd
2026-04-22T10:04:42,499   copying htmd/simlist.py -> build/lib/htmd
2026-04-22T10:04:42,502   copying htmd/pathplanning.py -> build/lib/htmd
2026-04-22T10:04:42,505   copying htmd/dock.py -> build/lib/htmd
2026-04-22T10:04:42,507   copying htmd/units.py -> build/lib/htmd
2026-04-22T10:04:42,509   copying htmd/decorators.py -> build/lib/htmd
2026-04-22T10:04:42,511   copying htmd/license.py -> build/lib/htmd
2026-04-22T10:04:42,513   copying htmd/__init__.py -> build/lib/htmd
2026-04-22T10:04:42,515   copying htmd/ui.py -> build/lib/htmd
2026-04-22T10:04:42,517   copying htmd/latest.py -> build/lib/htmd
2026-04-22T10:04:42,519   copying htmd/session.py -> build/lib/htmd
2026-04-22T10:04:42,521   copying htmd/metricdata.py -> build/lib/htmd
2026-04-22T10:04:42,524   copying htmd/mutualinformation.py -> build/lib/htmd
2026-04-22T10:04:42,527   copying htmd/model.py -> build/lib/htmd
2026-04-22T10:04:42,531   copying htmd/kinetics.py -> build/lib/htmd
2026-04-22T10:04:42,533   copying htmd/util.py -> build/lib/htmd
2026-04-22T10:04:42,536   copying htmd/versionwarnings.py -> build/lib/htmd
2026-04-22T10:04:42,538   creating build/lib/htmd/projections
2026-04-22T10:04:42,539   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-04-22T10:04:42,541   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-04-22T10:04:42,544   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-04-22T10:04:42,546   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-04-22T10:04:42,548   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-04-22T10:04:42,551   creating build/lib/htmd/clustering
2026-04-22T10:04:42,552   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-04-22T10:04:42,554   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-04-22T10:04:42,556   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-04-22T10:04:42,559   creating build/lib/htmd/builder
2026-04-22T10:04:42,560   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-04-22T10:04:42,562   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-04-22T10:04:42,565   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-04-22T10:04:42,567   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-04-22T10:04:42,571   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-04-22T10:04:42,574   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-04-22T10:04:42,576   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-04-22T10:04:42,578   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-04-22T10:04:42,581   creating build/lib/htmd/adaptive
2026-04-22T10:04:42,582   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,585   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,587   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,590   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,592   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,595   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,597   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-04-22T10:04:42,600   creating build/lib/htmd/membranebuilder
2026-04-22T10:04:42,601   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-04-22T10:04:42,604   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-04-22T10:04:42,606   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-04-22T10:04:42,608   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-04-22T10:04:42,611   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-04-22T10:04:42,645   creating build/lib/htmd/share
2026-04-22T10:04:42,646   copying htmd/share/license-checker -> build/lib/htmd/share
2026-04-22T10:04:42,654   creating build/lib/htmd/share/builder
2026-04-22T10:04:42,655   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-04-22T10:04:42,661   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-04-22T10:04:42,663   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-04-22T10:04:42,665   creating build/lib/htmd/share/builder/charmmfiles
2026-04-22T10:04:42,666   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-04-22T10:04:42,669   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-04-22T10:04:42,670   creating build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,671   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,677   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,680   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,686   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,690   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,697   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,700   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,716   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,719   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,721   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:42,725   creating build/lib/htmd/share/builder/charmmfiles/str
2026-04-22T10:04:42,726   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-04-22T10:04:42,729   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,731   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,754   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,759   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,778   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,782   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:42,785   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,786   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,789   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,791   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,793   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,796   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:42,798   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,799   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,802   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,807   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,831   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,847   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,881   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,885   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,893   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,907   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,915   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,919   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,924   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,932   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,936   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,938   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,951   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,956   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,961   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,966   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:42,994   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T10:04:42,996   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T10:04:42,999   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,000   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,031   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,035   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,042   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,046   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,049   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,053   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,058   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,060   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,063   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,066   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,070   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:43,073   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,074   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,079   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,102   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,121   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,127   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,130   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:43,139   creating build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,140   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,143   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,191   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,199   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,213   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,217   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,219   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,229   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,232   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,236   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:43,239   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,241   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,243   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,246   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,249   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,251   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,254   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,257   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,259   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,261   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,264   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,266   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,269   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,271   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,273   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,275   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,278   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,280   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,282   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,284   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,287   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,290   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,292   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:43,294   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,295   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,298   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,301   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,303   