2026-04-23T20:44:45,880 Created temporary directory: /tmp/pip-ephem-wheel-cache-n43og9xk 2026-04-23T20:44:45,882 Created temporary directory: /tmp/pip-build-tracker-9gog3pwk 2026-04-23T20:44:45,882 Initialized build tracking at /tmp/pip-build-tracker-9gog3pwk 2026-04-23T20:44:45,883 Created build tracker: /tmp/pip-build-tracker-9gog3pwk 2026-04-23T20:44:45,883 Entered build tracker: /tmp/pip-build-tracker-9gog3pwk 2026-04-23T20:44:45,884 Created temporary directory: /tmp/pip-wheel-hs2v4rrj 2026-04-23T20:44:45,887 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-23T20:44:45,890 Created temporary directory: /tmp/pip-ephem-wheel-cache-66llqz7w 2026-04-23T20:44:45,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-23T20:44:45,916 2 location(s) to search for versions of acellera-htmd: 2026-04-23T20:44:45,916 * https://pypi.org/simple/acellera-htmd/ 2026-04-23T20:44:45,916 * https://www.piwheels.org/simple/acellera-htmd/ 2026-04-23T20:44:45,916 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-04-23T20:44:45,917 Getting page https://pypi.org/simple/acellera-htmd/ 2026-04-23T20:44:45,919 Found index url https://pypi.org/simple 2026-04-23T20:44:46,147 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-04-23T20:44:46,151 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-04-23T20:44:46,151 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-04-23T20:44:46,152 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-04-23T20:44:46,153 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-04-23T20:44:46,154 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-04-23T20:44:46,155 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-04-23T20:44:46,156 Found link https://files.pythonhosted.org/packages/53/f3/0909deceb5515bce2a09c1bd405aa154ce25c2a9c9ee0955ef8b684b1b4e/acellera_htmd-2.6.0.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.0 2026-04-23T20:44:46,157 Found link https://files.pythonhosted.org/packages/c3/49/1143b30c950f6e2e2af252e852d5ebdb7e85bed42e351f8250032daed81f/acellera_htmd-2.6.1.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.1 2026-04-23T20:44:46,157 Found link https://files.pythonhosted.org/packages/c1/a1/f5fbc5f195c51b6270957d68aafa8f53e8001e3e0a19ebccd301e9312de7/acellera_htmd-2.6.2.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.2 2026-04-23T20:44:46,158 Found link https://files.pythonhosted.org/packages/68/1c/5d0cce9b91721e2a2d6a24740ec88a1654d33e348448877bddc152983d50/acellera_htmd-2.6.3.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.3 2026-04-23T20:44:46,159 Found link https://files.pythonhosted.org/packages/32/97/a890bdbce9fa31db1062c47e282ef4fefd6b03359e758f898102e34e2b84/acellera_htmd-2.6.4.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.4 2026-04-23T20:44:46,161 Found link https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.6.5 2026-04-23T20:44:46,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-23T20:44:46,162 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-04-23T20:44:46,163 Found index url https://www.piwheels.org/simple 2026-04-23T20:44:46,347 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-04-23T20:44:46,350 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.4-py3-none-any.whl#sha256=66c7d8d0f505d9c4515b9d989a0710120d27ef39bb24537b9729224bf711dcb6 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,351 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.3-py3-none-any.whl#sha256=32d22acbcd9e7adb5730ba97d1fe4de785a0814f14fd802980d53208fc6e291b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,351 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.2-py3-none-any.whl#sha256=eb4bab0a119829d1bc40fbb9918fd5ca3ed48922a4ebe7228717cf8de4aa1427 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,352 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.1-py3-none-any.whl#sha256=276acfba7f712b652f35f6ce7279fe2885edf66bce30142e45deb90188a58cfb (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,353 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.6.0-py3-none-any.whl#sha256=3490bfd57e9749c4dec60d86755e1ddbe9b92c9d7ae74c7aafaf9de45462c2e2 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,353 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.9-py3-none-any.whl#sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,354 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-04-23T20:44:46,354 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-04-23T20:44:46,355 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-04-23T20:44:46,355 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-04-23T20:44:46,377 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-04-23T20:44:46,396 Collecting acellera-htmd==2.6.5 2026-04-23T20:44:46,399 Created temporary directory: /tmp/pip-unpack-xwe796id 2026-04-23T20:44:46,646 Downloading acellera_htmd-2.6.5.tar.gz (4.0 MB) 2026-04-23T20:44:48,711 Added acellera-htmd==2.6.5 from https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz to build tracker '/tmp/pip-build-tracker-9gog3pwk' 2026-04-23T20:44:48,717 Created temporary directory: /tmp/pip-build-env-zb6n7p02 2026-04-23T20:44:48,722 Installing build dependencies: started 2026-04-23T20:44:48,723 Running command pip subprocess to install build dependencies 2026-04-23T20:44:49,903 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-23T20:44:50,392 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-23T20:44:50,414 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-23T20:44:52,190 Collecting setuptools 2026-04-23T20:44:52,286 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-23T20:44:52,673 Collecting setuptools-scm>=8 2026-04-23T20:44:52,689 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-23T20:44:52,776 Collecting vcs-versioning>=1.0.0.dev0 2026-04-23T20:44:52,795 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-23T20:44:52,980 Collecting packaging>=20 2026-04-23T20:44:52,998 Using cached https://www.piwheels.org/simple/packaging/packaging-26.1-py3-none-any.whl (95 kB) 2026-04-23T20:44:56,018 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-23T20:44:59,639 Creating /tmp/pip-build-env-zb6n7p02/overlay/local/bin 2026-04-23T20:44:59,642 changing mode of /tmp/pip-build-env-zb6n7p02/overlay/local/bin/vcs-versioning to 755 2026-04-23T20:44:59,753 changing mode of /tmp/pip-build-env-zb6n7p02/overlay/local/bin/setuptools-scm to 755 2026-04-23T20:44:59,781 Successfully installed packaging-26.1 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-23T20:45:00,068 Installing build dependencies: finished with status 'done' 2026-04-23T20:45:00,074 Getting requirements to build wheel: started 2026-04-23T20:45:00,075 Running command Getting requirements to build wheel 2026-04-23T20:45:00,899 running egg_info 2026-04-23T20:45:00,907 writing acellera_htmd.egg-info/PKG-INFO 2026-04-23T20:45:00,912 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-23T20:45:00,913 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-23T20:45:00,917 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-23T20:45:00,919 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-23T20:45:01,005 /tmp/pip-build-env-zb6n7p02/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-23T20:45:01,006 return get_active_overrides().subprocess_timeout 2026-04-23T20:45:01,014 listing git files failed - pretending there aren't any 2026-04-23T20:45:01,019 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:01,039 reading manifest template 'MANIFEST.in' 2026-04-23T20:45:01,058 no previously-included directories found matching 'htmd/data' 2026-04-23T20:45:01,059 no previously-included directories found matching '.github' 2026-04-23T20:45:01,061 no previously-included directories found matching 'doc' 2026-04-23T20:45:01,062 no previously-included directories found matching 'package' 2026-04-23T20:45:01,063 no previously-included directories found matching 'tests' 2026-04-23T20:45:01,065 no previously-included directories found matching 'tutorials' 2026-04-23T20:45:01,066 warning: no previously-included files found matching 'Makefile' 2026-04-23T20:45:01,067 adding license file 'LICENSE' 2026-04-23T20:45:01,088 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:01,195 Getting requirements to build wheel: finished with status 'done' 2026-04-23T20:45:01,198 Created temporary directory: /tmp/pip-modern-metadata-_vyamoq0 2026-04-23T20:45:01,201 Preparing metadata (pyproject.toml): started 2026-04-23T20:45:01,202 Running command Preparing metadata (pyproject.toml) 2026-04-23T20:45:01,974 running dist_info 2026-04-23T20:45:01,988 creating /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info 2026-04-23T20:45:01,989 writing /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/PKG-INFO 2026-04-23T20:45:01,994 writing dependency_links to /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/dependency_links.txt 2026-04-23T20:45:01,996 writing entry points to /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/entry_points.txt 2026-04-23T20:45:01,999 writing requirements to /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/requires.txt 2026-04-23T20:45:02,000 writing top-level names to /tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/top_level.txt 2026-04-23T20:45:02,002 writing manifest file '/tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:02,076 /tmp/pip-build-env-zb6n7p02/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-23T20:45:02,077 return get_active_overrides().subprocess_timeout 2026-04-23T20:45:02,083 listing git files failed - pretending there aren't any 2026-04-23T20:45:02,088 reading manifest file '/tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:02,090 reading manifest template 'MANIFEST.in' 2026-04-23T20:45:02,108 no previously-included directories found matching 'htmd/data' 2026-04-23T20:45:02,109 no previously-included directories found matching '.github' 2026-04-23T20:45:02,110 no previously-included directories found matching 'doc' 2026-04-23T20:45:02,111 no previously-included directories found matching 'package' 2026-04-23T20:45:02,111 no previously-included directories found matching 'tests' 2026-04-23T20:45:02,112 no previously-included directories found matching 'tutorials' 2026-04-23T20:45:02,113 warning: no previously-included files found matching 'Makefile' 2026-04-23T20:45:02,114 adding license file 'LICENSE' 2026-04-23T20:45:02,131 writing manifest file '/tmp/pip-modern-metadata-_vyamoq0/acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:02,133 