2026-04-27T13:29:06,517 Created temporary directory: /tmp/pip-ephem-wheel-cache-ltfzfyv3 2026-04-27T13:29:06,519 Created temporary directory: /tmp/pip-build-tracker-3i0vqi4i 2026-04-27T13:29:06,519 Initialized build tracking at /tmp/pip-build-tracker-3i0vqi4i 2026-04-27T13:29:06,520 Created build tracker: /tmp/pip-build-tracker-3i0vqi4i 2026-04-27T13:29:06,520 Entered build tracker: /tmp/pip-build-tracker-3i0vqi4i 2026-04-27T13:29:06,521 Created temporary directory: /tmp/pip-wheel-cut5j4d3 2026-04-27T13:29:06,524 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-27T13:29:06,526 Created temporary directory: /tmp/pip-ephem-wheel-cache-d6drvw4t 2026-04-27T13:29:06,547 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-27T13:29:06,551 2 location(s) to search for versions of pysam: 2026-04-27T13:29:06,551 * https://pypi.org/simple/pysam/ 2026-04-27T13:29:06,551 * https://www.piwheels.org/simple/pysam/ 2026-04-27T13:29:06,552 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2026-04-27T13:29:06,553 Getting page https://pypi.org/simple/pysam/ 2026-04-27T13:29:06,554 Found index url https://pypi.org/simple 2026-04-27T13:29:06,754 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2026-04-27T13:29:06,839 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2026-04-27T13:29:06,840 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2026-04-27T13:29:06,840 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2026-04-27T13:29:06,841 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2026-04-27T13:29:06,842 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2026-04-27T13:29:06,843 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2026-04-27T13:29:06,843 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2026-04-27T13:29:06,844 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2026-04-27T13:29:06,845 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2026-04-27T13:29:06,845 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2026-04-27T13:29:06,846 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2026-04-27T13:29:06,847 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2026-04-27T13:29:06,848 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2026-04-27T13:29:06,849 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2026-04-27T13:29:06,849 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2026-04-27T13:29:06,850 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2026-04-27T13:29:06,850 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2026-04-27T13:29:06,851 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,851 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,852 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,852 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,853 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,854 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2026-04-27T13:29:06,854 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,855 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,856 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,856 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,857 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,857 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2026-04-27T13:29:06,858 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,860 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,860 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,861 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2026-04-27T13:29:06,861 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2026-04-27T13:29:06,862 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,864 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,865 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,865 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2026-04-27T13:29:06,866 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,868 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,869 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,869 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2026-04-27T13:29:06,870 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,870 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,872 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,872 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2026-04-27T13:29:06,873 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,874 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,874 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,875 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,875 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,876 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2026-04-27T13:29:06,877 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,878 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,878 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,880 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2026-04-27T13:29:06,880 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,881 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,881 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,882 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,883 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,883 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2026-04-27T13:29:06,884 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,885 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,885 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,886 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,886 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,887 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2026-04-27T13:29:06,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,889 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,889 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,890 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,890 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2026-04-27T13:29:06,891 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,891 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,892 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,893 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,893 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,894 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,895 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2026-04-27T13:29:06,895 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,896 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,897 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,897 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,898 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,898 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,898 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2026-04-27T13:29:06,899 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2026-04-27T13:29:06,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,901 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,901 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,902 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,903 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,903 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,905 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,906 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,906 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,907 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,907 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,908 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,908 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,909 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,909 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2026-04-27T13:29:06,910 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,911 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,911 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,912 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,912 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,913 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,914 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2026-04-27T13:29:06,914 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,915 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,916 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,916 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,917 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,917 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,918 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2026-04-27T13:29:06,918 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,919 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,920 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,920 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,921 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,922 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,922 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,923 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,923 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,924 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,925 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,925 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,926 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2026-04-27T13:29:06,926 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,927 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,927 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,928 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,929 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,930 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,930 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,931 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,932 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,932 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,933 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,934 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,934 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,934 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,935 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,935 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2026-04-27T13:29:06,936 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,936 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,937 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,938 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,938 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,939 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,939 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,940 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,941 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,941 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,942 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,942 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,943 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,943 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,944 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,944 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,945 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,946 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,946 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,947 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,947 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2026-04-27T13:29:06,948 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,948 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,949 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,950 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,950 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,951 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,951 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,951 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,952 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,952 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,953 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,953 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,954 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,955 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,955 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,956 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,956 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,957 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,957 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,958 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,959 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2026-04-27T13:29:06,959 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,960 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,960 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,961 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,961 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,962 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,963 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,963 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,964 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,965 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,965 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,966 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,967 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,967 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,968 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,968 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,969 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,970 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,970 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,971 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-04-27T13:29:06,971 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2026-04-27T13:29:06,972 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,973 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,974 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,974 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ba/d9a85addaaceb6e64e07498aa2f49c34851c72e1c367e91b43b47a6cdd91/pysam-0.21.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,975 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/b8/25f28c27f0f002172d02be5f8c7f65d13ee4535193da7690b32e84f04e53/pysam-0.21.0-cp311-cp311-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,975 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/44/a7/efdfb962af008eb2f0425885a230a7dc288de1bb2f09dde3d938a2ee540a/pysam-0.21.0-cp311-cp311-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-04-27T13:29:06,976 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/4e/cd/d162987bca18d1d58a1b0be2065df6177187350bf3a764a5870d924ab635/pysam-0.23.1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,048 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/0d/a261e3f920d564805dafa04b81999343e035f677ff679c6d58afea7f4026/pysam-0.23.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,049 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cb/16/df305e38eacb34b570bc5dfaf103a6b5da9544cdc43944e7bf84c5341fc6/pysam-0.23.1-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,049 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/71/19/7be38a68ce7703dda258be1d6b870986bfad1bcb3e8638e97ed358792d1f/pysam-0.23.1-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,050 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/11/f01882c8f36119de9a46e0a645f68490457a78c38db16e8d379f90e69fc4/pysam-0.23.1-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,050 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cc/58/1dab62cb84f4742c7bc2d9bfe939784463b05ed2207bceace43e0a43b51e/pysam-0.23.1-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,050 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/49/3a45777f59c0e299d9bb42a96161acd62249487f536d7b36f47bdd855a8a/pysam-0.23.1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,051 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/a8/ed6c4e894a36c3a44a3c5b944415f6049af4e9d07c2a5028745cb2a38ebf/pysam-0.23.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,051 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/5a/4a4d11949c5acad2fc71bdaffded5a723be6eefb5c666beabb9b632338db/pysam-0.23.1-cp313-cp313-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,052 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/5d/75ceb4e0d5f60749bd5343381eeb05f816e1e2618c5fdacf81945f9ba7c9/pysam-0.23.1-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,053 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/74/0b1a8d1157d387d1018155aefaa3463c704d39040f3ee591ff0edcabb8d4/pysam-0.23.1-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,053 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/a8/d7cc1b2d98be534a44a7807ce55151b51f6349df9be286681c49c06beedf/pysam-0.23.1-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,054 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/db/4a/a0677d7a5e67830aa3f5900d4da389e396d68015e01576275557b151dba5/pysam-0.23.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,054 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/69/67b9fd44d596e30d23c4362cd5b38bee2f7d57750b52fb0464effdd93e2f/pysam-0.23.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,055 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/01/37/6e05516f3d2dd58ec679981af9cd6e0ae1baae5528ba393ae5a8c186fad2/pysam-0.23.1-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,056 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/f5/e5d1441914a85546756fbec0e1b11db639f1b8153ff1d8aed87ffbf0fccd/pysam-0.23.1-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,057 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/71/0d/f71b8dad83810fd06a89b232704335aec50ee5cf52b655942240d9106d69/pysam-0.23.1-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,057 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/44/96b64db5b5379058f52b03861ff603fe2accc8dfbc098acc2927d94153e0/pysam-0.23.1-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,057 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/62/d1/fa919b62a846285dcb40a0fb24ab3c33a55a49a01c7be329d7dad05129a8/pysam-0.23.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,058 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/b8/ce8b37970c88ed8cbe911cbe1039441b2a77c564732fc979e1d0d525e419/pysam-0.23.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,058 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bd/6f/608050478b4fac9f5cf4c747166580cc30ae8da32879d03fcb798ed7a7d8/pysam-0.23.1-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,059 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/2c/28fcf1fe7e395deaa9378a66d6ce987d89340bcade43f73473de503c0d88/pysam-0.23.1-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,060 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/19/38/1b8dda85e11de81301aab14f84f92964bfd58759de8847c4bf34bbf86049/pysam-0.23.1-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,060 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/4d/2ac65d1a42f25a14975ed98a8a2408dd5b8f4f5950d270b7c8699870e9f3/pysam-0.23.1-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,061 Found link https://files.pythonhosted.org/packages/d6/98/8d46ef77c67fc304dd1f2d7a2a1d24ef7b7e7d5335185a5ce66efcc732dc/pysam-0.23.1.tar.gz (from https://pypi.org/simple/pysam/) 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https://files.pythonhosted.org/packages/22/a3/b16e318f0a5773dae2d5782f8253b780da155353f6fe672aee40f140b069/pysam-0.23.2-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,065 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/0c/dfe3c4a71ea6f2fc645e99cfb9eda9f99a447bb878636cda1594d6b7377f/pysam-0.23.2-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,065 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/d2/4265ca463b23e89ce4a3f0d9330218b24e2a60e26f2ce689c70b53fa00da/pysam-0.23.2-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,066 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/79/83/da2a48e27140704ce2b9482ef75ae0b47f647616f99fbf2ba4510341fab1/pysam-0.23.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,076 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/62/95/08c724423348afc05be0c5d4e8ed3e080c87cdd571f8c9b6829a9b43639a/pysam-0.23.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,077 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/33/23/2dd40665f139d03b3ecd1e4a59007aa124c27297ceb425dc7faea09d9857/pysam-0.23.2-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,078 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/08/fd/03591b8197a389505631e829df1580601dc1a242206c7f9479c80a79fe62/pysam-0.23.2-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,078 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/bb/f6d41e31b5cd15fee85f85c50e59aa49ef3ac1f11254fb5ac576b6cf47a5/pysam-0.23.2-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,079 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/13/ed/c1b50761954b3e028232f64fbc6176b04d911846ba097a51601f965abae1/pysam-0.23.2-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,079 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f6/ad/43ededc53c433425863d54102f01fda1873bc023710a679155893bbbe4a5/pysam-0.23.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,080 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/13/85/ba39ea8bce5644bdba3ea0244454035c431076bc3881f763cc5b0d831a60/pysam-0.23.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,081 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5f/8b/6bc8526993faa65eedf20f6442114b43c283538a6cc81e44aee35be72945/pysam-0.23.2-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,081 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3b/70/d58205bda8f7d018822a5709c02d83302acddbe3a4fde418fedab20c9c96/pysam-0.23.2-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,082 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/97/67ec04336b8e6b81e69fc3df907753d3216df6906f09b4d482298a718e75/pysam-0.23.2-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,082 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/87/154126c39e272b182fb368179c0e05c561dc34edfd224f31483a65ce86cb/pysam-0.23.2-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,083 Found link https://files.pythonhosted.org/packages/06/55/0a4898c9ccbf6e5e9a08ce6a47b32ad58c1b56fc85b810ae055e240de8c5/pysam-0.23.2.tar.gz (from https://pypi.org/simple/pysam/) 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https://files.pythonhosted.org/packages/8e/1a/79a2c1bea757cd432a2d67087feb1e3dc8226b49fc926f2d844b3badd147/pysam-0.23.3-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,086 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/ac/fc98ab9bc6bd5d1205fd71c7fd49e33663199cc66645ab0e8db1e572f774/pysam-0.23.3-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,087 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/0b/0ff157244e2af25e1a8a880f4d2c050d6b49791b32342dc8886a27d388c4/pysam-0.23.3-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,087 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/71/59/74eccdbb18a26a49d99b9cef50e3630b76b1c430756e6f04891d12f4d43f/pysam-0.23.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,088 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/de/12/ae4e639c9187bfd60f3110d9166bf079044e091011f400173bebf2740eae/pysam-0.23.