2026-04-26T12:02:03,050 Created temporary directory: /tmp/pip-ephem-wheel-cache-_vwn7wnn 2026-04-26T12:02:03,052 Created temporary directory: /tmp/pip-build-tracker-yyckt8xd 2026-04-26T12:02:03,053 Initialized build tracking at /tmp/pip-build-tracker-yyckt8xd 2026-04-26T12:02:03,053 Created build tracker: /tmp/pip-build-tracker-yyckt8xd 2026-04-26T12:02:03,054 Entered build tracker: /tmp/pip-build-tracker-yyckt8xd 2026-04-26T12:02:03,054 Created temporary directory: /tmp/pip-wheel-xc_ehvxo 2026-04-26T12:02:03,058 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-26T12:02:03,060 Created temporary directory: /tmp/pip-ephem-wheel-cache-ws96mwgh 2026-04-26T12:02:03,082 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-26T12:02:03,086 2 location(s) to search for versions of omicverse-skills: 2026-04-26T12:02:03,086 * https://pypi.org/simple/omicverse-skills/ 2026-04-26T12:02:03,086 * https://www.piwheels.org/simple/omicverse-skills/ 2026-04-26T12:02:03,087 Fetching project page and analyzing links: https://pypi.org/simple/omicverse-skills/ 2026-04-26T12:02:03,087 Getting page https://pypi.org/simple/omicverse-skills/ 2026-04-26T12:02:03,089 Found index url https://pypi.org/simple 2026-04-26T12:02:03,313 Fetched page https://pypi.org/simple/omicverse-skills/ as application/vnd.pypi.simple.v1+json 2026-04-26T12:02:03,316 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/9c/ab/10f05fbb75a503681ea79a69db4fc9b4a51e9efe8cc3d8c7024860e788e4/omicverse_skills-0.1.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-26T12:02:03,317 Found link https://files.pythonhosted.org/packages/9f/cd/33af9075cdeb5cda8422702a12ee500a3e67dcdf8e19753ae9875c05d3f5/omicverse_skills-0.1.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.1.0 2026-04-26T12:02:03,317 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/b5/e0/5bf909c4007540eedc84e255a375fcdd700902a6020e9595b786f83b9729/omicverse_skills-0.2.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-26T12:02:03,318 Found link https://files.pythonhosted.org/packages/76/a7/d168b8fbf3bb2d3ce9cbd810f1fd411f5aa20bf7378ac222eb086b9fcbad/omicverse_skills-0.2.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.2.0 2026-04-26T12:02:03,319 Skipping link: No binaries permitted for omicverse-skills: https://files.pythonhosted.org/packages/5a/3e/16b2f9b93a5b791bb0dc47ab28f9b30cb0557b49b2170d082520e47245a5/omicverse_skills-0.3.0-py3-none-any.whl (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-26T12:02:03,320 Found link https://files.pythonhosted.org/packages/9e/64/f2ab551c6dd9139e3f0f64fd46de478b6792eb3d599b39b409c6edc1a355/omicverse_skills-0.3.0.tar.gz (from https://pypi.org/simple/omicverse-skills/) (requires-python:>=3.8), version: 0.3.0 2026-04-26T12:02:03,321 Fetching project page and analyzing links: https://www.piwheels.org/simple/omicverse-skills/ 2026-04-26T12:02:03,322 Getting page https://www.piwheels.org/simple/omicverse-skills/ 2026-04-26T12:02:03,323 Found index url https://www.piwheels.org/simple 2026-04-26T12:02:03,497 Fetched page https://www.piwheels.org/simple/omicverse-skills/ as text/html 2026-04-26T12:02:03,499 Skipping link: No binaries permitted for omicverse-skills: https://archive1.piwheels.org/simple/omicverse-skills/omicverse_skills-0.2.0-py3-none-any.whl#sha256=87d48d87edcc650a3962c213a91f329ecdcef1dd5c5023c0bd63d801cc66cc74 (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-26T12:02:03,500 Skipping link: No binaries permitted for omicverse-skills: https://archive1.piwheels.org/simple/omicverse-skills/omicverse_skills-0.1.0-py3-none-any.whl#sha256=e437d750b17759f8e44d5df94ae4e8fbe3f4b9740155e3a6af36e9fba9bf12ae (from https://www.piwheels.org/simple/omicverse-skills/) (requires-python:>=3.8) 2026-04-26T12:02:03,501 Skipping link: not a file: https://www.piwheels.org/simple/omicverse-skills/ 2026-04-26T12:02:03,502 Skipping link: not a file: https://pypi.org/simple/omicverse-skills/ 2026-04-26T12:02:03,524 Given no hashes to check 1 links for project 'omicverse-skills': discarding no candidates 2026-04-26T12:02:03,544 Collecting omicverse-skills==0.3.0 2026-04-26T12:02:03,547 Created temporary directory: /tmp/pip-unpack-9msifen9 2026-04-26T12:02:03,699 Downloading omicverse_skills-0.3.0.tar.gz (367 kB) 2026-04-26T12:02:04,392 Added omicverse-skills==0.3.0 from https://files.pythonhosted.org/packages/9e/64/f2ab551c6dd9139e3f0f64fd46de478b6792eb3d599b39b409c6edc1a355/omicverse_skills-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-yyckt8xd' 2026-04-26T12:02:04,397 Created temporary directory: /tmp/pip-build-env-j5tvd_6u 2026-04-26T12:02:04,402 Installing build dependencies: started 2026-04-26T12:02:04,403 Running command pip subprocess to install build dependencies 2026-04-26T12:02:05,571 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-26T12:02:06,019 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-26T12:02:06,042 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-26T12:02:07,788 Collecting setuptools>=67 2026-04-26T12:02:07,889 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-26T12:02:08,164 Collecting wheel 2026-04-26T12:02:08,179 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-04-26T12:02:08,361 Collecting packaging>=24.0 2026-04-26T12:02:08,378 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-04-26T12:02:11,377 Installing collected packages: setuptools, packaging, wheel 2026-04-26T12:02:14,911 Creating /tmp/pip-build-env-j5tvd_6u/overlay/local/bin 2026-04-26T12:02:14,913 changing mode of /tmp/pip-build-env-j5tvd_6u/overlay/local/bin/wheel to 755 2026-04-26T12:02:14,935 Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0 2026-04-26T12:02:15,212 Installing build dependencies: finished with status 'done' 2026-04-26T12:02:15,218 Getting requirements to build wheel: started 2026-04-26T12:02:15,220 Running command Getting requirements to build wheel 2026-04-26T12:02:15,992 running egg_info 2026-04-26T12:02:15,998 writing src/omicverse_skills.egg-info/PKG-INFO 2026-04-26T12:02:16,001 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-04-26T12:02:16,003 writing entry points to src/omicverse_skills.egg-info/entry_points.txt 2026-04-26T12:02:16,005 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-04-26T12:02:16,266 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:16,280 reading manifest template 'MANIFEST.in' 2026-04-26T12:02:16,551 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-26T12:02:16,553 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-26T12:02:16,555 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-26T12:02:16,556 adding license file 'LICENSE' 2026-04-26T12:02:16,572 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:16,670 Getting requirements to build wheel: finished with status 'done' 2026-04-26T12:02:16,674 Created temporary directory: /tmp/pip-modern-metadata-p2ung0bh 2026-04-26T12:02:16,676 Preparing metadata (pyproject.toml): started 2026-04-26T12:02:16,677 Running command Preparing metadata (pyproject.toml) 2026-04-26T12:02:17,351 running dist_info 2026-04-26T12:02:17,361 creating /tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info 2026-04-26T12:02:17,362 writing /tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/PKG-INFO 2026-04-26T12:02:17,366 writing dependency_links to /tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/dependency_links.txt 2026-04-26T12:02:17,368 writing entry points to /tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/entry_points.txt 2026-04-26T12:02:17,370 writing top-level names to /tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/top_level.txt 2026-04-26T12:02:17,371 writing manifest file '/tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:17,570 reading manifest file '/tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:17,572 reading manifest template 'MANIFEST.in' 2026-04-26T12:02:17,814 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-26T12:02:17,816 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-26T12:02:17,818 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-26T12:02:17,818 adding license file 'LICENSE' 2026-04-26T12:02:17,832 writing manifest file '/tmp/pip-modern-metadata-p2ung0bh/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:17,834 creating '/tmp/pip-modern-metadata-p2ung0bh/omicverse_skills-0.3.0.dist-info' 2026-04-26T12:02:17,956 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-26T12:02:17,961 Source in /tmp/pip-wheel-xc_ehvxo/omicverse-skills_e059d2c4a87e4be1bef29786a5f832fe has version 0.3.0, which satisfies requirement omicverse-skills==0.3.0 from https://files.pythonhosted.org/packages/9e/64/f2ab551c6dd9139e3f0f64fd46de478b6792eb3d599b39b409c6edc1a355/omicverse_skills-0.3.0.tar.gz 2026-04-26T12:02:17,962 Removed omicverse-skills==0.3.0 from https://files.pythonhosted.org/packages/9e/64/f2ab551c6dd9139e3f0f64fd46de478b6792eb3d599b39b409c6edc1a355/omicverse_skills-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-yyckt8xd' 2026-04-26T12:02:17,968 Created temporary directory: /tmp/pip-unpack-bm_en_9h 2026-04-26T12:02:17,969 Building wheels for collected packages: omicverse-skills 2026-04-26T12:02:17,974 Created temporary directory: /tmp/pip-wheel-xkrw4zjn 2026-04-26T12:02:17,975 Destination directory: /tmp/pip-wheel-xkrw4zjn 2026-04-26T12:02:17,977 Building wheel for omicverse-skills (pyproject.toml): started 2026-04-26T12:02:17,978 Running command Building wheel for omicverse-skills (pyproject.toml) 2026-04-26T12:02:18,633 running bdist_wheel 2026-04-26T12:02:18,650 running build 2026-04-26T12:02:18,651 running build_py 2026-04-26T12:02:18,657 creating build/lib/omicverse_skills 2026-04-26T12:02:18,659 copying src/omicverse_skills/__init__.py -> build/lib/omicverse_skills 2026-04-26T12:02:18,661 copying src/omicverse_skills/registry.py -> build/lib/omicverse_skills 2026-04-26T12:02:18,663 copying src/omicverse_skills/notebook_index.py -> build/lib/omicverse_skills 2026-04-26T12:02:18,692 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-26T12:02:18,695 copying src/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-26T12:02:18,700 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-26T12:02:18,701 copying src/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-26T12:02:18,705 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-26T12:02:18,707 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-26T12:02:18,710 creating build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-26T12:02:18,712 copying src/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/lib/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-26T12:02:18,716 