creating '/tmp/pip-modern-metadata-_vyamoq0/acellera_htmd-2.6.5.dist-info' 2026-04-23T20:45:02,269 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-23T20:45:02,274 Source in /tmp/pip-wheel-hs2v4rrj/acellera-htmd_59bc1f27dfb442dcbb59aebca3c97f00 has version 2.6.5, which satisfies requirement acellera-htmd==2.6.5 from https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz 2026-04-23T20:45:02,275 Removed acellera-htmd==2.6.5 from https://files.pythonhosted.org/packages/0f/6b/33aaeb43df7e5b74f5070ddd7ebdd18076821ccdadc3f529c50436d9d008/acellera_htmd-2.6.5.tar.gz from build tracker '/tmp/pip-build-tracker-9gog3pwk' 2026-04-23T20:45:02,281 Created temporary directory: /tmp/pip-unpack-twynrtjw 2026-04-23T20:45:02,281 Building wheels for collected packages: acellera-htmd 2026-04-23T20:45:02,286 Created temporary directory: /tmp/pip-wheel-rwu3ytx2 2026-04-23T20:45:02,286 Destination directory: /tmp/pip-wheel-rwu3ytx2 2026-04-23T20:45:02,289 Building wheel for acellera-htmd (pyproject.toml): started 2026-04-23T20:45:02,290 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-04-23T20:45:03,027 running bdist_wheel 2026-04-23T20:45:03,052 running build 2026-04-23T20:45:03,052 running build_py 2026-04-23T20:45:03,054 creating build/lib/htmd 2026-04-23T20:45:03,056 copying htmd/session.py -> build/lib/htmd 2026-04-23T20:45:03,058 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-04-23T20:45:03,061 copying htmd/pathplanning.py -> build/lib/htmd 2026-04-23T20:45:03,063 copying htmd/license.py -> build/lib/htmd 2026-04-23T20:45:03,066 copying htmd/util.py -> build/lib/htmd 2026-04-23T20:45:03,068 copying htmd/simlist.py -> build/lib/htmd 2026-04-23T20:45:03,070 copying htmd/model.py -> build/lib/htmd 2026-04-23T20:45:03,074 copying htmd/units.py -> build/lib/htmd 2026-04-23T20:45:03,076 copying htmd/ui.py -> build/lib/htmd 2026-04-23T20:45:03,077 copying htmd/latest.py -> build/lib/htmd 2026-04-23T20:45:03,079 copying htmd/versionwarnings.py -> build/lib/htmd 2026-04-23T20:45:03,081 copying htmd/home.py -> build/lib/htmd 2026-04-23T20:45:03,083 copying htmd/decorators.py -> build/lib/htmd 2026-04-23T20:45:03,085 copying htmd/config.py -> build/lib/htmd 2026-04-23T20:45:03,087 copying htmd/parallelprogress.py -> build/lib/htmd 2026-04-23T20:45:03,088 copying htmd/dock.py -> build/lib/htmd 2026-04-23T20:45:03,091 copying htmd/metricdata.py -> build/lib/htmd 2026-04-23T20:45:03,094 copying htmd/__init__.py -> build/lib/htmd 2026-04-23T20:45:03,096 copying htmd/kinetics.py -> build/lib/htmd 2026-04-23T20:45:03,098 copying htmd/mutualinformation.py -> build/lib/htmd 2026-04-23T20:45:03,101 creating build/lib/htmd/builder 2026-04-23T20:45:03,102 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-04-23T20:45:03,105 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-04-23T20:45:03,107 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-04-23T20:45:03,110 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-04-23T20:45:03,112 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-04-23T20:45:03,116 copying htmd/builder/noncanonical.py -> build/lib/htmd/builder 2026-04-23T20:45:03,118 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-04-23T20:45:03,121 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-04-23T20:45:03,123 creating build/lib/htmd/membranebuilder 2026-04-23T20:45:03,124 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-04-23T20:45:03,127 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-04-23T20:45:03,129 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-04-23T20:45:03,131 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-04-23T20:45:03,133 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-04-23T20:45:03,136 creating build/lib/htmd/projections 2026-04-23T20:45:03,137 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-04-23T20:45:03,140 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-04-23T20:45:03,142 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-04-23T20:45:03,143 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-04-23T20:45:03,146 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-04-23T20:45:03,148 creating build/lib/htmd/clustering 2026-04-23T20:45:03,149 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-04-23T20:45:03,151 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-04-23T20:45:03,154 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-04-23T20:45:03,156 creating build/lib/htmd/adaptive 2026-04-23T20:45:03,157 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,159 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,162 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,164 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,167 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,169 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,172 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-04-23T20:45:03,206 creating build/lib/htmd/share 2026-04-23T20:45:03,207 copying htmd/share/license-checker -> build/lib/htmd/share 2026-04-23T20:45:03,215 creating build/lib/htmd/share/builder 2026-04-23T20:45:03,216 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-04-23T20:45:03,219 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-04-23T20:45:03,221 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-04-23T20:45:03,228 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,229 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,232 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,234 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,236 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,239 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,241 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,243 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,245 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,247 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,250 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,252 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,254 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,257 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,260 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,262 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,264 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,266 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,268 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,271 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,273 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,275 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,277 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,280 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,282 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,284 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,286 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,288 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,291 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,293 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,295 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,297 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,300 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,302 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,304 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,306 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,308 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,311 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,313 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,315 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,317 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,320 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,322 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,324 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,326 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,328 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,331 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,333 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,335 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,337 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,340 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,344 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,347 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,349 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,351 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,354 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,356 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,358 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,360 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,362 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,365 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,367 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,369 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,371 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,374 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,376 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,378 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,380 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,382 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,385 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,387 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,389 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,391 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,394 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,396 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,398 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,401 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,403 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,405 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,407 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,410 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,412 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,414 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,417 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,419 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,422 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,424 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,426 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,428 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,430 