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,088 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/f3/e8cd509f5250e0656076cd0f4a6c9e7d2c520e5599272a8519a3d50ca6ba/pysam-0.23.3-cp311-cp311-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,089 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7b/98/936efaa190ad843c71ca397addc02e676ea4fb389437e2ca0471ad39efb0/pysam-0.23.3-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,090 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/dd/432569a859c5820b882fb692628b0df7cc9de1fe61c5eb5b979df31a7720/pysam-0.23.3-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,090 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/2a8060a279373eb64c5c77e7a0ef2e5bd0d3adc85623aa228d877038f2a2/pysam-0.23.3-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,091 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a2/6b/dd9f94da44463ecfddb7075f1048c044155c725d7d79fde2e7957561a3b0/pysam-0.23.3-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,091 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f3/e9/686e711a559a02e4c3ba0bc78cf031d9ddb525e9f0b2984d1b66536ba94a/pysam-0.23.3-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,092 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/82/fca396e13969d1020956b02e567e0d357be0af0f3aebc2b4d97bed780a6d/pysam-0.23.3-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,092 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/df/a6/c100df6c8118b4ce1f9c086bb9cf5bccd4f71d05ceb2ecf474f3b0ea87b8/pysam-0.23.3-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,093 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/92/32e1b13f30f16fe2c948f9b9e04c6e7698beaa539ea1a2bcddc51ed6c9b7/pysam-0.23.3-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,093 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/7d/ccfaa2d6f9f07b357696b07883d5c5471f980938c2293324631425d95523/pysam-0.23.3-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,094 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/88/87/55cabf614bcc96f4a548ab4cf5fe465dd562d193f4f4cd5246cc0a1a18ab/pysam-0.23.3-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,095 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1f/2f/4708f52028610af96fa82e3ef46bcf96a35f1bd3c38aa6f015b31b578fff/pysam-0.23.3-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,095 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/35/e65f76cfa17d680017bbb61f2a2b3ad34169de5c3747ed4273c194ad13b3/pysam-0.23.3-cp313-cp313-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,096 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/8d/cd/1448d1a7702379ef7bf92146a91e452357a0ab1240114986de9548475e08/pysam-0.23.3-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,103 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/f1/892d91d329a0ca56656486f86e9fc79f9e0dd4255ab5c6461cceae6894d4/pysam-0.23.3-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,104 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/39/ed5b769e6d0291cf5ad43ce007455e95a974b770c2f04dfbc7dcf4f3f02f/pysam-0.23.3-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,104 Found link https://files.pythonhosted.org/packages/7c/2b/1cf19890a0e4c73ad2672ce7eb485606c4bd2846eef2d892c078ab193c92/pysam-0.23.3.tar.gz (from https://pypi.org/simple/pysam/) 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pysam: https://files.pythonhosted.org/packages/21/48/92dddc8df65b576c9d30752650c89301b5222d4ac10187724796cedfd723/pysam-0.24.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,107 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/07/ff/eee9caac42c255150cc7eae19afa71bd2bb8347fd9895196f7daae2ccd62/pysam-0.24.0-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,108 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/7f/da483a98b11690f3c4b24f4aa12b7e0d0d1e19da8b8ab45785c129240eae/pysam-0.24.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,108 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/b3/1d586b4db6ff7220ac1df4b9588fae7c2622680ca51d53aa7cf32ee73604/pysam-0.24.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,109 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6d/29/5fe6f53416cfc17cbe1440f5f55b655e5dcb64b67e18cae9b0a38366db0b/pysam-0.24.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,110 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/75/69379edfcd26c88f749e29b5d3aee9044fbd201c1a678371e7ccd9010937/pysam-0.24.0-cp311-cp311-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,110 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/13/6d/2e2a80cda66b152ec143ceb1784e56d8abc6abeeeb65f8ef6aa52c731038/pysam-0.24.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,111 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/91/70/852f6917e9d7592482db2c43ccd91fa57158cf20ba07c31e9a477af84b9d/pysam-0.24.0-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,112 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b0/6b/0596765a59253958488fc7a8816df347d815ac3850a7a9cab785c1b1e184/pysam-0.24.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,112 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/27/cc422d11961a00bd04aa9a8d9a63683a1083fe2e6a491c285a94998d6751/pysam-0.24.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,113 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/98/c1/37f2fcccce3f1494147e46ccc04996226defe9ccae8251a9ce61296fa599/pysam-0.24.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,113 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/8a/df2be69f699b0a4360fd35a847636a2230a17dbaa02c98dc34831cdfb810/pysam-0.24.0-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,114 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/0f/e7f1ff3a1cabc6c4486a7ee1b0506aedf2f5f8329760ac1f4e8032feef2b/pysam-0.24.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,115 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/11/34/877f20c2e5416e054036f6521fc6606ced8d2819bfb84979a2632b30db11/pysam-0.24.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,115 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/e0/5ef3228359045ee546cebd7ffa602699d4aaf9bf60dac3511afb8cbfa151/pysam-0.24.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,116 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/86/79/2f5151ac001d8c74fb047036bfea9e4e897939e6587d3c4d512e46c450b1/pysam-0.24.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,116 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d1/2c/fd59b47677a1df3efa64172dcd9b99fa7db437de8c663f08120ebd4db835/pysam-0.24.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,117 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5c/35/95ae2b839668c4fa729243f05a208afaba4a1007e7aaaabf54a409fb6cf8/pysam-0.24.0-cp313-cp313-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,117 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c4/ea/066ce356c5df3c2d42b72801f768d41bf691f58f6d2a90f6334fbed39785/pysam-0.24.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,118 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/9f/1249435f8c87c9a90c475f54c0fa1881506112ca2658356a29a8c959990a/pysam-0.24.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,118 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/27/9a/9b9a261366a96a298080f735a31b031df71831c1cc64d9bff7966a0fbbec/pysam-0.24.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,119 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/38/1940157ce6fcfb85e8658292f6736f3cbdefb51c3d4069ec64236c40b1e1/pysam-0.24.0-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,120 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/65/a4559d4ff4a210d2a26d7ca0712e4e738cbfc963135f86e8ae807ca420eb/pysam-0.24.0-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,120 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/11/93cb13e523ef57d2224ce41a6fc1842626f2088adf299cbc611528de84c5/pysam-0.24.0-cp314-cp314-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,121 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/67/68/23e35297fa8906040f33db2908baf20e7f79a767a150cc6cc068b3135e89/pysam-0.24.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,122 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/61/8a4c6af099d7d5e0026bc4cdbf9479efa396ef6a53d814e8e0faaed05f2a/pysam-0.24.0-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,122 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/6d/106e39a8ed7f3cce18e819c475d15828f6bb67202410e61b8d0e5c966e2b/pysam-0.24.0-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,123 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6a/7565a90b51bc0c948406eccae2f9f148f036d4c21f0b0c7a052f9f6ff937/pysam-0.24.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,123 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/f5/cde3e26c010b10878e1c651131ea8fdf9c6cb8fb24b36cc349746d8e4011/pysam-0.24.0-cp38-cp38-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,123 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a1/e3/2b6e0a80ae32266486d56c2d6aa735b62bd32ec1e4eea8abffd4e0b65048/pysam-0.24.0-cp38-cp38-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,124 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/61/7e/aadac00907c933ff6e54b72dac5949fd775f6156e2f57a6b8cf92a94aa42/pysam-0.24.0-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,124 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/fd/1d19bbed23239ef05ad78ee9653f9d922883270133f7fdac0e724e4bf8ba/pysam-0.24.0-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,125 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/34/00326ae4fb032ec53e7501f3ac9c7abfbd2ade8981f9cc7bd4c066529b98/pysam-0.24.0-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,126 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/1e/6063ca74b14b656d440276247c3aab51bd7052ae191858e79f15e6454da7/pysam-0.24.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,126 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a2/5c/d0d21b703fca7954a8b5fe4b97344ec0fb0b7c0a76b2cfcef8752a68e2e4/pysam-0.24.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,127 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c0/5a/f7a5aeae0187ad225db46a505e8191f130688a8d0e3a1ae0f618ef24cafc/pysam-0.24.0-cp39-cp39-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,127 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/81/e960b1e70b5d2ab3c8f6de54bb0a77f506833b48f5034b4c06030197ac25/pysam-0.24.0-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,128 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3a/14/5619959d3c5b215a7c4fdcd7c6f65beb21eba7b08d1c2ce8acd9d38645d7/pysam-0.24.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,129 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/f1/6d2d6c9dddb257ddb42c6aa1e732183918cfc939c11e09de6e7f8723f44a/pysam-0.24.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,130 Found link https://files.pythonhosted.org/packages/09/9b/e856ad525ed0847810cca936ee551b8e0a709525fea34e0e0e723173f62d/pysam-0.24.0.tar.gz (from 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(requires-python:>=3.8) 2026-04-27T13:29:07,355 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.3-cp39-cp39-linux_armv6l.whl#sha256=438dcf365a8c4784af31863ae475247a1a2b5024f8799c569692565e7463d9e0 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,356 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.3-cp39-cp39-linux_armv7l.whl#sha256=438dcf365a8c4784af31863ae475247a1a2b5024f8799c569692565e7463d9e0 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,356 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.2-cp311-cp311-linux_armv6l.whl#sha256=df307c80231cfd02dc9725519fb32e61bb6f3cfce6c3058a3c95d38b8f46bd48 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-04-27T13:29:07,357 Skipping link: No binaries permitted for pysam: 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https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,385 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,386 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,386 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,387 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,387 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,388 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,388 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,389 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,389 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,390 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,391 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,391 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,392 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,392 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,393 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,394 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,394 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,395 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,395 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,396 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,396 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,397 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,397 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,398 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,399 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,399 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,400 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,401 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,401 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,402 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,403 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,403 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,404 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,404 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,405 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,405 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,406 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,406 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,407 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,407 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,408 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,409 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,409 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,410 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,410 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,411 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,412 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,412 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,413 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,413 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,414 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,414 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,415 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,415 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,416 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,417 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,417 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,418 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,418 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,419 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,420 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,420 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,421 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,421 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,422 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,422 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,423 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,423 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,424 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,424 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,425 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,426 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,426 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,427 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,428 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,429 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,429 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,429 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,430 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,430 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,431 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,431 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,432 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,432 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,433 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,434 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,434 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,435 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,436 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,436 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,437 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,438 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,438 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,439 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,439 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,440 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,440 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,441 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,442 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,442 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,443 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,443 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,444 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,445 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,445 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,446 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,447 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,447 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,448 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,448 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,449 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,449 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,450 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,451 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,451 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,452 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,452 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,453 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,454 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,454 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,455 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,455 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,456 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,456 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,457 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,457 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,458 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,459 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,459 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,460 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,461 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,461 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,462 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,462 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,463 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,464 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,464 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2026-04-27T13:29:07,465 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2026-04-27T13:29:07,465 Skipping link: not a file: https://pypi.org/simple/pysam/ 2026-04-27T13:29:07,491 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2026-04-27T13:29:07,510 Collecting pysam==0.24.0 2026-04-27T13:29:07,513 Created temporary directory: /tmp/pip-unpack-wfdqyn4n 2026-04-27T13:29:07,742 Downloading pysam-0.24.0.tar.gz (5.2 MB) 2026-04-27T13:29:10,509 Added pysam==0.24.0 from https://files.pythonhosted.org/packages/09/9b/e856ad525ed0847810cca936ee551b8e0a709525fea34e0e0e723173f62d/pysam-0.24.0.tar.gz to build tracker '/tmp/pip-build-tracker-3i0vqi4i' 2026-04-27T13:29:10,514 Created temporary directory: /tmp/pip-build-env-b0d6vj5c 2026-04-27T13:29:10,519 Installing build dependencies: started 2026-04-27T13:29:10,520 Running command pip subprocess to install build dependencies 2026-04-27T13:29:11,656 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-27T13:29:12,143 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-27T13:29:12,166 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-27T13:29:13,961 Collecting setuptools>=59.0 2026-04-27T13:29:14,052 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-27T13:29:16,130 Collecting Cython<4,>=3 2026-04-27T13:29:16,945 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-04-27T13:29:20,186 Installing collected packages: setuptools, Cython 2026-04-27T13:29:27,219 Creating /tmp/pip-build-env-b0d6vj5c/overlay/local/bin 2026-04-27T13:29:27,221 changing mode of /tmp/pip-build-env-b0d6vj5c/overlay/local/bin/cygdb to 755 2026-04-27T13:29:27,223 changing mode of /tmp/pip-build-env-b0d6vj5c/overlay/local/bin/cython to 755 2026-04-27T13:29:27,225 changing mode of /tmp/pip-build-env-b0d6vj5c/overlay/local/bin/cythonize to 755 2026-04-27T13:29:27,249 Successfully installed Cython-3.2.4 setuptools-82.0.1 2026-04-27T13:29:27,612 Installing build dependencies: finished with status 'done' 2026-04-27T13:29:27,619 Getting requirements to build wheel: started 2026-04-27T13:29:27,620 Running command Getting requirements to build wheel 2026-04-27T13:29:28,227 # pysam: Cython 3.2.4 is available - using cythonize if necessary 2026-04-27T13:29:28,227 # pysam: htslib mode is shared 2026-04-27T13:29:28,227 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-04-27T13:29:28,228 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-04-27T13:29:28,229 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2026-04-27T13:29:28,229 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2026-04-27T13:29:28,530 checking for gcc... arm-linux-gnueabihf-gcc 2026-04-27T13:29:28,815 checking whether the C compiler works... yes 2026-04-27T13:29:28,817 checking for C compiler default output file name... a.out 2026-04-27T13:29:28,986 checking for suffix of executables... 2026-04-27T13:29:29,190 checking whether we are cross compiling... no 2026-04-27T13:29:29,304 checking for suffix of object files... o 2026-04-27T13:29:29,383 checking whether the compiler supports GNU C... yes 2026-04-27T13:29:29,456 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-04-27T13:29:29,628 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-04-27T13:29:29,632 checking for ranlib... ranlib 2026-04-27T13:29:29,641 checking for grep that handles long lines and -e... /usr/bin/grep 2026-04-27T13:29:29,716 checking for C compiler warning flags... -Wall 2026-04-27T13:29:29,885 checking for arm-linux-gnueabihf-gcc options needed to detect all undeclared functions... none needed 2026-04-27T13:29:29,972 checking for stdio.h... yes 2026-04-27T13:29:30,120 checking for stdlib.h... yes 2026-04-27T13:29:30,237 checking for string.h... yes 2026-04-27T13:29:30,354 checking for inttypes.h... yes 2026-04-27T13:29:30,475 checking for stdint.h... yes 2026-04-27T13:29:30,596 checking for strings.h... yes 2026-04-27T13:29:30,720 checking for sys/stat.h... yes 2026-04-27T13:29:30,859 checking for sys/types.h... yes 2026-04-27T13:29:31,045 checking for unistd.h... yes 2026-04-27T13:29:31,203 checking for sys/param.h... yes 2026-04-27T13:29:31,381 checking whether _XOPEN_SOURCE is declared... no 2026-04-27T13:29:31,475 checking whether __get_cpuid_max is declared... no 2026-04-27T13:29:31,567 checking whether __cpuid_count is declared... no 2026-04-27T13:29:31,707 checking for x86intrin.h... no 2026-04-27T13:29:31,711 checking for pkg-config... /usr/bin/pkg-config 2026-04-27T13:29:31,717 checking pkg-config is at least version 0.9.0... yes 2026-04-27T13:29:31,939 checking for arm-linux-gnueabihf-gcc option to enable large file support... -D_FILE_OFFSET_BITS=64 2026-04-27T13:29:31,945 checking shared library type for unknown-Linux... plain .so 2026-04-27T13:29:32,064 checking whether the linker supports versioned symbols... no 2026-04-27T13:29:32,244 checking whether the compiler accepts -fvisibility=hidden... yes 2026-04-27T13:29:32,424 checking build system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:32,425 checking host system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:32,647 checking for getpagesize... yes 2026-04-27T13:29:32,982 checking for working mmap... yes 2026-04-27T13:29:33,174 checking for gmtime_r... yes 2026-04-27T13:29:33,371 checking for fsync... yes 2026-04-27T13:29:33,631 checking for drand48... yes 2026-04-27T13:29:33,841 checking for srand48_deterministic... no 2026-04-27T13:29:34,028 checking for getauxval... yes 2026-04-27T13:29:34,236 checking for elf_aux_info... no 2026-04-27T13:29:34,468 checking for posix_memalign... yes 2026-04-27T13:29:34,630 checking whether fdatasync is declared... yes 2026-04-27T13:29:34,814 checking for fdatasync... yes 2026-04-27T13:29:34,986 checking for __attribute__((constructor))... yes 2026-04-27T13:29:35,176 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-04-27T13:29:35,607 checking for library containing log... -lm 2026-04-27T13:29:35,707 checking for zlib.h... yes 2026-04-27T13:29:35,890 checking for inflate in -lz... yes 2026-04-27T13:29:36,100 checking for library containing recv... none required 2026-04-27T13:29:36,187 checking for bzlib.h... yes 2026-04-27T13:29:36,369 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-04-27T13:29:36,757 checking for lzma.h... yes 2026-04-27T13:29:36,980 checking for lzma_easy_buffer_encode in -llzma... yes 2026-04-27T13:29:36,982 checking whether htscodecs files are present... yes 2026-04-27T13:29:37,062 checking for libdeflate.h... yes 2026-04-27T13:29:37,271 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-04-27T13:29:37,429 checking for curl/curl.h... yes 2026-04-27T13:29:37,826 checking for curl_easy_pause in -lcurl... yes 2026-04-27T13:29:38,039 checking for CCHmac... no 2026-04-27T13:29:38,671 checking for library containing HMAC... -lcrypto 2026-04-27T13:29:38,863 checking for library containing regcomp... none required 2026-04-27T13:29:38,933 configure: creating ./config.status 2026-04-27T13:29:39,262 config.status: creating config.mk 2026-04-27T13:29:39,324 config.status: creating htslib.pc.tmp 2026-04-27T13:29:39,394 config.status: creating config.h 2026-04-27T13:29:39,442 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-04-27T13:29:39,803 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-27T13:29:39,804 !! 