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-26T12:02:18,718 copying src/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-26T12:02:18,722 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-26T12:02:18,724 copying src/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-26T12:02:18,727 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-26T12:02:18,728 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-26T12:02:18,734 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-26T12:02:18,735 copying src/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-26T12:02:18,738 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-26T12:02:18,740 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-26T12:02:18,743 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-26T12:02:18,745 copying src/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-26T12:02:18,749 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-26T12:02:18,751 copying src/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-26T12:02:18,762 running egg_info 2026-04-26T12:02:18,772 writing src/omicverse_skills.egg-info/PKG-INFO 2026-04-26T12:02:18,775 writing dependency_links to src/omicverse_skills.egg-info/dependency_links.txt 2026-04-26T12:02:18,776 writing entry points to src/omicverse_skills.egg-info/entry_points.txt 2026-04-26T12:02:18,778 writing top-level names to src/omicverse_skills.egg-info/top_level.txt 2026-04-26T12:02:18,952 reading manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:18,966 reading manifest template 'MANIFEST.in' 2026-04-26T12:02:19,208 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-26T12:02:19,211 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-26T12:02:19,213 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-26T12:02:19,213 adding license file 'LICENSE' 2026-04-26T12:02:19,230 writing manifest file 'src/omicverse_skills.egg-info/SOURCES.txt' 2026-04-26T12:02:19,366 copying src/omicverse_skills/notebook_index.json -> build/lib/omicverse_skills 2026-04-26T12:02:19,369 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:19,370 copying src/omicverse_skills/skills/single-cell-metatime-annotation/reference.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:19,372 copying src/omicverse_skills/skills/single-cell-metatime-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:19,375 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:19,376 copying src/omicverse_skills/skills/microbiome-meta-analysis/reference.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:19,378 copying src/omicverse_skills/skills/microbiome-meta-analysis/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:19,381 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:19,382 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/reference.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:19,385 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:19,387 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:19,388 copying src/omicverse_skills/skills/single-cell-cellrank-fate/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:19,390 copying src/omicverse_skills/skills/single-cell-cellrank-fate/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:19,393 copying src/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance 2026-04-26T12:02:19,396 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:19,397 copying src/omicverse_skills/skills/bulk-metabol-multivariate/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:19,399 copying src/omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:19,402 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-26T12:02:19,403 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-26T12:02:19,405 creating build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:19,406 copying src/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:19,408 copying src/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:19,411 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:19,412 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/reference.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:19,414 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:19,417 creating build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:19,418 copying src/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:19,420 copying src/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:19,423 creating build/lib/omicverse_skills/skills/gsea-enrichment 2026-04-26T12:02:19,424 copying src/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/lib/omicverse_skills/skills/gsea-enrichment 2026-04-26T12:02:19,426 creating build/lib/omicverse_skills/skills/data-stats-analysis 2026-04-26T12:02:19,427 copying src/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/lib/omicverse_skills/skills/data-stats-analysis 2026-04-26T12:02:19,431 copying src/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity 2026-04-26T12:02:19,434 creating build/lib/omicverse_skills/skills/single-multiomics 2026-04-26T12:02:19,435 copying src/omicverse_skills/skills/single-multiomics/reference.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-04-26T12:02:19,437 copying src/omicverse_skills/skills/single-multiomics/SKILL.md -> build/lib/omicverse_skills/skills/single-multiomics 2026-04-26T12:02:19,440 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-26T12:02:19,443 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-04-26T12:02:19,444 copying src/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment 2026-04-26T12:02:19,446 creating build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:19,447 copying src/omicverse_skills/skills/single-popv-annotation/reference.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:19,450 copying src/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:19,453 copying src/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-scenic 2026-04-26T12:02:19,456 creating build/lib/omicverse_skills/skills/reference-label-transfer 2026-04-26T12:02:19,457 copying src/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/lib/omicverse_skills/skills/reference-label-transfer 2026-04-26T12:02:19,460 copying src/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends 2026-04-26T12:02:19,463 creating build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:19,464 copying src/omicverse_skills/skills/fm-foundation-models/reference.md -> build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:19,466 copying src/omicverse_skills/skills/fm-foundation-models/SKILL.md -> build/lib/omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:19,469 creating build/lib/omicverse_skills/skills/data-io-loading 2026-04-26T12:02:19,470 copying src/omicverse_skills/skills/data-io-loading/reference.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-04-26T12:02:19,473 copying src/omicverse_skills/skills/data-io-loading/SKILL.md -> build/lib/omicverse_skills/skills/data-io-loading 2026-04-26T12:02:19,475 creating build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:19,476 copying src/omicverse_skills/skills/microbiome-phylogeny/reference.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:19,479 copying src/omicverse_skills/skills/microbiome-phylogeny/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:19,481 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:19,482 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/reference.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:19,485 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:19,488 creating build/lib/omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:19,489 copying src/omicverse_skills/skills/plotting-visualization/reference.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:19,492 copying src/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/lib/omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:19,495 copying src/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference 2026-04-26T12:02:19,498 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-26T12:02:19,501 creating build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:19,502 copying src/omicverse_skills/skills/spatial-tutorials/reference.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:19,505 copying src/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/lib/omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:19,507 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-26T12:02:19,508 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-26T12:02:19,511 creating build/lib/omicverse_skills/skills/datasets-loading 2026-04-26T12:02:19,512 copying src/omicverse_skills/skills/datasets-loading/reference.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-04-26T12:02:19,515 copying src/omicverse_skills/skills/datasets-loading/SKILL.md -> build/lib/omicverse_skills/skills/datasets-loading 2026-04-26T12:02:19,517 creating build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:19,518 copying src/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:19,521 copying src/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:19,524 creating build/lib/omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:19,525 copying src/omicverse_skills/skills/fastq-analysis/reference.md -> build/lib/omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:19,527 copying src/omicverse_skills/skills/fastq-analysis/SKILL.md -> build/lib/omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:19,530 creating build/lib/omicverse_skills/skills/data-viz-plots 2026-04-26T12:02:19,531 copying src/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/lib/omicverse_skills/skills/data-viz-plots 2026-04-26T12:02:19,533 creating build/lib/omicverse_skills/skills/data-export-excel 2026-04-26T12:02:19,534 copying src/omicverse_skills/skills/data-export-excel/SKILL.md -> build/lib/omicverse_skills/skills/data-export-excel 2026-04-26T12:02:19,537 creating build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:19,538 copying src/omicverse_skills/skills/single-cell-liana-communication/reference.