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,433 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,435 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,437 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,439 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,442 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,444 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,447 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,449 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,451 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,454 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,456 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,458 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,460 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,462 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,465 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,467 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,469 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,472 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,474 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,477 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,479 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,481 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,484 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,486 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,489 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,492 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,495 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,498 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,500 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,503 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,505 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,508 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,510 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,513 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,515 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,518 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,520 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,523 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,525 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,528 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,530 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,533 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,535 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:03,537 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,539 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,542 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,544 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,548 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,550 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,553 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,555 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,558 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,561 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,563 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,566 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,568 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,571 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,573 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,576 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,579 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,582 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,585 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,587 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,589 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,592 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,594 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:03,597 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,598 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,600 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,603 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,605 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,608 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,610 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,613 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,615 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,618 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,620 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,622 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,625 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,627 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,630 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,632 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,634 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,637 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,640 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,642 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,645 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,647 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,651 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,654 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,656 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,659 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,661 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,664 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,666 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,669 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,672 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,674 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,677 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,680 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,683 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,686 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,689 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,693 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,696 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,698 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,702 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,705 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,707 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,710 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,712 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,715 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,717 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,720 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,722 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:03,724 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,726 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,729 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,732 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,737 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,740 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,742 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:03,745 creating build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,746 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,749 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,752 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,754 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,757 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-04-23T20:45:03,760 creating build/lib/htmd/share/builder/charmmfiles 2026-04-23T20:45:03,762 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-04-23T20:45:03,764 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-04-23T20:45:03,767 creating build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,768 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,773 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,777 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,780 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,786 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,802 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,806 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,811 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,814 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,817 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:03,823 creating build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,824 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,834 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,876 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,888 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,892 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,896 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,899 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,903 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,907 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,911 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:03,920 creating build/lib/htmd/share/builder/charmmfiles/str 2026-04-23T20:45:03,921 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-04-23T20:45:03,924 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,926 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,965 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,970 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,973 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,975 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,980 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,984 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,988 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,991 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,994 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:03,997 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:04,000 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:04,006 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,007 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,035 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,041 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,047 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,051 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,071 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:04,077 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,079 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,084 