2026-04-22T12:35:53,925 Created temporary directory: /tmp/pip-ephem-wheel-cache-mi0ez7xn 2026-04-22T12:35:53,927 Created temporary directory: /tmp/pip-build-tracker-tb06vtmz 2026-04-22T12:35:53,928 Initialized build tracking at /tmp/pip-build-tracker-tb06vtmz 2026-04-22T12:35:53,928 Created build tracker: /tmp/pip-build-tracker-tb06vtmz 2026-04-22T12:35:53,929 Entered build tracker: /tmp/pip-build-tracker-tb06vtmz 2026-04-22T12:35:53,929 Created temporary directory: /tmp/pip-wheel-d7xxqzso 2026-04-22T12:35:53,933 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-22T12:35:53,935 Created temporary directory: /tmp/pip-ephem-wheel-cache-imtodb9f 2026-04-22T12:35:53,956 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-22T12:35:53,960 2 location(s) to search for versions of acellera-htmd: 2026-04-22T12:35:53,960 * https://pypi.org/simple/acellera-htmd/ 2026-04-22T12:35:53,960 * https://www.piwheels.org/simple/acellera-htmd/ 2026-04-22T12:35:53,961 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-04-22T12:35:53,961 Getting page https://pypi.org/simple/acellera-htmd/ 2026-04-22T12:35:53,963 Found index url https://pypi.org/simple 2026-04-22T12:35:54,110 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-04-22T12:35:54,113 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-04-22T12:35:54,114 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-04-22T12:35:54,115 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-04-22T12:35:54,115 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-04-22T12:35:54,116 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-04-22T12:35:54,117 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-04-22T12:35:54,118 Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0 2026-04-22T12:35:54,119 Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1 2026-04-22T12:35:54,120 Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2 2026-04-22T12:35:54,121 Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3 2026-04-22T12:35:54,122 Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4 2026-04-22T12:35:54,123 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-22T12:35:54,124 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-04-22T12:35:54,125 Found index url https://www.piwheels.org/simple 2026-04-22T12:35:54,297 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-04-22T12:35:54,300 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,301 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,301 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,302 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,302 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,303 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-22T12:35:54,303 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-04-22T12:35:54,303 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-22T12:35:54,304 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-04-22T12:35:54,326 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-04-22T12:35:54,345 Collecting acellera-htmd==2.6.4 2026-04-22T12:35:54,347 Created temporary directory: /tmp/pip-unpack-4qux02b6 2026-04-22T12:35:54,494 Downloading acellera_htmd-2.6.4.tar.gz (4.0 MB) 2026-04-22T12:35:56,361 Added acellera-htmd==2.6.4 from https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-tb06vtmz' 2026-04-22T12:35:56,367 Created temporary directory: /tmp/pip-build-env-rg5zt4cf 2026-04-22T12:35:56,371 Installing build dependencies: started 2026-04-22T12:35:56,372 Running command pip subprocess to install build dependencies 2026-04-22T12:35:57,533 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-22T12:35:58,022 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-22T12:35:58,045 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-22T12:35:59,797 Collecting setuptools 2026-04-22T12:35:59,874 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-22T12:36:00,252 Collecting setuptools-scm>=8 2026-04-22T12:36:00,268 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-22T12:36:00,353 Collecting vcs-versioning>=1.0.0.dev0 2026-04-22T12:36:00,371 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-22T12:36:00,551 Collecting packaging>=20 2026-04-22T12:36:00,567 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-22T12:36:03,554 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-22T12:36:07,116 Creating /tmp/pip-build-env-rg5zt4cf/overlay/local/bin 2026-04-22T12:36:07,118 changing mode of /tmp/pip-build-env-rg5zt4cf/overlay/local/bin/vcs-versioning to 755 2026-04-22T12:36:07,227 changing mode of /tmp/pip-build-env-rg5zt4cf/overlay/local/bin/setuptools-scm to 755 2026-04-22T12:36:07,254 Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-22T12:36:07,541 Installing build dependencies: finished with status 'done' 2026-04-22T12:36:07,547 Getting requirements to build wheel: started 2026-04-22T12:36:07,548 Running command Getting requirements to build wheel 2026-04-22T12:36:08,393 running egg_info 2026-04-22T12:36:08,401 writing acellera_htmd.egg-info/PKG-INFO 2026-04-22T12:36:08,406 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-22T12:36:08,408 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-22T12:36:08,412 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-22T12:36:08,413 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-22T12:36:08,498 /tmp/pip-build-env-rg5zt4cf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-22T12:36:08,498 return get_active_overrides().subprocess_timeout 2026-04-22T12:36:08,506 listing git files failed - pretending there aren't any 2026-04-22T12:36:08,512 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:08,532 reading manifest template 'MANIFEST.in' 2026-04-22T12:36:08,550 no previously-included directories found matching 'htmd/data' 2026-04-22T12:36:08,551 no previously-included directories found matching '.github' 2026-04-22T12:36:08,552 no previously-included directories found matching 'doc' 2026-04-22T12:36:08,553 no previously-included directories found matching 'package' 2026-04-22T12:36:08,554 no previously-included directories found matching 'tests' 2026-04-22T12:36:08,556 no previously-included directories found matching 'tutorials' 2026-04-22T12:36:08,557 warning: no previously-included files found matching 'Makefile' 2026-04-22T12:36:08,558 adding license file 'LICENSE' 2026-04-22T12:36:08,579 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:08,686 Getting requirements to build wheel: finished with status 'done' 2026-04-22T12:36:08,689 Created temporary directory: /tmp/pip-modern-metadata-wvyo82bl 2026-04-22T12:36:08,692 Preparing metadata (pyproject.toml): started 2026-04-22T12:36:08,693 Running command Preparing metadata (pyproject.toml) 2026-04-22T12:36:09,463 running dist_info 2026-04-22T12:36:09,477 creating /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info 2026-04-22T12:36:09,478 writing /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/PKG-INFO 2026-04-22T12:36:09,483 writing dependency_links to /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/dependency_links.txt 2026-04-22T12:36:09,484 writing entry points to /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/entry_points.txt 2026-04-22T12:36:09,488 writing requirements to /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/requires.txt 2026-04-22T12:36:09,489 writing top-level names to /tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/top_level.txt 2026-04-22T12:36:09,490 writing manifest file '/tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:09,563 /tmp/pip-build-env-rg5zt4cf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-22T12:36:09,563 return get_active_overrides().subprocess_timeout 2026-04-22T12:36:09,570 listing git files failed - pretending there aren't any 2026-04-22T12:36:09,574 reading manifest file '/tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:09,576 reading manifest template 'MANIFEST.in' 2026-04-22T12:36:09,594 no previously-included directories found matching 'htmd/data' 2026-04-22T12:36:09,595 no previously-included directories found matching '.github' 2026-04-22T12:36:09,596 no previously-included directories found matching 'doc' 2026-04-22T12:36:09,597 no previously-included directories found matching 'package' 2026-04-22T12:36:09,598 no previously-included directories found matching 'tests' 2026-04-22T12:36:09,599 no previously-included directories found matching 'tutorials' 2026-04-22T12:36:09,600 warning: no previously-included files found matching 'Makefile' 2026-04-22T12:36:09,600 adding license file 'LICENSE' 2026-04-22T12:36:09,617 writing manifest file '/tmp/pip-modern-metadata-wvyo82bl/acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:09,619 creating '/tmp/pip-modern-metadata-wvyo82bl/acellera_htmd-2.6.4.dist-info' 2026-04-22T12:36:09,751 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-22T12:36:09,756 Source in /tmp/pip-wheel-d7xxqzso/acellera-htmd_127556f81417453cbcc94c4e9c954ebc has version 2.6.4, which satisfies requirement acellera-htmd==2.6.4 from https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz 2026-04-22T12:36:09,757 Removed acellera-htmd==2.6.4 from https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-tb06vtmz' 2026-04-22T12:36:09,763 Created temporary directory: /tmp/pip-unpack-tq8z5bke 2026-04-22T12:36:09,763 Building wheels for collected packages: acellera-htmd 2026-04-22T12:36:09,768 Created temporary directory: /tmp/pip-wheel-2rfu597h 2026-04-22T12:36:09,768 Destination directory: /tmp/pip-wheel-2rfu597h 2026-04-22T12:36:09,770 Building wheel for acellera-htmd (pyproject.toml): started 2026-04-22T12:36:09,772 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-04-22T12:36:10,507 running bdist_wheel 2026-04-22T12:36:10,532 running build 2026-04-22T12:36:10,532 running build_py 2026-04-22T12:36:10,534 creating build/lib/htmd 2026-04-22T12:36:10,536 copying htmd/session.py -> build/lib/htmd 2026-04-22T12:36:10,538 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-04-22T12:36:10,541 copying htmd/pathplanning.py -> build/lib/htmd 2026-04-22T12:36:10,543 copying htmd/license.py -> build/lib/htmd 2026-04-22T12:36:10,546 copying htmd/util.py -> build/lib/htmd 2026-04-22T12:36:10,548 copying htmd/simlist.py -> build/lib/htmd 2026-04-22T12:36:10,551 copying htmd/model.py -> build/lib/htmd 2026-04-22T12:36:10,554 copying htmd/units.py -> build/lib/htmd 2026-04-22T12:36:10,556 copying htmd/ui.py -> build/lib/htmd 2026-04-22T12:36:10,558 copying htmd/latest.py -> build/lib/htmd 2026-04-22T12:36:10,560 copying htmd/versionwarnings.py -> build/lib/htmd 2026-04-22T12:36:10,561 copying htmd/home.py -> build/lib/htmd 2026-04-22T12:36:10,563 copying htmd/decorators.py -> build/lib/htmd 2026-04-22T12:36:10,565 copying htmd/config.py -> build/lib/htmd 2026-04-22T12:36:10,566 copying htmd/parallelprogress.py -> build/lib/htmd 2026-04-22T12:36:10,568 copying htmd/dock.py -> build/lib/htmd 2026-04-22T12:36:10,570 copying htmd/metricdata.py -> build/lib/htmd 2026-04-22T12:36:10,573 copying htmd/__init__.py -> build/lib/htmd 2026-04-22T12:36:10,575 copying htmd/kinetics.py -> build/lib/htmd 2026-04-22T12:36:10,577 copying htmd/mutualinformation.py -> build/lib/htmd 2026-04-22T12:36:10,580 creating build/lib/htmd/builder 2026-04-22T12:36:10,581 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-04-22T12:36:10,583 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-04-22T12:36:10,586 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-04-22T12:36:10,588 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-04-22T12:36:10,591 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-04-22T12:36:10,594 copying htmd/builder/noncanonical.py -> build/lib/htmd/builder 2026-04-22T12:36:10,597 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-04-22T12:36:10,599 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-04-22T12:36:10,601 creating build/lib/htmd/membranebuilder 2026-04-22T12:36:10,602 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-04-22T12:36:10,605 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-04-22T12:36:10,607 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-04-22T12:36:10,609 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-04-22T12:36:10,611 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-04-22T12:36:10,614 creating build/lib/htmd/projections 2026-04-22T12:36:10,615 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-04-22T12:36:10,617 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-04-22T12:36:10,619 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-04-22T12:36:10,621 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-04-22T12:36:10,623 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-04-22T12:36:10,626 creating build/lib/htmd/clustering 2026-04-22T12:36:10,627 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-04-22T12:36:10,629 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-04-22T12:36:10,631 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-04-22T12:36:10,633 creating build/lib/htmd/adaptive 2026-04-22T12:36:10,634 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,636 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,639 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,641 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,644 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,647 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,650 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-04-22T12:36:10,683 creating build/lib/htmd/share 2026-04-22T12:36:10,684 copying htmd/share/license-checker -> build/lib/htmd/share 2026-04-22T12:36:10,692 creating build/lib/htmd/share/builder 2026-04-22T12:36:10,693 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-04-22T12:36:10,695 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-04-22T12:36:10,698 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-04-22T12:36:10,703 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,705 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,707 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,709 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,711 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,713 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,716 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,718 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,720 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,723 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,725 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,727 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,729 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,731 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,734 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,736 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,738 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,740 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,743 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,745 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,747 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,749 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,752 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,754 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,756 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,758 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,761 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,763 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,765 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,768 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,770 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,772 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,774 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,777 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,779 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,781 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,783 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,786 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,788 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,790 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,793 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,795 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,797 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,799 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,801 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,803 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,805 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,808 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,810 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,812 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,814 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,819 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,821 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,823 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,825 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,828 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,830 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,832 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,834 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,837 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,839 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,841 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,843 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,845 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,847 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,849 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,852 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,854 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,856 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,858 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,860 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,862 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,864 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,867 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,869 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,871 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,873 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,876 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,878 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,880 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,882 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,884 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,887 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,889 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,891 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,894 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,896 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,898 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,900 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,902 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,905 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,907 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,909 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,911 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,913 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,916 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,918 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,920 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,922 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,925 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,927 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,929 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,931 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,933 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,935 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,937 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,940 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,942 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,944 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,946 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,948 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,951 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,953 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,955 