2026-04-22T12:10:55,536 Created temporary directory: /tmp/pip-ephem-wheel-cache-nocjvjxl
2026-04-22T12:10:55,538 Created temporary directory: /tmp/pip-build-tracker-5cidvu7k
2026-04-22T12:10:55,538 Initialized build tracking at /tmp/pip-build-tracker-5cidvu7k
2026-04-22T12:10:55,539 Created build tracker: /tmp/pip-build-tracker-5cidvu7k
2026-04-22T12:10:55,539 Entered build tracker: /tmp/pip-build-tracker-5cidvu7k
2026-04-22T12:10:55,540 Created temporary directory: /tmp/pip-wheel-fpanas0y
2026-04-22T12:10:55,543 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T12:10:55,545 Created temporary directory: /tmp/pip-ephem-wheel-cache-l4p040zm
2026-04-22T12:10:55,567 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T12:10:55,570 2 location(s) to search for versions of acellera-htmd:
2026-04-22T12:10:55,570 * https://pypi.org/simple/acellera-htmd/
2026-04-22T12:10:55,570 * https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T12:10:55,571 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2026-04-22T12:10:55,572 Getting page https://pypi.org/simple/acellera-htmd/
2026-04-22T12:10:55,573 Found index url https://pypi.org/simple
2026-04-22T12:10:55,802 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json
2026-04-22T12:10:55,805   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2026-04-22T12:10:55,806   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2026-04-22T12:10:55,807   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2026-04-22T12:10:55,807   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2026-04-22T12:10:55,808   Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8
2026-04-22T12:10:55,809   Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9
2026-04-22T12:10:55,810   Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0
2026-04-22T12:10:55,811   Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1
2026-04-22T12:10:55,812   Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2
2026-04-22T12:10:55,813   Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3
2026-04-22T12:10:55,814   Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4
2026-04-22T12:10:55,815 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T12:10:55,816 Getting page https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T12:10:55,817 Found index url https://www.piwheels.org/simple
2026-04-22T12:10:55,995 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html
2026-04-22T12:10:55,998   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T12:10:55,999   Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T12:10:55,999   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T12:10:56,000   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T12:10:56,000   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10)
2026-04-22T12:10:56,001   Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/)
2026-04-22T12:10:56,001 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/
2026-04-22T12:10:56,002 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/
2026-04-22T12:10:56,024 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2026-04-22T12:10:56,043 Collecting acellera-htmd==2.6.3
2026-04-22T12:10:56,045   Created temporary directory: /tmp/pip-unpack-p6ryukxt
2026-04-22T12:10:56,623   Downloading acellera_htmd-2.6.3.tar.gz (4.0 MB)
2026-04-22T12:10:58,946   Added acellera-htmd==2.6.3 from https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-5cidvu7k'
2026-04-22T12:10:58,952   Created temporary directory: /tmp/pip-build-env-954wd3ml
2026-04-22T12:10:58,957   Installing build dependencies: started
2026-04-22T12:10:58,958   Running command pip subprocess to install build dependencies
2026-04-22T12:11:00,179   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-22T12:11:00,636   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T12:11:00,662   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T12:11:02,431   Collecting setuptools
2026-04-22T12:11:02,507     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-22T12:11:02,887   Collecting setuptools-scm>=8
2026-04-22T12:11:02,903     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-04-22T12:11:02,985   Collecting vcs-versioning>=1.0.0.dev0
2026-04-22T12:11:03,004     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-04-22T12:11:03,185   Collecting packaging>=20
2026-04-22T12:11:03,203     Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB)
2026-04-22T12:11:06,186   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-04-22T12:11:09,750     Creating /tmp/pip-build-env-954wd3ml/overlay/local/bin
2026-04-22T12:11:09,753     changing mode of /tmp/pip-build-env-954wd3ml/overlay/local/bin/vcs-versioning to 755
2026-04-22T12:11:09,860     changing mode of /tmp/pip-build-env-954wd3ml/overlay/local/bin/setuptools-scm to 755
2026-04-22T12:11:09,888   Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-04-22T12:11:10,187   Installing build dependencies: finished with status 'done'
2026-04-22T12:11:10,193   Getting requirements to build wheel: started
2026-04-22T12:11:10,194   Running command Getting requirements to build wheel
2026-04-22T12:11:10,981   running egg_info
2026-04-22T12:11:10,988   writing acellera_htmd.egg-info/PKG-INFO
2026-04-22T12:11:10,993   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-22T12:11:10,995   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-22T12:11:10,999   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-22T12:11:11,000   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-22T12:11:11,086   /tmp/pip-build-env-954wd3ml/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T12:11:11,086     return get_active_overrides().subprocess_timeout
2026-04-22T12:11:11,093   listing git files failed - pretending there aren't any
2026-04-22T12:11:11,098   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:11,118   reading manifest template 'MANIFEST.in'
2026-04-22T12:11:11,136   no previously-included directories found matching 'htmd/data'
2026-04-22T12:11:11,137   no previously-included directories found matching '.github'
2026-04-22T12:11:11,139   no previously-included directories found matching 'doc'
2026-04-22T12:11:11,140   no previously-included directories found matching 'package'
2026-04-22T12:11:11,141   no previously-included directories found matching 'tests'
2026-04-22T12:11:11,142   no previously-included directories found matching 'tutorials'
2026-04-22T12:11:11,143   warning: no previously-included files found matching 'Makefile'
2026-04-22T12:11:11,144   adding license file 'LICENSE'
2026-04-22T12:11:11,166   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:11,270   Getting requirements to build wheel: finished with status 'done'
2026-04-22T12:11:11,274   Created temporary directory: /tmp/pip-modern-metadata-l1arkh8p
2026-04-22T12:11:11,276   Preparing metadata (pyproject.toml): started
2026-04-22T12:11:11,278   Running command Preparing metadata (pyproject.toml)
2026-04-22T12:11:12,030   running dist_info
2026-04-22T12:11:12,044   creating /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info
2026-04-22T12:11:12,044   writing /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/PKG-INFO
2026-04-22T12:11:12,049   writing dependency_links to /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/dependency_links.txt
2026-04-22T12:11:12,051   writing entry points to /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/entry_points.txt
2026-04-22T12:11:12,055   writing requirements to /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/requires.txt
2026-04-22T12:11:12,056   writing top-level names to /tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/top_level.txt
2026-04-22T12:11:12,057   writing manifest file '/tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:12,129   /tmp/pip-build-env-954wd3ml/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T12:11:12,130     return get_active_overrides().subprocess_timeout
2026-04-22T12:11:12,136   listing git files failed - pretending there aren't any
2026-04-22T12:11:12,140   reading manifest file '/tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:12,142   reading manifest template 'MANIFEST.in'
2026-04-22T12:11:12,160   no previously-included directories found matching 'htmd/data'
2026-04-22T12:11:12,161   no previously-included directories found matching '.github'
2026-04-22T12:11:12,162   no previously-included directories found matching 'doc'
2026-04-22T12:11:12,163   no previously-included directories found matching 'package'
2026-04-22T12:11:12,164   no previously-included directories found matching 'tests'
2026-04-22T12:11:12,164   no previously-included directories found matching 'tutorials'
2026-04-22T12:11:12,165   warning: no previously-included files found matching 'Makefile'
2026-04-22T12:11:12,166   adding license file 'LICENSE'
2026-04-22T12:11:12,183   writing manifest file '/tmp/pip-modern-metadata-l1arkh8p/acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:12,184   creating '/tmp/pip-modern-metadata-l1arkh8p/acellera_htmd-2.6.3.dist-info'
2026-04-22T12:11:12,316   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-22T12:11:12,321   Source in /tmp/pip-wheel-fpanas0y/acellera-htmd_b659826ecc9742cfb2128c338810f2f6 has version 2.6.3, which satisfies requirement acellera-htmd==2.6.3 from https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz
2026-04-22T12:11:12,322   Removed acellera-htmd==2.6.3 from https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-5cidvu7k'
2026-04-22T12:11:12,327 Created temporary directory: /tmp/pip-unpack-5t6gp3de
2026-04-22T12:11:12,328 Building wheels for collected packages: acellera-htmd
2026-04-22T12:11:12,332   Created temporary directory: /tmp/pip-wheel-uxpbpf0v
2026-04-22T12:11:12,333   Destination directory: /tmp/pip-wheel-uxpbpf0v
2026-04-22T12:11:12,335   Building wheel for acellera-htmd (pyproject.toml): started
2026-04-22T12:11:12,336   Running command Building wheel for acellera-htmd (pyproject.toml)
2026-04-22T12:11:13,043   running bdist_wheel
2026-04-22T12:11:13,068   running build
2026-04-22T12:11:13,069   running build_py
2026-04-22T12:11:13,071   creating build/lib/htmd
2026-04-22T12:11:13,074   copying htmd/parallelprogress.py -> build/lib/htmd
2026-04-22T12:11:13,076   copying htmd/home.py -> build/lib/htmd
2026-04-22T12:11:13,078   copying htmd/metricdatagenerator.py -> build/lib/htmd
2026-04-22T12:11:13,081   copying htmd/config.py -> build/lib/htmd
2026-04-22T12:11:13,083   copying htmd/simlist.py -> build/lib/htmd
2026-04-22T12:11:13,087   copying htmd/pathplanning.py -> build/lib/htmd
2026-04-22T12:11:13,090   copying htmd/dock.py -> build/lib/htmd
2026-04-22T12:11:13,092   copying htmd/units.py -> build/lib/htmd
2026-04-22T12:11:13,094   copying htmd/decorators.py -> build/lib/htmd
2026-04-22T12:11:13,097   copying htmd/license.py -> build/lib/htmd