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,123 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,128 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,145 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,171 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,197 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,205 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,222 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,231 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,235 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,238 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,240 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,254 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,258 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,262 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,266 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,274 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,279 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:04,284 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-23T20:45:04,285 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-04-23T20:45:04,287 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,288 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,291 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,294 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,296 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,299 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:04,301 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,302 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,321 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,325 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,349 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,352 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:04,357 creating build/lib/htmd/share/membranebuilder/lipids 2026-04-23T20:45:04,358 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-04-23T20:45:04,361 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-23T20:45:04,361 copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-04-23T20:45:04,364 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-23T20:45:04,365 copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-04-23T20:45:04,368 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-23T20:45:04,369 copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-04-23T20:45:04,371 creating build/lib/htmd/share/solvate 2026-04-23T20:45:04,372 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-04-23T20:45:04,426 installing to build/bdist.linux-armv7l/wheel 2026-04-23T20:45:04,427 running install 2026-04-23T20:45:04,461 running install_lib 2026-04-23T20:45:04,471 creating build/bdist.linux-armv7l/wheel 2026-04-23T20:45:04,474 creating build/bdist.linux-armv7l/wheel/htmd 2026-04-23T20:45:04,476 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,478 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,481 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,484 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,487 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,490 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-04-23T20:45:04,492 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,495 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,498 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,500 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,504 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,508 copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,511 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,514 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-04-23T20:45:04,517 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-04-23T20:45:04,519 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-23T20:45:04,522 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-23T20:45:04,524 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-23T20:45:04,526 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-23T20:45:04,527 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-04-23T20:45:04,530 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,533 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,536 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,538 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-04-23T20:45:04,540 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-23T20:45:04,542 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-23T20:45:04,544 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-23T20:45:04,546 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-23T20:45:04,548 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-04-23T20:45:04,550 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:04,553 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-04-23T20:45:04,554 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-04-23T20:45:04,556 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-04-23T20:45:04,559 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,561 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,562 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,564 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,566 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,568 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,570 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,572 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,574 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,576 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,578 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,579 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,581 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,583 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,585 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,587 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,589 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,591 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,592 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,594 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,596 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,598 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,600 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,602 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,603 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,605 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,607 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,609 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,611 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,613 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,615 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,616 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,618 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,620 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,622 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,624 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,625 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,627 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,629 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,631 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,633 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,635 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,637 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,639 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,640 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,642 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,644 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,646 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,648 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,650 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,652 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,657 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,659 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,660 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,662 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,664 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,666 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,668 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,670 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,672 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,673 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,675 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,677 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,679 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,681 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,683 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,685 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,687 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,689 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,691 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,694 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,696 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,697 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,699 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,701 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,703 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,705 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,707 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,709 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,710 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,712 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,714 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,717 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,719 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,721 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,722 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,724 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,726 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,728 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,730 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,732 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,734 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,736 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,738 