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,957 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,960 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,962 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,964 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,967 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,969 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,971 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,973 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,975 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,977 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,979 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,981 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,983 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,985 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,987 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,989 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,991 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,993 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,995 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:10,997 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:10,998 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,000 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,002 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,005 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,008 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,010 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,013 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,015 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,018 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,020 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,023 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,025 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,028 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,031 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,033 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,036 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,038 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,041 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,043 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,045 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,048 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,050 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:11,052 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,053 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,056 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,058 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,060 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,063 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,065 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,068 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,070 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,072 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,075 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,077 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,079 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,082 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,084 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,086 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,088 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,091 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,093 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,095 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,097 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,100 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,103 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,106 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,108 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,110 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,113 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,115 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,118 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,120 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,123 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,125 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,128 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,131 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,134 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,136 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,139 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,141 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,144 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,147 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,149 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,152 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,155 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,157 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,160 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,163 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,166 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,168 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,171 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:11,173 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,175 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,178 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,181 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,184 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,187 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,191 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:11,193 creating build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,195 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,197 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,200 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,203 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,206 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-04-22T12:36:11,209 creating build/lib/htmd/share/builder/charmmfiles 2026-04-22T12:36:11,210 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-04-22T12:36:11,213 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-04-22T12:36:11,215 creating build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,217 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,222 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,225 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,229 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,234 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,254 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,257 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,262 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,265 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,268 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:11,274 creating build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,275 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,284 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,359 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,372 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,375 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,380 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,382 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,386 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,389 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,393 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:11,400 creating build/lib/htmd/share/builder/charmmfiles/str 2026-04-22T12:36:11,401 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-04-22T12:36:11,404 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,406 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,441 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,445 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,447 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,450 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,455 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,458 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,462 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,465 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,468 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,470 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,473 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:11,479 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,480 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,501 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,506 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,513 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,516 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,536 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:11,542 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,543 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,547 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,581 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,587 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,600 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,626 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,654 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,664 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,688 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,700 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,704 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,707 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,710 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,732 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,737 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,743 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,747 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,755 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,760 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:11,765 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-22T12:36:11,766 