2026-04-22T12:11:13,099   copying htmd/__init__.py -> build/lib/htmd
2026-04-22T12:11:13,101   copying htmd/ui.py -> build/lib/htmd
2026-04-22T12:11:13,103   copying htmd/latest.py -> build/lib/htmd
2026-04-22T12:11:13,106   copying htmd/session.py -> build/lib/htmd
2026-04-22T12:11:13,108   copying htmd/metricdata.py -> build/lib/htmd
2026-04-22T12:11:13,111   copying htmd/mutualinformation.py -> build/lib/htmd
2026-04-22T12:11:13,114   copying htmd/model.py -> build/lib/htmd
2026-04-22T12:11:13,118   copying htmd/kinetics.py -> build/lib/htmd
2026-04-22T12:11:13,121   copying htmd/util.py -> build/lib/htmd
2026-04-22T12:11:13,123   copying htmd/versionwarnings.py -> build/lib/htmd
2026-04-22T12:11:13,126   creating build/lib/htmd/projections
2026-04-22T12:11:13,127   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2026-04-22T12:11:13,130   copying htmd/projections/metric.py -> build/lib/htmd/projections
2026-04-22T12:11:13,132   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2026-04-22T12:11:13,134   copying htmd/projections/tica.py -> build/lib/htmd/projections
2026-04-22T12:11:13,137   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2026-04-22T12:11:13,139   creating build/lib/htmd/clustering
2026-04-22T12:11:13,141   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2026-04-22T12:11:13,143   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2026-04-22T12:11:13,145   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2026-04-22T12:11:13,148   creating build/lib/htmd/builder
2026-04-22T12:11:13,150   copying htmd/builder/noncanonical.py -> build/lib/htmd/builder
2026-04-22T12:11:13,153   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2026-04-22T12:11:13,155   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2026-04-22T12:11:13,158   copying htmd/builder/amber.py -> build/lib/htmd/builder
2026-04-22T12:11:13,162   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2026-04-22T12:11:13,165   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2026-04-22T12:11:13,167   copying htmd/builder/builder.py -> build/lib/htmd/builder
2026-04-22T12:11:13,170   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2026-04-22T12:11:13,174   creating build/lib/htmd/adaptive
2026-04-22T12:11:13,175   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,178   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,181   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,184   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,186   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,189   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,192   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2026-04-22T12:11:13,194   creating build/lib/htmd/membranebuilder
2026-04-22T12:11:13,196   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2026-04-22T12:11:13,199   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2026-04-22T12:11:13,201   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2026-04-22T12:11:13,203   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2026-04-22T12:11:13,206   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2026-04-22T12:11:13,240   creating build/lib/htmd/share
2026-04-22T12:11:13,241   copying htmd/share/license-checker -> build/lib/htmd/share
2026-04-22T12:11:13,252   creating build/lib/htmd/share/builder
2026-04-22T12:11:13,253   copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder
2026-04-22T12:11:13,261   copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder
2026-04-22T12:11:13,264   copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder
2026-04-22T12:11:13,266   creating build/lib/htmd/share/builder/charmmfiles
2026-04-22T12:11:13,268   copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles
2026-04-22T12:11:13,270   copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles
2026-04-22T12:11:13,273   creating build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,274   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,280   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,284   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,290   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,295   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,300   copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,303   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,324   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,327   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,329   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:13,333   creating build/lib/htmd/share/builder/charmmfiles/str
2026-04-22T12:11:13,334   copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str
2026-04-22T12:11:13,337   creating build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,338   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,361   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,366   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,385   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,389   copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:13,392   creating build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,393   copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,396   copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,398   copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,401   copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,403   copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:13,405   creating build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,406   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,409   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,414   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,438   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,456   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,490   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,494   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,502   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,515   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,523   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,526   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,532   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,541   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,544   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,546   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,562   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,567   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,572   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,576   copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:13,603   creating build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T12:11:13,604   copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T12:11:13,607   creating build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,608   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,652   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,656   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,664   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,671   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,675   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,681   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,687   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,691   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,695   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,698   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,704   copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:13,707   creating build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,709   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,716   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,744   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,778   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,786   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,790   copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:13,798   creating build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,799   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,803   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,840   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,846   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,858   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,861   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,864   copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,873   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,877   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,881   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:13,885   creating build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,886   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,888   copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,891   copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,893   copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,896   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,898   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,902   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,904   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,906   copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,908   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,910   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,912   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,914   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,916   copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,918   copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,921   copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,923   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,925   copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,927   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,930   copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,932   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,934   copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:13,936   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,937   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,940   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,943   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,945   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,947   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,950   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:13,953   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,954   copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,957   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,959   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,961   