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,305   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,308   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:43,311   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,312   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,315   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,317   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,319   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,321   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,324   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,326   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,328   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,331   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,332   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,335   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,337   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,339   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,341   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,343   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,345   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,347   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,349   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,351   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,353   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,355   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,357   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,359   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,361   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,363   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,365   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,367   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,369   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,371   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,374   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,376   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,378   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,380   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,382   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,384   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,386   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,388   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,391   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,393   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,395   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,397   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,399   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,401   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,403   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,405   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,407   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,409   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,411   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:43,413   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,414   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,417   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,419   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,421   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,423   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,425   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,427   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,429   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,431   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,433   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,435   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,437   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,440   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,442   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,444   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,446   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,448   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,450   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,452   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,455   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,457   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,459   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,461   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,463   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,465   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,468   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,470   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,472   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,474   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,476   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,478   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,480   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,482   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,484   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,486   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,489   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,490   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,493   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,495   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,497   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,499   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,501   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,503   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,505   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,508   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,510   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,512   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,514   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,516   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,518   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,520   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,522   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,525   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,527   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,529   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,531   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,534   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,536   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,538   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,540   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,542   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,544   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,546   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,548   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,550   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,552   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,554   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,556   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,559   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,561   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,563   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,566   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,568   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,570   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,573   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,575   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,577   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,580   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,582   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,584   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,586   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,589   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,591   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,593   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,596   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,600   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,603   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,605   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,607   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,609   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,611   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,613   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,615   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,617   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,619   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,621   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,623   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,625   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,628   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,630   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,633   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,635   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,637   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,639   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,641   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,643   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,645   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,647   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,650   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,652   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,654   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,656   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,659   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,661   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,663   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,665   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,667   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,669   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,671   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,673   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,675   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,677   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,679   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,681   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,683   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,685   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,687   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,689   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,692   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,694   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,696   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,698   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:43,700   creating build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,701   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,703   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,705   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,707   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,709   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T10:04:43,711   creating build/lib/htmd/share/solvate