2026-04-27T13:29:39,805 ******************************************************************************** 2026-04-27T13:29:39,805 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-27T13:29:39,806 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-27T13:29:39,807 or your builds will no longer be supported. 2026-04-27T13:29:39,808 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-27T13:29:39,808 ******************************************************************************** 2026-04-27T13:29:39,810 !! 2026-04-27T13:29:39,810 corresp(dist, value, root_dir) 2026-04-27T13:29:40,048 # pysam: htslib configure options: --enable-libcurl 2026-04-27T13:29:40,049 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-04-27T13:29:40,049 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-04-27T13:29:40,050 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-04-27T13:29:40,050 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-04-27T13:29:40,051 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-04-27T13:29:40,051 # pysam: htslib_config PLATFORM=default 2026-04-27T13:29:40,052 # pysam: config_option: ENABLE_GCS=1 2026-04-27T13:29:40,052 # pysam: config_option: ENABLE_PLUGINS=0 2026-04-27T13:29:40,053 # pysam: config_option: ENABLE_S3=1 2026-04-27T13:29:40,054 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-04-27T13:29:40,054 # pysam: config_option: HAVE_HMAC=1 2026-04-27T13:29:40,055 # pysam: config_option: HAVE_LIBBZ2=1 2026-04-27T13:29:40,055 # pysam: config_option: HAVE_LIBCURL=1 2026-04-27T13:29:40,056 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-04-27T13:29:40,056 # pysam: config_option: HAVE_LIBLZMA=1 2026-04-27T13:29:40,057 # pysam: config_option: HAVE_MMAP=1 2026-04-27T13:29:40,058 running egg_info 2026-04-27T13:29:40,058 writing pysam.egg-info/PKG-INFO 2026-04-27T13:29:40,061 writing dependency_links to pysam.egg-info/dependency_links.txt 2026-04-27T13:29:40,063 writing top-level names to pysam.egg-info/top_level.txt 2026-04-27T13:29:40,112 reading manifest file 'pysam.egg-info/SOURCES.txt' 2026-04-27T13:29:40,150 reading manifest template 'MANIFEST.in' 2026-04-27T13:29:40,152 warning: no files found matching 'KNOWN_BUGS' 2026-04-27T13:29:40,152 warning: no files found matching 'THANKS' 2026-04-27T13:29:40,160 no previously-included directories found matching 'tests' 2026-04-27T13:29:40,276 adding license file 'COPYING' 2026-04-27T13:29:40,277 adding license file 'AUTHORS' 2026-04-27T13:29:40,300 writing manifest file 'pysam.egg-info/SOURCES.txt' 2026-04-27T13:29:40,419 Getting requirements to build wheel: finished with status 'done' 2026-04-27T13:29:40,422 Created temporary directory: /tmp/pip-modern-metadata-yi9_7rhl 2026-04-27T13:29:40,424 Preparing metadata (pyproject.toml): started 2026-04-27T13:29:40,426 Running command Preparing metadata (pyproject.toml) 2026-04-27T13:29:40,992 # pysam: Cython 3.2.4 is available - using cythonize if necessary 2026-04-27T13:29:40,992 # pysam: htslib mode is shared 2026-04-27T13:29:40,993 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-04-27T13:29:40,994 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-04-27T13:29:40,995 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2026-04-27T13:29:40,996 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2026-04-27T13:29:41,284 checking for gcc... arm-linux-gnueabihf-gcc 2026-04-27T13:29:41,561 checking whether the C compiler works... yes 2026-04-27T13:29:41,562 checking for C compiler default output file name... a.out 2026-04-27T13:29:41,729 checking for suffix of executables... 2026-04-27T13:29:41,942 checking whether we are cross compiling... no 2026-04-27T13:29:42,056 checking for suffix of object files... o 2026-04-27T13:29:42,133 checking whether the compiler supports GNU C... yes 2026-04-27T13:29:42,208 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-04-27T13:29:42,379 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-04-27T13:29:42,382 checking for ranlib... ranlib 2026-04-27T13:29:42,390 checking for grep that handles long lines and -e... /usr/bin/grep 2026-04-27T13:29:42,465 checking for C compiler warning flags... -Wall 2026-04-27T13:29:42,632 checking for arm-linux-gnueabihf-gcc options needed to detect all undeclared functions... none needed 2026-04-27T13:29:42,720 checking for stdio.h... yes 2026-04-27T13:29:42,861 checking for stdlib.h... yes 2026-04-27T13:29:42,986 checking for string.h... yes 2026-04-27T13:29:43,108 checking for inttypes.h... yes 2026-04-27T13:29:43,231 checking for stdint.h... yes 2026-04-27T13:29:43,354 checking for strings.h... yes 2026-04-27T13:29:43,481 checking for sys/stat.h... yes 2026-04-27T13:29:43,641 checking for sys/types.h... yes 2026-04-27T13:29:43,774 checking for unistd.h... yes 2026-04-27T13:29:43,930 checking for sys/param.h... yes 2026-04-27T13:29:44,107 checking whether _XOPEN_SOURCE is declared... no 2026-04-27T13:29:44,201 checking whether __get_cpuid_max is declared... no 2026-04-27T13:29:44,293 checking whether __cpuid_count is declared... no 2026-04-27T13:29:44,461 checking for x86intrin.h... no 2026-04-27T13:29:44,465 checking for pkg-config... /usr/bin/pkg-config 2026-04-27T13:29:44,469 checking pkg-config is at least version 0.9.0... yes 2026-04-27T13:29:44,654 checking for arm-linux-gnueabihf-gcc option to enable large file support... -D_FILE_OFFSET_BITS=64 2026-04-27T13:29:44,660 checking shared library type for unknown-Linux... plain .so 2026-04-27T13:29:44,775 checking whether the linker supports versioned symbols... no 2026-04-27T13:29:44,947 checking whether the compiler accepts -fvisibility=hidden... yes 2026-04-27T13:29:45,129 checking build system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:45,130 checking host system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:45,351 checking for getpagesize... yes 2026-04-27T13:29:45,688 checking for working mmap... yes 2026-04-27T13:29:45,873 checking for gmtime_r... yes 2026-04-27T13:29:46,088 checking for fsync... yes 2026-04-27T13:29:46,272 checking for drand48... yes 2026-04-27T13:29:46,476 checking for srand48_deterministic... no 2026-04-27T13:29:46,662 checking for getauxval... yes 2026-04-27T13:29:46,891 checking for elf_aux_info... no 2026-04-27T13:29:47,087 checking for posix_memalign... yes 2026-04-27T13:29:47,247 checking whether fdatasync is declared... yes 2026-04-27T13:29:47,430 checking for fdatasync... yes 2026-04-27T13:29:47,610 checking for __attribute__((constructor))... yes 2026-04-27T13:29:47,849 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-04-27T13:29:48,251 checking for library containing log... -lm 2026-04-27T13:29:48,354 checking for zlib.h... yes 2026-04-27T13:29:48,556 checking for inflate in -lz... yes 2026-04-27T13:29:48,746 checking for library containing recv... none required 2026-04-27T13:29:48,832 checking for bzlib.h... yes 2026-04-27T13:29:49,014 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-04-27T13:29:49,213 checking for lzma.h... yes 2026-04-27T13:29:49,435 checking for lzma_easy_buffer_encode in -llzma... yes 2026-04-27T13:29:49,438 checking whether htscodecs files are present... yes 2026-04-27T13:29:49,515 checking for libdeflate.h... yes 2026-04-27T13:29:49,700 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-04-27T13:29:49,848 checking for curl/curl.h... yes 2026-04-27T13:29:50,235 checking for curl_easy_pause in -lcurl... yes 2026-04-27T13:29:50,446 checking for CCHmac... no 2026-04-27T13:29:51,042 checking for library containing HMAC... -lcrypto 2026-04-27T13:29:51,236 checking for library containing regcomp... none required 2026-04-27T13:29:51,305 configure: creating ./config.status 2026-04-27T13:29:51,607 config.status: creating config.mk 2026-04-27T13:29:51,665 config.status: creating htslib.pc.tmp 2026-04-27T13:29:51,729 config.status: creating config.h 2026-04-27T13:29:51,756 config.status: config.h is unchanged 2026-04-27T13:29:51,764 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-04-27T13:29:52,096 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-27T13:29:52,097 !! 2026-04-27T13:29:52,099 ******************************************************************************** 2026-04-27T13:29:52,100 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-27T13:29:52,101 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-27T13:29:52,102 or your builds will no longer be supported. 2026-04-27T13:29:52,103 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-27T13:29:52,104 ******************************************************************************** 2026-04-27T13:29:52,106 !! 2026-04-27T13:29:52,106 corresp(dist, value, root_dir) 2026-04-27T13:29:52,352 # pysam: htslib configure options: --enable-libcurl 2026-04-27T13:29:52,353 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-04-27T13:29:52,353 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-04-27T13:29:52,354 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-04-27T13:29:52,354 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-04-27T13:29:52,355 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-04-27T13:29:52,356 # pysam: htslib_config PLATFORM=default 2026-04-27T13:29:52,357 # pysam: config_option: ENABLE_GCS=1 2026-04-27T13:29:52,357 # pysam: config_option: ENABLE_PLUGINS=0 2026-04-27T13:29:52,358 # pysam: config_option: ENABLE_S3=1 2026-04-27T13:29:52,358 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-04-27T13:29:52,358 # pysam: config_option: HAVE_HMAC=1 2026-04-27T13:29:52,359 # pysam: config_option: HAVE_LIBBZ2=1 2026-04-27T13:29:52,359 # pysam: config_option: HAVE_LIBCURL=1 2026-04-27T13:29:52,360 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-04-27T13:29:52,360 # pysam: config_option: HAVE_LIBLZMA=1 2026-04-27T13:29:52,361 # pysam: config_option: HAVE_MMAP=1 2026-04-27T13:29:52,362 running dist_info 2026-04-27T13:29:52,367 creating /tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info 2026-04-27T13:29:52,368 writing /tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/PKG-INFO 2026-04-27T13:29:52,372 writing dependency_links to /tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/dependency_links.txt 2026-04-27T13:29:52,374 writing top-level names to /tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/top_level.txt 2026-04-27T13:29:52,375 writing manifest file '/tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/SOURCES.txt' 2026-04-27T13:29:52,449 reading manifest file '/tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/SOURCES.txt' 2026-04-27T13:29:52,451 reading manifest template 'MANIFEST.in' 2026-04-27T13:29:52,453 warning: no files found matching 'KNOWN_BUGS' 2026-04-27T13:29:52,454 warning: no files found matching 'THANKS' 2026-04-27T13:29:52,463 no previously-included directories found matching 'tests' 2026-04-27T13:29:52,579 adding license file 'COPYING' 2026-04-27T13:29:52,579 adding license file 'AUTHORS' 2026-04-27T13:29:52,598 writing manifest file '/tmp/pip-modern-metadata-yi9_7rhl/pysam.egg-info/SOURCES.txt' 2026-04-27T13:29:52,600 creating '/tmp/pip-modern-metadata-yi9_7rhl/pysam-0.24.0.dist-info' 2026-04-27T13:29:52,743 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-27T13:29:52,748 Source in /tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 has version 0.24.0, which satisfies requirement pysam==0.24.0 from https://files.pythonhosted.org/packages/09/9b/e856ad525ed0847810cca936ee551b8e0a709525fea34e0e0e723173f62d/pysam-0.24.0.tar.gz 2026-04-27T13:29:52,750 Removed pysam==0.24.0 from https://files.pythonhosted.org/packages/09/9b/e856ad525ed0847810cca936ee551b8e0a709525fea34e0e0e723173f62d/pysam-0.24.0.tar.gz from build tracker '/tmp/pip-build-tracker-3i0vqi4i' 2026-04-27T13:29:52,755 Created temporary directory: /tmp/pip-unpack-eq83x3jq 2026-04-27T13:29:52,756 Building wheels for collected packages: pysam 2026-04-27T13:29:52,761 Created temporary directory: /tmp/pip-wheel-hcb00crk 2026-04-27T13:29:52,761 Destination directory: /tmp/pip-wheel-hcb00crk 2026-04-27T13:29:52,763 Building wheel for pysam (pyproject.toml): started 2026-04-27T13:29:52,765 Running command Building wheel for pysam (pyproject.toml) 2026-04-27T13:29:53,312 # pysam: Cython 3.2.4 is available - using cythonize if necessary 2026-04-27T13:29:53,313 # pysam: htslib mode is shared 2026-04-27T13:29:53,313 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-04-27T13:29:53,314 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-04-27T13:29:53,314 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2026-04-27T13:29:53,315 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2026-04-27T13:29:53,610 checking for gcc... arm-linux-gnueabihf-gcc 2026-04-27T13:29:53,889 checking whether the C compiler works... yes 2026-04-27T13:29:53,890 checking for C compiler default output file name... a.out 2026-04-27T13:29:54,055 checking for suffix of executables... 2026-04-27T13:29:54,266 checking whether we are cross compiling... no 2026-04-27T13:29:54,393 checking for suffix of object files... o 2026-04-27T13:29:54,485 checking whether the compiler supports GNU C... yes 2026-04-27T13:29:54,559 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-04-27T13:29:54,729 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-04-27T13:29:54,733 checking for ranlib... ranlib 2026-04-27T13:29:54,741 checking for grep that handles long lines and -e... /usr/bin/grep 2026-04-27T13:29:54,816 checking for C compiler warning flags... -Wall 2026-04-27T13:29:54,984 checking for arm-linux-gnueabihf-gcc options needed to detect all undeclared functions... none needed 2026-04-27T13:29:55,072 checking for stdio.h... yes 2026-04-27T13:29:55,200 checking for stdlib.h... yes 2026-04-27T13:29:55,334 checking for string.h... yes 2026-04-27T13:29:55,454 checking for inttypes.h... yes 2026-04-27T13:29:55,577 checking for stdint.h... yes 2026-04-27T13:29:55,699 checking for strings.h... yes 2026-04-27T13:29:55,825 checking for sys/stat.h... yes 2026-04-27T13:29:55,949 checking for sys/types.h... yes 2026-04-27T13:29:56,115 checking for unistd.h... yes 2026-04-27T13:29:56,270 checking for sys/param.h... yes 2026-04-27T13:29:56,443 checking whether _XOPEN_SOURCE is declared... no 2026-04-27T13:29:56,532 checking whether __get_cpuid_max is declared... no 2026-04-27T13:29:56,622 checking whether __cpuid_count is declared... no 2026-04-27T13:29:56,757 checking for x86intrin.h... no 2026-04-27T13:29:56,760 checking for pkg-config... /usr/bin/pkg-config 2026-04-27T13:29:56,766 checking pkg-config is at least version 0.9.0... yes 2026-04-27T13:29:56,975 checking for arm-linux-gnueabihf-gcc option to enable large file support... -D_FILE_OFFSET_BITS=64 2026-04-27T13:29:56,981 checking shared library type for unknown-Linux... plain .so 2026-04-27T13:29:57,091 checking whether the linker supports versioned symbols... no 2026-04-27T13:29:57,267 checking whether the compiler accepts -fvisibility=hidden... yes 2026-04-27T13:29:57,455 checking build system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:57,456 checking host system type... armv7l-unknown-linux-gnueabihf 2026-04-27T13:29:57,673 checking for getpagesize... yes 2026-04-27T13:29:58,006 checking for working mmap... yes 2026-04-27T13:29:58,193 checking for gmtime_r... yes 2026-04-27T13:29:58,380 checking for fsync... yes 2026-04-27T13:29:58,569 checking for drand48... yes 2026-04-27T13:29:58,778 checking for srand48_deterministic... no 2026-04-27T13:29:58,962 checking for getauxval... yes 2026-04-27T13:29:59,198 checking for elf_aux_info... no 2026-04-27T13:29:59,394 checking for posix_memalign... yes 2026-04-27T13:29:59,556 checking whether fdatasync is declared... yes 2026-04-27T13:29:59,742 checking for fdatasync... yes 2026-04-27T13:29:59,927 checking for __attribute__((constructor))... yes 2026-04-27T13:30:00,162 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-04-27T13:30:00,570 checking for library containing log... -lm 2026-04-27T13:30:00,672 checking for zlib.h... yes 2026-04-27T13:30:00,876 checking for inflate in -lz... yes 2026-04-27T13:30:01,070 checking for library containing recv... none required 2026-04-27T13:30:01,158 checking for bzlib.h... yes 2026-04-27T13:30:01,340 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-04-27T13:30:01,529 checking for lzma.h... yes 2026-04-27T13:30:01,748 checking for lzma_easy_buffer_encode in -llzma... yes 2026-04-27T13:30:01,751 checking whether htscodecs files are present... yes 2026-04-27T13:30:01,828 checking for libdeflate.h... yes 2026-04-27T13:30:02,014 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-04-27T13:30:02,163 checking for curl/curl.h... yes 2026-04-27T13:30:02,548 checking for curl_easy_pause in -lcurl... yes 2026-04-27T13:30:02,759 checking for CCHmac... no 2026-04-27T13:30:03,355 checking for library containing HMAC... -lcrypto 2026-04-27T13:30:03,550 checking for library containing regcomp... none required 2026-04-27T13:30:03,620 configure: creating ./config.status 2026-04-27T13:30:03,927 config.status: creating config.mk 2026-04-27T13:30:03,983 config.status: creating htslib.pc.tmp 2026-04-27T13:30:04,049 config.status: creating config.h 2026-04-27T13:30:04,079 config.status: config.h is unchanged 2026-04-27T13:30:04,088 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-04-27T13:30:04,424 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-27T13:30:04,425 !! 2026-04-27T13:30:04,427 ******************************************************************************** 2026-04-27T13:30:04,428 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-27T13:30:04,429 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-27T13:30:04,430 or your builds will no longer be supported. 2026-04-27T13:30:04,432 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-27T13:30:04,432 ******************************************************************************** 2026-04-27T13:30:04,434 !! 2026-04-27T13:30:04,435 corresp(dist, value, root_dir) 2026-04-27T13:30:04,659 # pysam: htslib configure options: --enable-libcurl 2026-04-27T13:30:04,659 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-04-27T13:30:04,660 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-04-27T13:30:04,660 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-04-27T13:30:04,661 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-04-27T13:30:04,662 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-04-27T13:30:04,662 # pysam: htslib_config PLATFORM=default 2026-04-27T13:30:04,663 # pysam: config_option: ENABLE_GCS=1 2026-04-27T13:30:04,664 # pysam: config_option: ENABLE_PLUGINS=0 2026-04-27T13:30:04,664 # pysam: config_option: ENABLE_S3=1 2026-04-27T13:30:04,665 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-04-27T13:30:04,665 # pysam: config_option: HAVE_HMAC=1 2026-04-27T13:30:04,666 # pysam: config_option: HAVE_LIBBZ2=1 2026-04-27T13:30:04,666 # pysam: config_option: HAVE_LIBCURL=1 2026-04-27T13:30:04,667 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-04-27T13:30:04,667 # pysam: config_option: HAVE_LIBLZMA=1 2026-04-27T13:30:04,667 # pysam: config_option: HAVE_MMAP=1 2026-04-27T13:30:04,668 running bdist_wheel 2026-04-27T13:30:04,675 running build 2026-04-27T13:30:04,676 running build_py 2026-04-27T13:30:04,683 creating build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,685 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,687 copying pysam/version.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,689 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,691 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,693 copying pysam/config.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,694 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,696 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:04,698 creating build/lib.linux-armv7l-cpython-311/pysam/include 2026-04-27T13:30:04,699 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam/include 2026-04-27T13:30:04,703 running egg_info 2026-04-27T13:30:04,715 writing pysam.egg-info/PKG-INFO 2026-04-27T13:30:04,717 writing dependency_links to pysam.egg-info/dependency_links.txt 2026-04-27T13:30:04,719 writing top-level names to pysam.egg-info/top_level.txt 2026-04-27T13:30:04,781 reading manifest file 'pysam.egg-info/SOURCES.txt' 2026-04-27T13:30:04,841 reading manifest template 'MANIFEST.in' 2026-04-27T13:30:04,843 warning: no files found matching 'KNOWN_BUGS' 2026-04-27T13:30:04,843 warning: no files found matching 'THANKS' 2026-04-27T13:30:04,850 no previously-included directories found matching 'tests' 2026-04-27T13:30:04,961 adding license file 'COPYING' 2026-04-27T13:30:04,961 adding license file 'AUTHORS' 2026-04-27T13:30:04,985 writing manifest file 'pysam.egg-info/SOURCES.txt' 2026-04-27T13:30:04,990 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. 2026-04-27T13:30:04,991 !! 2026-04-27T13:30:04,992 ******************************************************************************** 2026-04-27T13:30:04,993 ############################ 2026-04-27T13:30:04,993 # Package would be ignored # 2026-04-27T13:30:04,994 ############################ 2026-04-27T13:30:04,994 Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], 2026-04-27T13:30:04,995 but it is absent from setuptools' `packages` configuration. 2026-04-27T13:30:04,996 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-27T13:30:04,996 package, please make sure that 'pysam.include.htslib.cram' is explicitly added 2026-04-27T13:30:04,997 to the `packages` configuration field. 2026-04-27T13:30:04,998 Alternatively, you can also rely on setuptools' discovery methods 2026-04-27T13:30:04,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-27T13:30:04,999 instead of `find_packages(...)`/`find:`). 2026-04-27T13:30:05,000 You can read more about "package discovery" on setuptools documentation page: 2026-04-27T13:30:05,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-27T13:30:05,003 If you don't want 'pysam.include.htslib.cram' to be distributed and are 2026-04-27T13:30:05,003 already explicitly excluding 'pysam.include.htslib.cram' via 2026-04-27T13:30:05,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-27T13:30:05,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-27T13:30:05,004 combination with a more fine grained `package-data` configuration. 2026-04-27T13:30:05,005 You can read more about "package data files" on setuptools documentation page: 2026-04-27T13:30:05,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-27T13:30:05,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-27T13:30:05,008 even if it does not contain any `.py` files. 2026-04-27T13:30:05,008 On the other hand, currently there is no concept of package data 2026-04-27T13:30:05,009 directory, all directories are treated like packages. 2026-04-27T13:30:05,009 ******************************************************************************** 2026-04-27T13:30:05,010 !! 2026-04-27T13:30:05,010 check.warn(importable) 2026-04-27T13:30:05,011 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. 2026-04-27T13:30:05,011 !! 2026-04-27T13:30:05,012 ******************************************************************************** 2026-04-27T13:30:05,012 ############################ 2026-04-27T13:30:05,013 # Package would be ignored # 2026-04-27T13:30:05,013 ############################ 2026-04-27T13:30:05,014 Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], 2026-04-27T13:30:05,014 but it is absent from setuptools' `packages` configuration. 2026-04-27T13:30:05,015 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-27T13:30:05,016 package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added 2026-04-27T13:30:05,017 to the `packages` configuration field. 2026-04-27T13:30:05,018 Alternatively, you can also rely on setuptools' discovery methods 2026-04-27T13:30:05,019 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-27T13:30:05,019 instead of `find_packages(...)`/`find:`). 2026-04-27T13:30:05,020 You can read more about "package discovery" on setuptools documentation page: 2026-04-27T13:30:05,021 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-27T13:30:05,022 If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are 2026-04-27T13:30:05,023 already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via 2026-04-27T13:30:05,023 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-27T13:30:05,024 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-27T13:30:05,025 combination with a more fine grained `package-data` configuration. 