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,963   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,968   copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,970   copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,972   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,974   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,976   copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,978   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,980   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,982   copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,984   copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,986   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,988   copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,991   copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,993   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,995   copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,997   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:13,999   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,001   copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,003   copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,005   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,008   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,010   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,012   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,014   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,016   copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,018   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,021   copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,023   copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,025   copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,028   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,030   copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,032   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,035   copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,037   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,039   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,041   copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,043   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,045   copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,047   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,049   copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,051   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,053   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,056   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,058   copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:14,060   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,061   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,064   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,067   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,069   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,071   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,073   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,075   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,077   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,079   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,081   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,084   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,086   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,088   copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,090   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,092   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,095   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,097   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,100   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,102   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,104   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,107   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,110   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,112   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,114   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,116   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,118   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,120   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,122   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,124   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,127   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,129   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,131   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,133   copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,135   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,137   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,139   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,142   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,145   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,147   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,150   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,153   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,156   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,158   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,160   copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,162   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,164   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,166   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,169   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,171   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,173   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,175   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,177   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,179   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,182   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,184   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,186   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,188   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,190   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,192   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,194   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,197   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,199   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,201   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,203   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,205   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,208   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,210   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,212   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,214   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,216   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,219   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,221   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,223   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,225   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,227   copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,230   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,232   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,234   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,236   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,239   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,241   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,243   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,245   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,247   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,249   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,254   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,256   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,258   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,260   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,262   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,264   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,266   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,268   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,270   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,272   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,275   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,277   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,279   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,281   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,283   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,285   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,287   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,290   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,292   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,294   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,296   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,299   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,301   copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,303   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,306   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,308   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,311   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,313   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,315   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,317   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,319   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,321   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,323   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,325   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,327   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,329   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,331   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,333   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,335   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,337   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,340   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,342   copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,344   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,346   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,348   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,351   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,353   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:14,355   creating build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,356   copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,358   copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,360   copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,362   copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,364   copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps
2026-04-22T12:11:14,367   creating build/lib/htmd/share/solvate
2026-04-22T12:11:14,368   copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate
2026-04-22T12:11:14,399   creating build/lib/htmd/share/membranebuilder/lipids
2026-04-22T12:11:14,400   copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids
2026-04-22T12:11:14,403   creating build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-22T12:11:14,404   copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope
2026-04-22T12:11:14,406   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-22T12:11:14,407   copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1
2026-04-22T12:11:14,410   creating build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-22T12:11:14,411   copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc
2026-04-22T12:11:14,430   installing to build/bdist.linux-armv7l/wheel
2026-04-22T12:11:14,431   running install
2026-04-22T12:11:14,454   running install_lib
2026-04-22T12:11:14,462   creating build/bdist.linux-armv7l/wheel
2026-04-22T12:11:14,464   creating build/bdist.linux-armv7l/wheel/htmd
2026-04-22T12:11:14,466   creating build/bdist.linux-armv7l/wheel/htmd/projections
2026-04-22T12:11:14,467   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T12:11:14,469   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T12:11:14,472   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T12:11:14,474   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T12:11:14,476   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections
2026-04-22T12:11:14,478   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,480   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,481   copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,484   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,486   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,488   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,491   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2026-04-22T12:11:14,492   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T12:11:14,494   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T12:11:14,496   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering
2026-04-22T12:11:14,499   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,501   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,503   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,505   creating build/bdist.linux-armv7l/wheel/htmd/builder
2026-04-22T12:11:14,506   copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,509   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,511   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,514   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,517   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,520   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,522   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,524   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder
2026-04-22T12:11:14,527   copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,530   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2026-04-22T12:11:14,531   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,534   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,536   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,539   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,541   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,543   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,546   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive
2026-04-22T12:11:14,548   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:14,550   creating build/bdist.linux-armv7l/wheel/htmd/share
2026-04-22T12:11:14,552   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2026-04-22T12:11:14,554   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2026-04-22T12:11:14,555   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,557   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,563   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,566   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,571   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,576   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,581   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,584   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,601   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,603   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,606   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par
2026-04-22T12:11:14,609   copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-22T12:11:14,611   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str
2026-04-22T12:11:14,612   copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str
2026-04-22T12:11:14,615   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,616   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,640   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,645   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,663   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,668   copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb
2026-04-22T12:11:14,671   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,672   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,675   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,677   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,679   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,681   copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc
2026-04-22T12:11:14,684   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,685   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,687   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,692   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,726   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,749   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,782   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,786   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,794   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,806   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,813   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,816   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,821   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,829   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,832   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,834   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,930   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,934   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,939   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,942   copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid
2026-04-22T12:11:14,968   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T12:11:14,969   copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd
2026-04-22T12:11:14,972   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:14,973   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,003   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,006   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,012   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,016   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,019   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,022   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,026   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,029   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,031   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,034   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,037   copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot
2026-04-22T12:11:15,041   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,042   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,047   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,066   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,088   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,093   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,095   copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na
2026-04-22T12:11:15,101   copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles
2026-04-22T12:11:15,104   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,105   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,108   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,160   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,166   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,178   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,181   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,183   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,192   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,195   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,199   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top
2026-04-22T12:11:15,203   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2026-04-22T12:11:15,205   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,206   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,209   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,212   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,215   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,218   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,221   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,224   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,227   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,230   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,233   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,235   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,238   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,240   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,243   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,245   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,248   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,251   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,253   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,256   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,259   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,262   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,265   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors
