2026-04-22T14:16:07,984 Created temporary directory: /tmp/pip-ephem-wheel-cache-jisaof91
2026-04-22T14:16:07,986 Created temporary directory: /tmp/pip-build-tracker-w1xi5cpm
2026-04-22T14:16:07,986 Initialized build tracking at /tmp/pip-build-tracker-w1xi5cpm
2026-04-22T14:16:07,987 Created build tracker: /tmp/pip-build-tracker-w1xi5cpm
2026-04-22T14:16:07,987 Entered build tracker: /tmp/pip-build-tracker-w1xi5cpm
2026-04-22T14:16:07,988 Created temporary directory: /tmp/pip-wheel-k_uspd5_
2026-04-22T14:16:07,990 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-22T14:16:07,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-7zxvoaca
2026-04-22T14:16:08,017 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-22T14:16:08,020 2 location(s) to search for versions of pilotpy:
2026-04-22T14:16:08,020 * https://pypi.org/simple/pilotpy/
2026-04-22T14:16:08,020 * https://www.piwheels.org/simple/pilotpy/
2026-04-22T14:16:08,021 Fetching project page and analyzing links: https://pypi.org/simple/pilotpy/
2026-04-22T14:16:08,022 Getting page https://pypi.org/simple/pilotpy/
2026-04-22T14:16:08,023 Found index url https://pypi.org/simple
2026-04-22T14:16:08,254 Fetched page https://pypi.org/simple/pilotpy/ as application/vnd.pypi.simple.v1+json
2026-04-22T14:16:08,256   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/53/cb/57c2d519de7d8e39d820dacda879e3a5b714806fb5581e8c85292b772d2d/pilotpy-2.0.6-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T14:16:08,257   Link requires a different Python (3.11.2 not in: '==3.11.5'): https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T14:16:08,258   Skipping link: 2.0.6 Requires-Python ==3.11.5: https://files.pythonhosted.org/packages/5e/0f/893bb22d31be44eda89acb10da271efd3c2d38544d95c0dcdd1f49b85a1d/pilotpy-2.0.6.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:==3.11.5)
2026-04-22T14:16:08,258   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/2d/b4/b280fe57ece1b9f1cca5b9fb0659f32731a635836d98a1440341b9a023ef/pilotpy-2.0.7-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T14:16:08,259   Link requires a different Python (3.11.2 not in: '>=3.14.3'): https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T14:16:08,260   Skipping link: 2.0.7 Requires-Python >=3.14.3: https://files.pythonhosted.org/packages/fa/c6/dd74b1167029a41d39ef526bc519b080d88a8fb43b7f416456173550e764/pilotpy-2.0.7.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.14.3)
2026-04-22T14:16:08,260   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/86/71/f5552dbb8a0e33ca2a3668633cb8ea654f482610ba45d09df64592735f68/pilotpy-2.0.8-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-04-22T14:16:08,261   Found link https://files.pythonhosted.org/packages/56/cc/0bb5e066c6004e969d4859dd464f2ea975504b1a9553e0877a8cef79de0c/pilotpy-2.0.8.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.8
2026-04-22T14:16:08,262   Skipping link: No binaries permitted for pilotpy: https://files.pythonhosted.org/packages/81/f2/de1bfbee3779551615ed61bcd87594b50dfa3610dccfa207a2ce672fb9b0/pilotpy-2.0.9-py3-none-any.whl (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9)
2026-04-22T14:16:08,263   Found link https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz (from https://pypi.org/simple/pilotpy/) (requires-python:>=3.9), version: 2.0.9
2026-04-22T14:16:08,264 Fetching project page and analyzing links: https://www.piwheels.org/simple/pilotpy/
2026-04-22T14:16:08,264 Getting page https://www.piwheels.org/simple/pilotpy/
2026-04-22T14:16:08,265 Found index url https://www.piwheels.org/simple