2026-04-27T13:30:05,026 You can read more about "package data files" on setuptools documentation page: 2026-04-27T13:30:05,027 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-27T13:30:05,028 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-27T13:30:05,029 even if it does not contain any `.py` files. 2026-04-27T13:30:05,030 On the other hand, currently there is no concept of package data 2026-04-27T13:30:05,030 directory, all directories are treated like packages. 2026-04-27T13:30:05,031 ******************************************************************************** 2026-04-27T13:30:05,032 !! 2026-04-27T13:30:05,032 check.warn(importable) 2026-04-27T13:30:05,033 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. 2026-04-27T13:30:05,033 !! 2026-04-27T13:30:05,034 ******************************************************************************** 2026-04-27T13:30:05,034 ############################ 2026-04-27T13:30:05,035 # Package would be ignored # 2026-04-27T13:30:05,035 ############################ 2026-04-27T13:30:05,036 Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], 2026-04-27T13:30:05,036 but it is absent from setuptools' `packages` configuration. 2026-04-27T13:30:05,037 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-27T13:30:05,037 package, please make sure that 'pysam.include.htslib.m4' is explicitly added 2026-04-27T13:30:05,038 to the `packages` configuration field. 2026-04-27T13:30:05,039 Alternatively, you can also rely on setuptools' discovery methods 2026-04-27T13:30:05,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-27T13:30:05,040 instead of `find_packages(...)`/`find:`). 2026-04-27T13:30:05,041 You can read more about "package discovery" on setuptools documentation page: 2026-04-27T13:30:05,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-27T13:30:05,043 If you don't want 'pysam.include.htslib.m4' to be distributed and are 2026-04-27T13:30:05,044 already explicitly excluding 'pysam.include.htslib.m4' via 2026-04-27T13:30:05,044 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-27T13:30:05,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-27T13:30:05,046 combination with a more fine grained `package-data` configuration. 2026-04-27T13:30:05,047 You can read more about "package data files" on setuptools documentation page: 2026-04-27T13:30:05,048 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-27T13:30:05,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-27T13:30:05,051 even if it does not contain any `.py` files. 2026-04-27T13:30:05,052 On the other hand, currently there is no concept of package data 2026-04-27T13:30:05,052 directory, all directories are treated like packages. 2026-04-27T13:30:05,053 ******************************************************************************** 2026-04-27T13:30:05,054 !! 2026-04-27T13:30:05,055 check.warn(importable) 2026-04-27T13:30:05,055 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. 2026-04-27T13:30:05,056 !! 2026-04-27T13:30:05,067 ******************************************************************************** 2026-04-27T13:30:05,083 ############################ 2026-04-27T13:30:05,093 # Package would be ignored # 2026-04-27T13:30:05,094 ############################ 2026-04-27T13:30:05,095 Python recognizes 'pysam.include.htslib.os' as an importable package[^1], 2026-04-27T13:30:05,095 but it is absent from setuptools' `packages` configuration. 2026-04-27T13:30:05,096 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-27T13:30:05,097 package, please make sure that 'pysam.include.htslib.os' is explicitly added 2026-04-27T13:30:05,098 to the `packages` configuration field. 2026-04-27T13:30:05,099 Alternatively, you can also rely on setuptools' discovery methods 2026-04-27T13:30:05,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-27T13:30:05,100 instead of `find_packages(...)`/`find:`). 2026-04-27T13:30:05,101 You can read more about "package discovery" on setuptools documentation page: 2026-04-27T13:30:05,102 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-27T13:30:05,104 If you don't want 'pysam.include.htslib.os' to be distributed and are 2026-04-27T13:30:05,104 already explicitly excluding 'pysam.include.htslib.os' via 2026-04-27T13:30:05,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-27T13:30:05,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-27T13:30:05,110 combination with a more fine grained `package-data` configuration. 2026-04-27T13:30:05,111 You can read more about "package data files" on setuptools documentation page: 2026-04-27T13:30:05,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-27T13:30:05,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-27T13:30:05,113 even if it does not contain any `.py` files. 2026-04-27T13:30:05,114 On the other hand, currently there is no concept of package data 2026-04-27T13:30:05,114 directory, all directories are treated like packages. 2026-04-27T13:30:05,115 ******************************************************************************** 2026-04-27T13:30:05,116 !! 2026-04-27T13:30:05,117 check.warn(importable) 2026-04-27T13:30:05,122 /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. 2026-04-27T13:30:05,130 !! 2026-04-27T13:30:05,145 ******************************************************************************** 2026-04-27T13:30:05,146 ############################ 2026-04-27T13:30:05,147 # Package would be ignored # 2026-04-27T13:30:05,147 ############################ 2026-04-27T13:30:05,148 Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], 2026-04-27T13:30:05,148 but it is absent from setuptools' `packages` configuration. 2026-04-27T13:30:05,150 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-27T13:30:05,150 package, please make sure that 'pysam.include.samtools.lz4' is explicitly added 2026-04-27T13:30:05,151 to the `packages` configuration field. 2026-04-27T13:30:05,152 Alternatively, you can also rely on setuptools' discovery methods 2026-04-27T13:30:05,153 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-27T13:30:05,154 instead of `find_packages(...)`/`find:`). 2026-04-27T13:30:05,157 You can read more about "package discovery" on setuptools documentation page: 2026-04-27T13:30:05,157 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-27T13:30:05,158 If you don't want 'pysam.include.samtools.lz4' to be distributed and are 2026-04-27T13:30:05,159 already explicitly excluding 'pysam.include.samtools.lz4' via 2026-04-27T13:30:05,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-27T13:30:05,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-27T13:30:05,161 combination with a more fine grained `package-data` configuration. 2026-04-27T13:30:05,162 You can read more about "package data files" on setuptools documentation page: 2026-04-27T13:30:05,164 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-27T13:30:05,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-27T13:30:05,165 even if it does not contain any `.py` files. 2026-04-27T13:30:05,166 On the other hand, currently there is no concept of package data 2026-04-27T13:30:05,166 directory, all directories are treated like packages. 2026-04-27T13:30:05,167 ******************************************************************************** 2026-04-27T13:30:05,168 !! 2026-04-27T13:30:05,168 check.warn(importable) 2026-04-27T13:30:05,168 copying pysam/conftest_cstd.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,169 copying pysam/htslib_util.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,169 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,170 copying pysam/libcalignedsegment.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,170 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,171 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,171 copying pysam/libcalignedsegment.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,172 copying pysam/libcalignmentfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,172 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,173 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,173 copying pysam/libcalignmentfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,174 copying pysam/libcbcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,234 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,236 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,239 copying pysam/libcbcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,244 copying pysam/libcbcftools.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,251 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,253 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,255 copying pysam/libcbcftools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,257 copying pysam/libcbgzf.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,270 copying pysam/libcbgzf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,272 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,274 copying pysam/libcbgzf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,277 copying pysam/libcfaidx.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,297 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,299 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,301 copying pysam/libcfaidx.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,304 copying pysam/libchtslib.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,326 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,330 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,332 copying pysam/libchtslib.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,336 copying pysam/libcsamfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,346 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,349 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,351 copying pysam/libcsamfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,354 copying pysam/libcsamtools.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,360 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,363 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,365 copying pysam/libcsamtools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,367 copying pysam/libctabix.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,401 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,404 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,406 copying pysam/libctabix.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,409 copying pysam/libctabixproxies.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,439 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,441 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,443 copying pysam/libctabixproxies.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,446 copying pysam/libcutils.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,470 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,472 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,474 copying pysam/libcutils.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,477 copying pysam/libcvcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,510 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,512 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,514 copying pysam/libcvcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,517 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,519 copying pysam/version.h -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,521 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:05,523 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,524 copying samtools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,526 copying samtools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,529 copying samtools/amplicon_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,533 copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,537 copying samtools/bam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,540 copying samtools/bam.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,543 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,545 copying samtools/bam2depth.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,548 copying samtools/bam2depth.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,551 copying samtools/bam_addrprg.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,554 copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,557 copying samtools/bam_ampliconclip.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,561 copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,564 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,566 copying samtools/bam_aux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,568 copying samtools/bam_aux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,571 copying samtools/bam_cat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,574 copying samtools/bam_cat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,577 copying samtools/bam_checksum.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,580 copying samtools/bam_checksum.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,584 copying samtools/bam_color.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,586 copying samtools/bam_color.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,588 copying samtools/bam_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,593 copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,598 copying samtools/bam_consensus_tab.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,601 copying samtools/bam_fastq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,604 copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,607 copying samtools/bam_flags.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,609 copying samtools/bam_flags.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,611 copying samtools/bam_import.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,614 copying samtools/bam_import.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,617 copying samtools/bam_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,619 copying samtools/bam_index.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,622 copying samtools/bam_lpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,625 copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,627 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,629 copying samtools/bam_markdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,633 copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,637 copying samtools/bam_mate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,640 copying samtools/bam_mate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,644 copying samtools/bam_md.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,646 copying samtools/bam_md.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,649 copying samtools/bam_plbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,651 copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,654 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,656 copying samtools/bam_plcmd.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,660 copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,663 copying samtools/bam_quickcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,666 copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,669 copying samtools/bam_reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,672 copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,674 copying samtools/bam_rmdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,677 copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,679 copying samtools/bam_rmdupse.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,682 copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,684 copying samtools/bam_samples.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,687 copying samtools/bam_samples.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,689 copying samtools/bam_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,694 copying samtools/bam_sort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,698 copying samtools/bam_split.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,702 copying samtools/bam_split.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,704 copying samtools/bam_stat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,707 copying samtools/bam_stat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,710 copying samtools/bamshuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,713 copying samtools/bamshuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,716 copying samtools/bamtk.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,719 copying samtools/bamtk.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,722 copying samtools/bedcov.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,724 copying samtools/bedcov.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,727 copying samtools/bedidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,730 copying samtools/bedidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,733 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,736 copying samtools/consensus_pileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,738 copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,741 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,744 copying samtools/coverage.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,747 copying samtools/coverage.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,751 copying samtools/cram_size.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,754 copying samtools/cram_size.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,757 copying samtools/cut_target.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,760 copying samtools/cut_target.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,763 copying samtools/dict.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,766 copying samtools/dict.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,769 copying samtools/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,772 copying samtools/faidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,775 copying samtools/padding.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,778 copying samtools/padding.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,782 copying samtools/phase.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,785 copying samtools/phase.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,788 copying samtools/reference.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,791 copying samtools/reference.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,794 copying samtools/reset.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,797 copying samtools/reset.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,801 copying samtools/sam_opts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,804 copying samtools/sam_opts.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,806 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,809 copying samtools/sam_utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,812 copying samtools/sam_utils.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,815 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,817 copying samtools/sam_view.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,821 copying samtools/sam_view.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,824 copying samtools/sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,827 copying samtools/sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,829 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,831 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,833 copying samtools/samtools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,835 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,838 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,840 copying samtools/stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,845 copying samtools/stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,850 copying samtools/stats_isize.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,852 copying samtools/stats_isize.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,855 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,857 copying samtools/tmp_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,860 copying samtools/tmp_file.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,863 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,866 copying samtools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,868 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2026-04-27T13:30:05,870 copying samtools/lz4/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2026-04-27T13:30:05,873 copying samtools/lz4/lz4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2026-04-27T13:30:05,877 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2026-04-27T13:30:05,881 copying samtools/lz4/lz4.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2026-04-27T13:30:05,885 copying samtools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-04-27T13:30:05,887 creating build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,888 copying bcftools/HMM.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,892 copying bcftools/HMM.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,896 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,898 copying bcftools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,903 copying bcftools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,906 copying bcftools/abuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,910 copying bcftools/abuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,914 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,917 copying bcftools/bam2bcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,922 copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,927 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,930 copying bcftools/bam2bcf_edlib.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,935 copying bcftools/bam2bcf_edlib.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,940 copying bcftools/bam2bcf_iaux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,944 copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,948 copying bcftools/bam2bcf_indel.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,952 copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,956 copying bcftools/bam_sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,960 copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,963 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,965 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,968 copying bcftools/bcftools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,970 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,972 copying bcftools/bin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,975 copying bcftools/bin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,977 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,979 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,982 copying bcftools/ccall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,985 copying bcftools/ccall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,988 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,990 copying bcftools/cols.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,993 copying bcftools/cols.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,995 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:05,997 copying bcftools/consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,000 copying bcftools/consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,004 copying bcftools/convert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,007 copying bcftools/convert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,011 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,013 copying bcftools/csq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,018 copying bcftools/csq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,024 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,027 copying bcftools/dist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,029 copying bcftools/dist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,031 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,033 copying bcftools/edlib.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,036 copying bcftools/edlib.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,039 copying bcftools/edlib.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,042 copying bcftools/em.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,044 copying bcftools/em.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,047 copying bcftools/extsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,049 copying bcftools/extsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,051 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,054 copying bcftools/filter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,059 copying bcftools/filter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,065 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,067 copying bcftools/gff.