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:19,540 copying src/omicverse_skills/skills/single-cell-liana-communication/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:19,543 creating build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:19,544 copying src/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:19,546 copying src/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:19,549 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:19,550 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:19,552 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:19,556 copying src/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2 2026-04-26T12:02:19,559 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-26T12:02:19,562 creating build/lib/omicverse_skills/skills/data-export-pdf 2026-04-26T12:02:19,563 copying src/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/lib/omicverse_skills/skills/data-export-pdf 2026-04-26T12:02:19,566 creating build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:19,567 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:19,570 copying src/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/lib/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:19,573 creating build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:19,574 copying src/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:19,577 copying src/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/lib/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:19,579 creating build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:19,581 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:19,583 copying src/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/lib/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:19,586 copying src/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression 2026-04-26T12:02:19,590 creating build/lib/omicverse_skills/skills/single-cell-annotation 2026-04-26T12:02:19,591 copying src/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-annotation 2026-04-26T12:02:19,594 creating build/lib/omicverse_skills/skills/data-transform 2026-04-26T12:02:19,595 copying src/omicverse_skills/skills/data-transform/SKILL.md -> build/lib/omicverse_skills/skills/data-transform 2026-04-26T12:02:19,599 copying src/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration 2026-04-26T12:02:19,602 creating build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:19,603 copying src/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:19,606 copying src/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/lib/omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:19,609 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:19,610 copying src/omicverse_skills/skills/single-cell-via-trajectory/reference.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:19,613 copying src/omicverse_skills/skills/single-cell-via-trajectory/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:19,617 creating build/lib/omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:19,618 copying src/omicverse_skills/skills/micro-metabol-paired/reference.md -> build/lib/omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:19,620 copying src/omicverse_skills/skills/micro-metabol-paired/SKILL.md -> build/lib/omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:19,623 creating build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:19,624 copying src/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:19,627 copying src/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/lib/omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:19,629 creating build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:19,630 copying src/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:19,633 copying src/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/lib/omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:19,636 creating build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:19,637 copying src/omicverse_skills/skills/microbiome-da-comparison/reference.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:19,639 copying src/omicverse_skills/skills/microbiome-da-comparison/SKILL.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:19,641 creating build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:19,642 copying src/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:19,645 copying src/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/lib/omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:19,648 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:19,648 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:19,651 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:19,654 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:19,655 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/reference.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:19,657 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:19,660 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:19,661 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:19,664 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:19,666 creating build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-04-26T12:02:19,667 copying src/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing 2026-04-26T12:02:19,670 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:19,671 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:19,674 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:19,677 creating build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:19,678 copying src/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:19,680 copying src/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/lib/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:19,683 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-04-26T12:02:19,684 copying src/omicverse_skills/skills/single-cell-metatime-annotation/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-04-26T12:02:19,687 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis/references 2026-04-26T12:02:19,688 copying src/omicverse_skills/skills/microbiome-meta-analysis/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-meta-analysis/references 2026-04-26T12:02:19,691 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-04-26T12:02:19,692 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-04-26T12:02:19,695 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-04-26T12:02:19,696 copying src/omicverse_skills/skills/single-cell-cellrank-fate/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-04-26T12:02:19,699 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:19,700 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:19,702 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:19,705 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:19,707 copying src/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:19,709 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-04-26T12:02:19,710 copying src/omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-04-26T12:02:19,713 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:19,714 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:19,717 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:19,719 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:19,721 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-04-26T12:02:19,722 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-04-26T12:02:19,725 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:19,726 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:19,729 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:19,731 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:19,733 copying src/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:19,735 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:19,736 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:19,739 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:19,741 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:19,743 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:19,746 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:19,747 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:19,749 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:19,751 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:19,753 copying src/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:19,756 creating build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:19,757 copying src/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:19,759 copying src/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:19,762 copying src/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:19,764 copying src/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:19,766 creating build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:19,767 copying src/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:19,770 copying src/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:19,772 copying src/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:19,774 copying src/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:19,776 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:19,778 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:19,780 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:19,782 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:19,784 copying src/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:19,787 creating build/lib/omicverse_skills/skills/microbiome-phylogeny/references 2026-04-26T12:02:19,788 copying src/omicverse_skills/skills/microbiome-phylogeny/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-phylogeny/references 2026-04-26T12:02:19,790 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-04-26T12:02:19,791 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-04-26T12:02:19,794 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:19,795 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:19,797 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:19,800 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:19,803 copying src/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:19,805 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:19,806 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:19,808 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:19,810 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:19,812 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:19,814 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:19,815 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:19,818 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:19,820 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:19,822 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:19,824 creating build/lib/omicverse_skills/skills/single-cell-liana-communication/references 2026-04-26T12:02:19,825 copying src/omicverse_skills/skills/single-cell-liana-communication/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-liana-communication/references 