2026-04-22T12:11:15,268   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,270   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,273   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,276   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,279   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,281   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,284   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15
2026-04-22T12:11:15,290   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,292   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,294   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,297   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,299   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,301   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,306   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,308   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,310   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,312   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,313   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,315   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,317   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,319   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,321   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,323   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,325   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,327   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,329   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,330   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,332   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,334   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,336   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,338   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,340   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,342   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,343   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,345   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,347   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,349   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,350   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,352   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,354   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,356   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,358   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,360   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,362   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,363   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,365   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,367   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,369   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,371   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,373   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,375   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,376   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,378   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,380   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,382   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,384   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm
2026-04-22T12:11:15,389   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,390   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,392   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,394   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,396   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,397   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,399   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,401   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,403   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,404   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,406   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,408   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,410   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,412   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,414   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,415   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,417   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,419   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,421   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,423   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,425   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,426   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,428   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,430   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,432   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,434   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,436   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,438   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,439   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,441   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,443   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,444   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,446   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,448   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,449   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,451   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,453   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,454   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,456   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,458   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,460   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,462   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,464   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,465   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,467   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,469   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,471   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,472   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,474   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,476   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,478   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,480   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,481   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,483   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,485   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,487   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,489   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,490   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,492   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,494   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,495   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,497   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,499   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,501   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,502   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,504   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,506   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,508   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,510   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,511   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,513   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,515   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,517   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,519   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,520   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,522   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,524   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,526   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,528   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,529   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,531   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,533   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,534   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,536   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,538   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,540   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,544   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,546   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,547   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,549   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,551   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,553   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,555   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,556   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,558   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,560   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,562   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,564   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,566   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,567   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,569   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,571   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,573   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,574   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,576   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,578   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,580   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,582   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,583   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,585   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,587   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,589   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,591   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,593   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,595   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,596   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,598   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,600   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,602   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,603   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,605   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,607   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,609   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,611   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,613   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,614   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,616   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,618   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,620   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,622   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,623   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,625   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,627   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa
2026-04-22T12:11:15,629   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps
2026-04-22T12:11:15,630   copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T12:11:15,632   copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T12:11:15,634   copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T12:11:15,636   copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T12:11:15,637   copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps
2026-04-22T12:11:15,639   copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T12:11:15,645   copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T12:11:15,647   copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder
2026-04-22T12:11:15,649   copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share
2026-04-22T12:11:15,656   creating build/bdist.linux-armv7l/wheel/htmd/share/solvate
2026-04-22T12:11:15,657   copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate
2026-04-22T12:11:15,695   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2026-04-22T12:11:15,697   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2026-04-22T12:11:15,699   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2026-04-22T12:11:15,700   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope
2026-04-22T12:11:15,702   copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids
2026-04-22T12:11:15,705   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2026-04-22T12:11:15,706   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1
2026-04-22T12:11:15,709   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2026-04-22T12:11:15,710   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc
2026-04-22T12:11:15,712   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,714   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,716   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,718   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,722   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,724   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,727   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,730   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,732   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd
2026-04-22T12:11:15,734   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2026-04-22T12:11:15,735   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T12:11:15,738   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T12:11:15,740   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T12:11:15,742   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T12:11:15,744   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder
2026-04-22T12:11:15,746   running install_egg_info
2026-04-22T12:11:15,759   running egg_info
2026-04-22T12:11:15,766   writing acellera_htmd.egg-info/PKG-INFO
2026-04-22T12:11:15,770   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2026-04-22T12:11:15,772   writing entry points to acellera_htmd.egg-info/entry_points.txt
2026-04-22T12:11:15,775   writing requirements to acellera_htmd.egg-info/requires.txt
2026-04-22T12:11:15,776   writing top-level names to acellera_htmd.egg-info/top_level.txt
2026-04-22T12:11:15,842   /tmp/pip-build-env-954wd3ml/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-22T12:11:15,842     return get_active_overrides().subprocess_timeout
2026-04-22T12:11:15,849   listing git files failed - pretending there aren't any
2026-04-22T12:11:15,853   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:15,873   reading manifest template 'MANIFEST.in'
2026-04-22T12:11:15,892   no previously-included directories found matching 'htmd/data'
2026-04-22T12:11:15,893   no previously-included directories found matching '.github'
2026-04-22T12:11:15,895   no previously-included directories found matching 'doc'
2026-04-22T12:11:15,896   no previously-included directories found matching 'package'
2026-04-22T12:11:15,898   no previously-included directories found matching 'tests'
2026-04-22T12:11:15,899   no previously-included directories found matching 'tutorials'
2026-04-22T12:11:15,901   warning: no previously-included files found matching 'Makefile'
2026-04-22T12:11:15,901   adding license file 'LICENSE'
2026-04-22T12:11:15,923   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2026-04-22T12:11:15,926   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.3-py3.11.egg-info
2026-04-22T12:11:15,937   running install_scripts
2026-04-22T12:11:15,949   creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.3.dist-info/WHEEL
2026-04-22T12:11:15,952   creating '/tmp/pip-wheel-uxpbpf0v/.tmp-ohgfxh25/acellera_htmd-2.6.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-22T12:11:15,955   adding 'acellera_htmd-2.6.3.dist-info/licenses/LICENSE'
2026-04-22T12:11:15,958   adding 'htmd/__init__.py'
2026-04-22T12:11:15,959   adding 'htmd/config.py'
2026-04-22T12:11:15,961   adding 'htmd/decorators.py'
2026-04-22T12:11:15,963   adding 'htmd/dock.py'
2026-04-22T12:11:15,964   adding 'htmd/home.py'
2026-04-22T12:11:15,967   adding 'htmd/kinetics.py'
2026-04-22T12:11:15,969   adding 'htmd/latest.py'
2026-04-22T12:11:15,970   adding 'htmd/license.py'
2026-04-22T12:11:15,977   adding 'htmd/metricdata.py'
2026-04-22T12:11:15,979   adding 'htmd/metricdatagenerator.py'
2026-04-22T12:11:15,988   adding 'htmd/model.py'
2026-04-22T12:11:15,991   adding 'htmd/mutualinformation.py'
2026-04-22T12:11:15,992   adding 'htmd/parallelprogress.py'
2026-04-22T12:11:15,994   adding 'htmd/pathplanning.py'
2026-04-22T12:11:15,996   adding 'htmd/session.py'
2026-04-22T12:11:15,998   adding 'htmd/simlist.py'
2026-04-22T12:11:16,000   adding 'htmd/ui.py'
2026-04-22T12:11:16,001   adding 'htmd/units.py'
2026-04-22T12:11:16,003   adding 'htmd/util.py'
2026-04-22T12:11:16,004   adding 'htmd/versionwarnings.py'
2026-04-22T12:11:16,006   adding 'htmd/adaptive/__init__.py'
2026-04-22T12:11:16,009   adding 'htmd/adaptive/adaptive.py'
2026-04-22T12:11:16,012   adding 'htmd/adaptive/adaptivebandit.py'
2026-04-22T12:11:16,016   adding 'htmd/adaptive/adaptivegoal.py'
2026-04-22T12:11:16,019   adding 'htmd/adaptive/adaptivegoaleg.py'
2026-04-22T12:11:16,023   adding 'htmd/adaptive/adaptiverun.py'
2026-04-22T12:11:16,024   adding 'htmd/adaptive/util.py'
2026-04-22T12:11:16,027   adding 'htmd/builder/__init__.py'
2026-04-22T12:11:16,038   adding 'htmd/builder/amber.py'
2026-04-22T12:11:16,042   adding 'htmd/builder/builder.py'
2026-04-22T12:11:16,049   adding 'htmd/builder/charmm.py'
2026-04-22T12:11:16,052   adding 'htmd/builder/ionize.py'
2026-04-22T12:11:16,054   adding 'htmd/builder/loopmodeler.py'
2026-04-22T12:11:16,058   adding 'htmd/builder/noncanonical.py'
2026-04-22T12:11:16,061   adding 'htmd/builder/solvate.py'
2026-04-22T12:11:16,063   adding 'htmd/clustering/__init__.py'
2026-04-22T12:11:16,065   adding 'htmd/clustering/kcenters.py'
2026-04-22T12:11:16,068   adding 'htmd/clustering/regular.py'
2026-04-22T12:11:16,070   adding 'htmd/membranebuilder/__init__.py'
2026-04-22T12:11:16,073   adding 'htmd/membranebuilder/build_membrane.py'
2026-04-22T12:11:16,075   adding 'htmd/membranebuilder/globalminimization.py'
2026-04-22T12:11:16,077   adding 'htmd/membranebuilder/ljfluid.py'
2026-04-22T12:11:16,079   adding 'htmd/membranebuilder/ringpenetration.py'
2026-04-22T12:11:16,081   adding 'htmd/projections/__init__.py'
2026-04-22T12:11:16,083   adding 'htmd/projections/gwpca.py'
2026-04-22T12:11:16,085   adding 'htmd/projections/kmeanstri.py'
2026-04-22T12:11:16,088   adding 'htmd/projections/metric.py'
2026-04-22T12:11:16,091   adding 'htmd/projections/tica.py'
2026-04-22T12:11:16,157   adding 'htmd/share/license-checker'
2026-04-22T12:11:16,189   adding 'htmd/share/builder/charmmlipid2amber.csv'
2026-04-22T12:11:16,192   adding 'htmd/share/builder/triala_capped.cif'
2026-04-22T12:11:16,193   adding 'htmd/share/builder/triala_capped.mmtf'
2026-04-22T12:11:16,196   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2026-04-22T12:11:16,198   adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi'
2026-04-22T12:11:16,199   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2026-04-22T12:11:16,201   adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi'
2026-04-22T12:11:16,202   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2026-04-22T12:11:16,204   adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi'
2026-04-22T12:11:16,205   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2026-04-22T12:11:16,207   adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi'
2026-04-22T12:11:16,209   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2026-04-22T12:11:16,210   adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi'
2026-04-22T12:11:16,212   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2026-04-22T12:11:16,214   adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi'
2026-04-22T12:11:16,216   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2026-04-22T12:11:16,217   adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi'
2026-04-22T12:11:16,219   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2026-04-22T12:11:16,221   adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi'
2026-04-22T12:11:16,222   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2026-04-22T12:11:16,224   adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi'
2026-04-22T12:11:16,225   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2026-04-22T12:11:16,227   adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi'
2026-04-22T12:11:16,228   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2026-04-22T12:11:16,236   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2026-04-22T12:11:16,240   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2026-04-22T12:11:16,242   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi'
2026-04-22T12:11:16,243   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2026-04-22T12:11:16,244   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi'
2026-04-22T12:11:16,245   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2026-04-22T12:11:16,247   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi'
2026-04-22T12:11:16,248   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2026-04-22T12:11:16,249   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi'
2026-04-22T12:11:16,250   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2026-04-22T12:11:16,252   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi'