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,071 copying bcftools/gff.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,074 copying bcftools/gff.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,077 copying bcftools/gvcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,080 copying bcftools/gvcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,082 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,084 copying bcftools/hclust.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,087 copying bcftools/hclust.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,090 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,092 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,094 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,096 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,099 copying bcftools/kmin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,101 copying bcftools/kmin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,103 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,105 copying bcftools/main.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,108 copying bcftools/main.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,110 copying bcftools/mcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,114 copying bcftools/mcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,117 copying bcftools/mpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,122 copying bcftools/mpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,126 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,129 copying bcftools/ploidy.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,132 copying bcftools/ploidy.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,134 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,137 copying bcftools/prob1.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,139 copying bcftools/prob1.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,142 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,144 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,147 copying bcftools/read_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,150 copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,153 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,155 copying bcftools/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,158 copying bcftools/regidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,161 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,164 copying bcftools/reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,167 copying bcftools/reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,170 copying bcftools/smpl_ilist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,172 copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,175 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,177 copying bcftools/str_finder.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,180 copying bcftools/str_finder.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,183 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,185 copying bcftools/tabix.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,188 copying bcftools/tabix.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,190 copying bcftools/tsv2vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,192 copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,194 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,197 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,200 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,203 copying bcftools/vcfannotate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,208 copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,213 copying bcftools/vcfbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,215 copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,219 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,221 copying bcftools/vcfcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,225 copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,228 copying bcftools/vcfcnv.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,232 copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,236 copying bcftools/vcfconcat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,239 copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,243 copying bcftools/vcfconvert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,246 copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,250 copying bcftools/vcffilter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,253 copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,256 copying bcftools/vcfgtcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,260 copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,264 copying bcftools/vcfhead.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,267 copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,269 copying bcftools/vcfindex.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,272 copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,275 copying bcftools/vcfisec.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,278 copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,281 copying bcftools/vcfmerge.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,286 copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,291 copying bcftools/vcfnorm.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,295 copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,300 copying bcftools/vcfplugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,303 copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,306 copying bcftools/vcfquery.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,309 copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,312 copying bcftools/vcfroh.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,316 copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,319 copying bcftools/vcfsom.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,323 copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,326 copying bcftools/vcfsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,329 copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,333 copying bcftools/vcfstats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,338 copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,342 copying bcftools/vcfview.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,345 copying bcftools/vcfview.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,349 copying bcftools/vcmp.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,351 copying bcftools/vcmp.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,354 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,357 copying bcftools/version.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,360 copying bcftools/version.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,363 copying bcftools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,365 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-04-27T13:30:06,367 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,369 copying htslib/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,371 copying htslib/Makefile -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,375 copying htslib/README -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,378 copying htslib/bcf_sr_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,381 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,383 copying htslib/bgzf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,388 copying htslib/bgzf_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,390 copying htslib/builddir_vars.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,393 copying htslib/config.guess -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,397 copying htslib/config.h.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,400 copying htslib/config.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,403 copying htslib/config.sub -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,406 copying htslib/configure -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,415 copying htslib/configure.ac -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,418 copying htslib/errmod.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,421 copying htslib/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,425 copying htslib/fuzz_settings.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,427 copying htslib/header.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,432 copying htslib/header.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,435 copying htslib/hfile.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,438 copying htslib/hfile_gcs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,441 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,444 copying htslib/hfile_libcurl.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,448 copying htslib/hfile_s3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,452 copying htslib/hts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,457 copying htslib/hts_expr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,461 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,463 copying htslib/hts_os.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,466 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,469 copying htslib/htscodecs_bundled.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,471 copying htslib/htscodecs_external.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,473 copying htslib/htslib.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,476 copying htslib/htslib.pc.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,478 copying htslib/htslib_vars.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,481 copying htslib/kfunc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,484 copying htslib/kstring.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,487 copying htslib/md5.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,490 copying htslib/multipart.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,492 copying htslib/plugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,495 copying htslib/probaln.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,498 copying htslib/realn.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,501 copying htslib/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,504 copying htslib/region.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,507 copying htslib/sam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,513 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,515 copying htslib/sam_mods.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,519 copying htslib/simd.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,521 copying htslib/synced_bcf_reader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,525 copying htslib/tbx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,528 copying htslib/textutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,531 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,534 copying htslib/thread_pool.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,537 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,539 copying htslib/vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,549 copying htslib/vcf_sweep.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,551 copying htslib/vcfutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,555 copying htslib/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,557 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,558 copying htslib/cram/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,560 copying htslib/cram/cram_codecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,564 copying htslib/cram/cram_codecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,567 copying htslib/cram/cram_decode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,572 copying htslib/cram/cram_decode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,574 copying htslib/cram/cram_encode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,579 copying htslib/cram/cram_encode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,581 copying htslib/cram/cram_external.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,584 copying htslib/cram/cram_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,587 copying htslib/cram/cram_index.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,589 copying htslib/cram/cram_io.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,594 copying htslib/cram/cram_io.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,597 copying htslib/cram/cram_samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,599 copying htslib/cram/cram_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,601 copying htslib/cram/cram_stats.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,603 copying htslib/cram/cram_structs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,607 copying htslib/cram/mFILE.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,610 copying htslib/cram/mFILE.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,612 copying htslib/cram/misc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,614 copying htslib/cram/open_trace_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,617 copying htslib/cram/open_trace_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,621 copying htslib/cram/os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,623 copying htslib/cram/pooled_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,626 copying htslib/cram/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,628 copying htslib/cram/string_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,630 copying htslib/cram/string_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2026-04-27T13:30:06,633 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,634 copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,638 copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,640 copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,642 copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,645 copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,648 copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,650 copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,652 copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,654 copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,657 copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,659 copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,661 copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,664 copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,666 copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,670 copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,673 copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,676 copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,679 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,683 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,686 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,690 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,694 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,698 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,703 copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,706 copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,710 copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,713 copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,716 copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,719 copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,724 copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,726 copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,729 copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,732 copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,735 copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,739 copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:30:06,741 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2026-04-27T13:30:06,742 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2026-04-27T13:30:06,745 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2026-04-27T13:30:06,748 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2026-04-27T13:30:06,751 copying htslib/m4/pkg.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2026-04-27T13:30:06,754 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2026-04-27T13:30:06,755 copying htslib/os/lzma_stub.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2026-04-27T13:30:06,758 copying htslib/os/rand.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2026-04-27T13:30:06,760 copying htslib/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-04-27T13:30:06,763 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,764 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,768 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,770 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,773 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,776 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,779 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,782 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,784 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,787 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,789 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,791 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,793 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,795 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,798 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,800 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,802 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,805 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,807 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,809 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,811 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,814 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,816 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,820 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,823 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,825 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,828 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,831 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,833 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-04-27T13:30:06,840 running build_ext 2026-04-27T13:30:06,846 checking for arm-linux-gnueabihf-gcc option to enable C99 features... 2026-04-27T13:30:06,846 creating build/temp.linux-armv7l-cpython-311/pysam 2026-04-27T13:30:06,848 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pysam/conftest_cstd.c -o build/temp.linux-armv7l-cpython-311/pysam/conftest_cstd.o 2026-04-27T13:30:06,957 arm-linux-gnueabihf-gcc option to enable C99 features: none needed 2026-04-27T13:30:06,957 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2026-04-27T13:30:06,958 building 'libhts.a' 2026-04-27T13:30:06,986 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2026-04-27T13:30:07,440 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2026-04-27T13:30:08,392 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2026-04-27T13:30:11,030 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2026-04-27T13:30:14,316 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2026-04-27T13:30:15,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2026-04-27T13:30:17,147 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2026-04-27T13:30:22,484 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2026-04-27T13:30:24,203 echo '#define HTS_VERSION_TEXT "1.23.1"' > version.h 2026-04-27T13:30:24,210 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2026-04-27T13:30:33,569 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2026-04-27T13:30:35,532 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2026-04-27T13:30:35,634 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2026-04-27T13:30:36,270 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2026-04-27T13:30:36,827 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2026-04-27T13:30:37,559 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2026-04-27T13:30:38,502 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2026-04-27T13:30:40,033 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2026-04-27T13:30:40,711 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2026-04-27T13:30:54,961 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c 2026-04-27T13:30:56,110 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o simd.o simd.c 2026-04-27T13:30:56,271 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2026-04-27T13:30:59,116 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2026-04-27T13:30:59,463 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2026-04-27T13:31:00,639 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2026-04-27T13:31:01,624 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes 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-fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2026-04-27T13:32:04,838 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2026-04-27T13:32:04,905 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2026-04-27T13:32:05,723 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2026-04-27T13:32:10,687 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2026-04-27T13:32:10,745 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2026-04-27T13:32:10,800 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2026-04-27T13:32:10,857 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c 2026-04-27T13:32:10,915 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong 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arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2026-04-27T13:32:19,749 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2026-04-27T13:32:20,018 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2026-04-27T13:32:22,550 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2026-04-27T13:32:23,046 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2026-04-27T13:32:27,722 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-04-27T13:32:28,081 ranlib libhts.a 2026-04-27T13:32:34,076 Compiling pysam/libchtslib.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-04-27T13:32:34,076 [1/1] Cythonizing pysam/libchtslib.pyx 2026-04-27T13:32:34,077 building 'pysam.libchtslib' extension 2026-04-27T13:32:34,078 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:32:34,387 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:32:51,801 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/simd.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:32:52,422 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2026-04-27T13:32:52,428 building 'pysam.libcsamtools' extension 2026-04-27T13:32:52,432 creating build/temp.linux-armv7l-cpython-311/samtools 2026-04-27T13:32:52,436 creating build/temp.linux-armv7l-cpython-311/samtools/lz4 2026-04-27T13:32:52,438 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:32:54,513 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:32:58,691 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:32:59,271 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:01,915 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:02,676 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:04,999 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:05,223 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:06,477 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_checksum.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_checksum.