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,739 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,741 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,743 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,745 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,747 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,748 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,750 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,752 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,754 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,755 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,757 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,759 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,761 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,763 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,765 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,767 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,770 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,772 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,774 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,777 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,779 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,781 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,784 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,786 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,788 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,790 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,792 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,794 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,796 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,798 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,800 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,801 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,803 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,805 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,807 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,809 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,811 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,812 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,814 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-04-23T20:45:04,817 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,818 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,820 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,822 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,825 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,827 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,829 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,831 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,833 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,836 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,837 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,839 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,841 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,843 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,845 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,847 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,849 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,851 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,853 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,854 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,856 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,858 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,860 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-04-23T20:45:04,863 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,864 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,866 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,868 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,870 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,872 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,874 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,876 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,878 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,880 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,882 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,884 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,886 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,887 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,889 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,891 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,893 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,894 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,896 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,898 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,900 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,901 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,904 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,906 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,908 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,910 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,912 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,914 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,916 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,918 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,920 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,922 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,923 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,925 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,927 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,929 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,931 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,933 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,935 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,937 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,939 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,941 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,943 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,944 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,946 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,948 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,950 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,952 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,954 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-04-23T20:45:04,957 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,958 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,960 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,962 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,966 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,968 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,970 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-04-23T20:45:04,972 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-04-23T20:45:04,973 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-23T20:45:04,975 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-23T20:45:04,977 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-23T20:45:04,979 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-23T20:45:04,981 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-04-23T20:45:04,983 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-23T20:45:04,984 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-23T20:45:04,987 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-04-23T20:45:04,988 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-23T20:45:04,990 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-04-23T20:45:04,993 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-04-23T20:45:04,994 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:04,998 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,001 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,004 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,008 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,024 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,027 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,032 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,034 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,037 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-04-23T20:45:05,043 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,044 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,052 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,102 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,113 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,116 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,120 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,122 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,125 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,128 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,131 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-04-23T20:45:05,138 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-04-23T20:45:05,140 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,141 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,170 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,174 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,177 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,179 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,183 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,187 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,190 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,193 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,196 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,198 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,201 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-04-23T20:45:05,207 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,209 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,229 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,236 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,247 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,251 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,279 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-04-23T20:45:05,287 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-04-23T20:45:05,292 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,293 