2026-04-22T10:04:43,712   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-04-22T10:04:43,748   creating build/lib/htmd/share/membranebuilder/lipids
2026-04-22T10:04:43,750   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-04-22T10:04:43,752   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-22T10:04:43,753   copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-22T10:04:43,756   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-22T10:04:43,757   copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-22T10:04:43,760   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-22T10:04:43,761   copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-22T10:04:43,781   installing to build/bdist.linux-armv7l/wheel
2026-04-22T10:04:43,781   running install
2026-04-22T10:04:43,803   running install_lib
2026-04-22T10:04:43,811   creating build/bdist.linux-armv7l/wheel
2026-04-22T10:04:43,814   creating build/bdist.linux-armv7l/wheel/htmd
2026-04-22T10:04:43,816   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-04-22T10:04:43,817   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T10:04:43,819   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T10:04:43,822   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T10:04:43,824   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T10:04:43,826   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T10:04:43,828   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,830   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,832   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,834   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,836   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,839   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,842   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-04-22T10:04:43,843   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T10:04:43,845   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T10:04:43,847   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T10:04:43,849   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,852   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,854   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,856   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-04-22T10:04:43,857   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,860   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,862   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,865   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,869   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,872   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,874   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,876   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T10:04:43,879   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,882   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-04-22T10:04:43,883   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,886   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,888   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,891   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,893   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,896   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,899   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T10:04:43,901   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:43,903   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-04-22T10:04:43,905   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-04-22T10:04:43,907   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-04-22T10:04:43,909   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,910   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,914   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,917   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,923   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,928   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,935   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,937   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,953   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,955   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,958   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T10:04:43,960   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-22T10:04:43,963   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-04-22T10:04:43,964   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-04-22T10:04:43,967   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:43,968   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:43,992   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:43,996   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:44,015   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:44,018   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T10:04:44,022   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,023   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,026   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,027   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,030   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,032   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T10:04:44,034   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,035   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,037   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,042   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,075   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,095   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,126   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,131   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,139   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,153   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,160   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,163   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,169   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,176   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,179   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,181   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,194   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,198   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,203   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,206   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T10:04:44,231   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T10:04:44,232   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T10:04:44,235   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,236   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,265   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,267   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,273   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,276   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,280   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,283   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,287   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,290   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,293   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,295   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,299   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T10:04:44,303   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,304   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,310   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,346   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,375   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,381   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,385   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T10:04:44,393   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-22T10:04:44,396   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,397   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,401   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,450   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,457   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,469   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,473   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,475   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,484   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,487   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,491   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T10:04:44,494   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-04-22T10:04:44,496   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,497   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,499   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,502   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,504   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,506   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,507   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,511   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,512   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,514   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,517   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,518   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,521   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,522   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,524   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,526   