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:08,545 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:08,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:12,896 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:15,308 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:15,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:16,685 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:17,161 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:17,781 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:23,057 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:25,420 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:26,528 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:26,740 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:29,448 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:29,808 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:30,625 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:32,130 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:33,366 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:34,234 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:44,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:46,663 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:47,474 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:49,757 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:50,268 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:51,350 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:53,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:53,825 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:55,042 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:56,138 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:56,812 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:57,875 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:33:58,818 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:05,065 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:06,409 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:09,615 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:10,584 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:11,713 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:12,030 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:12,549 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:15,898 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:16,719 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:16,927 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:22,666 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:23,316 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:23,793 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_checksum.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:34:24,220 building 'pysam.libcbcftools' extension 2026-04-27T13:34:24,225 creating build/temp.linux-armv7l-cpython-311/bcftools 2026-04-27T13:34:24,232 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:25,359 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:28,204 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:30,861 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:33,995 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:35,663 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:38,114 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:40,064 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:40,267 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:40,603 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:41,329 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:41,559 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:44,362 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:51,176 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:58,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:34:59,212 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:00,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:00,739 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:01,284 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:16,580 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/gff.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:19,712 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:20,331 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:20,971 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:21,412 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:21,746 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:25,683 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:28,571 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:29,674 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:31,294 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:33,245 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:34,761 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:37,919 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:38,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:39,244 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:39,613 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:40,039 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:50,542 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:52,904 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:55,807 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:35:57,951 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:00,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:04,701 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:06,331 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:09,528 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:09,936 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:10,602 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:12,499 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:15,322 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2026-04-27T13:36:15,323 bcftools/vcfmerge.c.pysam.c:869:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2026-04-27T13:36:15,323 869 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2026-04-27T13:36:15,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-04-27T13:36:15,325 In file included from /tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib/htslib/kstring.h:30, 2026-04-27T13:36:15,326 from /tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib/htslib/hts.h:37, 2026-04-27T13:36:15,327 from /tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib/htslib/vcf.h:39, 2026-04-27T13:36:15,327 from bcftools/vcfmerge.c.pysam.c:35: 2026-04-27T13:36:15,328 /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 2026-04-27T13:36:15,328 556 | extern void *calloc (size_t __nmemb, size_t __size) 2026-04-27T13:36:15,329 | ^~~~~~ 2026-04-27T13:36:25,639 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:35,650 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:35,945 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:37,266 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:39,937 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:41,527 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:42,957 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:47,895 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:50,034 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:50,484 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:50,925 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:36:53,001 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/edlib.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:36:56,859 Compiling pysam/libcutils.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-04-27T13:36:56,860 [1/1] Cythonizing pysam/libcutils.pyx 2026-04-27T13:36:56,860 building 'pysam.libcutils' extension 2026-04-27T13:36:56,861 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:37:21,388 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcsamtools.cpython-311-arm-linux-gnueabihf -lcbcftools.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:37:26,213 Compiling pysam/libcalignmentfile.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:37:26,214 [1/1] Cythonizing pysam/libcalignmentfile.pyx 2026-04-27T13:37:26,214 building 'pysam.libcalignmentfile' extension 2026-04-27T13:37:26,215 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:38:12,515 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:38:14,750 Compiling pysam/libcsamfile.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:38:14,750 [1/1] Cythonizing pysam/libcsamfile.pyx 2026-04-27T13:38:14,751 building 'pysam.libcsamfile' extension 2026-04-27T13:38:14,751 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:38:19,027 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:38:26,054 Compiling pysam/libcalignedsegment.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:38:26,055 [1/1] Cythonizing pysam/libcalignedsegment.pyx 2026-04-27T13:38:26,056 building 'pysam.libcalignedsegment' extension 2026-04-27T13:38:26,056 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:39:19,904 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:39:23,748 Compiling pysam/libctabix.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-04-27T13:39:23,750 [1/1] Cythonizing pysam/libctabix.pyx 2026-04-27T13:39:23,750 building 'pysam.libctabix' extension 2026-04-27T13:39:23,751 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:39:48,500 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:39:51,187 Compiling pysam/libcfaidx.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:39:51,188 [1/1] Cythonizing pysam/libcfaidx.pyx 2026-04-27T13:39:51,188 building 'pysam.libcfaidx' extension 2026-04-27T13:39:51,189 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:40:05,971 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:40:13,947 Compiling pysam/libcbcf.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:40:13,947 [1/1] Cythonizing pysam/libcbcf.pyx 2026-04-27T13:40:13,948 building 'pysam.libcbcf' extension 2026-04-27T13:40:13,948 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:41:36,746 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:41:39,549 Compiling pysam/libcbgzf.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:41:39,551 [1/1] Cythonizing pysam/libcbgzf.pyx 2026-04-27T13:41:39,552 building 'pysam.libcbgzf' extension 2026-04-27T13:41:39,552 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:41:47,195 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:41:49,205 Compiling pysam/libctabixproxies.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2026-04-27T13:41:49,206 [1/1] Cythonizing pysam/libctabixproxies.pyx 2026-04-27T13:41:49,207 building 'pysam.libctabixproxies' extension 2026-04-27T13:41:49,207 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:42:14,316 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:42:15,427 warning: pysam/libcvcf.pyx:1084:27: Unreachable code 2026-04-27T13:42:18,533 Compiling pysam/libcvcf.pyx because it depends on /tmp/pip-build-env-b0d6vj5c/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-04-27T13:42:18,534 [1/1] Cythonizing pysam/libcvcf.pyx 2026-04-27T13:42:18,534 building 'pysam.libcvcf' extension 2026-04-27T13:42:18,535 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/htslib -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/samtools/lz4 -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/bcftools -I/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-04-27T13:43:03,071 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2026-04-27T13:43:03,096 pysam/libcvcf.c:24997:15: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 2026-04-27T13:43:03,097 24997 | __pyx_t_2 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 874, __pyx_L1_error) 2026-04-27T13:43:03,098 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-04-27T13:43:03,117 pysam/libcvcf.c:20677:10: note: ‘__pyx_v_qual’ was declared here 2026-04-27T13:43:03,118 20677 | double __pyx_v_qual; 2026-04-27T13:43:03,118 | ^~~~~~~~~~~~ 2026-04-27T13:43:18,855 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174/pysam -L/tmp/pip-wheel-cut5j4d3/pysam_a7e76cd3136344d1bbeba13d998ec174 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-04-27T13:43:20,078 installing to build/bdist.linux-armv7l/wheel 2026-04-27T13:43:20,078 running install 2026-04-27T13:43:20,104 running install_lib 2026-04-27T13:43:20,112 creating build/bdist.linux-armv7l/wheel 2026-04-27T13:43:20,116 creating build/bdist.linux-armv7l/wheel/pysam 2026-04-27T13:43:20,118 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,156 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,241 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,255 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,335 copying build/lib.linux-armv7l-cpython-311/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,337 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,388 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,390 copying build/lib.linux-armv7l-cpython-311/pysam/version.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,393 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,407 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,410 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,412 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,451 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,463 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,483 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,487 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,490 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,510 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,513 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,515 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,566 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,569 copying build/lib.linux-armv7l-cpython-311/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,570 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,572 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,574 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,575 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,577 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:20,579 creating build/bdist.linux-armv7l/wheel/pysam/include 2026-04-27T13:43:20,585 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2026-04-27T13:43:20,586 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,588 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,592 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,594 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,597 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,598 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,603 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,605 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,607 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,610 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,612 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,614 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,619 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,622 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,624 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,627 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,629 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,631 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,636 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,639 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,641 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,643 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,647 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,650 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,653 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,656 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,658 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,661 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,663 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,665 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,667 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,669 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/edlib.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,672 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.sh -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,674 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,677 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,679 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,682 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,684 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,686 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,689 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_edlib.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,693 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,696 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,698 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,701 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,704 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,706 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,709 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/README -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,711 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,713 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,716 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,719 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,721 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,725 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,728 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,732 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,734 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,737 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/edlib.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,740 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,742 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,746 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,749 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,751 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,754 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,757 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,760 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,763 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,767 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,770 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,774 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,776 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,781 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,784 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,787 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,789 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,792 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,795 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,802 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,810 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,814 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,817 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,820 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,822 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,827 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,830 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,833 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,837 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,841 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,844 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,849 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,853 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,856 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,859 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,862 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,865 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,867 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,872 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/edlib.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,875 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,877 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,879 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,882 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,884 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,887 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,888 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,893 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,895 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,898 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,901 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,903 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,904 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,907 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,909 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,912 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,914 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,918 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,921 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,924 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,926 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,931 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,934 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,936 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,938 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,940 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,943 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,945 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,947 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,949 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,952 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,954 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,957 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,960 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,963 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,965 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,967 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,969 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,972 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,974 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,977 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,980 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,983 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,987 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,991 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,994 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,996 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:20,998 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,000 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,003 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,006 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,008 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,010 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,013 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,017 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,020 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,024 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/LICENSE -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-04-27T13:43:21,029 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2026-04-27T13:43:21,030 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,034 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,036 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,039 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,041 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,044 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,046 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,048 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,051 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,053 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,055 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus_tab.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,057 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,060 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,063 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,068 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,070 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,074 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,076 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,079 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2026-04-27T13:43:21,080 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools/lz4 2026-04-27T13:43:21,084 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools/lz4 2026-04-27T13:43:21,086 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools/lz4 2026-04-27T13:43:21,089 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools/lz4 2026-04-27T13:43:21,091 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,094 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,097 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,100 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,103 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,105 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,107 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/version.sh -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,108 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,111 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,113 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,115 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,119 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,121 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,125 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,127 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,129 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,133 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,135 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,137 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,139 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,142 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,144 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,146 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,148 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,150 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,152 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,154 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,156 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/README -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,158 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,160 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,162 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,165 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,168 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,171 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,173 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,175 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_checksum.