2026-04-22T14:16:08,439 Fetched page https://www.piwheels.org/simple/pilotpy/ as text/html
2026-04-22T14:16:08,441   Skipping link: No binaries permitted for pilotpy: https://www.piwheels.org/simple/pilotpy/pilotpy-2.0.8-py3-none-any.whl#sha256=b6401ab4d888e85593008a2ab52cede509be8d14869c8c311a0253f024da6c72 (from https://www.piwheels.org/simple/pilotpy/) (requires-python:>=3.9)
2026-04-22T14:16:08,442 Skipping link: not a file: https://www.piwheels.org/simple/pilotpy/
2026-04-22T14:16:08,442 Skipping link: not a file: https://pypi.org/simple/pilotpy/
2026-04-22T14:16:08,462 Given no hashes to check 1 links for project 'pilotpy': discarding no candidates
2026-04-22T14:16:08,482 Collecting pilotpy==2.0.9
2026-04-22T14:16:08,484   Created temporary directory: /tmp/pip-unpack-jxrzv9fa
2026-04-22T14:16:08,710   Downloading pilotpy-2.0.9.tar.gz (72 kB)
2026-04-22T14:16:08,837   Added pilotpy==2.0.9 from https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-w1xi5cpm'
2026-04-22T14:16:08,839   Running setup.py (path:/tmp/pip-wheel-k_uspd5_/pilotpy_13ad9f95e26741039f03183381f16c7e/setup.py) egg_info for package pilotpy
2026-04-22T14:16:08,840   Created temporary directory: /tmp/pip-pip-egg-info-hqmsm35n
2026-04-22T14:16:08,841   Preparing metadata (setup.py): started
2026-04-22T14:16:08,842   Running command python setup.py egg_info
2026-04-22T14:16:09,723   running egg_info
2026-04-22T14:16:09,750   creating /tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info
2026-04-22T14:16:09,751   writing /tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/PKG-INFO
2026-04-22T14:16:09,754   writing dependency_links to /tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/dependency_links.txt
2026-04-22T14:16:09,757   writing requirements to /tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/requires.txt
2026-04-22T14:16:09,758   writing top-level names to /tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/top_level.txt
2026-04-22T14:16:09,760   writing manifest file '/tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/SOURCES.txt'
2026-04-22T14:16:09,849   reading manifest file '/tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/SOURCES.txt'
2026-04-22T14:16:09,852   adding license file 'LICENSE'
2026-04-22T14:16:09,854   writing manifest file '/tmp/pip-pip-egg-info-hqmsm35n/pilotpy.egg-info/SOURCES.txt'
2026-04-22T14:16:09,961   Preparing metadata (setup.py): finished with status 'done'
2026-04-22T14:16:09,966   Source in /tmp/pip-wheel-k_uspd5_/pilotpy_13ad9f95e26741039f03183381f16c7e has version 2.0.9, which satisfies requirement pilotpy==2.0.9 from https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz
2026-04-22T14:16:09,967   Removed pilotpy==2.0.9 from https://files.pythonhosted.org/packages/d9/c9/8c2322259049024ba09e4e01bbd7b5a80bb7efe86e1fd21c0df7eaf87e9f/pilotpy-2.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-w1xi5cpm'
2026-04-22T14:16:09,973 Created temporary directory: /tmp/pip-unpack-bu0eei0l
2026-04-22T14:16:09,974 Building wheels for collected packages: pilotpy
2026-04-22T14:16:09,979   Created temporary directory: /tmp/pip-wheel-lotddp8_
2026-04-22T14:16:09,979   Building wheel for pilotpy (setup.py): started
2026-04-22T14:16:09,981   Destination directory: /tmp/pip-wheel-lotddp8_
2026-04-22T14:16:09,981   Running command python setup.py bdist_wheel
2026-04-22T14:16:10,809   running bdist_wheel
2026-04-22T14:16:10,939   running build
2026-04-22T14:16:10,940   running build_py
2026-04-22T14:16:10,972   creating build/lib/pilotpy