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,527   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,530   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,532   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,534   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,535   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,538   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,540   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T10:04:44,543   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,544   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,546   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,548   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,550   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,552   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,554   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T10:04:44,558   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,559   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,562   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,563   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,565   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,567   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,571   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,572   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,574   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,576   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,578   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,580   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,582   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,583   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,585   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,587   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,589   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,591   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,593   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,595   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,597   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,599   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,601   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,603   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,605   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,606   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,608   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,610   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,612   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,614   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,616   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,618   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,620   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,622   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,624   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,626   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,628   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,630   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,632   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,633   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,635   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,637   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,639   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,641   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,643   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,645   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,647   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,649   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,651   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T10:04:44,656   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,657   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,659   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,661   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,663   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,665   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,667   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,669   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,670   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,672   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,674   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,676   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,678   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,680   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,681   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,683   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,685   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,687   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,688   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,690   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,692   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,694   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,696   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,697   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,699   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,701   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,703   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,705   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,707   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,709   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,711   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,713   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,715   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,717   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,719   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,720   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,722   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,724   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,726   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,728   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,730   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,731   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,733   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,735   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,737   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,739   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,740   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,742   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,744   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,746   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,748   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,750   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,752   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,754   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,756   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,758   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,760   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,762   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,765   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,767   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,769   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,771   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,773   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,775   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,777   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,779   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,781   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,783   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,785   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,788   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,790   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,792   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,794   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,796   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,799   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,801   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,803   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,805   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,808   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,810   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,812   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,815   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,817   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,819   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,821   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,823   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,827   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,830   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,832   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,834   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,836   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,838   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,841   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,843   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,845   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,847   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,850   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,852   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,854   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,856   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,858   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,861   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,863   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,865   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,868   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,870   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,873   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,875   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,877   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,879   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,881   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,883   