2026-04-22T10:38:52,321 Created temporary directory: /tmp/pip-ephem-wheel-cache-csc53qnz
2026-04-22T10:38:52,322 Created temporary directory: /tmp/pip-build-tracker-6r2gc8vr
2026-04-22T10:38:52,323 Initialized build tracking at /tmp/pip-build-tracker-6r2gc8vr
2026-04-22T10:38:52,324 Created build tracker: /tmp/pip-build-tracker-6r2gc8vr
2026-04-22T10:38:52,324 Entered build tracker: /tmp/pip-build-tracker-6r2gc8vr
2026-04-22T10:38:52,325 Created temporary directory: /tmp/pip-wheel-c0jmvklx
2026-04-22T10:38:52,328 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T10:38:52,330 Created temporary directory: /tmp/pip-ephem-wheel-cache-xgfkhjqb
2026-04-22T10:38:52,354 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T10:38:52,357 2 location(s) to search for versions of pilotpy:
2026-04-22T10:38:52,357 * https://pypi.org/simple/pilotpy/
2026-04-22T10:38:52,357 * https://www.piwheels.org/simple/pilotpy/
2026-04-22T10:38:52,358 Fetching project page and analyzing links: https://pypi.org/simple/pilotpy/
2026-04-22T10:38:52,359 Getting page https://pypi.org/simple/pilotpy/
2026-04-22T10:38:52,360 Found index url https://pypi.org/simple
2026-04-22T10:38:52,588 Fetched page https://pypi.org/simple/pilotpy/ as application/vnd.pypi.simple.v1+json
2026-04-22T10:38:52,590   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/53/cb/57c2d519de7d8e39d820dacda879e3a5b714806fb5581e8c85292b772d2d/pilotpy-2.0.6-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T10:38:52,591   Link requires a different Python (3.11.2 not in: '==3.11.5'): https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T10:38:52,592   Skipping link: 2.0.6 Requires-Python ==3.11.5: https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T10:38:52,592   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/2d/b4/b280fe57ece1b9f1cca5b9fb0659f32731a635836d98a1440341b9a023ef/pilotpy-2.0.7-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T10:38:52,593   Link requires a different Python (3.11.2 not in: '>=3.14.3'): https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T10:38:52,594   Skipping link: 2.0.7 Requires-Python >=3.14.3: https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T10:38:52,595   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/86/71/f5552dbb8a0e33ca2a3668633cb8ea654f482610ba45d09df64592735f68/pilotpy-2.0.8-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-04-22T10:38:52,596   Found link https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.8
2026-04-22T10:38:52,596 Fetching project page and analyzing links: https://www.piwheels.org/simple/pilotpy/
2026-04-22T10:38:52,597 Getting page https://www.piwheels.org/simple/pilotpy/
2026-04-22T10:38:52,598 Found index url https://www.piwheels.org/simple
2026-04-22T10:38:52,768 Fetched page https://www.piwheels.org/simple/pilotpy/ as text/html
2026-04-22T10:38:52,769 Skipping link: not a file: https://www.piwheels.org/simple/pilotpy/
2026-04-22T10:38:52,769 Skipping link: not a file: https://pypi.org/simple/pilotpy/
2026-04-22T10:38:52,790 Given no hashes to check 1 links for project 'pilotpy': discarding no candidates
2026-04-22T10:38:52,809 Collecting pilotpy==2.0.8
2026-04-22T10:38:52,811   Created temporary directory: /tmp/pip-unpack-8xeurgml
2026-04-22T10:38:53,126   Downloading pilotpy-2.0.8.tar.gz (70 kB)
2026-04-22T10:38:53,253   Added pilotpy==2.0.8 from https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-6r2gc8vr'
2026-04-22T10:38:53,255   Running setup.py (path:/tmp/pip-wheel-c0jmvklx/pilotpy_37e5efd5033347ffb0675bd896dcd88b/setup.py) egg_info for package pilotpy
2026-04-22T10:38:53,255   Created temporary directory: /tmp/pip-pip-egg-info-bk67hpze
2026-04-22T10:38:53,256   Preparing metadata (setup.py): started
2026-04-22T10:38:53,257   Running command python setup.py egg_info
2026-04-22T10:38:54,193   running egg_info
2026-04-22T10:38:54,220   creating /tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info
2026-04-22T10:38:54,222   writing /tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/PKG-INFO