2026-04-26T12:02:19,828 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-04-26T12:02:19,829 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-04-26T12:02:19,832 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:19,833 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:19,835 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:19,837 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:19,840 copying src/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:19,842 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:19,843 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:19,845 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:19,848 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:19,850 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:19,852 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:19,853 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:19,856 copying src/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:19,858 copying src/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:19,860 copying src/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:19,862 creating build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:19,863 copying src/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:19,866 copying src/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:19,869 copying src/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:19,871 copying src/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:19,873 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:19,874 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:19,877 copying src/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:19,879 copying src/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:19,882 copying src/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:19,884 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory/references 2026-04-26T12:02:19,885 copying src/omicverse_skills/skills/single-cell-via-trajectory/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-via-trajectory/references 2026-04-26T12:02:19,887 creating build/lib/omicverse_skills/skills/micro-metabol-paired/references 2026-04-26T12:02:19,888 copying src/omicverse_skills/skills/micro-metabol-paired/references/source-grounding.md -> build/lib/omicverse_skills/skills/micro-metabol-paired/references 2026-04-26T12:02:19,891 creating build/lib/omicverse_skills/skills/microbiome-da-comparison/references 2026-04-26T12:02:19,892 copying src/omicverse_skills/skills/microbiome-da-comparison/references/source-grounding.md -> build/lib/omicverse_skills/skills/microbiome-da-comparison/references 2026-04-26T12:02:19,894 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-04-26T12:02:19,895 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-04-26T12:02:19,899 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-04-26T12:02:19,900 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-04-26T12:02:19,903 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-04-26T12:02:19,904 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-04-26T12:02:19,908 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:19,909 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:19,912 copying src/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:19,915 copying src/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:19,918 copying src/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/lib/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:19,921 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-04-26T12:02:19,922 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-04-26T12:02:19,925 creating build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-04-26T12:02:19,926 copying src/omicverse_skills/skills/single-cell-metatime-annotation/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-04-26T12:02:19,929 creating build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-04-26T12:02:19,930 copying src/omicverse_skills/skills/microbiome-meta-analysis/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-04-26T12:02:19,933 creating build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-04-26T12:02:19,934 copying src/omicverse_skills/skills/single-cell-monocle2-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-04-26T12:02:19,937 creating build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-04-26T12:02:19,938 copying src/omicverse_skills/skills/single-cell-cellrank-fate/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-04-26T12:02:19,941 creating build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-04-26T12:02:19,942 copying src/omicverse_skills/skills/single-cell-differential-abundance/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-04-26T12:02:19,945 creating build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-04-26T12:02:19,946 copying src/omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-04-26T12:02:19,948 creating build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-04-26T12:02:19,950 copying src/omicverse_skills/skills/single-cell-sctour-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-04-26T12:02:19,952 creating build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-04-26T12:02:19,953 copying src/omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-04-26T12:02:19,957 creating build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-04-26T12:02:19,958 copying src/omicverse_skills/skills/single-cell-rna-velocity/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-04-26T12:02:19,962 creating build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-04-26T12:02:19,963 copying src/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-04-26T12:02:19,965 creating build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-04-26T12:02:19,967 copying src/omicverse_skills/skills/single-cell-kb-alignment/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-04-26T12:02:19,970 creating build/lib/omicverse_skills/skills/single-cell-scenic/assets 2026-04-26T12:02:19,971 copying src/omicverse_skills/skills/single-cell-scenic/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-scenic/assets 2026-04-26T12:02:19,974 creating build/lib/omicverse_skills/skills/reference-label-transfer/assets 2026-04-26T12:02:19,975 copying src/omicverse_skills/skills/reference-label-transfer/assets/acceptance.json -> build/lib/omicverse_skills/skills/reference-label-transfer/assets 2026-04-26T12:02:19,977 creating build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-04-26T12:02:19,979 copying src/omicverse_skills/skills/single-cell-clustering-backends/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-04-26T12:02:19,981 creating build/lib/omicverse_skills/skills/microbiome-phylogeny/assets 2026-04-26T12:02:19,982 copying src/omicverse_skills/skills/microbiome-phylogeny/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-phylogeny/assets 2026-04-26T12:02:19,986 creating build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-04-26T12:02:19,987 copying src/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-04-26T12:02:19,990 creating build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-04-26T12:02:19,992 copying src/omicverse_skills/skills/single-cell-trajectory-inference/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-04-26T12:02:19,994 creating build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-04-26T12:02:19,996 copying src/omicverse_skills/skills/single-cell-lda-topic-clustering/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-04-26T12:02:19,998 creating build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-04-26T12:02:19,999 copying src/omicverse_skills/skills/cross-modal-celltype-transfer/assets/acceptance.json -> build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-04-26T12:02:20,003 creating build/lib/omicverse_skills/skills/single-cell-liana-communication/assets 2026-04-26T12:02:20,004 copying src/omicverse_skills/skills/single-cell-liana-communication/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-liana-communication/assets 2026-04-26T12:02:20,007 creating build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-04-26T12:02:20,008 copying src/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-04-26T12:02:20,011 creating build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-04-26T12:02:20,012 copying src/omicverse_skills/skills/single-cell-cytotrace2/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-04-26T12:02:20,015 creating build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-04-26T12:02:20,016 copying src/omicverse_skills/skills/single-cell-cellphonedb-communication/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-04-26T12:02:20,020 creating build/lib/omicverse_skills/skills/single-cell-differential-expression/assets 2026-04-26T12:02:20,021 copying src/omicverse_skills/skills/single-cell-differential-expression/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-differential-expression/assets 2026-04-26T12:02:20,024 creating build/lib/omicverse_skills/skills/single-cell-annotation/assets 2026-04-26T12:02:20,025 copying src/omicverse_skills/skills/single-cell-annotation/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-annotation/assets 2026-04-26T12:02:20,027 creating build/lib/omicverse_skills/skills/single-cell-batch-integration/assets 2026-04-26T12:02:20,028 copying src/omicverse_skills/skills/single-cell-batch-integration/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-batch-integration/assets 2026-04-26T12:02:20,031 creating build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-04-26T12:02:20,032 copying src/omicverse_skills/skills/single-cell-via-trajectory/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-04-26T12:02:20,034 creating build/lib/omicverse_skills/skills/micro-metabol-paired/assets 2026-04-26T12:02:20,036 copying src/omicverse_skills/skills/micro-metabol-paired/assets/acceptance.json -> build/lib/omicverse_skills/skills/micro-metabol-paired/assets 2026-04-26T12:02:20,039 creating build/lib/omicverse_skills/skills/microbiome-da-comparison/assets 2026-04-26T12:02:20,040 copying src/omicverse_skills/skills/microbiome-da-comparison/assets/acceptance.json -> build/lib/omicverse_skills/skills/microbiome-da-comparison/assets 2026-04-26T12:02:20,042 creating build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-04-26T12:02:20,043 copying src/omicverse_skills/skills/single-cell-cellmatch-ontology/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-04-26T12:02:20,046 creating build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-04-26T12:02:20,047 copying src/omicverse_skills/skills/single-cell-cellvote-consensus/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-04-26T12:02:20,049 creating build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-04-26T12:02:20,050 copying src/omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-04-26T12:02:20,052 creating build/lib/omicverse_skills/skills/single-cell-preprocessing/assets 2026-04-26T12:02:20,053 copying src/omicverse_skills/skills/single-cell-preprocessing/assets/acceptance.json -> build/lib/omicverse_skills/skills/single-cell-preprocessing/assets 2026-04-26T12:02:20,056 creating build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-04-26T12:02:20,057 copying src/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json -> build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-04-26T12:02:20,196 installing to build/bdist.linux-armv7l/wheel 2026-04-26T12:02:20,197 running install 2026-04-26T12:02:20,220 running install_lib 2026-04-26T12:02:20,226 creating build/bdist.linux-armv7l/wheel 2026-04-26T12:02:20,228 creating build/bdist.linux-armv7l/wheel/omicverse_skills 2026-04-26T12:02:20,230 copying build/lib/omicverse_skills/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-26T12:02:20,232 copying build/lib/omicverse_skills/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-26T12:02:20,234 copying build/lib/omicverse_skills/notebook_index.