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-22T12:36:11,769 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,770 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,773 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,775 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,778 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,780 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:11,783 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,784 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,802 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,807 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,840 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,843 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:11,848 creating build/lib/htmd/share/membranebuilder/lipids 2026-04-22T12:36:11,850 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-04-22T12:36:11,853 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-22T12:36:11,854 copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-22T12:36:11,857 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-22T12:36:11,858 copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-22T12:36:11,861 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-22T12:36:11,862 copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-22T12:36:11,865 creating build/lib/htmd/share/solvate 2026-04-22T12:36:11,866 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-04-22T12:36:11,921 installing to build/bdist.linux-armv7l/wheel 2026-04-22T12:36:11,922 running install 2026-04-22T12:36:11,944 running install_lib 2026-04-22T12:36:11,952 creating build/bdist.linux-armv7l/wheel 2026-04-22T12:36:11,954 creating build/bdist.linux-armv7l/wheel/htmd 2026-04-22T12:36:11,955 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:11,957 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:11,960 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:11,962 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:11,965 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:11,968 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-04-22T12:36:11,969 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,971 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,973 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,976 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,978 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,982 copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,984 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,987 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-22T12:36:11,989 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-04-22T12:36:11,990 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-22T12:36:11,993 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-22T12:36:11,995 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-22T12:36:11,997 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-22T12:36:11,998 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-22T12:36:12,001 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:12,003 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:12,007 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:12,009 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-04-22T12:36:12,010 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-22T12:36:12,013 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-22T12:36:12,015 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-22T12:36:12,017 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-22T12:36:12,019 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-22T12:36:12,021 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:12,023 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-04-22T12:36:12,025 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-04-22T12:36:12,026 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-04-22T12:36:12,030 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,031 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,033 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,035 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,037 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,040 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,042 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,044 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,047 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,049 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,052 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,054 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,056 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,058 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,060 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,062 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,064 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,066 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,068 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,069 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,071 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,073 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,075 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,077 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,079 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,081 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,082 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,084 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,086 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,088 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,090 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,092 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,093 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,095 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,097 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,099 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,101 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,103 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,104 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,106 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,108 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,110 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,112 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,114 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,116 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,118 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,120 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,122 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,124 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,125 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,127 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,131 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,133 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,135 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,136 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,138 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,140 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,142 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,144 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,146 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,147 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,149 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,151 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,153 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,155 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,156 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,158 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,160 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,162 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,164 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,166 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,168 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,170 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,171 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,173 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,175 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,177 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,178 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,180 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,182 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,184 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,186 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,187 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,190 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,191 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,193 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,195 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,197 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,199 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,201 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,203 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,204 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,206 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,208 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,210 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,212 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,214 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,216 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,217 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,219 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,221 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,222 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,224 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,226 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,227 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,229 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,231 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,233 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,234 