2026-04-27T15:32:42,619 Created temporary directory: /tmp/pip-ephem-wheel-cache-j7pvq4cy
2026-04-27T15:32:42,621 Created temporary directory: /tmp/pip-build-tracker-hto5ced6
2026-04-27T15:32:42,621 Initialized build tracking at /tmp/pip-build-tracker-hto5ced6
2026-04-27T15:32:42,622 Created build tracker: /tmp/pip-build-tracker-hto5ced6
2026-04-27T15:32:42,622 Entered build tracker: /tmp/pip-build-tracker-hto5ced6
2026-04-27T15:32:42,623 Created temporary directory: /tmp/pip-wheel-xo5v0cvv
2026-04-27T15:32:42,626 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-27T15:32:42,628 Created temporary directory: /tmp/pip-ephem-wheel-cache-dk8rkawa
2026-04-27T15:32:42,650 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-27T15:32:42,654 2 location(s) to search for versions of ilus:
2026-04-27T15:32:42,654 * https://pypi.org/simple/ilus/
2026-04-27T15:32:42,654 * https://www.piwheels.org/simple/ilus/
2026-04-27T15:32:42,654 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2026-04-27T15:32:42,655 Getting page https://pypi.org/simple/ilus/
2026-04-27T15:32:42,657 Found index url https://pypi.org/simple
2026-04-27T15:32:42,883 Fetched page https://pypi.org/simple/ilus/ as application/vnd.pypi.simple.v1+json
2026-04-27T15:32:42,887   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 0.1.0
2026-04-27T15:32:42,888   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.0
2026-04-27T15:32:42,889   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.1
2026-04-27T15:32:42,889   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.2
2026-04-27T15:32:42,890   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.3
2026-04-27T15:32:42,891   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.4
2026-04-27T15:32:42,892   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.0
2026-04-27T15:32:42,892   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.1
2026-04-27T15:32:42,893   Found link https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.1
2026-04-27T15:32:42,894   Found link https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.2
2026-04-27T15:32:42,894   Found link https://files.pythonhosted.org/packages/02/09/b4d9c429ed8e64f724b62efb78121803f65a3f90e02d15b45873166b1ccb/ilus-1.3.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.0
2026-04-27T15:32:42,895   Found link https://files.pythonhosted.org/packages/37/55/b19f8e151ea4fa9c133ba6d2c24943b15151b024b5bc7061e697b735e684/ilus-1.3.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.1
2026-04-27T15:32:42,896   Found link https://files.pythonhosted.org/packages/ca/da/e63844784ebb375cd530002de641ccc8a2abd8e95fa441516118c2bf1dea/ilus-1.3.2.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 1.3.2
2026-04-27T15:32:42,898   Found link https://files.pythonhosted.org/packages/a9/f5/39b3283f53318f349c8b722df8c91f6e316cd8ba20d8393a851118133d5a/ilus-2.0.0.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.0
2026-04-27T15:32:42,898   Found link https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.1
2026-04-27T15:32:42,899   Found link https://files.pythonhosted.org/packages/58/04/47a2e72eeec499aa8eb80ac8290605834aa3aadb99e63fb1ab095719fec8/ilus-2.0.2.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.2
2026-04-27T15:32:42,900   Found link https://files.pythonhosted.org/packages/45/81/d9bddfe3ea4c1000e299a284cfd70d04b17c24327fabccb7a4ed84fdaf79/ilus-2.0.3.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.3
2026-04-27T15:32:42,901   Found link https://files.pythonhosted.org/packages/94/ff/9e14193f3fcd9d564e94e26d618551c719bf1154da9892556226e93c9a5c/ilus-2.0.4.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.4
2026-04-27T15:32:42,902 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2026-04-27T15:32:42,902 Getting page https://www.piwheels.org/simple/ilus/
2026-04-27T15:32:42,904 Found index url https://www.piwheels.org/simple
2026-04-27T15:32:43,076 Fetched page https://www.piwheels.org/simple/ilus/ as text/html
2026-04-27T15:32:43,080   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-2.0.1-py3-none-any.whl#sha256=936302441227e28299029bb1accbbfaba83b1492fd3cba9574d1c98b951dc676 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:32:43,081   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-2.0.0-py3-none-any.whl#sha256=3ff0bdf5861ce49860d50b14e8c41b3662bc37b4313e3bc43116854776dc9382 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:32:43,082   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.2-py3-none-any.whl#sha256=6d315e8e8de0712c852788a1f124af02f5ccd5763b5d7210b937466f1a466365 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:32:43,082   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.1-py3-none-any.whl#sha256=95994f378ecd3614fbaa5acf6972cc8bfaca26a138d2bb6953332d7e1d188abe (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,083   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.0-py3-none-any.whl#sha256=86f3cfa3b4075f80f64038efd70c6b4dcc9b2e92dd73740e90c438fbf17e6402 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,084   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.2-py3-none-any.whl#sha256=57d5cc7a4de501b9759687f303a8ce24dee56a6bf3f469cdf8f34eedfbd5e3d6 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,084   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.1-py3-none-any.whl#sha256=b35d6734ffaccb93bea222efb586b94c5e948e69b9410862e345c77db351eedb (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,085   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.1-py3-none-any.whl#sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,085   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,086   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,087   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,087   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,088   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:32:43,088 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2026-04-27T15:32:43,089 Skipping link: not a file: https://pypi.org/simple/ilus/
2026-04-27T15:32:43,113 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2026-04-27T15:32:43,143 Collecting ilus==2.0.2
2026-04-27T15:32:43,154   Created temporary directory: /tmp/pip-unpack-ul6a2cmt
2026-04-27T15:32:43,382   Downloading ilus-2.0.2.tar.gz (58 kB)
2026-04-27T15:32:43,506   Added ilus==2.0.2 from https://files.pythonhosted.org/packages/58/04/47a2e72eeec499aa8eb80ac8290605834aa3aadb99e63fb1ab095719fec8/ilus-2.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-hto5ced6'
2026-04-27T15:32:43,507   Running setup.py (path:/tmp/pip-wheel-xo5v0cvv/ilus_7bff974b538a46ae8357e56315ebdaa4/setup.py) egg_info for package ilus
2026-04-27T15:32:43,508   Created temporary directory: /tmp/pip-pip-egg-info-ghnh2zic
2026-04-27T15:32:43,508   Preparing metadata (setup.py): started
2026-04-27T15:32:43,510   Running command python setup.py egg_info
2026-04-27T15:32:44,349   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-27T15:32:44,350   !!