2026-04-22T14:16:10,974   copying pilotpy/tl.py -> build/lib/pilotpy
2026-04-22T14:16:10,976   copying pilotpy/__init__.py -> build/lib/pilotpy
2026-04-22T14:16:10,978   copying pilotpy/pl.py -> build/lib/pilotpy
2026-04-22T14:16:10,981   creating build/lib/pilotpy/plot
2026-04-22T14:16:10,982   copying pilotpy/plot/pseudobulk_DE_analysis.py -> build/lib/pilotpy/plot
2026-04-22T14:16:10,984   copying pilotpy/plot/curve_activity.py -> build/lib/pilotpy/plot
2026-04-22T14:16:10,986   copying pilotpy/plot/__init__.py -> build/lib/pilotpy/plot
2026-04-22T14:16:10,988   copying pilotpy/plot/ploting.py -> build/lib/pilotpy/plot
2026-04-22T14:16:10,992   copying pilotpy/plot/gene_selection_analysis.py -> build/lib/pilotpy/plot
2026-04-22T14:16:10,995   creating build/lib/pilotpy/tools
2026-04-22T14:16:10,996   copying pilotpy/tools/Gene_cluster_specific.py -> build/lib/pilotpy/tools
2026-04-22T14:16:10,999   copying pilotpy/tools/__init__.py -> build/lib/pilotpy/tools
2026-04-22T14:16:11,000   copying pilotpy/tools/Cell_gene_selection.py -> build/lib/pilotpy/tools
2026-04-22T14:16:11,003   copying pilotpy/tools/Gene_cluster_specific_functions.py -> build/lib/pilotpy/tools
2026-04-22T14:16:11,006   copying pilotpy/tools/Trajectory.py -> build/lib/pilotpy/tools
2026-04-22T14:16:11,010   copying pilotpy/tools/patients_sub_clustering.py -> build/lib/pilotpy/tools
2026-04-22T14:16:11,042   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-04-22T14:16:11,043   !!

2026-04-22T14:16:11,044           ********************************************************************************
2026-04-22T14:16:11,044           Please avoid running ``setup.py`` directly.
2026-04-22T14:16:11,045           Instead, use pypa/build, pypa/installer or other
2026-04-22T14:16:11,045           standards-based tools.

2026-04-22T14:16:11,046           This deprecation is overdue, please update your project and remove deprecated
2026-04-22T14:16:11,047           calls to avoid build errors in the future.

2026-04-22T14:16:11,048           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-04-22T14:16:11,048           ********************************************************************************

2026-04-22T14:16:11,049   !!
2026-04-22T14:16:11,050     self.initialize_options()
2026-04-22T14:16:11,071   installing to build/bdist.linux-armv7l/wheel
2026-04-22T14:16:11,071   running install
2026-04-22T14:16:11,094   running install_lib
2026-04-22T14:16:11,121   creating build/bdist.linux-armv7l/wheel
2026-04-22T14:16:11,123   creating build/bdist.linux-armv7l/wheel/pilotpy
2026-04-22T14:16:11,124   copying build/lib/pilotpy/tl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T14:16:11,126   creating build/bdist.linux-armv7l/wheel/pilotpy/plot
2026-04-22T14:16:11,127   copying build/lib/pilotpy/plot/pseudobulk_DE_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T14:16:11,130   copying build/lib/pilotpy/plot/curve_activity.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T14:16:11,132   copying build/lib/pilotpy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T14:16:11,134   copying build/lib/pilotpy/plot/ploting.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T14:16:11,137   copying build/lib/pilotpy/plot/gene_selection_analysis.py -> build/bdist.linux-armv7l/wheel/./pilotpy/plot
2026-04-22T14:16:11,140   copying build/lib/pilotpy/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T14:16:11,142   copying build/lib/pilotpy/pl.py -> build/bdist.linux-armv7l/wheel/./pilotpy
2026-04-22T14:16:11,144   creating build/bdist.linux-armv7l/wheel/pilotpy/tools