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,299 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,384 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,389 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,401 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,425 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,451 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,458 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,484 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,491 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,494 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,497 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,498 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,512 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,516 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,520 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,523 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,530 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,534 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-04-23T20:45:05,540 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-04-23T20:45:05,541 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-04-23T20:45:05,544 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,545 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,547 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,549 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,551 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,553 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-04-23T20:45:05,556 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,557 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,583 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,586 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,608 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,610 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-04-23T20:45:05,615 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-04-23T20:45:05,621 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-04-23T20:45:05,622 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-04-23T20:45:05,624 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-04-23T20:45:05,626 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-04-23T20:45:05,629 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-04-23T20:45:05,630 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-04-23T20:45:05,633 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-04-23T20:45:05,635 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-04-23T20:45:05,638 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-04-23T20:45:05,640 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-04-23T20:45:05,642 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-04-23T20:45:05,673 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-04-23T20:45:05,681 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-04-23T20:45:05,683 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-23T20:45:05,685 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-23T20:45:05,688 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-04-23T20:45:05,690 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,692 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,694 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,696 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,698 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,701 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,703 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,705 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,709 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,711 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,714 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-04-23T20:45:05,715 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,717 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,720 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,723 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,726 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,728 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,731 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-04-23T20:45:05,733 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-04-23T20:45:05,736 running install_egg_info 2026-04-23T20:45:05,748 running egg_info 2026-04-23T20:45:05,756 writing acellera_htmd.egg-info/PKG-INFO 2026-04-23T20:45:05,760 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-04-23T20:45:05,762 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-04-23T20:45:05,766 writing requirements to acellera_htmd.egg-info/requires.txt 2026-04-23T20:45:05,767 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-04-23T20:45:05,834 /tmp/pip-build-env-zb6n7p02/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-23T20:45:05,834 return get_active_overrides().subprocess_timeout 2026-04-23T20:45:05,842 listing git files failed - pretending there aren't any 2026-04-23T20:45:05,847 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:05,867 reading manifest template 'MANIFEST.in' 2026-04-23T20:45:05,885 no previously-included directories found matching 'htmd/data' 2026-04-23T20:45:05,887 no previously-included directories found matching '.github' 2026-04-23T20:45:05,889 no previously-included directories found matching 'doc' 2026-04-23T20:45:05,890 no previously-included directories found matching 'package' 2026-04-23T20:45:05,892 no previously-included directories found matching 'tests' 2026-04-23T20:45:05,893 no previously-included directories found matching 'tutorials' 2026-04-23T20:45:05,895 warning: no previously-included files found matching 'Makefile' 2026-04-23T20:45:05,896 adding license file 'LICENSE' 2026-04-23T20:45:05,918 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-04-23T20:45:05,920 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.6.5-py3.11.egg-info 2026-04-23T20:45:05,933 running install_scripts 2026-04-23T20:45:05,946 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.6.5.dist-info/WHEEL 2026-04-23T20:45:05,949 creating '/tmp/pip-wheel-rwu3ytx2/.tmp-tqtf5qgr/acellera_htmd-2.6.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-23T20:45:05,953 adding 'acellera_htmd-2.6.5.dist-info/licenses/LICENSE' 2026-04-23T20:45:05,955 adding 'htmd/__init__.py' 2026-04-23T20:45:05,957 adding 'htmd/config.py' 2026-04-23T20:45:05,959 adding 'htmd/decorators.py' 2026-04-23T20:45:05,961 adding 'htmd/dock.py' 2026-04-23T20:45:05,962 adding 'htmd/home.py' 2026-04-23T20:45:05,965 adding 'htmd/kinetics.py' 2026-04-23T20:45:05,967 adding 'htmd/latest.py' 2026-04-23T20:45:05,969 adding 'htmd/license.py' 2026-04-23T20:45:05,976 adding 'htmd/metricdata.py' 2026-04-23T20:45:05,978 adding 'htmd/metricdatagenerator.py' 2026-04-23T20:45:05,987 adding 'htmd/model.py' 2026-04-23T20:45:05,990 adding 'htmd/mutualinformation.py' 2026-04-23T20:45:05,992 adding 'htmd/parallelprogress.py' 2026-04-23T20:45:05,994 adding 'htmd/pathplanning.py' 2026-04-23T20:45:05,996 adding 'htmd/session.py' 2026-04-23T20:45:05,999 adding 'htmd/simlist.py' 2026-04-23T20:45:06,001 adding 'htmd/ui.py' 2026-04-23T20:45:06,003 adding 'htmd/units.py' 2026-04-23T20:45:06,005 adding 'htmd/util.py' 2026-04-23T20:45:06,006 adding 'htmd/versionwarnings.py' 2026-04-23T20:45:06,008 adding 'htmd/adaptive/__init__.py' 2026-04-23T20:45:06,011 adding 'htmd/adaptive/adaptive.py' 2026-04-23T20:45:06,014 adding 'htmd/adaptive/adaptivebandit.py' 2026-04-23T20:45:06,018 adding 'htmd/adaptive/adaptivegoal.py' 2026-04-23T20:45:06,020 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-04-23T20:45:06,023 adding 'htmd/adaptive/adaptiverun.py' 2026-04-23T20:45:06,025 adding 'htmd/adaptive/util.py' 2026-04-23T20:45:06,027 adding 'htmd/builder/__init__.py' 2026-04-23T20:45:06,035 adding 'htmd/builder/amber.py' 2026-04-23T20:45:06,038 adding 'htmd/builder/builder.py' 2026-04-23T20:45:06,043 adding 'htmd/builder/charmm.py' 2026-04-23T20:45:06,046 adding 'htmd/builder/ionize.py' 2026-04-23T20:45:06,048 adding 'htmd/builder/loopmodeler.py' 2026-04-23T20:45:06,051 adding 'htmd/builder/noncanonical.py' 2026-04-23T20:45:06,053 adding 'htmd/builder/solvate.py' 2026-04-23T20:45:06,055 adding 'htmd/clustering/__init__.py' 2026-04-23T20:45:06,057 adding 'htmd/clustering/kcenters.py' 2026-04-23T20:45:06,059 adding 'htmd/clustering/regular.py' 2026-04-23T20:45:06,061 adding 'htmd/membranebuilder/__init__.py' 2026-04-23T20:45:06,063 adding 'htmd/membranebuilder/build_membrane.py' 2026-04-23T20:45:06,065 adding 'htmd/membranebuilder/globalminimization.py' 2026-04-23T20:45:06,067 adding 'htmd/membranebuilder/ljfluid.py' 2026-04-23T20:45:06,069 adding 'htmd/membranebuilder/ringpenetration.py' 2026-04-23T20:45:06,071 adding 'htmd/projections/__init__.py' 2026-04-23T20:45:06,073 adding 'htmd/projections/gwpca.py' 2026-04-23T20:45:06,074 adding 'htmd/projections/kmeanstri.py' 2026-04-23T20:45:06,077 adding 'htmd/projections/metric.py' 2026-04-23T20:45:06,079 adding 'htmd/projections/tica.py' 2026-04-23T20:45:06,136 adding 'htmd/share/license-checker' 2026-04-23T20:45:06,169 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-04-23T20:45:06,172 adding 'htmd/share/builder/triala_capped.cif' 2026-04-23T20:45:06,174 adding 'htmd/share/builder/triala_capped.mmtf' 2026-04-23T20:45:06,177 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-04-23T20:45:06,179 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-04-23T20:45:06,180 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-04-23T20:45:06,182 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-04-23T20:45:06,184 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-04-23T20:45:06,186 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-04-23T20:45:06,187 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-04-23T20:45:06,189 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-04-23T20:45:06,191 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-04-23T20:45:06,193 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-04-23T20:45:06,194 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-04-23T20:45:06,196 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-04-23T20:45:06,198 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-04-23T20:45:06,200 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-04-23T20:45:06,202 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-04-23T20:45:06,204 