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,236 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,238 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,240 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,242 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,243 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,245 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,247 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,249 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,251 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,253 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,255 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,256 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,258 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,260 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,262 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,263 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,265 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,266 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,268 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,270 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,272 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,273 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,275 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,277 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-22T12:36:12,279 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,280 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,282 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,284 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,287 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,289 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,291 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,293 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,295 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,297 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,299 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,301 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,303 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,305 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,307 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,309 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,311 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,313 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,315 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,317 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,318 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,320 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,322 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-22T12:36:12,325 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,326 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,328 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,331 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,333 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,334 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,336 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,338 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,340 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,342 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,344 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,346 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,348 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,350 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,352 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,354 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,355 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,357 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,359 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,361 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,362 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,364 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,367 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,369 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,371 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,372 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,374 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,376 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,378 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,380 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,382 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,384 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,385 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,387 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,389 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,391 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,393 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,394 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,396 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,398 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,400 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,402 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,404 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,405 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,407 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,409 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,410 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,412 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,413 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-22T12:36:12,416 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,417 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,419 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,421 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,424 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,427 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,429 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-22T12:36:12,431 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-04-22T12:36:12,432 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-22T12:36:12,434 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-22T12:36:12,436 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-22T12:36:12,437 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-22T12:36:12,439 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-22T12:36:12,441 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-22T12:36:12,443 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-22T12:36:12,446 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-04-22T12:36:12,447 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-22T12:36:12,448 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-22T12:36:12,451 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,452 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,457 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,460 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,464 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,471 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,493 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,497 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,503 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,506 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,510 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-22T12:36:12,517 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,518 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,534 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,597 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,616 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,620 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,625 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,627 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,631 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,635 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,639 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-22T12:36:12,649 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-04-22T12:36:12,651 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,652 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,683 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,687 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,690 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,693 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,698 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,701 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,705 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,708 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,711 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,713 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,716 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-22T12:36:12,722 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,723 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,743 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,748 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,754 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,757 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,778 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-22T12:36:12,784 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-04-22T12:36:12,787 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,788 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,792 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,835 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,840 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,855 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,882 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,909 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,917 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,932 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,940 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,943 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,946 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,948 