2026-04-22T14:16:11,145   copying build/lib/pilotpy/tools/Gene_cluster_specific.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,148   copying build/lib/pilotpy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,149   copying build/lib/pilotpy/tools/Cell_gene_selection.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,152   copying build/lib/pilotpy/tools/Gene_cluster_specific_functions.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,155   copying build/lib/pilotpy/tools/Trajectory.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,158   copying build/lib/pilotpy/tools/patients_sub_clustering.py -> build/bdist.linux-armv7l/wheel/./pilotpy/tools
2026-04-22T14:16:11,160   running install_egg_info
2026-04-22T14:16:11,195   running egg_info
2026-04-22T14:16:11,221   writing pilotpy.egg-info/PKG-INFO
2026-04-22T14:16:11,225   writing dependency_links to pilotpy.egg-info/dependency_links.txt
2026-04-22T14:16:11,227   writing requirements to pilotpy.egg-info/requires.txt
2026-04-22T14:16:11,228   writing top-level names to pilotpy.egg-info/top_level.txt
2026-04-22T14:16:11,259   reading manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-04-22T14:16:11,262   adding license file 'LICENSE'
2026-04-22T14:16:11,266   writing manifest file 'pilotpy.egg-info/SOURCES.txt'
2026-04-22T14:16:11,267   Copying pilotpy.egg-info to build/bdist.linux-armv7l/wheel/./pilotpy-2.0.9-py3.11.egg-info
2026-04-22T14:16:11,277   running install_scripts
2026-04-22T14:16:11,289   creating build/bdist.linux-armv7l/wheel/pilotpy-2.0.9.dist-info/WHEEL
2026-04-22T14:16:11,291   creating '/tmp/pip-wheel-lotddp8_/pilotpy-2.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-22T14:16:11,294   adding 'pilotpy/__init__.py'
2026-04-22T14:16:11,295   adding 'pilotpy/pl.py'
2026-04-22T14:16:11,296   adding 'pilotpy/tl.py'
2026-04-22T14:16:11,298   adding 'pilotpy/plot/__init__.py'
2026-04-22T14:16:11,299   adding 'pilotpy/plot/curve_activity.py'
2026-04-22T14:16:11,304   adding 'pilotpy/plot/gene_selection_analysis.py'
2026-04-22T14:16:11,315   adding 'pilotpy/plot/ploting.py'
2026-04-22T14:16:11,318   adding 'pilotpy/plot/pseudobulk_DE_analysis.py'
2026-04-22T14:16:11,322   adding 'pilotpy/tools/Cell_gene_selection.py'
2026-04-22T14:16:11,324   adding 'pilotpy/tools/Gene_cluster_specific.py'
2026-04-22T14:16:11,327   adding 'pilotpy/tools/Gene_cluster_specific_functions.py'
2026-04-22T14:16:11,335   adding 'pilotpy/tools/Trajectory.py'
2026-04-22T14:16:11,336   adding 'pilotpy/tools/__init__.py'
2026-04-22T14:16:11,338   adding 'pilotpy/tools/patients_sub_clustering.py'
2026-04-22T14:16:11,341   adding 'pilotpy-2.0.9.dist-info/licenses/LICENSE'
2026-04-22T14:16:11,342   adding 'pilotpy-2.0.9.dist-info/METADATA'
2026-04-22T14:16:11,343   adding 'pilotpy-2.0.9.dist-info/WHEEL'
2026-04-22T14:16:11,344   adding 'pilotpy-2.0.9.dist-info/top_level.txt'
2026-04-22T14:16:11,345   adding 'pilotpy-2.0.9.dist-info/RECORD'
2026-04-22T14:16:11,347   removing build/bdist.linux-armv7l/wheel
2026-04-22T14:16:11,463   Building wheel for pilotpy (setup.py): finished with status 'done'
2026-04-22T14:16:11,466   Created wheel for pilotpy: filename=pilotpy-2.0.9-py3-none-any.whl size=75579 sha256=dbe5605eaaaf655b9c25fc0b1567e4dfe98f76cb65f16a0b9fc0027164dfe39c
2026-04-22T14:16:11,467   Stored in directory: /tmp/pip-ephem-wheel-cache-7zxvoaca/wheels/fc/af/a8/cd310a2b8d547eb74da16bfccdceab1986cc6aadb036826b65
2026-04-22T14:16:11,478 Successfully built pilotpy
2026-04-22T14:16:11,483 Removed build tracker: '/tmp/pip-build-tracker-w1xi5cpm'