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,178 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,181 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,184 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,186 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,189 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,191 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,194 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,197 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,200 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,202 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,205 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,207 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,209 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,211 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,213 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,215 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,218 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,220 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,222 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,227 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,230 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,232 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,235 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,238 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,240 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,243 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,247 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,250 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,253 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,255 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,257 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,260 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,262 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,265 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,269 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,271 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,276 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,278 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,281 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,283 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,286 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,289 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,291 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,294 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,297 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,299 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,300 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,302 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,305 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,310 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,313 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,315 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,317 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_checksum.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,320 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,323 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,325 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,328 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,330 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,332 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,335 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,337 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,340 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,343 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,347 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/LICENSE -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-04-27T13:43:21,351 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2026-04-27T13:43:21,352 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,355 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/simd.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,358 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2026-04-27T13:43:21,359 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/rand.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/os 2026-04-27T13:43:21,361 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/os 2026-04-27T13:43:21,363 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,369 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,371 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kfunc.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,373 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,377 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,380 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.mk.in -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,382 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,384 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/version.sh -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,386 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,389 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_os.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,391 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure.ac -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,394 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/tbx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,396 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/plugin.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,399 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/Makefile -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,402 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,404 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/README -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,406 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,408 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.mk -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,410 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,412 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,415 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,417 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,419 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,421 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,423 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,426 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/probaln.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,428 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,430 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_mods.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,433 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/multipart.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,435 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,438 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,441 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/md5.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,443 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,446 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/realn.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,448 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/fuzz_settings.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,450 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h.in -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,452 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzf_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,454 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,458 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,461 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.guess -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,464 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,466 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,472 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,480 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2026-04-27T13:43:21,481 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,484 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,490 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,492 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,497 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,500 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,502 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/os.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,504 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,509 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,512 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,514 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,516 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,518 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,520 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/misc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,522 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,524 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,526 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,528 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,530 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,532 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,534 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,540 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,542 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,544 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,547 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,549 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/cram 2026-04-27T13:43:21,551 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs 2026-04-27T13:43:21,554 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,555 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,560 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,563 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,565 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,570 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,572 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,576 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,579 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,582 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,585 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,588 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,591 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,594 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,596 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,599 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,602 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,604 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,606 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,609 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,611 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,614 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,616 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,619 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,622 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,624 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,627 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,629 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,632 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,635 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,637 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,641 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,644 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,646 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,649 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,652 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htscodecs/htscodecs 2026-04-27T13:43:21,654 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzf.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,658 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_expr.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,662 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2026-04-27T13:43:21,663 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/m4 2026-04-27T13:43:21,666 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/m4 2026-04-27T13:43:21,667 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/m4 2026-04-27T13:43:21,670 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/m4 2026-04-27T13:43:21,673 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/errmod.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,676 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2026-04-27T13:43:21,677 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,679 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,681 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,684 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,687 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,690 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,693 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,696 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,699 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,702 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,705 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,708 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,711 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,714 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,717 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,722 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,725 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,727 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,730 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,733 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,736 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,739 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,742 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,744 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,749 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,751 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,757 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,760 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-04-27T13:43:21,762 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/faidx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,766 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.sub -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,770 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kstring.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,773 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcfutils.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,777 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/regidx.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,780 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/region.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,783 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,789 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils.c -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,791 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,794 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/LICENSE -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-04-27T13:43:21,795 copying build/lib.linux-armv7l-cpython-311/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/./pysam/include 2026-04-27T13:43:21,797 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,800 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,803 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,804 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,806 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,808 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,842 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,845 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,847 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,849 copying build/lib.linux-armv7l-cpython-311/pysam/py.typed -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,850 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,855 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,858 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,860 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,898 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,900 copying build/lib.linux-armv7l-cpython-311/pysam/utils.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,902 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,971 copying build/lib.linux-armv7l-cpython-311/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,973 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,975 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:21,977 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,019 copying build/lib.linux-armv7l-cpython-311/pysam/config.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,022 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,046 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,048 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,050 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,068 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,070 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,076 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,101 copying build/lib.linux-armv7l-cpython-311/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,103 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,114 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,116 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,118 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,120 copying build/lib.linux-armv7l-cpython-311/pysam/version.h -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,121 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,123 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,142 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,143 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,183 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,184 copying build/lib.linux-armv7l-cpython-311/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,186 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyx -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,190 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,192 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,194 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,196 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,201 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,223 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,229 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,231 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,306 copying build/lib.linux-armv7l-cpython-311/pysam/conftest_cstd.c -> build/bdist.linux-armv7l/wheel/./pysam 2026-04-27T13:43:22,308 running install_egg_info 2026-04-27T13:43:22,314 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/./pysam-0.24.0-py3.11.egg-info 2026-04-27T13:43:22,324 running install_scripts 2026-04-27T13:43:22,376 creating build/bdist.linux-armv7l/wheel/pysam-0.24.0.dist-info/WHEEL 2026-04-27T13:43:22,380 creating '/tmp/pip-wheel-hcb00crk/.tmp-xxzpp_xg/pysam-0.24.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-27T13:43:22,384 adding 'pysam/Pileup.py' 2026-04-27T13:43:22,385 adding 'pysam/__init__.py' 2026-04-27T13:43:22,386 adding 'pysam/bcftools.py' 2026-04-27T13:43:22,388 adding 'pysam/config.py' 2026-04-27T13:43:22,389 adding 'pysam/conftest_cstd.c' 2026-04-27T13:43:22,391 adding 'pysam/htslib_util.c' 2026-04-27T13:43:22,392 adding 'pysam/htslib_util.h' 2026-04-27T13:43:22,628 adding 'pysam/libcalignedsegment.c' 2026-04-27T13:43:23,162 adding 'pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:23,179 adding 'pysam/libcalignedsegment.pxd' 2026-04-27T13:43:23,180 adding 'pysam/libcalignedsegment.pyi' 2026-04-27T13:43:23,193 adding 'pysam/libcalignedsegment.pyx' 2026-04-27T13:43:23,387 adding 'pysam/libcalignmentfile.c' 2026-04-27T13:43:23,841 adding 'pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:23,855 adding 'pysam/libcalignmentfile.pxd' 2026-04-27T13:43:23,857 adding 'pysam/libcalignmentfile.pyi' 2026-04-27T13:43:23,868 adding 'pysam/libcalignmentfile.pyx' 2026-04-27T13:43:24,181 adding 'pysam/libcbcf.c' 2026-04-27T13:43:24,953 adding 'pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:24,978 adding 'pysam/libcbcf.pxd' 2026-04-27T13:43:24,980 adding 'pysam/libcbcf.pyi' 2026-04-27T13:43:24,996 adding 'pysam/libcbcf.pyx' 2026-04-27T13:43:25,023 adding 'pysam/libcbcftools.c' 2026-04-27T13:43:25,946 adding 'pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:25,972 adding 'pysam/libcbcftools.pxd' 2026-04-27T13:43:25,973 adding 'pysam/libcbcftools.pyi' 2026-04-27T13:43:25,974 adding 'pysam/libcbcftools.pyx' 2026-04-27T13:43:26,027 adding 'pysam/libcbgzf.c' 2026-04-27T13:43:26,120 adding 'pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:26,124 adding 'pysam/libcbgzf.pxd' 2026-04-27T13:43:26,125 adding 'pysam/libcbgzf.pyi' 2026-04-27T13:43:26,127 adding 'pysam/libcbgzf.pyx' 2026-04-27T13:43:26,209 adding 'pysam/libcfaidx.c' 2026-04-27T13:43:26,379 adding 'pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:26,385 adding 'pysam/libcfaidx.pxd' 2026-04-27T13:43:26,387 adding 'pysam/libcfaidx.pyi' 2026-04-27T13:43:26,390 adding 'pysam/libcfaidx.pyx' 2026-04-27T13:43:26,481 adding 'pysam/libchtslib.c' 2026-04-27T13:43:27,624 adding 'pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:27,662 adding 'pysam/libchtslib.pxd' 2026-04-27T13:43:27,664 adding 'pysam/libchtslib.pyi' 2026-04-27T13:43:27,666 adding 'pysam/libchtslib.pyx' 2026-04-27T13:43:27,709 adding 'pysam/libcsamfile.c' 2026-04-27T13:43:27,761 adding 'pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:27,763 adding 'pysam/libcsamfile.pxd' 2026-04-27T13:43:27,765 adding 'pysam/libcsamfile.pyi' 2026-04-27T13:43:27,766 adding 'pysam/libcsamfile.pyx' 2026-04-27T13:43:27,792 adding 'pysam/libcsamtools.c' 2026-04-27T13:43:28,440 adding 'pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:28,458 adding 'pysam/libcsamtools.pxd' 2026-04-27T13:43:28,460 adding 'pysam/libcsamtools.pyi' 2026-04-27T13:43:28,461 adding 'pysam/libcsamtools.pyx' 2026-04-27T13:43:28,569 adding 'pysam/libctabix.c' 2026-04-27T13:43:28,817 adding 'pysam/libctabix.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:28,826 adding 'pysam/libctabix.pxd' 2026-04-27T13:43:28,828 adding 'pysam/libctabix.pyi' 2026-04-27T13:43:28,832 adding 'pysam/libctabix.pyx' 2026-04-27T13:43:28,941 adding 'pysam/libctabixproxies.c' 2026-04-27T13:43:29,218 adding 'pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:29,227 adding 'pysam/libctabixproxies.pxd' 2026-04-27T13:43:29,229 adding 'pysam/libctabixproxies.pyi' 2026-04-27T13:43:29,232 adding 'pysam/libctabixproxies.pyx' 2026-04-27T13:43:29,351 adding 'pysam/libcutils.c' 2026-04-27T13:43:29,616 adding 'pysam/libcutils.