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,966 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,970 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,974 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,977 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,986 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,990 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-22T12:36:12,996 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-04-22T12:36:12,997 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-04-22T12:36:13,000 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,001 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,004 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,007 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,009 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,011 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-22T12:36:13,014 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,015 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,034 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,038 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,068 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,071 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-22T12:36:13,076 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-22T12:36:13,082 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-04-22T12:36:13,085 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-04-22T12:36:13,087 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-04-22T12:36:13,088 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-04-22T12:36:13,092 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-04-22T12:36:13,093 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-04-22T12:36:13,097 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-04-22T12:36:13,098 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-04-22T12:36:13,101 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-04-22T12:36:13,104 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-04-22T12:36:13,105 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-04-22T12:36:13,139 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-04-22T12:36:13,147 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-04-22T12:36:13,148 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-22T12:36:13,151 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-22T12:36:13,153 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-22T12:36:13,156 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,158 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,160 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,163 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,165 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,167 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,169 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,172 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,176 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,178 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,181 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-04-22T12:36:13,182 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,185 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,187 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,190 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,193 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,196 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,199 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-22T12:36:13,201 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-22T12:36:13,204 running install_egg_info 2026-04-22T12:36:13,217 running egg_info 2026-04-22T12:36:13,224 writing acellera_htmd.egg-info/PKG-INFO 2026-04-22T12:36:13,229 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-22T12:36:13,231 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-22T12:36:13,234 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-22T12:36:13,236 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-22T12:36:13,303 /tmp/pip-build-env-rg5zt4cf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-22T12:36:13,304 return get_active_overrides().subprocess_timeout 2026-04-22T12:36:13,312 listing git files failed - pretending there aren't any 2026-04-22T12:36:13,317 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:13,337 reading manifest template 'MANIFEST.in' 2026-04-22T12:36:13,355 no previously-included directories found matching 'htmd/data' 2026-04-22T12:36:13,357 no previously-included directories found matching '.github' 2026-04-22T12:36:13,359 no previously-included directories found matching 'doc' 2026-04-22T12:36:13,361 no previously-included directories found matching 'package' 2026-04-22T12:36:13,364 no previously-included directories found matching 'tests' 2026-04-22T12:36:13,366 no previously-included directories found matching 'tutorials' 2026-04-22T12:36:13,369 warning: no previously-included files found matching 'Makefile' 2026-04-22T12:36:13,369 adding license file 'LICENSE' 2026-04-22T12:36:13,403 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-22T12:36:13,406 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.4-py3.11.egg-info 2026-04-22T12:36:13,421 running install_scripts 2026-04-22T12:36:13,435 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.4.dist-info/WHEEL 2026-04-22T12:36:13,439 creating '/tmp/pip-wheel-2rfu597h/.tmp-c2qaeunz/acellera_htmd-2.6.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-22T12:36:13,443 adding 'acellera_htmd-2.6.4.dist-info/licenses/LICENSE' 2026-04-22T12:36:13,447 adding 'htmd/__init__.py' 2026-04-22T12:36:13,449 adding 'htmd/config.py' 2026-04-22T12:36:13,452 adding 'htmd/decorators.py' 2026-04-22T12:36:13,454 adding 'htmd/dock.py' 2026-04-22T12:36:13,457 adding 'htmd/home.py' 2026-04-22T12:36:13,461 adding 'htmd/kinetics.py' 2026-04-22T12:36:13,463 adding 'htmd/latest.py' 2026-04-22T12:36:13,464 adding 'htmd/license.py' 2026-04-22T12:36:13,471 adding 'htmd/metricdata.py' 2026-04-22T12:36:13,474 adding 'htmd/metricdatagenerator.py' 2026-04-22T12:36:13,483 adding 'htmd/model.py' 2026-04-22T12:36:13,486 adding 'htmd/mutualinformation.py' 2026-04-22T12:36:13,487 adding 'htmd/parallelprogress.py' 2026-04-22T12:36:13,490 adding 'htmd/pathplanning.py' 2026-04-22T12:36:13,492 adding 'htmd/session.py' 2026-04-22T12:36:13,495 adding 'htmd/simlist.py' 2026-04-22T12:36:13,497 adding 'htmd/ui.py' 2026-04-22T12:36:13,499 adding 'htmd/units.py' 2026-04-22T12:36:13,501 adding 'htmd/util.py' 2026-04-22T12:36:13,503 adding 'htmd/versionwarnings.py' 2026-04-22T12:36:13,505 adding 'htmd/adaptive/__init__.py' 2026-04-22T12:36:13,508 adding 'htmd/adaptive/adaptive.py' 2026-04-22T12:36:13,511 adding 'htmd/adaptive/adaptivebandit.py' 2026-04-22T12:36:13,515 adding 'htmd/adaptive/adaptivegoal.py' 2026-04-22T12:36:13,518 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-04-22T12:36:13,521 adding 'htmd/adaptive/adaptiverun.py' 2026-04-22T12:36:13,523 adding 'htmd/adaptive/util.py' 2026-04-22T12:36:13,525 adding 'htmd/builder/__init__.py' 2026-04-22T12:36:13,533 adding 'htmd/builder/amber.py' 2026-04-22T12:36:13,536 adding 'htmd/builder/builder.py' 2026-04-22T12:36:13,542 adding 'htmd/builder/charmm.py' 2026-04-22T12:36:13,545 adding 'htmd/builder/ionize.py' 2026-04-22T12:36:13,547 adding 'htmd/builder/loopmodeler.py' 2026-04-22T12:36:13,550 adding 'htmd/builder/noncanonical.py' 2026-04-22T12:36:13,553 adding 'htmd/builder/solvate.py' 2026-04-22T12:36:13,555 adding 'htmd/clustering/__init__.py' 2026-04-22T12:36:13,557 adding 'htmd/clustering/kcenters.py' 2026-04-22T12:36:13,559 adding 'htmd/clustering/regular.py' 2026-04-22T12:36:13,561 adding 'htmd/membranebuilder/__init__.py' 2026-04-22T12:36:13,563 adding 'htmd/membranebuilder/build_membrane.py' 2026-04-22T12:36:13,565 adding 'htmd/membranebuilder/globalminimization.py' 2026-04-22T12:36:13,566 adding 'htmd/membranebuilder/ljfluid.py' 2026-04-22T12:36:13,568 adding 'htmd/membranebuilder/ringpenetration.py' 2026-04-22T12:36:13,570 adding 'htmd/projections/__init__.py' 2026-04-22T12:36:13,571 adding 'htmd/projections/gwpca.py' 2026-04-22T12:36:13,573 adding 'htmd/projections/kmeanstri.py' 2026-04-22T12:36:13,575 adding 'htmd/projections/metric.py' 2026-04-22T12:36:13,577 adding 'htmd/projections/tica.py' 2026-04-22T12:36:13,634 adding 'htmd/share/license-checker' 2026-04-22T12:36:13,667 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-04-22T12:36:13,669 adding 'htmd/share/builder/triala_capped.cif' 2026-04-22T12:36:13,671 adding 'htmd/share/builder/triala_capped.mmtf' 2026-04-22T12:36:13,673 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-04-22T12:36:13,675 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-04-22T12:36:13,676 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-04-22T12:36:13,678 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-04-22T12:36:13,679 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-04-22T12:36:13,681 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-04-22T12:36:13,682 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-04-22T12:36:13,684 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-04-22T12:36:13,685 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-04-22T12:36:13,686 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-04-22T12:36:13,688 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-04-22T12:36:13,689 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-04-22T12:36:13,691 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-04-22T12:36:13,692 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-04-22T12:36:13,693 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-04-22T12:36:13,695 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-04-22T12:36:13,696 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-04-22T12:36:13,698 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-04-22T12:36:13,700 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-04-22T12:36:13,701 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-04-22T12:36:13,703 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-04-22T12:36:13,711 