2026-04-22T12:11:16,253   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2026-04-22T12:11:16,254   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi'
2026-04-22T12:11:16,255   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2026-04-22T12:11:16,257   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi'
2026-04-22T12:11:16,258   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2026-04-22T12:11:16,260   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi'
2026-04-22T12:11:16,261   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2026-04-22T12:11:16,262   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi'
2026-04-22T12:11:16,263   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2026-04-22T12:11:16,265   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi'
2026-04-22T12:11:16,266   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2026-04-22T12:11:16,267   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi'
2026-04-22T12:11:16,268   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2026-04-22T12:11:16,270   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi'
2026-04-22T12:11:16,271   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2026-04-22T12:11:16,272   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi'
2026-04-22T12:11:16,273   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2026-04-22T12:11:16,275   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi'
2026-04-22T12:11:16,276   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2026-04-22T12:11:16,277   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi'
2026-04-22T12:11:16,279   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2026-04-22T12:11:16,280   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi'
2026-04-22T12:11:16,281   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2026-04-22T12:11:16,283   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi'
2026-04-22T12:11:16,284   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2026-04-22T12:11:16,285   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi'
2026-04-22T12:11:16,286   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2026-04-22T12:11:16,288   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi'
2026-04-22T12:11:16,289   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2026-04-22T12:11:16,291   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi'
2026-04-22T12:11:16,292   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2026-04-22T12:11:16,293   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi'
2026-04-22T12:11:16,294   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2026-04-22T12:11:16,296   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi'
2026-04-22T12:11:16,297   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2026-04-22T12:11:16,298   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi'
2026-04-22T12:11:16,300   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2026-04-22T12:11:16,301   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi'
2026-04-22T12:11:16,302   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2026-04-22T12:11:16,303   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi'
2026-04-22T12:11:16,305   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2026-04-22T12:11:16,306   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi'
2026-04-22T12:11:16,307   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2026-04-22T12:11:16,309   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi'
2026-04-22T12:11:16,310   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2026-04-22T12:11:16,312   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi'
2026-04-22T12:11:16,313   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2026-04-22T12:11:16,314   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi'
2026-04-22T12:11:16,315   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2026-04-22T12:11:16,317   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi'
2026-04-22T12:11:16,318   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2026-04-22T12:11:16,320   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi'
2026-04-22T12:11:16,321   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2026-04-22T12:11:16,323   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi'
2026-04-22T12:11:16,324   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2026-04-22T12:11:16,325   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi'
2026-04-22T12:11:16,327   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2026-04-22T12:11:16,328   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi'
2026-04-22T12:11:16,330   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2026-04-22T12:11:16,331   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi'
2026-04-22T12:11:16,332   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2026-04-22T12:11:16,334   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi'
2026-04-22T12:11:16,335   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2026-04-22T12:11:16,337   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi'
2026-04-22T12:11:16,338   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2026-04-22T12:11:16,340   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi'
2026-04-22T12:11:16,341   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2026-04-22T12:11:16,342   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi'
2026-04-22T12:11:16,344   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2026-04-22T12:11:16,345   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi'
2026-04-22T12:11:16,347   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2026-04-22T12:11:16,348   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi'
2026-04-22T12:11:16,349   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2026-04-22T12:11:16,351   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi'
2026-04-22T12:11:16,352   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2026-04-22T12:11:16,354   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi'
2026-04-22T12:11:16,355   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2026-04-22T12:11:16,357   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi'
2026-04-22T12:11:16,358   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2026-04-22T12:11:16,360   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi'
2026-04-22T12:11:16,361   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2026-04-22T12:11:16,362   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi'
2026-04-22T12:11:16,363   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2026-04-22T12:11:16,365   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi'
2026-04-22T12:11:16,366   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2026-04-22T12:11:16,367   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi'
2026-04-22T12:11:16,368   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2026-04-22T12:11:16,370   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi'
2026-04-22T12:11:16,371   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2026-04-22T12:11:16,373   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi'
2026-04-22T12:11:16,374   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2026-04-22T12:11:16,375   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi'
2026-04-22T12:11:16,377   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2026-04-22T12:11:16,378   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi'
2026-04-22T12:11:16,379   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2026-04-22T12:11:16,381   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi'
2026-04-22T12:11:16,382   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2026-04-22T12:11:16,383   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi'
2026-04-22T12:11:16,385   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2026-04-22T12:11:16,386   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi'
2026-04-22T12:11:16,388   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2026-04-22T12:11:16,389   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi'
2026-04-22T12:11:16,390   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2026-04-22T12:11:16,392   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi'
2026-04-22T12:11:16,393   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2026-04-22T12:11:16,394   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi'
2026-04-22T12:11:16,396   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2026-04-22T12:11:16,397   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi'
2026-04-22T12:11:16,399   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2026-04-22T12:11:16,400   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi'
2026-04-22T12:11:16,402   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2026-04-22T12:11:16,403   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2026-04-22T12:11:16,405   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi'
2026-04-22T12:11:16,406   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2026-04-22T12:11:16,408   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi'
2026-04-22T12:11:16,409   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2026-04-22T12:11:16,411   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi'
2026-04-22T12:11:16,412   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2026-04-22T12:11:16,414   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi'
2026-04-22T12:11:16,415   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2026-04-22T12:11:16,417   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi'
2026-04-22T12:11:16,438   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2026-04-22T12:11:16,441   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2026-04-22T12:11:16,443   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2026-04-22T12:11:16,448   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2026-04-22T12:11:16,449   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2026-04-22T12:11:16,451   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2026-04-22T12:11:16,455   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2026-04-22T12:11:16,457   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2026-04-22T12:11:16,459   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi'
2026-04-22T12:11:16,460   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2026-04-22T12:11:16,462   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi'
2026-04-22T12:11:16,464   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2026-04-22T12:11:16,466   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi'
2026-04-22T12:11:16,467   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2026-04-22T12:11:16,469   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi'