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-26T12:02:20,237 copying build/lib/omicverse_skills/notebook_index.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills 2026-04-26T12:02:20,241 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills 2026-04-26T12:02:20,243 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:20,245 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation/references 2026-04-26T12:02:20,246 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation/references 2026-04-26T12:02:20,249 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-04-26T12:02:20,250 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation/assets 2026-04-26T12:02:20,252 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:20,254 copying build/lib/omicverse_skills/skills/single-cell-metatime-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-metatime-annotation 2026-04-26T12:02:20,258 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:20,259 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis/references 2026-04-26T12:02:20,260 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis/references 2026-04-26T12:02:20,264 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-meta-analysis/assets 2026-04-26T12:02:20,265 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis/assets 2026-04-26T12:02:20,267 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:20,269 copying build/lib/omicverse_skills/skills/microbiome-meta-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-meta-analysis 2026-04-26T12:02:20,272 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:20,274 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-04-26T12:02:20,275 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory/references 2026-04-26T12:02:20,278 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-04-26T12:02:20,280 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory/assets 2026-04-26T12:02:20,282 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:20,284 copying build/lib/omicverse_skills/skills/single-cell-monocle2-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-monocle2-trajectory 2026-04-26T12:02:20,287 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:20,289 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate/references 2026-04-26T12:02:20,290 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate/references 2026-04-26T12:02:20,293 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-04-26T12:02:20,294 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate/assets 2026-04-26T12:02:20,296 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:20,298 copying build/lib/omicverse_skills/skills/single-cell-cellrank-fate/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellrank-fate 2026-04-26T12:02:20,301 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance 2026-04-26T12:02:20,303 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:20,305 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:20,307 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:20,309 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:20,311 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/references 2026-04-26T12:02:20,315 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/assets 2026-04-26T12:02:20,316 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/assets 2026-04-26T12:02:20,318 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-26T12:02:20,319 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/scripts/dct_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance/scripts 2026-04-26T12:02:20,322 copying build/lib/omicverse_skills/skills/single-cell-differential-abundance/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-abundance 2026-04-26T12:02:20,325 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:20,326 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate/references 2026-04-26T12:02:20,328 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate/references 2026-04-26T12:02:20,330 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-04-26T12:02:20,332 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate/assets 2026-04-26T12:02:20,334 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:20,336 copying build/lib/omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-multivariate 2026-04-26T12:02:20,339 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-26T12:02:20,341 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:20,342 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:20,344 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:20,346 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/references 2026-04-26T12:02:20,349 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-04-26T12:02:20,350 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory/assets 2026-04-26T12:02:20,353 copying build/lib/omicverse_skills/skills/single-cell-sctour-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-sctour-trajectory 2026-04-26T12:02:20,356 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:20,357 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:20,360 copying build/lib/omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deseq2-analysis 2026-04-26T12:02:20,363 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:20,364 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-04-26T12:02:20,366 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution/references 2026-04-26T12:02:20,369 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-04-26T12:02:20,370 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution/assets 2026-04-26T12:02:20,372 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:20,374 copying build/lib/omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-celltype-deconvolution 2026-04-26T12:02:20,377 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:20,378 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:20,381 copying build/lib/omicverse_skills/skills/bulk-deg-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-deg-analysis 2026-04-26T12:02:20,383 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/gsea-enrichment 2026-04-26T12:02:20,385 copying build/lib/omicverse_skills/skills/gsea-enrichment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/gsea-enrichment 2026-04-26T12:02:20,388 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-stats-analysis 2026-04-26T12:02:20,390 copying build/lib/omicverse_skills/skills/data-stats-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-stats-analysis 2026-04-26T12:02:20,393 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity 2026-04-26T12:02:20,395 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:20,397 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:20,400 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:20,402 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:20,404 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/references 2026-04-26T12:02:20,407 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/assets 2026-04-26T12:02:20,408 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/assets 2026-04-26T12:02:20,411 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-26T12:02:20,413 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/scripts/graphvelo_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity/scripts 2026-04-26T12:02:20,415 copying build/lib/omicverse_skills/skills/single-cell-rna-velocity/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-rna-velocity 2026-04-26T12:02:20,418 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-multiomics 2026-04-26T12:02:20,419 copying build/lib/omicverse_skills/skills/single-multiomics/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-04-26T12:02:20,421 copying build/lib/omicverse_skills/skills/single-multiomics/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-multiomics 2026-04-26T12:02:20,425 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-26T12:02:20,426 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:20,428 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:20,430 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:20,432 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:20,433 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/references 2026-04-26T12:02:20,436 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-04-26T12:02:20,437 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/assets 2026-04-26T12:02:20,441 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-26T12:02:20,442 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts/cnmf_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery/scripts 2026-04-26T12:02:20,444 copying build/lib/omicverse_skills/skills/single-cell-cnmf-program-discovery/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cnmf-program-discovery 2026-04-26T12:02:20,447 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment 2026-04-26T12:02:20,449 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:20,450 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:20,452 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:20,455 