2026-04-22T10:38:54,226   writing dependency_links to /tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/dependency_links.txt
2026-04-22T10:38:54,228   writing requirements to /tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/requires.txt
2026-04-22T10:38:54,230   writing top-level names to /tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/top_level.txt
2026-04-22T10:38:54,232   writing manifest file '/tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/SOURCES.txt'
2026-04-22T10:38:54,325   reading manifest file '/tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/SOURCES.txt'
2026-04-22T10:38:54,327   adding license file 'LICENSE'
2026-04-22T10:38:54,331   writing manifest file '/tmp/pip-pip-egg-info-bk67hpze/pilotpy.egg-info/SOURCES.txt'
2026-04-22T10:38:54,439   Preparing metadata (setup.py): finished with status 'done'
2026-04-22T10:38:54,443   Source in /tmp/pip-wheel-c0jmvklx/pilotpy_37e5efd5033347ffb0675bd896dcd88b has version 2.0.8, which satisfies requirement pilotpy==2.0.8 from https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz
2026-04-22T10:38:54,444   Removed pilotpy==2.0.8 from https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-6r2gc8vr'
2026-04-22T10:38:54,450 Created temporary directory: /tmp/pip-unpack-1r891rw1
2026-04-22T10:38:54,451 Building wheels for collected packages: pilotpy
2026-04-22T10:38:54,456   Created temporary directory: /tmp/pip-wheel-3whp4gko
2026-04-22T10:38:54,457   Building wheel for pilotpy (setup.py): started
2026-04-22T10:38:54,458   Destination directory: /tmp/pip-wheel-3whp4gko
2026-04-22T10:38:54,459   Running command python setup.py bdist_wheel
2026-04-22T10:38:55,294   running bdist_wheel
2026-04-22T10:38:55,424   running build
2026-04-22T10:38:55,424   running build_py
2026-04-22T10:38:55,457   creating build/lib/pilotpy
2026-04-22T10:38:55,460   copying pilotpy/pl.py -> build/lib/pilotpy
2026-04-22T10:38:55,462   copying pilotpy/tl.py -> build/lib/pilotpy
2026-04-22T10:38:55,464   copying pilotpy/__init__.py -> build/lib/pilotpy
2026-04-22T10:38:55,467   creating build/lib/pilotpy/plot
2026-04-22T10:38:55,468   copying pilotpy/plot/pseudobulk_DE_analysis.py -> build/lib/pilotpy/plot
2026-04-22T10:38:55,471   copying pilotpy/plot/curve_activity.py -> build/lib/pilotpy/plot
2026-04-22T10:38:55,473   copying pilotpy/plot/ploting.py -> build/lib/pilotpy/plot
2026-04-22T10:38:55,477   copying pilotpy/plot/gene_selection_analysis.py -> build/lib/pilotpy/plot
2026-04-22T10:38:55,480   copying pilotpy/plot/__init__.py -> build/lib/pilotpy/plot
2026-04-22T10:38:55,482   creating build/lib/pilotpy/tools
2026-04-22T10:38:55,483   copying pilotpy/tools/Cell_gene_selection.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,486   copying pilotpy/tools/Gene_cluster_specific_functions.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,489   copying pilotpy/tools/Trajectory.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,492   copying pilotpy/tools/patients_sub_clustering.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,495   copying pilotpy/tools/Gene_cluster_specific.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,497   copying pilotpy/tools/__init__.py -> build/lib/pilotpy/tools
2026-04-22T10:38:55,529   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-04-22T10:38:55,530   !!

2026-04-22T10:38:55,531           ********************************************************************************
2026-04-22T10:38:55,531           Please avoid running ``setup.py`` directly.
2026-04-22T10:38:55,531           Instead, use pypa/build, pypa/installer or other
2026-04-22T10:38:55,532           standards-based tools.

2026-04-22T10:38:55,533           This deprecation is overdue, please update your project and remove deprecated
2026-04-22T10:38:55,533           calls to avoid build errors in the future.

2026-04-22T10:38:55,534           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-04-22T10:38:55,535           ********************************************************************************

2026-04-22T10:38:55,536   !!