2026-04-27T15:32:44,351           ********************************************************************************
2026-04-27T15:32:44,351           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-27T15:32:44,353           License :: OSI Approved :: BSD License

2026-04-27T15:32:44,354           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-27T15:32:44,355           ********************************************************************************

2026-04-27T15:32:44,356   !!
2026-04-27T15:32:44,357     self._finalize_license_expression()
2026-04-27T15:32:44,379   running egg_info
2026-04-27T15:32:44,407   creating /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info
2026-04-27T15:32:44,408   writing /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/PKG-INFO
2026-04-27T15:32:44,412   writing dependency_links to /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/dependency_links.txt
2026-04-27T15:32:44,413   writing entry points to /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/entry_points.txt
2026-04-27T15:32:44,415   writing requirements to /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/requires.txt
2026-04-27T15:32:44,416   writing top-level names to /tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/top_level.txt
2026-04-27T15:32:44,418   writing manifest file '/tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/SOURCES.txt'
2026-04-27T15:32:44,514   reading manifest file '/tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/SOURCES.txt'
2026-04-27T15:32:44,515   adding license file 'LICENSE'
2026-04-27T15:32:44,518   writing manifest file '/tmp/pip-pip-egg-info-ghnh2zic/ilus.egg-info/SOURCES.txt'
2026-04-27T15:32:44,625   Preparing metadata (setup.py): finished with status 'done'
2026-04-27T15:32:44,631   Source in /tmp/pip-wheel-xo5v0cvv/ilus_7bff974b538a46ae8357e56315ebdaa4 has version 2.0.2, which satisfies requirement ilus==2.0.2 from https://files.pythonhosted.org/packages/58/04/47a2e72eeec499aa8eb80ac8290605834aa3aadb99e63fb1ab095719fec8/ilus-2.0.2.tar.gz
2026-04-27T15:32:44,632   Removed ilus==2.0.2 from https://files.pythonhosted.org/packages/58/04/47a2e72eeec499aa8eb80ac8290605834aa3aadb99e63fb1ab095719fec8/ilus-2.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-hto5ced6'
2026-04-27T15:32:44,642 Created temporary directory: /tmp/pip-unpack-dn_4l35j
2026-04-27T15:32:44,642 Building wheels for collected packages: ilus
2026-04-27T15:32:44,647   Created temporary directory: /tmp/pip-wheel-tsa2xwxh
2026-04-27T15:32:44,648   Building wheel for ilus (setup.py): started
2026-04-27T15:32:44,649   Destination directory: /tmp/pip-wheel-tsa2xwxh
2026-04-27T15:32:44,649   Running command python setup.py bdist_wheel
2026-04-27T15:32:45,480   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-27T15:32:45,480   !!