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-04-23T20:45:06,205 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-04-23T20:45:06,208 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-04-23T20:45:06,209 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-04-23T20:45:06,212 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-04-23T20:45:06,213 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-04-23T20:45:06,222 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-04-23T20:45:06,227 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-04-23T20:45:06,228 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-04-23T20:45:06,230 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-04-23T20:45:06,231 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-04-23T20:45:06,232 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-04-23T20:45:06,234 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-04-23T20:45:06,235 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-04-23T20:45:06,237 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-04-23T20:45:06,239 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-04-23T20:45:06,240 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-04-23T20:45:06,242 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-04-23T20:45:06,243 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-04-23T20:45:06,245 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-04-23T20:45:06,246 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-04-23T20:45:06,248 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-04-23T20:45:06,249 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-04-23T20:45:06,251 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-04-23T20:45:06,252 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-04-23T20:45:06,254 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-04-23T20:45:06,255 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-04-23T20:45:06,257 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-04-23T20:45:06,258 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-04-23T20:45:06,260 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-04-23T20:45:06,261 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-04-23T20:45:06,263 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-04-23T20:45:06,265 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-04-23T20:45:06,266 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-04-23T20:45:06,268 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-04-23T20:45:06,269 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-04-23T20:45:06,271 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-04-23T20:45:06,272 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-04-23T20:45:06,274 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-04-23T20:45:06,275 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-04-23T20:45:06,277 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-04-23T20:45:06,278 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-04-23T20:45:06,280 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-04-23T20:45:06,281 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-04-23T20:45:06,283 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-04-23T20:45:06,284 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-04-23T20:45:06,286 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-04-23T20:45:06,288 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-04-23T20:45:06,289 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-04-23T20:45:06,291 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-04-23T20:45:06,292 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-04-23T20:45:06,294 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-04-23T20:45:06,295 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-04-23T20:45:06,297 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-04-23T20:45:06,298 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-04-23T20:45:06,300 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-04-23T20:45:06,302 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-04-23T20:45:06,303 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-04-23T20:45:06,304 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-04-23T20:45:06,306 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-04-23T20:45:06,308 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-04-23T20:45:06,309 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-04-23T20:45:06,311 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-04-23T20:45:06,312 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-04-23T20:45:06,314 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-04-23T20:45:06,315 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-04-23T20:45:06,317 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-04-23T20:45:06,318 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-04-23T20:45:06,320 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-04-23T20:45:06,321 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-04-23T20:45:06,323 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-04-23T20:45:06,324 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-04-23T20:45:06,326 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-04-23T20:45:06,327 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-04-23T20:45:06,329 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-04-23T20:45:06,330 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-04-23T20:45:06,332 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-04-23T20:45:06,333 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-04-23T20:45:06,335 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-04-23T20:45:06,336 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-04-23T20:45:06,338 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-04-23T20:45:06,339 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-04-23T20:45:06,341 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-04-23T20:45:06,342 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-04-23T20:45:06,344 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-04-23T20:45:06,346 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-04-23T20:45:06,347 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-04-23T20:45:06,349 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-04-23T20:45:06,351 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-04-23T20:45:06,352 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-04-23T20:45:06,354 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-04-23T20:45:06,355 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-04-23T20:45:06,356 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-04-23T20:45:06,358 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-04-23T20:45:06,360 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-04-23T20:45:06,361 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-04-23T20:45:06,363 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-04-23T20:45:06,364 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-04-23T20:45:06,365 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-04-23T20:45:06,367 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-04-23T20:45:06,368 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-04-23T20:45:06,370 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-04-23T20:45:06,371 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-04-23T20:45:06,373 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-04-23T20:45:06,374 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-04-23T20:45:06,376 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-04-23T20:45:06,377 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-04-23T20:45:06,379 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-04-23T20:45:06,380 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-04-23T20:45:06,382 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-04-23T20:45:06,383 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-04-23T20:45:06,385 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-04-23T20:45:06,386 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-04-23T20:45:06,388 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-04-23T20:45:06,389 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-04-23T20:45:06,391 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-04-23T20:45:06,392 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-04-23T20:45:06,394 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-04-23T20:45:06,395 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-04-23T20:45:06,396 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-04-23T20:45:06,398 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-04-23T20:45:06,399 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-04-23T20:45:06,401 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-04-23T20:45:06,402 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-04-23T20:45:06,403 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-04-23T20:45:06,404 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-04-23T20:45:06,406 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-04-23T20:45:06,407 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-04-23T20:45:06,408 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-04-23T20:45:06,410 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-04-23T20:45:06,411 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-04-23T20:45:06,412 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-04-23T20:45:06,413 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-04-23T20:45:06,415 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-04-23T20:45:06,416 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-04-23T20:45:06,417 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-04-23T20:45:06,418 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-04-23T20:45:06,419 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-04-23T20:45:06,440 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-04-23T20:45:06,443 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-04-23T20:45:06,445 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-04-23T20:45:06,449 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-04-23T20:45:06,451 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-04-23T20:45:06,453 