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/workflow-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:20,457 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/references 2026-04-26T12:02:20,459 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-kb-alignment/assets 2026-04-26T12:02:20,460 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment/assets 2026-04-26T12:02:20,463 copying build/lib/omicverse_skills/skills/single-cell-kb-alignment/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-kb-alignment 2026-04-26T12:02:20,466 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:20,467 copying build/lib/omicverse_skills/skills/single-popv-annotation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:20,470 copying build/lib/omicverse_skills/skills/single-popv-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-popv-annotation 2026-04-26T12:02:20,473 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic 2026-04-26T12:02:20,475 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:20,476 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:20,478 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:20,480 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:20,482 copying build/lib/omicverse_skills/skills/single-cell-scenic/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/references 2026-04-26T12:02:20,485 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/assets 2026-04-26T12:02:20,486 copying build/lib/omicverse_skills/skills/single-cell-scenic/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/assets 2026-04-26T12:02:20,489 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-scenic/scripts 2026-04-26T12:02:20,490 copying build/lib/omicverse_skills/skills/single-cell-scenic/scripts/scenic_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic/scripts 2026-04-26T12:02:20,492 copying build/lib/omicverse_skills/skills/single-cell-scenic/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-scenic 2026-04-26T12:02:20,496 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer 2026-04-26T12:02:20,497 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:20,499 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:20,501 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:20,503 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:20,505 copying build/lib/omicverse_skills/skills/reference-label-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/references 2026-04-26T12:02:20,508 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/reference-label-transfer/assets 2026-04-26T12:02:20,509 copying build/lib/omicverse_skills/skills/reference-label-transfer/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer/assets 2026-04-26T12:02:20,511 copying build/lib/omicverse_skills/skills/reference-label-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/reference-label-transfer 2026-04-26T12:02:20,514 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends 2026-04-26T12:02:20,516 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:20,517 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:20,519 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:20,521 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:20,523 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/references 2026-04-26T12:02:20,525 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/assets 2026-04-26T12:02:20,527 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/assets 2026-04-26T12:02:20,530 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-26T12:02:20,531 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/scripts/clustering_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends/scripts 2026-04-26T12:02:20,533 copying build/lib/omicverse_skills/skills/single-cell-clustering-backends/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-clustering-backends 2026-04-26T12:02:20,537 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:20,538 copying build/lib/omicverse_skills/skills/fm-foundation-models/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:20,541 copying build/lib/omicverse_skills/skills/fm-foundation-models/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fm-foundation-models 2026-04-26T12:02:20,544 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-io-loading 2026-04-26T12:02:20,546 copying build/lib/omicverse_skills/skills/data-io-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-04-26T12:02:20,548 copying build/lib/omicverse_skills/skills/data-io-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-io-loading 2026-04-26T12:02:20,551 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:20,553 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny/references 2026-04-26T12:02:20,554 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny/references 2026-04-26T12:02:20,557 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-phylogeny/assets 2026-04-26T12:02:20,558 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny/assets 2026-04-26T12:02:20,561 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:20,563 copying build/lib/omicverse_skills/skills/microbiome-phylogeny/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-phylogeny 2026-04-26T12:02:20,566 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:20,568 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-04-26T12:02:20,569 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2/references 2026-04-26T12:02:20,572 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-04-26T12:02:20,573 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2/assets 2026-04-26T12:02:20,575 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:20,578 copying build/lib/omicverse_skills/skills/microbiome-16s-amplicon-dada2/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-16s-amplicon-dada2 2026-04-26T12:02:20,581 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:20,582 copying build/lib/omicverse_skills/skills/plotting-visualization/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:20,585 copying build/lib/omicverse_skills/skills/plotting-visualization/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/plotting-visualization 2026-04-26T12:02:20,588 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference 2026-04-26T12:02:20,590 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:20,591 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:20,593 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:20,596 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:20,598 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/references 2026-04-26T12:02:20,600 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-04-26T12:02:20,601 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/assets 2026-04-26T12:02:20,604 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-26T12:02:20,605 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/scripts/trajectory_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference/scripts 2026-04-26T12:02:20,607 copying build/lib/omicverse_skills/skills/single-cell-trajectory-inference/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-trajectory-inference 2026-04-26T12:02:20,611 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-26T12:02:20,613 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:20,614 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:20,616 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:20,618 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:20,620 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/references 2026-04-26T12:02:20,622 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-04-26T12:02:20,624 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/assets 2026-04-26T12:02:20,626 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-26T12:02:20,627 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/scripts/lda_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering/scripts 2026-04-26T12:02:20,629 copying build/lib/omicverse_skills/skills/single-cell-lda-topic-clustering/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-lda-topic-clustering 2026-04-26T12:02:20,632 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:20,633 copying build/lib/omicverse_skills/skills/spatial-tutorials/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:20,636 copying build/lib/omicverse_skills/skills/spatial-tutorials/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/spatial-tutorials 2026-04-26T12:02:20,639 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-26T12:02:20,641 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:20,642 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:20,644 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/integration-method-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:20,646 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:20,648 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/references 2026-04-26T12:02:20,651 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-04-26T12:02:20,652 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer/assets 2026-04-26T12:02:20,655 copying build/lib/omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/cross-modal-celltype-transfer 2026-04-26T12:02:20,658 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/datasets-loading 2026-04-26T12:02:20,659 copying build/lib/omicverse_skills/skills/datasets-loading/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-04-26T12:02:20,661 copying build/lib/omicverse_skills/skills/datasets-loading/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/datasets-loading 2026-04-26T12:02:20,664 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:20,665 copying build/lib/omicverse_skills/skills/single-downstream-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:20,667 copying build/lib/omicverse_skills/skills/single-downstream-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-downstream-analysis 2026-04-26T12:02:20,670 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:20,672 copying build/lib/omicverse_skills/skills/fastq-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:20,674 copying build/lib/omicverse_skills/skills/fastq-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/fastq-analysis 2026-04-26T12:02:20,677 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-viz-plots 2026-04-26T12:02:20,678 copying build/lib/omicverse_skills/skills/data-viz-plots/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-viz-plots 2026-04-26T12:02:20,681 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-excel 