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,885   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,887   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,890   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,892   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,894   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,896   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,898   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,901   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,903   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,905   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,907   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,909   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,912   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,914   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,916   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,919   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,921   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,924   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,927   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,929   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,932   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T10:04:44,935   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-04-22T10:04:44,936   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T10:04:44,939   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T10:04:44,941   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T10:04:44,943   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T10:04:44,945   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T10:04:44,947   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T10:04:44,953   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T10:04:44,955   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T10:04:44,958   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-04-22T10:04:44,968   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-04-22T10:04:44,970   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-04-22T10:04:45,011   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-04-22T10:04:45,013   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-04-22T10:04:45,015   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-04-22T10:04:45,016   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-04-22T10:04:45,019   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-04-22T10:04:45,021   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-04-22T10:04:45,022   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-04-22T10:04:45,025   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-04-22T10:04:45,026   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-04-22T10:04:45,029   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,031   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,033   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,035   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,038   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,041   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,044   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,047   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,049   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T10:04:45,052   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-04-22T10:04:45,053   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T10:04:45,055   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T10:04:45,057   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T10:04:45,059   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T10:04:45,061   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T10:04:45,063   running install_egg_info
2026-04-22T10:04:45,076   running egg_info
2026-04-22T10:04:45,083   writing acellera_htmd.egg-info/PKG-INFO
2026-04-22T10:04:45,087   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-22T10:04:45,089   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-22T10:04:45,092   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-22T10:04:45,093   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-22T10:04:45,159   /tmp/pip-build-env-_oij0x4l/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T10:04:45,159     return get_active_overrides().subprocess_timeout
2026-04-22T10:04:45,167   listing git files failed - pretending there aren't any
2026-04-22T10:04:45,172   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:45,192   reading manifest template 'MANIFEST.in'
2026-04-22T10:04:45,210   no previously-included directories found matching 'htmd/data'
2026-04-22T10:04:45,211   no previously-included directories found matching '.github'
2026-04-22T10:04:45,213   no previously-included directories found matching 'doc'
2026-04-22T10:04:45,214   no previously-included directories found matching 'package'
2026-04-22T10:04:45,215   no previously-included directories found matching 'tests'
2026-04-22T10:04:45,216   no previously-included directories found matching 'tutorials'
2026-04-22T10:04:45,218   warning: no previously-included files found matching 'Makefile'
2026-04-22T10:04:45,218   adding license file 'LICENSE'
2026-04-22T10:04:45,240   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T10:04:45,242   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.2-py3.11.egg-info
2026-04-22T10:04:45,253   running install_scripts
2026-04-22T10:04:45,265   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.2.dist-info/WHEEL
2026-04-22T10:04:45,268   creating '/tmp/pip-wheel-4xlff4m_/.tmp-26jivkll/acellera_htmd-2.6.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-22T10:04:45,271   adding 'acellera_htmd-2.6.2.dist-info/licenses/LICENSE'
2026-04-22T10:04:45,273   adding 'htmd/__init__.py'
2026-04-22T10:04:45,275   adding 'htmd/config.py'
2026-04-22T10:04:45,276   adding 'htmd/decorators.py'
2026-04-22T10:04:45,278   adding 'htmd/dock.py'
2026-04-22T10:04:45,279   adding 'htmd/home.py'
2026-04-22T10:04:45,282   adding 'htmd/kinetics.py'
2026-04-22T10:04:45,284   adding 'htmd/latest.py'
2026-04-22T10:04:45,285   adding 'htmd/license.py'
2026-04-22T10:04:45,292   adding 'htmd/metricdata.py'
2026-04-22T10:04:45,294   adding 'htmd/metricdatagenerator.py'
2026-04-22T10:04:45,303   adding 'htmd/model.py'
2026-04-22T10:04:45,305   adding 'htmd/mutualinformation.py'
2026-04-22T10:04:45,307   adding 'htmd/parallelprogress.py'
2026-04-22T10:04:45,309   adding 'htmd/pathplanning.py'
2026-04-22T10:04:45,311   adding 'htmd/session.py'
2026-04-22T10:04:45,314   adding 'htmd/simlist.py'
2026-04-22T10:04:45,315   adding 'htmd/ui.py'
2026-04-22T10:04:45,317   adding 'htmd/units.py'
2026-04-22T10:04:45,318   adding 'htmd/util.py'
2026-04-22T10:04:45,319   adding 'htmd/versionwarnings.py'
2026-04-22T10:04:45,321   adding 'htmd/adaptive/__init__.py'
2026-04-22T10:04:45,324   adding 'htmd/adaptive/adaptive.py'
2026-04-22T10:04:45,327   adding 'htmd/adaptive/adaptivebandit.py'
2026-04-22T10:04:45,329   adding 'htmd/adaptive/adaptivegoal.py'
2026-04-22T10:04:45,332   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-04-22T10:04:45,334   adding 'htmd/adaptive/adaptiverun.py'
2026-04-22T10:04:45,335   adding 'htmd/adaptive/util.py'
2026-04-22T10:04:45,337   adding 'htmd/builder/__init__.py'
2026-04-22T10:04:45,345   adding 'htmd/builder/amber.py'
2026-04-22T10:04:45,348   adding 'htmd/builder/builder.py'
2026-04-22T10:04:45,353   adding 'htmd/builder/charmm.py'
2026-04-22T10:04:45,355   adding 'htmd/builder/ionize.py'
2026-04-22T10:04:45,357   adding 'htmd/builder/loopmodeler.py'
2026-04-22T10:04:45,359   adding 'htmd/builder/noncanonical.py'
2026-04-22T10:04:45,362   adding 'htmd/builder/solvate.py'
2026-04-22T10:04:45,363   adding 'htmd/clustering/__init__.py'
2026-04-22T10:04:45,365   adding 'htmd/clustering/kcenters.py'
2026-04-22T10:04:45,366   adding 'htmd/clustering/regular.py'
2026-04-22T10:04:45,368   adding 'htmd/membranebuilder/__init__.py'
2026-04-22T10:04:45,370   adding 'htmd/membranebuilder/build_membrane.py'
2026-04-22T10:04:45,372   adding 'htmd/membranebuilder/globalminimization.py'
2026-04-22T10:04:45,373   adding 'htmd/membranebuilder/ljfluid.py'
2026-04-22T10:04:45,375   adding 'htmd/membranebuilder/ringpenetration.py'
2026-04-22T10:04:45,376   adding 'htmd/projections/__init__.py'
2026-04-22T10:04:45,378   adding 'htmd/projections/gwpca.py'
2026-04-22T10:04:45,379   adding 'htmd/projections/kmeanstri.py'
2026-04-22T10:04:45,381   adding 'htmd/projections/metric.py'
2026-04-22T10:04:45,383   adding 'htmd/projections/tica.py'
2026-04-22T10:04:45,441   adding 'htmd/share/license-checker'
2026-04-22T10:04:45,472   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-04-22T10:04:45,475   adding 'htmd/share/builder/triala_capped.cif'
2026-04-22T10:04:45,477   adding 'htmd/share/builder/triala_capped.mmtf'