2026-04-22T10:38:55,536     self.initialize_options()
2026-04-22T10:38:55,558   installing to build/bdist.linux-armv7l/wheel
2026-04-22T10:38:55,558   running install
2026-04-22T10:38:55,582   running install_lib
2026-04-22T10:38:55,609   creating build/bdist.linux-armv7l/wheel
2026-04-22T10:38:55,611   creating build/bdist.linux-armv7l/wheel/pilotpy
2026-04-22T10:38:55,612   copying build/lib/pilotpy/pl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T10:38:55,614   creating build/bdist.linux-armv7l/wheel/pilotpy/plot
2026-04-22T10:38:55,615   copying build/lib/pilotpy/plot/pseudobulk_DE_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T10:38:55,618   copying build/lib/pilotpy/plot/curve_activity.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T10:38:55,620   copying build/lib/pilotpy/plot/ploting.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T10:38:55,624   copying build/lib/pilotpy/plot/gene_selection_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T10:38:55,627   copying build/lib/pilotpy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T10:38:55,629   creating build/bdist.linux-armv7l/wheel/pilotpy/tools
2026-04-22T10:38:55,630   copying build/lib/pilotpy/tools/Cell_gene_selection.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,633   copying build/lib/pilotpy/tools/Gene_cluster_specific_functions.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,635   copying build/lib/pilotpy/tools/Trajectory.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,639   copying build/lib/pilotpy/tools/patients_sub_clustering.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,641   copying build/lib/pilotpy/tools/Gene_cluster_specific.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,643   copying build/lib/pilotpy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T10:38:55,645   copying build/lib/pilotpy/tl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T10:38:55,647   copying build/lib/pilotpy/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T10:38:55,648   running install_egg_info
2026-04-22T10:38:55,682   running egg_info
2026-04-22T10:38:55,708   writing pilotpy.egg-info/PKG-INFO
2026-04-22T10:38:55,711   writing dependency_links to pilotpy.egg-info/dependency_links.txt
2026-04-22T10:38:55,713   writing requirements to pilotpy.egg-info/requires.txt
2026-04-22T10:38:55,715   writing top-level names to pilotpy.egg-info/top_level.txt
2026-04-22T10:38:55,745   reading manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-04-22T10:38:55,748   adding license file 'LICENSE'
2026-04-22T10:38:55,751   writing manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-04-22T10:38:55,752   Copying pilotpy.egg-info to build/bdist.linux-armv7l/wheel/./pilotpy-2.0.8-py3.11.egg-info
2026-04-22T10:38:55,760   running install_scripts
2026-04-22T10:38:55,770   creating build/bdist.linux-armv7l/wheel/pilotpy-2.0.8.dist-info/WHEEL
2026-04-22T10:38:55,772   creating '/tmp/pip-wheel-3whp4gko/pilotpy-2.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-22T10:38:55,774   adding 'pilotpy/__init__.py'
2026-04-22T10:38:55,775   adding 'pilotpy/pl.py'
2026-04-22T10:38:55,776   adding 'pilotpy/tl.py'
2026-04-22T10:38:55,778   adding 'pilotpy/plot/__init__.py'
2026-04-22T10:38:55,779   adding 'pilotpy/plot/curve_activity.py'
2026-04-22T10:38:55,784   adding 'pilotpy/plot/gene_selection_analysis.py'
2026-04-22T10:38:55,794   adding 'pilotpy/plot/ploting.py'
2026-04-22T10:38:55,798   adding 'pilotpy/plot/pseudobulk_DE_analysis.py'
2026-04-22T10:38:55,802   adding 'pilotpy/tools/Cell_gene_selection.py'
2026-04-22T10:38:55,804   adding 'pilotpy/tools/Gene_cluster_specific.py'
2026-04-22T10:38:55,807   adding 'pilotpy/tools/Gene_cluster_specific_functions.py'
2026-04-22T10:38:55,814   adding 'pilotpy/tools/Trajectory.py'
2026-04-22T10:38:55,816   adding 'pilotpy/tools/__init__.py'
2026-04-22T10:38:55,818   adding 'pilotpy/tools/patients_sub_clustering.py'
2026-04-22T10:38:55,821   adding 'pilotpy-2.0.8.dist-info/licenses/LICENSE'
2026-04-22T10:38:55,823   adding 'pilotpy-2.0.8.dist-info/METADATA'
2026-04-22T10:38:55,824   adding 'pilotpy-2.0.8.dist-info/WHEEL'
2026-04-22T10:38:55,825   adding 'pilotpy-2.0.8.dist-info/top_level.txt'
2026-04-22T10:38:55,826   adding 'pilotpy-2.0.8.dist-info/RECORD'
2026-04-22T10:38:55,829   removing build/bdist.linux-armv7l/wheel
2026-04-22T10:38:55,962   Building wheel for pilotpy (setup.py): finished with status 'done'
2026-04-22T10:38:55,966   Created wheel for pilotpy: filename=pilotpy-2.0.8-py3-none-any.whl size=73833 sha256=b6401ab4d888e85593008a2ab52cede509be8d14869c8c311a0253f024da6c72
2026-04-22T10:38:55,967   Stored in directory: /tmp/pip-ephem-wheel-cache-xgfkhjqb/wheels/01/4b/6f/cfb565d2602c083905b1539ff5ffae408df42c5c0bbe831a48
2026-04-22T10:38:55,977 Successfully built pilotpy
2026-04-22T10:38:55,981 Removed build tracker: '/tmp/pip-build-tracker-6r2gc8vr'