2026-04-26T12:02:20,682 copying build/lib/omicverse_skills/skills/data-export-excel/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-excel 2026-04-26T12:02:20,686 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:20,687 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication/references 2026-04-26T12:02:20,689 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication/references 2026-04-26T12:02:20,692 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-liana-communication/assets 2026-04-26T12:02:20,693 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication/assets 2026-04-26T12:02:20,695 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:20,697 copying build/lib/omicverse_skills/skills/single-cell-liana-communication/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-liana-communication 2026-04-26T12:02:20,701 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:20,702 copying build/lib/omicverse_skills/skills/tcga-preprocessing/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:20,704 copying build/lib/omicverse_skills/skills/tcga-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/tcga-preprocessing 2026-04-26T12:02:20,707 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:20,709 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-04-26T12:02:20,710 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references 2026-04-26T12:02:20,713 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-04-26T12:02:20,714 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets 2026-04-26T12:02:20,717 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:20,719 copying build/lib/omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-untargeted-lipidomics 2026-04-26T12:02:20,722 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2 2026-04-26T12:02:20,724 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:20,725 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:20,727 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:20,729 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:20,731 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/references 2026-04-26T12:02:20,734 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/assets 2026-04-26T12:02:20,735 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/assets 2026-04-26T12:02:20,738 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-26T12:02:20,739 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/scripts/cytotrace2_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2/scripts 2026-04-26T12:02:20,741 copying build/lib/omicverse_skills/skills/single-cell-cytotrace2/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cytotrace2 2026-04-26T12:02:20,744 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-26T12:02:20,746 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:20,747 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:20,750 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:20,752 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:20,754 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/references 2026-04-26T12:02:20,757 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-04-26T12:02:20,758 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/assets 2026-04-26T12:02:20,763 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-26T12:02:20,764 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/scripts/cpdb_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication/scripts 2026-04-26T12:02:20,766 copying build/lib/omicverse_skills/skills/single-cell-cellphonedb-communication/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellphonedb-communication 2026-04-26T12:02:20,769 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-export-pdf 2026-04-26T12:02:20,770 copying build/lib/omicverse_skills/skills/data-export-pdf/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-export-pdf 2026-04-26T12:02:20,773 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:20,775 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:20,777 copying build/lib/omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-to-single-deconvolution 2026-04-26T12:02:20,780 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:20,781 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:20,783 copying build/lib/omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-wgcna-analysis 2026-04-26T12:02:20,786 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:20,787 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:20,789 copying build/lib/omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-trajblend-interpolation 2026-04-26T12:02:20,792 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression 2026-04-26T12:02:20,794 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:20,796 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:20,798 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:20,800 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:20,802 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/references 2026-04-26T12:02:20,804 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/assets 2026-04-26T12:02:20,805 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/assets 2026-04-26T12:02:20,808 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-26T12:02:20,809 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/scripts/deg_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression/scripts 2026-04-26T12:02:20,811 copying build/lib/omicverse_skills/skills/single-cell-differential-expression/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-differential-expression 2026-04-26T12:02:20,814 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation 2026-04-26T12:02:20,816 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:20,817 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:20,819 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:20,822 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:20,823 copying build/lib/omicverse_skills/skills/single-cell-annotation/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/references 2026-04-26T12:02:20,826 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-annotation/assets 2026-04-26T12:02:20,827 copying build/lib/omicverse_skills/skills/single-cell-annotation/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation/assets 2026-04-26T12:02:20,829 copying build/lib/omicverse_skills/skills/single-cell-annotation/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-annotation 2026-04-26T12:02:20,832 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/data-transform 2026-04-26T12:02:20,833 copying build/lib/omicverse_skills/skills/data-transform/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/data-transform 2026-04-26T12:02:20,836 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration 2026-04-26T12:02:20,838 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:20,839 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:20,842 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:20,844 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/backend-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:20,846 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/references 2026-04-26T12:02:20,849 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/assets 2026-04-26T12:02:20,850 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/assets 2026-04-26T12:02:20,853 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-26T12:02:20,854 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/scripts/batch_integration_smoke.py -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration/scripts 2026-04-26T12:02:20,856 copying build/lib/omicverse_skills/skills/single-cell-batch-integration/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-batch-integration 2026-04-26T12:02:20,859 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:20,860 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:20,862 copying build/lib/omicverse_skills/skills/single-to-spatial-mapping/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-to-spatial-mapping 2026-04-26T12:02:20,865 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:20,867 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory/references 2026-04-26T12:02:20,868 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory/references 2026-04-26T12:02:20,871 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-via-trajectory/assets 2026-04-26T12:02:20,872 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory/assets 2026-04-26T12:02:20,874 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:20,876 copying build/lib/omicverse_skills/skills/single-cell-via-trajectory/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-via-trajectory 2026-04-26T12:02:20,879 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:20,881 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired/references 2026-04-26T12:02:20,882 copying build/lib/omicverse_skills/skills/micro-metabol-paired/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired/references 2026-04-26T12:02:20,885 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/micro-metabol-paired/assets 2026-04-26T12:02:20,886 copying build/lib/omicverse_skills/skills/micro-metabol-paired/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired/assets 2026-04-26T12:02:20,889 copying build/lib/omicverse_skills/skills/micro-metabol-paired/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:20,891 copying build/lib/omicverse_skills/skills/micro-metabol-paired/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/micro-metabol-paired 2026-04-26T12:02:20,894 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:20,895 copying build/lib/omicverse_skills/skills/biocontext-knowledge/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:20,897 copying build/lib/omicverse_skills/skills/biocontext-knowledge/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/biocontext-knowledge 2026-04-26T12:02:20,900 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:20,901 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:20,904 copying build/lib/omicverse_skills/skills/single-cellfate-analysis/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cellfate-analysis 2026-04-26T12:02:20,907 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:20,908 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison/references 2026-04-26T12:02:20,909 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison/references 2026-04-26T12:02:20,912 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/microbiome-da-comparison/assets 