2026-04-22T10:04:45,480   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-04-22T10:04:45,481   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-04-22T10:04:45,483   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-04-22T10:04:45,484   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-04-22T10:04:45,485   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-04-22T10:04:45,487   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-04-22T10:04:45,488   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-04-22T10:04:45,490   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-04-22T10:04:45,491   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-04-22T10:04:45,493   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-04-22T10:04:45,494   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-04-22T10:04:45,496   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-04-22T10:04:45,497   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-04-22T10:04:45,499   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-04-22T10:04:45,500   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-04-22T10:04:45,502   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-04-22T10:04:45,504   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-04-22T10:04:45,506   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-04-22T10:04:45,507   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-04-22T10:04:45,509   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-04-22T10:04:45,510   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-04-22T10:04:45,519   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-04-22T10:04:45,523   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-04-22T10:04:45,524   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-04-22T10:04:45,525   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-04-22T10:04:45,527   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-04-22T10:04:45,528   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-04-22T10:04:45,529   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-04-22T10:04:45,530   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-04-22T10:04:45,532   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-04-22T10:04:45,533   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-04-22T10:04:45,534   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-04-22T10:04:45,535   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-04-22T10:04:45,537   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-04-22T10:04:45,538   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-04-22T10:04:45,539   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-04-22T10:04:45,540   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-04-22T10:04:45,542   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-04-22T10:04:45,543   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-04-22T10:04:45,544   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-04-22T10:04:45,545   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-04-22T10:04:45,547   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-04-22T10:04:45,548   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-04-22T10:04:45,549   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-04-22T10:04:45,550   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-04-22T10:04:45,552   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-04-22T10:04:45,553   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-04-22T10:04:45,554   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-04-22T10:04:45,555   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-04-22T10:04:45,557   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-04-22T10:04:45,558   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-04-22T10:04:45,559   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-04-22T10:04:45,560   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-04-22T10:04:45,562   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-04-22T10:04:45,563   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-04-22T10:04:45,564   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-04-22T10:04:45,566   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-04-22T10:04:45,567   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-04-22T10:04:45,568   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-04-22T10:04:45,570   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-04-22T10:04:45,571   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-04-22T10:04:45,572   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-04-22T10:04:45,573   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-04-22T10:04:45,575   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-04-22T10:04:45,576   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-04-22T10:04:45,578   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-04-22T10:04:45,579   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-04-22T10:04:45,580   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-04-22T10:04:45,581   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-04-22T10:04:45,583   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-04-22T10:04:45,584   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-04-22T10:04:45,585   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-04-22T10:04:45,586   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-04-22T10:04:45,587   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-04-22T10:04:45,588   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-04-22T10:04:45,590   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-04-22T10:04:45,591   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-04-22T10:04:45,592   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-04-22T10:04:45,593   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-04-22T10:04:45,594   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-04-22T10:04:45,595   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-04-22T10:04:45,597   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-04-22T10:04:45,598   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-04-22T10:04:45,599   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-04-22T10:04:45,600   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-04-22T10:04:45,602   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-04-22T10:04:45,603   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-04-22T10:04:45,604   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-04-22T10:04:45,605   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-04-22T10:04:45,607   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-04-22T10:04:45,608   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-04-22T10:04:45,609   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-04-22T10:04:45,610   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-04-22T10:04:45,612   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-04-22T10:04:45,613   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-04-22T10:04:45,614   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-04-22T10:04:45,616   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-04-22T10:04:45,617   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-04-22T10:04:45,618   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-04-22T10:04:45,620   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-04-22T10:04:45,621   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-04-22T10:04:45,622   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-04-22T10:04:45,623   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-04-22T10:04:45,625   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-04-22T10:04:45,626   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-04-22T10:04:45,627   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-04-22T10:04:45,628   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-04-22T10:04:45,630   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-04-22T10:04:45,631   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-04-22T10:04:45,632   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-04-22T10:04:45,634   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-04-22T10:04:45,635   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-04-22T10:04:45,636   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-04-22T10:04:45,638   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-04-22T10:04:45,639   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-04-22T10:04:45,640   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-04-22T10:04:45,641   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-04-22T10:04:45,643   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-04-22T10:04:45,644   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-04-22T10:04:45,645   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-04-22T10:04:45,647   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-04-22T10:04:45,648   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-04-22T10:04:45,649   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-04-22T10:04:45,651   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-04-22T10:04:45,652   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-04-22T10:04:45,653   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-04-22T10:04:45,654   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-04-22T10:04:45,655   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-04-22T10:04:45,657   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-04-22T10:04:45,658   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-04-22T10:04:45,659   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-04-22T10:04:45,660   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-04-22T10:04:45,661   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-04-22T10:04:45,663   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-04-22T10:04:45,664   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-04-22T10:04:45,665   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-04-22T10:04:45,666   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-04-22T10:04:45,668   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-04-22T10:04:45,669   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-04-22T10:04:45,670   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-04-22T10:04:45,672   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-04-22T10:04:45,673   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-04-22T10:04:45,675   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-04-22T10:04:45,676   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-04-22T10:04:45,677   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-04-22T10:04:45,678   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-04-22T10:04:45,680   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-04-22T10:04:45,681   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-04-22T10:04:45,683   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-04-22T10:04:45,684   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-04-22T10:04:45,685   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-04-22T10:04:45,686   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-04-22T10:04:45,688   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-04-22T10:04:45,710   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-04-22T10:04:45,712   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-04-22T10:04:45,714   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-04-22T10:04:45,719   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-04-22T10:04:45,721   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-04-22T10:04:45,723   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-04-22T10:04:45,726   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-04-22T10:04:45,729   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-04-22T10:04:45,730   