2026-04-27T15:32:45,481           ********************************************************************************
2026-04-27T15:32:45,482           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-27T15:32:45,483           License :: OSI Approved :: BSD License

2026-04-27T15:32:45,484           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-27T15:32:45,484           ********************************************************************************

2026-04-27T15:32:45,486   !!
2026-04-27T15:32:45,486     self._finalize_license_expression()
2026-04-27T15:32:45,487   running bdist_wheel
2026-04-27T15:32:45,615   running build
2026-04-27T15:32:45,616   running build_py
2026-04-27T15:32:45,649   creating build/lib/ilus
2026-04-27T15:32:45,651   copying ilus/main.py -> build/lib/ilus
2026-04-27T15:32:45,653   copying ilus/__init__.py -> build/lib/ilus
2026-04-27T15:32:45,655   creating build/lib/ilus/pipeline
2026-04-27T15:32:45,657   copying ilus/pipeline/_command_args.py -> build/lib/ilus/pipeline
2026-04-27T15:32:45,659   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2026-04-27T15:32:45,661   copying ilus/pipeline/_germline_short_variant_discovery.py -> build/lib/ilus/pipeline
2026-04-27T15:32:45,664   creating build/lib/ilus/modules
2026-04-27T15:32:45,665   copying ilus/modules/sentieon.py -> build/lib/ilus/modules
2026-04-27T15:32:45,668   copying ilus/modules/gatk.py -> build/lib/ilus/modules
2026-04-27T15:32:45,671   copying ilus/modules/bwa.py -> build/lib/ilus/modules
2026-04-27T15:32:45,673   copying ilus/modules/bcftools.py -> build/lib/ilus/modules
2026-04-27T15:32:45,675   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2026-04-27T15:32:45,676   copying ilus/modules/soapnuke.py -> build/lib/ilus/modules
2026-04-27T15:32:45,679   creating build/lib/ilus/launch
2026-04-27T15:32:45,680   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2026-04-27T15:32:45,681   copying ilus/launch/do.py -> build/lib/ilus/launch
2026-04-27T15:32:45,683   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2026-04-27T15:32:45,686   creating build/lib/ilus/modules/utils
2026-04-27T15:32:45,687   copying ilus/modules/utils/_check_config.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,690   copying ilus/modules/utils/_check_jobs.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,691   copying ilus/modules/utils/__init__.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,693   copying ilus/modules/utils/_check_input.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,696   copying ilus/modules/utils/_utils.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,698   copying ilus/modules/utils/_split_jobs.py -> build/lib/ilus/modules/utils
2026-04-27T15:32:45,700   creating build/lib/ilus/modules/summary
2026-04-27T15:32:45,701   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2026-04-27T15:32:45,703   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2026-04-27T15:32:45,705   running egg_info
2026-04-27T15:32:45,732   writing ilus.egg-info/PKG-INFO
2026-04-27T15:32:45,735   writing dependency_links to ilus.egg-info/dependency_links.txt
2026-04-27T15:32:45,737   writing entry points to ilus.egg-info/entry_points.txt
2026-04-27T15:32:45,738   writing requirements to ilus.egg-info/requires.txt
2026-04-27T15:32:45,739   writing top-level names to ilus.egg-info/top_level.txt
2026-04-27T15:32:45,774   reading manifest file 'ilus.egg-info/SOURCES.txt'
2026-04-27T15:32:45,777   adding license file 'LICENSE'
2026-04-27T15:32:45,781   writing manifest file 'ilus.egg-info/SOURCES.txt'
2026-04-27T15:32:45,815   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-04-27T15:32:45,815   !!

2026-04-27T15:32:45,816           ********************************************************************************
2026-04-27T15:32:45,817           Please avoid running ``setup.py`` directly.
2026-04-27T15:32:45,817           Instead, use pypa/build, pypa/installer or other
2026-04-27T15:32:45,818           standards-based tools.

2026-04-27T15:32:45,819           This deprecation is overdue, please update your project and remove deprecated
2026-04-27T15:32:45,819           calls to avoid build errors in the future.

2026-04-27T15:32:45,821           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-04-27T15:32:45,821           ********************************************************************************