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-04-23T20:45:06,454 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-04-23T20:45:06,456 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-04-23T20:45:06,458 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-04-23T20:45:06,459 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-04-23T20:45:06,460 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-04-23T20:45:06,461 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-04-23T20:45:06,463 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-04-23T20:45:06,464 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-04-23T20:45:06,465 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-04-23T20:45:06,466 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-04-23T20:45:06,468 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-04-23T20:45:06,469 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-04-23T20:45:06,470 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-04-23T20:45:06,471 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-04-23T20:45:06,472 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-04-23T20:45:06,474 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-04-23T20:45:06,475 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-04-23T20:45:06,476 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-04-23T20:45:06,477 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-04-23T20:45:06,479 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-04-23T20:45:06,480 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-04-23T20:45:06,481 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-04-23T20:45:06,483 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-04-23T20:45:06,484 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-04-23T20:45:06,485 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-04-23T20:45:06,486 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-04-23T20:45:06,487 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-04-23T20:45:06,488 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-04-23T20:45:06,490 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-04-23T20:45:06,491 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-04-23T20:45:06,492 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-04-23T20:45:06,493 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-04-23T20:45:06,495 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-04-23T20:45:06,496 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-04-23T20:45:06,497 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-04-23T20:45:06,498 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-04-23T20:45:06,500 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-04-23T20:45:06,501 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-04-23T20:45:06,503 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-04-23T20:45:06,504 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-04-23T20:45:06,505 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-04-23T20:45:06,506 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-04-23T20:45:06,510 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-04-23T20:45:06,511 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-04-23T20:45:06,512 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-04-23T20:45:06,514 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-04-23T20:45:06,515 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-04-23T20:45:06,516 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-04-23T20:45:06,525 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-04-23T20:45:06,527 adding 'htmd/share/builder/caps/ACE.cif' 2026-04-23T20:45:06,528 adding 'htmd/share/builder/caps/ACE.pdb' 2026-04-23T20:45:06,529 adding 'htmd/share/builder/caps/NHE.pdb' 2026-04-23T20:45:06,530 adding 'htmd/share/builder/caps/NME.cif' 2026-04-23T20:45:06,532 adding 'htmd/share/builder/caps/NME.pdb' 2026-04-23T20:45:06,533 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-04-23T20:45:06,534 adding 'htmd/share/builder/charmmfiles/README.md' 2026-04-23T20:45:06,548 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-04-23T20:45:06,562 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-04-23T20:45:06,565 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-04-23T20:45:06,581 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-04-23T20:45:06,668 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-04-23T20:45:06,677 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-04-23T20:45:06,680 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-04-23T20:45:06,688 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-04-23T20:45:06,703 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-04-23T20:45:06,706 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-04-23T20:45:06,709 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-04-23T20:45:06,785 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-04-23T20:45:06,795 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-04-23T20:45:06,925 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-04-23T20:45:06,952 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-04-23T20:45:06,965 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-04-23T20:45:06,968 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-04-23T20:45:07,006 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-04-23T20:45:07,038 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-04-23T20:45:07,146 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-04-23T20:45:07,151 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-04-23T20:45:07,165 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-04-23T20:45:07,172 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-04-23T20:45:07,264 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-04-23T20:45:07,289 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-04-23T20:45:07,309 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-04-23T20:45:07,400 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-04-23T20:45:07,412 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-04-23T20:45:07,675 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-04-23T20:45:07,792 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-04-23T20:45:07,854 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-04-23T20:45:07,870 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-04-23T20:45:07,878 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-04-23T20:45:07,895 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-04-23T20:45:07,905 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-04-23T20:45:07,913 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-04-23T20:45:07,916 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-04-23T20:45:07,918 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-04-23T20:45:07,919 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-04-23T20:45:07,920 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-04-23T20:45:07,922 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-04-23T20:45:07,935 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-04-23T20:45:07,962 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-04-23T20:45:07,982 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-04-23T20:45:07,988 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-04-23T20:45:08,117 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-04-23T20:45:08,253 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-04-23T20:45:08,263 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-04-23T20:45:08,265 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-04-23T20:45:08,277 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-04-23T20:45:08,302 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-04-23T20:45:08,305 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-04-23T20:45:08,308 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-04-23T20:45:08,311 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-04-23T20:45:08,322 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-04-23T20:45:08,520 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-04-23T20:45:08,542 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-04-23T20:45:08,546 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-04-23T20:45:08,555 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-04-23T20:45:08,565 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-04-23T20:45:08,575 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-04-23T20:45:08,581 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-04-23T20:45:08,607 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-04-23T20:45:08,911 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-04-23T20:45:08,990 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-04-23T20:45:09,039 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-04-23T20:45:09,046 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-04-23T20:45:09,056 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-04-23T20:45:09,057 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-04-23T20:45:09,059 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-04-23T20:45:09,061 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb' 2026-04-23T20:45:09,064 adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb' 2026-04-23T20:45:09,066 adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb' 2026-04-23T20:45:09,355 adding 'htmd/share/solvate/wat.pdb' 2026-04-23T20:45:09,370 adding 'acellera_htmd-2.6.5.dist-info/METADATA' 2026-04-23T20:45:09,371 adding 'acellera_htmd-2.6.5.dist-info/WHEEL' 2026-04-23T20:45:09,372 adding 'acellera_htmd-2.6.5.dist-info/entry_points.txt' 2026-04-23T20:45:09,373 adding 'acellera_htmd-2.6.5.dist-info/top_level.txt' 2026-04-23T20:45:09,378 adding 'acellera_htmd-2.6.5.dist-info/RECORD' 2026-04-23T20:45:09,427 removing build/bdist.linux-armv7l/wheel 2026-04-23T20:45:09,625 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-04-23T20:45:09,721 Created wheel for acellera-htmd: filename=acellera_htmd-2.6.5-py3-none-any.whl size=4267681 sha256=6a4478ef428c11d897f8bed0691db4c073ee7b0cc080975f0ce3794bb17152be 2026-04-23T20:45:09,722 Stored in directory: /tmp/pip-ephem-wheel-cache-66llqz7w/wheels/cf/e9/e5/d144d32bd8d35580fc45b9c20ee9e001d8a68f035a95a8a1bd 2026-04-23T20:45:09,745 Successfully built acellera-htmd 2026-04-23T20:45:09,863 Removed build tracker: '/tmp/pip-build-tracker-9gog3pwk'