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:29,624 adding 'pysam/libcutils.pxd' 2026-04-27T13:43:29,625 adding 'pysam/libcutils.pyi' 2026-04-27T13:43:29,628 adding 'pysam/libcutils.pyx' 2026-04-27T13:43:29,804 adding 'pysam/libcvcf.c' 2026-04-27T13:43:30,303 adding 'pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so' 2026-04-27T13:43:30,319 adding 'pysam/libcvcf.pxd' 2026-04-27T13:43:30,320 adding 'pysam/libcvcf.pyi' 2026-04-27T13:43:30,326 adding 'pysam/libcvcf.pyx' 2026-04-27T13:43:30,327 adding 'pysam/py.typed' 2026-04-27T13:43:30,329 adding 'pysam/samtools.py' 2026-04-27T13:43:30,330 adding 'pysam/utils.py' 2026-04-27T13:43:30,332 adding 'pysam/version.h' 2026-04-27T13:43:30,333 adding 'pysam/version.py' 2026-04-27T13:43:30,334 adding 'pysam/version.pyi' 2026-04-27T13:43:30,336 adding 'pysam/include/__init__.py' 2026-04-27T13:43:30,341 adding 'pysam/include/bcftools/HMM.c' 2026-04-27T13:43:30,343 adding 'pysam/include/bcftools/HMM.c.pysam.c' 2026-04-27T13:43:30,345 adding 'pysam/include/bcftools/HMM.h' 2026-04-27T13:43:30,352 adding 'pysam/include/bcftools/LICENSE' 2026-04-27T13:43:30,353 adding 'pysam/include/bcftools/README' 2026-04-27T13:43:30,357 adding 'pysam/include/bcftools/abuf.c' 2026-04-27T13:43:30,361 adding 'pysam/include/bcftools/abuf.c.pysam.c' 2026-04-27T13:43:30,363 adding 'pysam/include/bcftools/abuf.h' 2026-04-27T13:43:30,369 adding 'pysam/include/bcftools/bam2bcf.c' 2026-04-27T13:43:30,375 adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' 2026-04-27T13:43:30,377 adding 'pysam/include/bcftools/bam2bcf.h' 2026-04-27T13:43:30,386 adding 'pysam/include/bcftools/bam2bcf_edlib.c' 2026-04-27T13:43:30,396 adding 'pysam/include/bcftools/bam2bcf_edlib.c.pysam.c' 2026-04-27T13:43:30,400 adding 'pysam/include/bcftools/bam2bcf_iaux.c' 2026-04-27T13:43:30,404 adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' 2026-04-27T13:43:30,409 adding 'pysam/include/bcftools/bam2bcf_indel.c' 2026-04-27T13:43:30,413 adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' 2026-04-27T13:43:30,415 adding 'pysam/include/bcftools/bam_sample.c' 2026-04-27T13:43:30,418 adding 'pysam/include/bcftools/bam_sample.c.pysam.c' 2026-04-27T13:43:30,419 adding 'pysam/include/bcftools/bam_sample.h' 2026-04-27T13:43:30,421 adding 'pysam/include/bcftools/bcftools.h' 2026-04-27T13:43:30,422 adding 'pysam/include/bcftools/bcftools.pysam.c' 2026-04-27T13:43:30,423 adding 'pysam/include/bcftools/bcftools.pysam.h' 2026-04-27T13:43:30,425 adding 'pysam/include/bcftools/bin.c' 2026-04-27T13:43:30,426 adding 'pysam/include/bcftools/bin.c.pysam.c' 2026-04-27T13:43:30,428 adding 'pysam/include/bcftools/bin.h' 2026-04-27T13:43:30,429 adding 'pysam/include/bcftools/call.h' 2026-04-27T13:43:30,432 adding 'pysam/include/bcftools/ccall.c' 2026-04-27T13:43:30,434 adding 'pysam/include/bcftools/ccall.c.pysam.c' 2026-04-27T13:43:30,435 adding 'pysam/include/bcftools/cigar_state.h' 2026-04-27T13:43:30,437 adding 'pysam/include/bcftools/cols.c' 2026-04-27T13:43:30,438 adding 'pysam/include/bcftools/cols.c.pysam.c' 2026-04-27T13:43:30,440 adding 'pysam/include/bcftools/cols.h' 2026-04-27T13:43:30,441 adding 'pysam/include/bcftools/config.h' 2026-04-27T13:43:30,447 adding 'pysam/include/bcftools/consensus.c' 2026-04-27T13:43:30,454 adding 'pysam/include/bcftools/consensus.c.pysam.c' 2026-04-27T13:43:30,461 adding 'pysam/include/bcftools/convert.c' 2026-04-27T13:43:30,468 adding 'pysam/include/bcftools/convert.c.pysam.c' 2026-04-27T13:43:30,470 adding 'pysam/include/bcftools/convert.h' 2026-04-27T13:43:30,487 adding 'pysam/include/bcftools/csq.c' 2026-04-27T13:43:30,505 adding 'pysam/include/bcftools/csq.c.pysam.c' 2026-04-27T13:43:30,507 adding 'pysam/include/bcftools/dbuf.h' 2026-04-27T13:43:30,508 adding 'pysam/include/bcftools/dist.c' 2026-04-27T13:43:30,510 adding 'pysam/include/bcftools/dist.c.pysam.c' 2026-04-27T13:43:30,511 adding 'pysam/include/bcftools/dist.h' 2026-04-27T13:43:30,515 adding 'pysam/include/bcftools/edlib.c' 2026-04-27T13:43:30,518 adding 'pysam/include/bcftools/edlib.c.pysam.c' 2026-04-27T13:43:30,521 adding 'pysam/include/bcftools/edlib.h' 2026-04-27T13:43:30,522 adding 'pysam/include/bcftools/em.c' 2026-04-27T13:43:30,524 adding 'pysam/include/bcftools/em.c.pysam.c' 2026-04-27T13:43:30,526 adding 'pysam/include/bcftools/extsort.c' 2026-04-27T13:43:30,528 adding 'pysam/include/bcftools/extsort.c.pysam.c' 2026-04-27T13:43:30,529 adding 'pysam/include/bcftools/extsort.h' 2026-04-27T13:43:30,544 adding 'pysam/include/bcftools/filter.c' 2026-04-27T13:43:30,561 adding 'pysam/include/bcftools/filter.c.pysam.c' 2026-04-27T13:43:30,563 adding 'pysam/include/bcftools/filter.h' 2026-04-27T13:43:30,568 adding 'pysam/include/bcftools/gff.c' 2026-04-27T13:43:30,573 adding 'pysam/include/bcftools/gff.c.pysam.c' 2026-04-27T13:43:30,575 adding 'pysam/include/bcftools/gff.h' 2026-04-27T13:43:30,577 adding 'pysam/include/bcftools/gvcf.c' 2026-04-27T13:43:30,579 adding 'pysam/include/bcftools/gvcf.c.pysam.c' 2026-04-27T13:43:30,580 adding 'pysam/include/bcftools/gvcf.h' 2026-04-27T13:43:30,582 adding 'pysam/include/bcftools/hclust.c' 2026-04-27T13:43:30,585 adding 'pysam/include/bcftools/hclust.c.pysam.c' 2026-04-27T13:43:30,586 adding 'pysam/include/bcftools/hclust.h' 2026-04-27T13:43:30,587 adding 'pysam/include/bcftools/hex.h' 2026-04-27T13:43:30,589 adding 'pysam/include/bcftools/khash_str2str.h' 2026-04-27T13:43:30,590 adding 'pysam/include/bcftools/kheap.h' 2026-04-27T13:43:30,592 adding 'pysam/include/bcftools/kmin.c' 2026-04-27T13:43:30,594 adding 'pysam/include/bcftools/kmin.c.pysam.c' 2026-04-27T13:43:30,596 adding 'pysam/include/bcftools/kmin.h' 2026-04-27T13:43:30,597 adding 'pysam/include/bcftools/main.c' 2026-04-27T13:43:30,599 adding 'pysam/include/bcftools/main.c.pysam.c' 2026-04-27T13:43:30,607 adding 'pysam/include/bcftools/mcall.c' 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'pysam/include/bcftools/regidx.c' 2026-04-27T13:43:30,666 adding 'pysam/include/bcftools/regidx.c.pysam.c' 2026-04-27T13:43:30,667 adding 'pysam/include/bcftools/regidx.h' 2026-04-27T13:43:30,671 adding 'pysam/include/bcftools/reheader.c' 2026-04-27T13:43:30,674 adding 'pysam/include/bcftools/reheader.c.pysam.c' 2026-04-27T13:43:30,676 adding 'pysam/include/bcftools/smpl_ilist.c' 2026-04-27T13:43:30,678 adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' 2026-04-27T13:43:30,679 adding 'pysam/include/bcftools/smpl_ilist.h' 2026-04-27T13:43:30,681 adding 'pysam/include/bcftools/str_finder.c' 2026-04-27T13:43:30,683 adding 'pysam/include/bcftools/str_finder.c.pysam.c' 2026-04-27T13:43:30,684 adding 'pysam/include/bcftools/str_finder.h' 2026-04-27T13:43:30,686 adding 'pysam/include/bcftools/tabix.c' 2026-04-27T13:43:30,687 adding 'pysam/include/bcftools/tabix.c.pysam.c' 2026-04-27T13:43:30,689 adding 'pysam/include/bcftools/tsv2vcf.c' 2026-04-27T13:43:30,691 adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' 2026-04-27T13:43:30,692 adding 'pysam/include/bcftools/tsv2vcf.h' 2026-04-27T13:43:30,696 adding 'pysam/include/bcftools/utlist.h' 2026-04-27T13:43:30,698 adding 'pysam/include/bcftools/variantkey.h' 2026-04-27T13:43:30,715 adding 'pysam/include/bcftools/vcfannotate.c' 2026-04-27T13:43:30,732 adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' 2026-04-27T13:43:30,737 adding 'pysam/include/bcftools/vcfbuf.c' 2026-04-27T13:43:30,741 adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' 2026-04-27T13:43:30,743 adding 'pysam/include/bcftools/vcfbuf.h' 2026-04-27T13:43:30,749 adding 'pysam/include/bcftools/vcfcall.c' 2026-04-27T13:43:30,755 adding 'pysam/include/bcftools/vcfcall.c.pysam.c' 2026-04-27T13:43:30,762 adding 'pysam/include/bcftools/vcfcnv.c' 2026-04-27T13:43:30,768 adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' 2026-04-27T13:43:30,774 adding 'pysam/include/bcftools/vcfconcat.c' 2026-04-27T13:43:30,780 adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' 2026-04-27T13:43:30,787 adding 'pysam/include/bcftools/vcfconvert.c' 2026-04-27T13:43:30,795 adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' 2026-04-27T13:43:30,799 adding 'pysam/include/bcftools/vcffilter.c' 2026-04-27T13:43:30,802 adding 'pysam/include/bcftools/vcffilter.c.pysam.c' 2026-04-27T13:43:30,809 adding 'pysam/include/bcftools/vcfgtcheck.c' 2026-04-27T13:43:30,817 adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' 2026-04-27T13:43:30,819 adding 'pysam/include/bcftools/vcfhead.c' 2026-04-27T13:43:30,820 adding 'pysam/include/bcftools/vcfhead.c.pysam.c' 2026-04-27T13:43:30,822 adding 'pysam/include/bcftools/vcfindex.c' 2026-04-27T13:43:30,825 adding 'pysam/include/bcftools/vcfindex.c.pysam.c' 2026-04-27T13:43:30,828 adding 'pysam/include/bcftools/vcfisec.c' 2026-04-27T13:43:30,832 adding 'pysam/include/bcftools/vcfisec.c.pysam.c' 2026-04-27T13:43:30,848 adding 'pysam/include/bcftools/vcfmerge.c' 2026-04-27T13:43:30,865 adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' 2026-04-27T13:43:30,877 adding 'pysam/include/bcftools/vcfnorm.c' 2026-04-27T13:43:30,889 adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' 2026-04-27T13:43:30,893 adding 'pysam/include/bcftools/vcfplugin.c' 2026-04-27T13:43:30,897 adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' 2026-04-27T13:43:30,900 adding 'pysam/include/bcftools/vcfquery.c' 2026-04-27T13:43:30,902 adding 'pysam/include/bcftools/vcfquery.c.pysam.c' 2026-04-27T13:43:30,908 adding 'pysam/include/bcftools/vcfroh.c' 2026-04-27T13:43:30,914 adding 'pysam/include/bcftools/vcfroh.c.pysam.c' 2026-04-27T13:43:30,917 adding 'pysam/include/bcftools/vcfsom.c' 2026-04-27T13:43:30,920 adding 'pysam/include/bcftools/vcfsom.c.pysam.c' 2026-04-27T13:43:30,924 adding 'pysam/include/bcftools/vcfsort.c' 2026-04-27T13:43:30,927 adding 'pysam/include/bcftools/vcfsort.c.pysam.c' 2026-04-27T13:43:30,936 adding 'pysam/include/bcftools/vcfstats.c' 2026-04-27T13:43:30,945 adding 'pysam/include/bcftools/vcfstats.c.pysam.c' 2026-04-27T13:43:30,950 adding 'pysam/include/bcftools/vcfview.c' 2026-04-27T13:43:30,954 adding 'pysam/include/bcftools/vcfview.c.pysam.c' 2026-04-27T13:43:30,956 adding 'pysam/include/bcftools/vcmp.c' 2026-04-27T13:43:30,957 adding 'pysam/include/bcftools/vcmp.c.pysam.c' 2026-04-27T13:43:30,959 adding 'pysam/include/bcftools/vcmp.h' 2026-04-27T13:43:30,960 adding 'pysam/include/bcftools/version.c' 2026-04-27T13:43:30,962 adding 'pysam/include/bcftools/version.c.pysam.c' 2026-04-27T13:43:30,963 adding 'pysam/include/bcftools/version.sh' 2026-04-27T13:43:30,967 adding 'pysam/include/htslib/LICENSE' 2026-04-27T13:43:30,972 adding 'pysam/include/htslib/Makefile' 2026-04-27T13:43:30,974 adding 'pysam/include/htslib/README' 2026-04-27T13:43:30,977 adding 'pysam/include/htslib/bcf_sr_sort.c' 2026-04-27T13:43:30,978 adding 'pysam/include/htslib/bcf_sr_sort.h' 2026-04-27T13:43:30,988 adding 'pysam/include/htslib/bgzf.c' 2026-04-27T13:43:30,990 adding 'pysam/include/htslib/bgzf_internal.h' 2026-04-27T13:43:30,992 adding 'pysam/include/htslib/builddir_vars.mk.in' 2026-04-27T13:43:30,997 adding 'pysam/include/htslib/config.guess' 2026-04-27T13:43:30,999 adding 'pysam/include/htslib/config.h' 2026-04-27T13:43:31,001 adding 'pysam/include/htslib/config.h.in' 2026-04-27T13:43:31,002 adding 'pysam/include/htslib/config.mk.in' 2026-04-27T13:43:31,007 adding 'pysam/include/htslib/config.sub' 2026-04-27T13:43:31,033 adding 'pysam/include/htslib/configure' 2026-04-27T13:43:31,038 adding 'pysam/include/htslib/configure.ac' 2026-04-27T13:43:31,040 adding 'pysam/include/htslib/errmod.c' 2026-04-27T13:43:31,044 adding 'pysam/include/htslib/faidx.c' 2026-04-27T13:43:31,045 adding 'pysam/include/htslib/fuzz_settings.h' 2026-04-27T13:43:31,055 adding 'pysam/include/htslib/header.c' 2026-04-27T13:43:31,058 adding 'pysam/include/htslib/header.h' 2026-04-27T13:43:31,063 adding 'pysam/include/htslib/hfile.c' 2026-04-27T13:43:31,065 adding 'pysam/include/htslib/hfile_gcs.c' 2026-04-27T13:43:31,067 adding 'pysam/include/htslib/hfile_internal.h' 2026-04-27T13:43:31,073 adding 'pysam/include/htslib/hfile_libcurl.c' 2026-04-27T13:43:31,081 adding 'pysam/include/htslib/hfile_s3.c' 2026-04-27T13:43:31,101 adding 'pysam/include/htslib/hts.c' 2026-04-27T13:43:31,105 adding 'pysam/include/htslib/hts_expr.c' 2026-04-27T13:43:31,107 adding 'pysam/include/htslib/hts_internal.h' 2026-04-27T13:43:31,108 adding 'pysam/include/htslib/hts_os.c' 2026-04-27T13:43:31,110 adding 'pysam/include/htslib/hts_time_funcs.h' 2026-04-27T13:43:31,111 adding 'pysam/include/htslib/htscodecs_bundled.mk' 2026-04-27T13:43:31,112 adding 'pysam/include/htslib/htscodecs_external.mk' 2026-04-27T13:43:31,114 adding 'pysam/include/htslib/htslib.mk' 2026-04-27T13:43:31,115 adding 'pysam/include/htslib/htslib.pc.in' 2026-04-27T13:43:31,117 adding 'pysam/include/htslib/htslib_vars.mk' 2026-04-27T13:43:31,119 adding 'pysam/include/htslib/kfunc.c' 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'pysam/include/htslib/textutils_internal.h' 2026-04-27T13:43:31,186 adding 'pysam/include/htslib/thread_pool.c' 2026-04-27T13:43:31,188 adding 'pysam/include/htslib/thread_pool_internal.h' 2026-04-27T13:43:31,214 adding 'pysam/include/htslib/vcf.c' 2026-04-27T13:43:31,217 adding 'pysam/include/htslib/vcf_sweep.c' 2026-04-27T13:43:31,222 adding 'pysam/include/htslib/vcfutils.c' 2026-04-27T13:43:31,224 adding 'pysam/include/htslib/version.sh' 2026-04-27T13:43:31,226 adding 'pysam/include/htslib/cram/cram.h' 2026-04-27T13:43:31,238 adding 'pysam/include/htslib/cram/cram_codecs.c' 2026-04-27T13:43:31,240 adding 'pysam/include/htslib/cram/cram_codecs.h' 2026-04-27T13:43:31,253 adding 'pysam/include/htslib/cram/cram_decode.c' 2026-04-27T13:43:31,255 adding 'pysam/include/htslib/cram/cram_decode.h' 2026-04-27T13:43:31,270 adding 'pysam/include/htslib/cram/cram_encode.c' 2026-04-27T13:43:31,272 adding 'pysam/include/htslib/cram/cram_encode.h' 2026-04-27T13:43:31,276 adding 'pysam/include/htslib/cram/cram_external.c' 2026-04-27T13:43:31,280 adding 'pysam/include/htslib/cram/cram_index.c' 2026-04-27T13:43:31,282 adding 'pysam/include/htslib/cram/cram_index.h' 2026-04-27T13:43:31,301 adding 'pysam/include/htslib/cram/cram_io.c' 2026-04-27T13:43:31,305 adding 'pysam/include/htslib/cram/cram_io.h' 2026-04-27T13:43:31,306 adding 'pysam/include/htslib/cram/cram_samtools.h' 2026-04-27T13:43:31,308 adding 'pysam/include/htslib/cram/cram_stats.c' 2026-04-27T13:43:31,309 adding 'pysam/include/htslib/cram/cram_stats.h' 2026-04-27T13:43:31,313 adding 'pysam/include/htslib/cram/cram_structs.h' 2026-04-27T13:43:31,316 adding 'pysam/include/htslib/cram/mFILE.c' 2026-04-27T13:43:31,318 adding 'pysam/include/htslib/cram/mFILE.h' 2026-04-27T13:43:31,319 adding 'pysam/include/htslib/cram/misc.h' 2026-04-27T13:43:31,321 adding 'pysam/include/htslib/cram/open_trace_file.c' 2026-04-27T13:43:31,323 adding 'pysam/include/htslib/cram/open_trace_file.h' 2026-04-27T13:43:31,325 adding 'pysam/include/htslib/cram/os.h' 2026-04-27T13:43:31,326 adding 'pysam/include/htslib/cram/pooled_alloc.c' 2026-04-27T13:43:31,327 adding 'pysam/include/htslib/cram/pooled_alloc.h' 2026-04-27T13:43:31,329 adding 'pysam/include/htslib/cram/string_alloc.c' 2026-04-27T13:43:31,330 adding 'pysam/include/htslib/cram/string_alloc.h' 2026-04-27T13:43:31,336 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' 2026-04-27T13:43:31,338 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' 2026-04-27T13:43:31,339 adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' 2026-04-27T13:43:31,341 adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' 2026-04-27T13:43:31,347 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' 2026-04-27T13:43:31,349 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' 2026-04-27T13:43:31,350 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' 2026-04-27T13:43:31,351 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' 2026-04-27T13:43:31,353 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' 2026-04-27T13:43:31,355 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' 2026-04-27T13:43:31,356 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' 2026-04-27T13:43:31,359 adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' 2026-04-27T13:43:31,360 adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' 2026-04-27T13:43:31,363 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' 2026-04-27T13:43:31,366 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' 2026-04-27T13:43:31,367 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' 2026-04-27T13:43:31,370 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' 2026-04-27T13:43:31,373 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' 2026-04-27T13:43:31,375 adding 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2026-04-27T13:43:31,454 adding 'pysam/include/htslib/htslib/hts_expr.h' 2026-04-27T13:43:31,456 adding 'pysam/include/htslib/htslib/hts_log.h' 2026-04-27T13:43:31,457 adding 'pysam/include/htslib/htslib/hts_os.h' 2026-04-27T13:43:31,459 adding 'pysam/include/htslib/htslib/kbitset.h' 2026-04-27T13:43:31,460 adding 'pysam/include/htslib/htslib/kfunc.h' 2026-04-27T13:43:31,463 adding 'pysam/include/htslib/htslib/khash.h' 2026-04-27T13:43:31,465 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2026-04-27T13:43:31,466 adding 'pysam/include/htslib/htslib/klist.h' 2026-04-27T13:43:31,468 adding 'pysam/include/htslib/htslib/knetfile.h' 2026-04-27T13:43:31,469 adding 'pysam/include/htslib/htslib/kroundup.h' 2026-04-27T13:43:31,471 adding 'pysam/include/htslib/htslib/kseq.h' 2026-04-27T13:43:31,473 adding 'pysam/include/htslib/htslib/ksort.h' 2026-04-27T13:43:31,475 adding 'pysam/include/htslib/htslib/kstring.h' 2026-04-27T13:43:31,477 adding 'pysam/include/htslib/htslib/regidx.h' 2026-04-27T13:43:31,489 adding 'pysam/include/htslib/htslib/sam.h' 2026-04-27T13:43:31,492 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2026-04-27T13:43:31,494 adding 'pysam/include/htslib/htslib/tbx.h' 2026-04-27T13:43:31,496 adding 'pysam/include/htslib/htslib/thread_pool.h' 2026-04-27T13:43:31,505 adding 'pysam/include/htslib/htslib/vcf.h' 2026-04-27T13:43:31,507 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2026-04-27T13:43:31,508 adding 'pysam/include/htslib/htslib/vcfutils.h' 2026-04-27T13:43:31,510 adding 'pysam/include/htslib/m4/hts_check_compile_flags_needed.m4' 2026-04-27T13:43:31,512 adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' 2026-04-27T13:43:31,513 adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' 2026-04-27T13:43:31,515 adding 'pysam/include/htslib/m4/pkg.m4' 2026-04-27T13:43:31,517 adding 'pysam/include/htslib/os/lzma_stub.h' 2026-04-27T13:43:31,519 adding 'pysam/include/htslib/os/rand.c' 2026-04-27T13:43:31,523 adding 'pysam/include/samtools/LICENSE' 2026-04-27T13:43:31,524 adding 'pysam/include/samtools/README' 2026-04-27T13:43:31,532 adding 'pysam/include/samtools/amplicon_stats.c' 2026-04-27T13:43:31,540 adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' 2026-04-27T13:43:31,542 adding 'pysam/include/samtools/bam.c' 2026-04-27T13:43:31,544 adding 'pysam/include/samtools/bam.c.pysam.c' 2026-04-27T13:43:31,545 adding 'pysam/include/samtools/bam.h' 2026-04-27T13:43:31,549 adding 'pysam/include/samtools/bam2depth.c' 2026-04-27T13:43:31,553 adding 'pysam/include/samtools/bam2depth.c.pysam.c' 2026-04-27T13:43:31,555 adding 'pysam/include/samtools/bam_addrprg.c' 2026-04-27T13:43:31,558 adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' 2026-04-27T13:43:31,562 adding 'pysam/include/samtools/bam_ampliconclip.c' 2026-04-27T13:43:31,567 adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' 2026-04-27T13:43:31,568 adding 'pysam/include/samtools/bam_ampliconclip.h' 2026-04-27T13:43:31,570 adding 'pysam/include/samtools/bam_aux.c' 2026-04-27T13:43:31,571 adding 'pysam/include/samtools/bam_aux.c.pysam.c' 2026-04-27T13:43:31,575 adding 'pysam/include/samtools/bam_cat.c' 2026-04-27T13:43:31,580 adding 'pysam/include/samtools/bam_cat.c.pysam.c' 2026-04-27T13:43:31,585 adding 'pysam/include/samtools/bam_checksum.c' 2026-04-27T13:43:31,590 adding 'pysam/include/samtools/bam_checksum.c.pysam.c' 2026-04-27T13:43:31,592 adding 'pysam/include/samtools/bam_color.c' 2026-04-27T13:43:31,593 adding 'pysam/include/samtools/bam_color.c.pysam.c' 2026-04-27T13:43:31,607 adding 'pysam/include/samtools/bam_consensus.c' 2026-04-27T13:43:31,621 adding 'pysam/include/samtools/bam_consensus.c.pysam.c' 2026-04-27T13:43:31,624 adding 'pysam/include/samtools/bam_consensus_tab.h' 2026-04-27T13:43:31,630 adding 'pysam/include/samtools/bam_fastq.c' 2026-04-27T13:43:31,638 adding 'pysam/include/samtools/bam_fastq.c.pysam.c' 2026-04-27T13:43:31,640 adding 'pysam/include/samtools/bam_flags.c' 2026-04-27T13:43:31,641 adding 'pysam/include/samtools/bam_flags.c.pysam.c' 2026-04-27T13:43:31,644 adding 'pysam/include/samtools/bam_import.c' 2026-04-27T13:43:31,646 adding 'pysam/include/samtools/bam_import.c.pysam.c' 2026-04-27T13:43:31,648 adding 'pysam/include/samtools/bam_index.c' 2026-04-27T13:43:31,650 adding 'pysam/include/samtools/bam_index.c.pysam.c' 2026-04-27T13:43:31,652 adding 'pysam/include/samtools/bam_lpileup.c' 2026-04-27T13:43:31,653 adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' 2026-04-27T13:43:31,655 adding 'pysam/include/samtools/bam_lpileup.h' 2026-04-27T13:43:31,664 adding 'pysam/include/samtools/bam_markdup.c' 2026-04-27T13:43:31,673 adding 'pysam/include/samtools/bam_markdup.c.pysam.c' 2026-04-27T13:43:31,679 adding 'pysam/include/samtools/bam_mate.c' 2026-04-27T13:43:31,684 adding 'pysam/include/samtools/bam_mate.c.pysam.c' 2026-04-27T13:43:31,687 adding 'pysam/include/samtools/bam_md.c' 2026-04-27T13:43:31,690 adding 'pysam/include/samtools/bam_md.c.pysam.c' 2026-04-27T13:43:31,691 adding 'pysam/include/samtools/bam_plbuf.c' 2026-04-27T13:43:31,692 adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' 2026-04-27T13:43:31,694 adding 'pysam/include/samtools/bam_plbuf.h' 2026-04-27T13:43:31,699 adding 'pysam/include/samtools/bam_plcmd.c' 2026-04-27T13:43:31,704 adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' 2026-04-27T13:43:31,706 adding 'pysam/include/samtools/bam_quickcheck.c' 2026-04-27T13:43:31,708 adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' 2026-04-27T13:43:31,710 adding 'pysam/include/samtools/bam_reheader.c' 2026-04-27T13:43:31,713 adding 'pysam/include/samtools/bam_reheader.c.pysam.c' 2026-04-27T13:43:31,715 adding 'pysam/include/samtools/bam_rmdup.c' 2026-04-27T13:43:31,717 adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' 2026-04-27T13:43:31,719 adding 'pysam/include/samtools/bam_rmdupse.c' 2026-04-27T13:43:31,720 adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' 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adding 'pysam/include/samtools/sam_utils.c' 2026-04-27T13:43:31,862 adding 'pysam/include/samtools/sam_utils.c.pysam.c' 2026-04-27T13:43:31,863 adding 'pysam/include/samtools/sam_utils.h' 2026-04-27T13:43:31,870 adding 'pysam/include/samtools/sam_view.c' 2026-04-27T13:43:31,878 adding 'pysam/include/samtools/sam_view.c.pysam.c' 2026-04-27T13:43:31,880 adding 'pysam/include/samtools/sample.c' 2026-04-27T13:43:31,882 adding 'pysam/include/samtools/sample.c.pysam.c' 2026-04-27T13:43:31,883 adding 'pysam/include/samtools/sample.h' 2026-04-27T13:43:31,884 adding 'pysam/include/samtools/samtools.h' 2026-04-27T13:43:31,886 adding 'pysam/include/samtools/samtools.pysam.c' 2026-04-27T13:43:31,887 adding 'pysam/include/samtools/samtools.pysam.h' 2026-04-27T13:43:31,889 adding 'pysam/include/samtools/splaysort.h' 2026-04-27T13:43:31,901 adding 'pysam/include/samtools/stats.c' 2026-04-27T13:43:31,915 adding 'pysam/include/samtools/stats.c.pysam.c' 2026-04-27T13:43:31,917 adding 'pysam/include/samtools/stats_isize.c' 2026-04-27T13:43:31,919 adding 'pysam/include/samtools/stats_isize.c.pysam.c' 2026-04-27T13:43:31,920 adding 'pysam/include/samtools/stats_isize.h' 2026-04-27T13:43:31,923 adding 'pysam/include/samtools/tmp_file.c' 2026-04-27T13:43:31,925 adding 'pysam/include/samtools/tmp_file.c.pysam.c' 2026-04-27T13:43:31,926 adding 'pysam/include/samtools/tmp_file.h' 2026-04-27T13:43:31,927 adding 'pysam/include/samtools/version.sh' 2026-04-27T13:43:31,929 adding 'pysam/include/samtools/lz4/LICENSE' 2026-04-27T13:43:31,936 adding 'pysam/include/samtools/lz4/lz4.c' 2026-04-27T13:43:31,942 adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' 2026-04-27T13:43:31,945 adding 'pysam/include/samtools/lz4/lz4.h' 2026-04-27T13:43:31,948 adding 'pysam-0.24.0.dist-info/licenses/AUTHORS' 2026-04-27T13:43:31,950 adding 'pysam-0.24.0.dist-info/licenses/COPYING' 2026-04-27T13:43:31,951 adding 'pysam-0.24.0.dist-info/METADATA' 2026-04-27T13:43:31,952 adding 'pysam-0.24.0.dist-info/WHEEL' 2026-04-27T13:43:31,953 adding 'pysam-0.24.0.dist-info/top_level.txt' 2026-04-27T13:43:31,960 adding 'pysam-0.24.0.dist-info/RECORD' 2026-04-27T13:43:32,148 removing build/bdist.linux-armv7l/wheel 2026-04-27T13:43:34,275 Building wheel for pysam (pyproject.toml): finished with status 'done' 2026-04-27T13:43:34,655 Created wheel for pysam: filename=pysam-0.24.0-cp311-cp311-linux_armv7l.whl size=17812273 sha256=c4d511363751a313bebc4c997232f3c9401d67345e7732831018948703c584fb 2026-04-27T13:43:34,656 Stored in directory: /tmp/pip-ephem-wheel-cache-d6drvw4t/wheels/3a/e2/71/eba3c568480e41b8093f58796b5faad9956a66c7a975127129 2026-04-27T13:43:34,688 Successfully built pysam 2026-04-27T13:43:35,128 Removed build tracker: '/tmp/pip-build-tracker-3i0vqi4i'