2026-04-27T15:32:45,822   !!
2026-04-27T15:32:45,823     self.initialize_options()
2026-04-27T15:32:45,843   installing to build/bdist.linux-armv7l/wheel
2026-04-27T15:32:45,844   running install
2026-04-27T15:32:45,868   running install_lib
2026-04-27T15:32:45,894   creating build/bdist.linux-armv7l/wheel
2026-04-27T15:32:45,896   creating build/bdist.linux-armv7l/wheel/ilus
2026-04-27T15:32:45,898   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2026-04-27T15:32:45,899   copying build/lib/ilus/pipeline/_command_args.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:32:45,901   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:32:45,903   copying build/lib/ilus/pipeline/_germline_short_variant_discovery.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:32:45,906   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-04-27T15:32:45,908   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-04-27T15:32:45,910   creating build/bdist.linux-armv7l/wheel/ilus/modules
2026-04-27T15:32:45,911   copying build/lib/ilus/modules/sentieon.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,913   copying build/lib/ilus/modules/gatk.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,916   copying build/lib/ilus/modules/bwa.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,917   copying build/lib/ilus/modules/bcftools.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,919   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,921   creating build/bdist.linux-armv7l/wheel/ilus/modules/utils
2026-04-27T15:32:45,922   copying build/lib/ilus/modules/utils/_check_config.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,924   copying build/lib/ilus/modules/utils/_check_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,926   copying build/lib/ilus/modules/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,927   copying build/lib/ilus/modules/utils/_check_input.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,929   copying build/lib/ilus/modules/utils/_utils.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,931   copying build/lib/ilus/modules/utils/_split_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:32:45,933   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2026-04-27T15:32:45,934   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-04-27T15:32:45,936   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-04-27T15:32:45,937   copying build/lib/ilus/modules/soapnuke.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:32:45,939   creating build/bdist.linux-armv7l/wheel/ilus/launch
2026-04-27T15:32:45,940   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:32:45,942   copying build/lib/ilus/launch/do.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:32:45,944   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:32:45,946   running install_egg_info
2026-04-27T15:32:45,980   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/./ilus-2.0.2-py3.11.egg-info
2026-04-27T15:32:45,991   running install_scripts
2026-04-27T15:32:46,004   creating build/bdist.linux-armv7l/wheel/ilus-2.0.2.dist-info/WHEEL
2026-04-27T15:32:46,006   creating '/tmp/pip-wheel-tsa2xwxh/ilus-2.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-27T15:32:46,008   adding 'ilus/__init__.py'
2026-04-27T15:32:46,010   adding 'ilus/main.py'
2026-04-27T15:32:46,012   adding 'ilus/launch/__init__.py'
2026-04-27T15:32:46,013   adding 'ilus/launch/do.py'
2026-04-27T15:32:46,016   adding 'ilus/launch/runfunction.py'
2026-04-27T15:32:46,018   adding 'ilus/modules/__init__.py'
2026-04-27T15:32:46,019   adding 'ilus/modules/bcftools.py'
2026-04-27T15:32:46,021   adding 'ilus/modules/bwa.py'
2026-04-27T15:32:46,023   adding 'ilus/modules/gatk.py'
2026-04-27T15:32:46,025   adding 'ilus/modules/sentieon.py'
2026-04-27T15:32:46,026   adding 'ilus/modules/soapnuke.py'
2026-04-27T15:32:46,028   adding 'ilus/modules/summary/__init__.py'
2026-04-27T15:32:46,030   adding 'ilus/modules/summary/bam.py'
2026-04-27T15:32:46,032   adding 'ilus/modules/utils/__init__.py'
2026-04-27T15:32:46,033   adding 'ilus/modules/utils/_check_config.py'
2026-04-27T15:32:46,035   adding 'ilus/modules/utils/_check_input.py'
2026-04-27T15:32:46,036   adding 'ilus/modules/utils/_check_jobs.py'
2026-04-27T15:32:46,037   adding 'ilus/modules/utils/_split_jobs.py'
2026-04-27T15:32:46,039   adding 'ilus/modules/utils/_utils.py'
2026-04-27T15:32:46,041   adding 'ilus/pipeline/__init__.py'
2026-04-27T15:32:46,042   adding 'ilus/pipeline/_command_args.py'
2026-04-27T15:32:46,044   adding 'ilus/pipeline/_germline_short_variant_discovery.py'
2026-04-27T15:32:46,052   adding 'ilus-2.0.2.dist-info/licenses/LICENSE'
2026-04-27T15:32:46,056   adding 'ilus-2.0.2.dist-info/METADATA'
2026-04-27T15:32:46,060   adding 'ilus-2.0.2.dist-info/WHEEL'
2026-04-27T15:32:46,061   adding 'ilus-2.0.2.dist-info/entry_points.txt'
2026-04-27T15:32:46,062   adding 'ilus-2.0.2.dist-info/top_level.txt'
2026-04-27T15:32:46,064   adding 'ilus-2.0.2.dist-info/RECORD'
2026-04-27T15:32:46,066   removing build/bdist.linux-armv7l/wheel
2026-04-27T15:32:46,183   Building wheel for ilus (setup.py): finished with status 'done'
2026-04-27T15:32:46,186   Created wheel for ilus: filename=ilus-2.0.2-py3-none-any.whl size=54142 sha256=fc85d10e7483995b3f104d1f3d421227fc769dcd530df78ac1e7d3d89b3631c2
2026-04-27T15:32:46,187   Stored in directory: /tmp/pip-ephem-wheel-cache-dk8rkawa/wheels/2f/9c/05/404457ac9ae245332a6d5f8ea96c6e1a4476b237fe273eb795
2026-04-27T15:32:46,204 Successfully built ilus
2026-04-27T15:32:46,208 Removed build tracker: '/tmp/pip-build-tracker-hto5ced6'