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-04-22T12:36:13,715 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-04-22T12:36:13,717 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-04-22T12:36:13,718 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-04-22T12:36:13,719 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-04-22T12:36:13,720 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-04-22T12:36:13,721 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-04-22T12:36:13,722 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-04-22T12:36:13,724 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-04-22T12:36:13,725 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-04-22T12:36:13,726 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-04-22T12:36:13,728 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-04-22T12:36:13,729 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-04-22T12:36:13,730 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-04-22T12:36:13,731 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-04-22T12:36:13,733 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-04-22T12:36:13,734 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-04-22T12:36:13,735 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-04-22T12:36:13,737 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-04-22T12:36:13,738 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-04-22T12:36:13,739 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-04-22T12:36:13,740 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-04-22T12:36:13,742 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-04-22T12:36:13,743 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-04-22T12:36:13,744 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-04-22T12:36:13,745 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-04-22T12:36:13,747 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-04-22T12:36:13,748 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-04-22T12:36:13,749 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-04-22T12:36:13,750 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-04-22T12:36:13,752 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-04-22T12:36:13,753 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-04-22T12:36:13,754 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-04-22T12:36:13,755 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-04-22T12:36:13,757 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-04-22T12:36:13,758 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-04-22T12:36:13,760 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-04-22T12:36:13,761 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-04-22T12:36:13,762 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-04-22T12:36:13,763 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-04-22T12:36:13,764 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-04-22T12:36:13,765 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-04-22T12:36:13,767 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-04-22T12:36:13,768 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-04-22T12:36:13,769 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-04-22T12:36:13,770 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-04-22T12:36:13,771 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-04-22T12:36:13,772 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-04-22T12:36:13,774 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-04-22T12:36:13,775 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-04-22T12:36:13,776 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-04-22T12:36:13,777 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-04-22T12:36:13,778 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-04-22T12:36:13,779 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-04-22T12:36:13,781 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-04-22T12:36:13,782 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-04-22T12:36:13,783 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-04-22T12:36:13,784 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-04-22T12:36:13,786 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-04-22T12:36:13,787 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-04-22T12:36:13,788 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-04-22T12:36:13,789 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-04-22T12:36:13,791 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-04-22T12:36:13,792 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-04-22T12:36:13,793 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-04-22T12:36:13,794 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-04-22T12:36:13,796 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-04-22T12:36:13,797 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-04-22T12:36:13,798 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-04-22T12:36:13,799 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-04-22T12:36:13,801 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-04-22T12:36:13,802 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-04-22T12:36:13,803 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-04-22T12:36:13,804 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-04-22T12:36:13,806 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-04-22T12:36:13,807 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-04-22T12:36:13,808 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-04-22T12:36:13,810 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-04-22T12:36:13,811 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-04-22T12:36:13,812 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-04-22T12:36:13,813 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-04-22T12:36:13,815 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-04-22T12:36:13,816 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-04-22T12:36:13,817 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-04-22T12:36:13,819 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-04-22T12:36:13,820 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-04-22T12:36:13,821 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-04-22T12:36:13,822 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-04-22T12:36:13,824 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-04-22T12:36:13,825 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-04-22T12:36:13,826 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-04-22T12:36:13,827 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-04-22T12:36:13,828 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-04-22T12:36:13,829 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-04-22T12:36:13,830 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-04-22T12:36:13,831 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-04-22T12:36:13,833 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-04-22T12:36:13,834 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-04-22T12:36:13,835 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-04-22T12:36:13,836 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-04-22T12:36:13,838 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-04-22T12:36:13,839 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-04-22T12:36:13,840 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-04-22T12:36:13,841 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-04-22T12:36:13,842 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-04-22T12:36:13,844 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-04-22T12:36:13,845 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-04-22T12:36:13,846 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-04-22T12:36:13,847 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-04-22T12:36:13,848 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-04-22T12:36:13,850 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-04-22T12:36:13,851 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-04-22T12:36:13,852 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-04-22T12:36:13,853 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-04-22T12:36:13,855 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-04-22T12:36:13,856 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-04-22T12:36:13,857 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-04-22T12:36:13,858 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-04-22T12:36:13,860 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-04-22T12:36:13,861 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-04-22T12:36:13,862 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-04-22T12:36:13,864 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-04-22T12:36:13,865 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-04-22T12:36:13,866 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-04-22T12:36:13,867 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-04-22T12:36:13,869 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-04-22T12:36:13,870 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-04-22T12:36:13,871 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-04-22T12:36:13,873 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-04-22T12:36:13,874 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-04-22T12:36:13,875 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-04-22T12:36:13,877 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-04-22T12:36:13,898 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-04-22T12:36:13,900 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-04-22T12:36:13,902 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-04-22T12:36:13,907 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-04-22T12:36:13,908 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-04-22T12:36:13,910 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-04-22T12:36:13,912 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-04-22T12:36:13,914 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-04-22T12:36:13,915 