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-04-22T10:04:45,732   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-04-22T10:04:45,733   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-04-22T10:04:45,734   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-04-22T10:04:45,736   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-04-22T10:04:45,737   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-04-22T10:04:45,738   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-04-22T10:04:45,740   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-04-22T10:04:45,741   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-04-22T10:04:45,742   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-04-22T10:04:45,744   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-04-22T10:04:45,745   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-04-22T10:04:45,746   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-04-22T10:04:45,747   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-04-22T10:04:45,748   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-04-22T10:04:45,750   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-04-22T10:04:45,751   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-04-22T10:04:45,752   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-04-22T10:04:45,753   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-04-22T10:04:45,754   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-04-22T10:04:45,756   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-04-22T10:04:45,757   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-04-22T10:04:45,758   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-04-22T10:04:45,759   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-04-22T10:04:45,761   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-04-22T10:04:45,762   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-04-22T10:04:45,763   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-04-22T10:04:45,764   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-04-22T10:04:45,765   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-04-22T10:04:45,767   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-04-22T10:04:45,768   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-04-22T10:04:45,769   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-04-22T10:04:45,771   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-04-22T10:04:45,772   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-04-22T10:04:45,773   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-04-22T10:04:45,775   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-04-22T10:04:45,776   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-04-22T10:04:45,777   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-04-22T10:04:45,779   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-04-22T10:04:45,780   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-04-22T10:04:45,781   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-04-22T10:04:45,783   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-04-22T10:04:45,784   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-04-22T10:04:45,785   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-04-22T10:04:45,786   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-04-22T10:04:45,788   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-04-22T10:04:45,796   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-04-22T10:04:45,798   adding 'htmd/share/builder/caps/ACE.cif'
2026-04-22T10:04:45,800   adding 'htmd/share/builder/caps/ACE.pdb'
2026-04-22T10:04:45,801   adding 'htmd/share/builder/caps/NHE.pdb'
2026-04-22T10:04:45,802   adding 'htmd/share/builder/caps/NME.cif'
2026-04-22T10:04:45,804   adding 'htmd/share/builder/caps/NME.pdb'
2026-04-22T10:04:45,805   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-04-22T10:04:45,807   adding 'htmd/share/builder/charmmfiles/README.md'
2026-04-22T10:04:45,820   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-04-22T10:04:45,835   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-04-22T10:04:45,838   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-04-22T10:04:45,853   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-04-22T10:04:45,940   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-04-22T10:04:45,949   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-04-22T10:04:45,952   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-04-22T10:04:45,960   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-04-22T10:04:45,975   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-04-22T10:04:45,978   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-04-22T10:04:45,981   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-04-22T10:04:46,056   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-04-22T10:04:46,066   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-04-22T10:04:46,195   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-04-22T10:04:46,222   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-04-22T10:04:46,235   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-04-22T10:04:46,238   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-04-22T10:04:46,276   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-04-22T10:04:46,308   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-04-22T10:04:46,414   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-04-22T10:04:46,420   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-04-22T10:04:46,434   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-04-22T10:04:46,440   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-04-22T10:04:46,532   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-04-22T10:04:46,557   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-04-22T10:04:46,577   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-04-22T10:04:46,668   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-04-22T10:04:46,679   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-04-22T10:04:46,939   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-04-22T10:04:47,056   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-04-22T10:04:47,118   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-04-22T10:04:47,134   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-04-22T10:04:47,142   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-04-22T10:04:47,158   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-04-22T10:04:47,169   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-04-22T10:04:47,177   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-04-22T10:04:47,180   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-04-22T10:04:47,181   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-04-22T10:04:47,183   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-04-22T10:04:47,184   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-04-22T10:04:47,186   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-04-22T10:04:47,199   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-04-22T10:04:47,225   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-04-22T10:04:47,246   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-04-22T10:04:47,252   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-04-22T10:04:47,380   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-04-22T10:04:47,515   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-04-22T10:04:47,525   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-04-22T10:04:47,527   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-04-22T10:04:47,540   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-04-22T10:04:47,565   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-04-22T10:04:47,568   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-04-22T10:04:47,571   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-04-22T10:04:47,574   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-04-22T10:04:47,585   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-04-22T10:04:47,783   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-04-22T10:04:47,804   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-04-22T10:04:47,808   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-04-22T10:04:47,817   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-04-22T10:04:47,826   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-04-22T10:04:47,836   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-04-22T10:04:47,842   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-04-22T10:04:47,868   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-04-22T10:04:48,170   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-04-22T10:04:48,248   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-04-22T10:04:48,298   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-04-22T10:04:48,305   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-04-22T10:04:48,314   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-04-22T10:04:48,316   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-04-22T10:04:48,318   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-04-22T10:04:48,320   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb'
2026-04-22T10:04:48,323   adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb'
2026-04-22T10:04:48,326   adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb'
2026-04-22T10:04:48,613   adding 'htmd/share/solvate/wat.pdb'
2026-04-22T10:04:48,627   adding 'acellera_htmd-2.6.2.dist-info/METADATA'
2026-04-22T10:04:48,628   adding 'acellera_htmd-2.6.2.dist-info/WHEEL'
2026-04-22T10:04:48,629   adding 'acellera_htmd-2.6.2.dist-info/entry_points.txt'
2026-04-22T10:04:48,630   adding 'acellera_htmd-2.6.2.dist-info/top_level.txt'
2026-04-22T10:04:48,635   adding 'acellera_htmd-2.6.2.dist-info/RECORD'
2026-04-22T10:04:48,685   removing build/bdist.linux-armv7l/wheel
2026-04-22T10:04:48,880   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-04-22T10:04:48,968   Created wheel for acellera-htmd: filename=acellera_htmd-2.6.2-py3-none-any.whl size=4269288 sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427
2026-04-22T10:04:48,969   Stored in directory: /tmp/pip-ephem-wheel-cache-_s8r69hu/wheels/61/1b/5f/47bfc3a7569cc170ce59f9a699ba2286c269ca0a47d3c84e54
2026-04-22T10:04:48,992 Successfully built acellera-htmd
2026-04-22T10:04:49,096 Removed build tracker: '/tmp/pip-build-tracker-3quiljxa'