2026-04-26T12:02:20,913 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison/assets 2026-04-26T12:02:20,916 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:20,918 copying build/lib/omicverse_skills/skills/microbiome-da-comparison/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/microbiome-da-comparison 2026-04-26T12:02:20,921 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:20,922 copying build/lib/omicverse_skills/skills/bulk-combat-correction/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:20,924 copying build/lib/omicverse_skills/skills/bulk-combat-correction/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-combat-correction 2026-04-26T12:02:20,927 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:20,929 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-04-26T12:02:20,930 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology/references 2026-04-26T12:02:20,933 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-04-26T12:02:20,934 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology/assets 2026-04-26T12:02:20,936 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:20,938 copying build/lib/omicverse_skills/skills/single-cell-cellmatch-ontology/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellmatch-ontology 2026-04-26T12:02:20,941 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:20,943 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-04-26T12:02:20,944 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus/references 2026-04-26T12:02:20,947 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-04-26T12:02:20,949 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus/assets 2026-04-26T12:02:20,951 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:20,953 copying build/lib/omicverse_skills/skills/single-cell-cellvote-consensus/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-cellvote-consensus 2026-04-26T12:02:20,957 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:20,958 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-04-26T12:02:20,959 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing/references 2026-04-26T12:02:20,963 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-04-26T12:02:20,964 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing/assets 2026-04-26T12:02:20,966 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:20,968 copying build/lib/omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-preprocessing 2026-04-26T12:02:20,971 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing 2026-04-26T12:02:20,973 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:20,975 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-notebook-map.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:20,977 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:20,979 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/compatibility.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:20,981 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/references/branch-selection.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/references 2026-04-26T12:02:20,984 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/single-cell-preprocessing/assets 2026-04-26T12:02:20,985 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing/assets 2026-04-26T12:02:20,988 copying build/lib/omicverse_skills/skills/single-cell-preprocessing/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/single-cell-preprocessing 2026-04-26T12:02:20,991 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:20,992 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-04-26T12:02:20,994 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor/references 2026-04-26T12:02:20,997 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-04-26T12:02:20,998 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets 2026-04-26T12:02:21,001 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:21,003 copying build/lib/omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-metabol-pathway-multifactor 2026-04-26T12:02:21,007 creating build/bdist.linux-armv7l/wheel/omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:21,008 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/reference.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:21,010 copying build/lib/omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md -> build/bdist.linux-armv7l/wheel/./omicverse_skills/skills/bulk-stringdb-ppi 2026-04-26T12:02:21,012 running install_egg_info 2026-04-26T12:02:21,018 Copying src/omicverse_skills.egg-info to build/bdist.linux-armv7l/wheel/./omicverse_skills-0.3.0-py3.11.egg-info 2026-04-26T12:02:21,029 running install_scripts 2026-04-26T12:02:21,042 creating build/bdist.linux-armv7l/wheel/omicverse_skills-0.3.0.dist-info/WHEEL 2026-04-26T12:02:21,046 creating '/tmp/pip-wheel-xkrw4zjn/.tmp-7md6u2f4/omicverse_skills-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-26T12:02:21,051 adding 'omicverse_skills/__init__.py' 2026-04-26T12:02:21,055 adding 'omicverse_skills/notebook_index.json' 2026-04-26T12:02:21,058 adding 'omicverse_skills/notebook_index.py' 2026-04-26T12:02:21,060 adding 'omicverse_skills/registry.py' 2026-04-26T12:02:21,064 adding 'omicverse_skills/skills/biocontext-knowledge/SKILL.md' 2026-04-26T12:02:21,066 adding 'omicverse_skills/skills/biocontext-knowledge/reference.md' 2026-04-26T12:02:21,069 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/SKILL.md' 2026-04-26T12:02:21,071 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/reference.md' 2026-04-26T12:02:21,073 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/assets/acceptance.json' 2026-04-26T12:02:21,075 adding 'omicverse_skills/skills/bulk-celltype-deconvolution/references/source-grounding.md' 2026-04-26T12:02:21,078 adding 'omicverse_skills/skills/bulk-combat-correction/SKILL.md' 2026-04-26T12:02:21,079 adding 'omicverse_skills/skills/bulk-combat-correction/reference.md' 2026-04-26T12:02:21,081 adding 'omicverse_skills/skills/bulk-deg-analysis/SKILL.md' 2026-04-26T12:02:21,083 adding 'omicverse_skills/skills/bulk-deg-analysis/reference.md' 2026-04-26T12:02:21,085 adding 'omicverse_skills/skills/bulk-deseq2-analysis/SKILL.md' 2026-04-26T12:02:21,086 adding 'omicverse_skills/skills/bulk-deseq2-analysis/reference.md' 2026-04-26T12:02:21,089 adding 'omicverse_skills/skills/bulk-metabol-multivariate/SKILL.md' 2026-04-26T12:02:21,091 adding 'omicverse_skills/skills/bulk-metabol-multivariate/reference.md' 2026-04-26T12:02:21,093 adding 'omicverse_skills/skills/bulk-metabol-multivariate/assets/acceptance.json' 2026-04-26T12:02:21,095 adding 'omicverse_skills/skills/bulk-metabol-multivariate/references/source-grounding.md' 2026-04-26T12:02:21,099 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/SKILL.md' 2026-04-26T12:02:21,101 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/reference.md' 2026-04-26T12:02:21,103 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/assets/acceptance.json' 2026-04-26T12:02:21,106 adding 'omicverse_skills/skills/bulk-metabol-pathway-multifactor/references/source-grounding.md' 2026-04-26T12:02:21,109 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/SKILL.md' 2026-04-26T12:02:21,110 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/reference.md' 2026-04-26T12:02:21,112 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/assets/acceptance.json' 2026-04-26T12:02:21,115 adding 'omicverse_skills/skills/bulk-metabol-preprocessing/references/source-grounding.md' 2026-04-26T12:02:21,118 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/SKILL.md' 2026-04-26T12:02:21,120 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/reference.md' 2026-04-26T12:02:21,122 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/assets/acceptance.json' 2026-04-26T12:02:21,125 adding 'omicverse_skills/skills/bulk-metabol-untargeted-lipidomics/references/source-grounding.md' 2026-04-26T12:02:21,127 adding 'omicverse_skills/skills/bulk-stringdb-ppi/SKILL.md' 2026-04-26T12:02:21,128 adding 'omicverse_skills/skills/bulk-stringdb-ppi/reference.md' 2026-04-26T12:02:21,130 adding 'omicverse_skills/skills/bulk-to-single-deconvolution/SKILL.md' 2026-04-26T12:02:21,132 adding 'omicverse_skills/skills/bulk-to-single-deconvolution/reference.md' 2026-04-26T12:02:21,134 adding 'omicverse_skills/skills/bulk-trajblend-interpolation/SKILL.md' 2026-04-26T12:02:21,135 adding 'omicverse_skills/skills/bulk-trajblend-interpolation/reference.md' 2026-04-26T12:02:21,137 adding 'omicverse_skills/skills/bulk-wgcna-analysis/SKILL.md' 2026-04-26T12:02:21,139 adding 'omicverse_skills/skills/bulk-wgcna-analysis/reference.md' 2026-04-26T12:02:21,141 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/SKILL.md' 2026-04-26T12:02:21,143 adding 'omicverse_skills/skills/cross-modal-celltype-transfer/assets/acceptance.json' 2026-04-26T12:02:21,145 adding 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adding 'omicverse_skills/skills/single-cell-via-trajectory/assets/acceptance.json' 2026-04-26T12:02:21,470 adding 'omicverse_skills/skills/single-cell-via-trajectory/references/source-grounding.md' 2026-04-26T12:02:21,472 adding 'omicverse_skills/skills/single-cellfate-analysis/SKILL.md' 2026-04-26T12:02:21,474 adding 'omicverse_skills/skills/single-cellfate-analysis/reference.md' 2026-04-26T12:02:21,477 adding 'omicverse_skills/skills/single-downstream-analysis/SKILL.md' 2026-04-26T12:02:21,478 adding 'omicverse_skills/skills/single-downstream-analysis/reference.md' 2026-04-26T12:02:21,481 adding 'omicverse_skills/skills/single-multiomics/SKILL.md' 2026-04-26T12:02:21,482 adding 'omicverse_skills/skills/single-multiomics/reference.md' 2026-04-26T12:02:21,484 adding 'omicverse_skills/skills/single-popv-annotation/SKILL.md' 2026-04-26T12:02:21,486 adding 'omicverse_skills/skills/single-popv-annotation/reference.md' 2026-04-26T12:02:21,488 adding 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removing build/bdist.linux-armv7l/wheel 2026-04-26T12:02:21,744 Building wheel for omicverse-skills (pyproject.toml): finished with status 'done' 2026-04-26T12:02:21,763 Created wheel for omicverse-skills: filename=omicverse_skills-0.3.0-py3-none-any.whl size=515758 sha256=b0577e1cf0832ccd3f5e200c360c95a133cd1378494b57dc9d93960e587166dc 2026-04-26T12:02:21,765 Stored in directory: /tmp/pip-ephem-wheel-cache-ws96mwgh/wheels/ac/d6/6b/b899400ec83e03248d2f3daa53f30478afc196839132222fda 2026-04-26T12:02:21,787 Successfully built omicverse-skills 2026-04-26T12:02:21,801 Removed build tracker: '/tmp/pip-build-tracker-yyckt8xd'