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-04-22T12:36:13,916 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-04-22T12:36:13,917 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-04-22T12:36:13,919 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-04-22T12:36:13,920 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-04-22T12:36:13,921 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-04-22T12:36:13,923 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-04-22T12:36:13,924 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-04-22T12:36:13,925 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-04-22T12:36:13,926 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-04-22T12:36:13,928 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-04-22T12:36:13,929 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-04-22T12:36:13,930 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-04-22T12:36:13,931 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-04-22T12:36:13,933 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-04-22T12:36:13,934 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-04-22T12:36:13,935 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-04-22T12:36:13,936 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-04-22T12:36:13,938 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-04-22T12:36:13,939 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-04-22T12:36:13,940 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-04-22T12:36:13,941 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-04-22T12:36:13,943 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-04-22T12:36:13,944 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-04-22T12:36:13,945 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-04-22T12:36:13,946 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-04-22T12:36:13,948 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-04-22T12:36:13,949 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-04-22T12:36:13,950 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-04-22T12:36:13,951 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-04-22T12:36:13,953 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-04-22T12:36:13,954 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-04-22T12:36:13,955 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-04-22T12:36:13,956 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-04-22T12:36:13,958 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-04-22T12:36:13,959 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-04-22T12:36:13,961 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-04-22T12:36:13,962 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-04-22T12:36:13,966 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-04-22T12:36:13,967 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-04-22T12:36:13,969 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-04-22T12:36:13,970 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-04-22T12:36:13,971 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-04-22T12:36:13,972 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-04-22T12:36:13,973 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-04-22T12:36:13,975 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-04-22T12:36:13,983 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-04-22T12:36:13,985 adding 'htmd/share/builder/caps/ACE.cif' 2026-04-22T12:36:13,986 adding 'htmd/share/builder/caps/ACE.pdb' 2026-04-22T12:36:13,988 adding 'htmd/share/builder/caps/NHE.pdb' 2026-04-22T12:36:13,989 adding 'htmd/share/builder/caps/NME.cif' 2026-04-22T12:36:13,990 adding 'htmd/share/builder/caps/NME.pdb' 2026-04-22T12:36:13,992 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-04-22T12:36:13,993 adding 'htmd/share/builder/charmmfiles/README.md' 2026-04-22T12:36:14,007 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-04-22T12:36:14,022 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-04-22T12:36:14,025 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-04-22T12:36:14,040 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-04-22T12:36:14,128 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-04-22T12:36:14,137 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-04-22T12:36:14,141 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-04-22T12:36:14,149 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-04-22T12:36:14,164 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-04-22T12:36:14,167 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-04-22T12:36:14,170 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-04-22T12:36:14,252 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-04-22T12:36:14,261 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-04-22T12:36:14,395 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-04-22T12:36:14,422 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-04-22T12:36:14,437 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-04-22T12:36:14,441 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-04-22T12:36:14,479 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-04-22T12:36:14,511 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-04-22T12:36:14,620 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-04-22T12:36:14,626 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-04-22T12:36:14,639 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-04-22T12:36:14,646 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-04-22T12:36:14,738 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-04-22T12:36:14,763 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-04-22T12:36:14,784 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-04-22T12:36:14,876 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-04-22T12:36:14,887 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-04-22T12:36:15,154 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-04-22T12:36:15,271 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-04-22T12:36:15,333 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-04-22T12:36:15,349 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-04-22T12:36:15,358 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-04-22T12:36:15,375 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-04-22T12:36:15,386 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-04-22T12:36:15,394 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-04-22T12:36:15,397 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-04-22T12:36:15,398 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-04-22T12:36:15,400 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-04-22T12:36:15,401 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-04-22T12:36:15,404 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-04-22T12:36:15,418 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-04-22T12:36:15,446 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-04-22T12:36:15,467 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-04-22T12:36:15,473 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-04-22T12:36:15,606 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-04-22T12:36:15,743 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-04-22T12:36:15,752 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-04-22T12:36:15,755 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-04-22T12:36:15,767 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-04-22T12:36:15,791 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-04-22T12:36:15,795 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-04-22T12:36:15,798 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-04-22T12:36:15,801 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-04-22T12:36:15,811 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-04-22T12:36:16,011 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-04-22T12:36:16,032 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-04-22T12:36:16,037 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-04-22T12:36:16,046 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-04-22T12:36:16,055 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-04-22T12:36:16,065 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-04-22T12:36:16,071 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-04-22T12:36:16,097 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-04-22T12:36:16,403 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-04-22T12:36:16,482 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-04-22T12:36:16,531 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-04-22T12:36:16,538 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-04-22T12:36:16,548 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-04-22T12:36:16,550 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-04-22T12:36:16,552 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-04-22T12:36:16,554 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb' 2026-04-22T12:36:16,556 adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb' 2026-04-22T12:36:16,559 adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb' 2026-04-22T12:36:16,858 adding 'htmd/share/solvate/wat.pdb' 2026-04-22T12:36:16,873 adding 'acellera_htmd-2.6.4.dist-info/METADATA' 2026-04-22T12:36:16,874 adding 'acellera_htmd-2.6.4.dist-info/WHEEL' 2026-04-22T12:36:16,875 adding 'acellera_htmd-2.6.4.dist-info/entry_points.txt' 2026-04-22T12:36:16,876 adding 'acellera_htmd-2.6.4.dist-info/top_level.txt' 2026-04-22T12:36:16,881 adding 'acellera_htmd-2.6.4.dist-info/RECORD' 2026-04-22T12:36:16,940 removing build/bdist.linux-armv7l/wheel 2026-04-22T12:36:17,136 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-04-22T12:36:17,249 Created wheel for acellera-htmd: filename=acellera_htmd-2.6.4-py3-none-any.whl size=4269286 sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 2026-04-22T12:36:17,250 Stored in directory: /tmp/pip-ephem-wheel-cache-imtodb9f/wheels/16/7f/b4/3e1467dfa063c4b74ed2102cd25ae5d9d63ca3f10acb1aeabf 2026-04-22T12:36:17,272 Successfully built acellera-htmd 2026-04-22T12:36:17,371 Removed build tracker: '/tmp/pip-build-tracker-tb06vtmz'