2026-04-22T12:11:16,470   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2026-04-22T12:11:16,472   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi'
2026-04-22T12:11:16,473   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2026-04-22T12:11:16,474   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi'
2026-04-22T12:11:16,476   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2026-04-22T12:11:16,477   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi'
2026-04-22T12:11:16,478   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2026-04-22T12:11:16,480   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi'
2026-04-22T12:11:16,481   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2026-04-22T12:11:16,483   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi'
2026-04-22T12:11:16,484   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2026-04-22T12:11:16,486   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi'
2026-04-22T12:11:16,487   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2026-04-22T12:11:16,489   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi'
2026-04-22T12:11:16,490   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2026-04-22T12:11:16,491   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi'
2026-04-22T12:11:16,493   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2026-04-22T12:11:16,494   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi'
2026-04-22T12:11:16,495   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2026-04-22T12:11:16,497   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi'
2026-04-22T12:11:16,498   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2026-04-22T12:11:16,500   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi'
2026-04-22T12:11:16,502   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2026-04-22T12:11:16,503   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi'
2026-04-22T12:11:16,505   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2026-04-22T12:11:16,506   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi'
2026-04-22T12:11:16,508   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2026-04-22T12:11:16,510   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi'
2026-04-22T12:11:16,512   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2026-04-22T12:11:16,513   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi'
2026-04-22T12:11:16,514   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2026-04-22T12:11:16,516   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi'
2026-04-22T12:11:16,517   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2026-04-22T12:11:16,518   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi'
2026-04-22T12:11:16,520   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2026-04-22T12:11:16,521   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2026-04-22T12:11:16,522   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi'
2026-04-22T12:11:16,523   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2026-04-22T12:11:16,525   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi'
2026-04-22T12:11:16,533   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2026-04-22T12:11:16,535   adding 'htmd/share/builder/caps/ACE.cif'
2026-04-22T12:11:16,537   adding 'htmd/share/builder/caps/ACE.pdb'
2026-04-22T12:11:16,538   adding 'htmd/share/builder/caps/NHE.pdb'
2026-04-22T12:11:16,539   adding 'htmd/share/builder/caps/NME.cif'
2026-04-22T12:11:16,541   adding 'htmd/share/builder/caps/NME.pdb'
2026-04-22T12:11:16,543   adding 'htmd/share/builder/charmmfiles/Makefile'
2026-04-22T12:11:16,544   adding 'htmd/share/builder/charmmfiles/README.md'
2026-04-22T12:11:16,560   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2026-04-22T12:11:16,574   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2026-04-22T12:11:16,578   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2026-04-22T12:11:16,593   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2026-04-22T12:11:16,679   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2026-04-22T12:11:16,689   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2026-04-22T12:11:16,692   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm'
2026-04-22T12:11:16,700   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2026-04-22T12:11:16,715   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2026-04-22T12:11:16,718   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2026-04-22T12:11:16,720   adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str'
2026-04-22T12:11:16,797   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str'
2026-04-22T12:11:16,806   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str'
2026-04-22T12:11:16,936   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str'
2026-04-22T12:11:16,963   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str'
2026-04-22T12:11:16,975   adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str'
2026-04-22T12:11:16,978   adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str'
2026-04-22T12:11:17,017   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str'
2026-04-22T12:11:17,050   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str'
2026-04-22T12:11:17,157   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str'
2026-04-22T12:11:17,163   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str'
2026-04-22T12:11:17,176   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str'
2026-04-22T12:11:17,183   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str'
2026-04-22T12:11:17,275   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str'
2026-04-22T12:11:17,300   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str'
2026-04-22T12:11:17,320   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str'
2026-04-22T12:11:17,412   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str'
2026-04-22T12:11:17,423   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str'
2026-04-22T12:11:17,686   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str'
2026-04-22T12:11:17,808   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str'
2026-04-22T12:11:17,871   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str'
2026-04-22T12:11:17,887   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str'
2026-04-22T12:11:17,895   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str'
2026-04-22T12:11:17,911   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str'
2026-04-22T12:11:17,922   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str'
2026-04-22T12:11:17,930   adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str'
2026-04-22T12:11:17,933   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str'
2026-04-22T12:11:17,934   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str'
2026-04-22T12:11:17,936   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str'
2026-04-22T12:11:17,937   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str'
2026-04-22T12:11:17,939   adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str'
2026-04-22T12:11:17,952   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str'
2026-04-22T12:11:17,978   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str'
2026-04-22T12:11:17,998   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str'
2026-04-22T12:11:18,004   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str'
2026-04-22T12:11:18,133   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str'
2026-04-22T12:11:18,269   adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str'
2026-04-22T12:11:18,279   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str'
2026-04-22T12:11:18,282   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str'
2026-04-22T12:11:18,294   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str'
2026-04-22T12:11:18,319   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str'
2026-04-22T12:11:18,322   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str'
2026-04-22T12:11:18,325   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str'
2026-04-22T12:11:18,328   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str'
2026-04-22T12:11:18,338   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str'
2026-04-22T12:11:18,537   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str'
2026-04-22T12:11:18,558   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str'
2026-04-22T12:11:18,563   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str'
2026-04-22T12:11:18,571   adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str'
2026-04-22T12:11:18,581   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2026-04-22T12:11:18,591   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2026-04-22T12:11:18,597   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2026-04-22T12:11:18,623   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2026-04-22T12:11:18,930   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2026-04-22T12:11:19,011   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2026-04-22T12:11:19,062   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf'
2026-04-22T12:11:19,069   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2026-04-22T12:11:19,079   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2026-04-22T12:11:19,081   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2026-04-22T12:11:19,083   adding 'htmd/share/membranebuilder/lipids/lipiddb.csv'
2026-04-22T12:11:19,085   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb'
2026-04-22T12:11:19,087   adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb'
2026-04-22T12:11:19,090   adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb'
2026-04-22T12:11:19,380   adding 'htmd/share/solvate/wat.pdb'
2026-04-22T12:11:19,394   adding 'acellera_htmd-2.6.3.dist-info/METADATA'
2026-04-22T12:11:19,395   adding 'acellera_htmd-2.6.3.dist-info/WHEEL'
2026-04-22T12:11:19,396   adding 'acellera_htmd-2.6.3.dist-info/entry_points.txt'
2026-04-22T12:11:19,397   adding 'acellera_htmd-2.6.3.dist-info/top_level.txt'
2026-04-22T12:11:19,403   adding 'acellera_htmd-2.6.3.dist-info/RECORD'
2026-04-22T12:11:19,454   removing build/bdist.linux-armv7l/wheel
2026-04-22T12:11:19,643   Building wheel for acellera-htmd (pyproject.toml): finished with status 'done'
2026-04-22T12:11:19,741   Created wheel for acellera-htmd: filename=acellera_htmd-2.6.3-py3-none-any.whl size=4269289 sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b
2026-04-22T12:11:19,742   Stored in directory: /tmp/pip-ephem-wheel-cache-l4p040zm/wheels/c9/75/37/3dc8b0e42d4ed022e079775c6c568c489967e19767d5aa0c56
2026-04-22T12:11:19,765 Successfully built acellera-htmd
2026-04-22T12:11:19,876 Removed build tracker: '/tmp/pip-build-tracker-5cidvu7k'