2026-04-27T15:59:06,425 Created temporary directory: /tmp/pip-ephem-wheel-cache-lhs1lvy6
2026-04-27T15:59:06,427 Created temporary directory: /tmp/pip-build-tracker-ikyb5c_c
2026-04-27T15:59:06,428 Initialized build tracking at /tmp/pip-build-tracker-ikyb5c_c
2026-04-27T15:59:06,428 Created build tracker: /tmp/pip-build-tracker-ikyb5c_c
2026-04-27T15:59:06,429 Entered build tracker: /tmp/pip-build-tracker-ikyb5c_c
2026-04-27T15:59:06,430 Created temporary directory: /tmp/pip-wheel-s7sh6bga
2026-04-27T15:59:06,432 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-27T15:59:06,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-883h9_cs
2026-04-27T15:59:06,456 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-27T15:59:06,460 2 location(s) to search for versions of ilus:
2026-04-27T15:59:06,460 * https://pypi.org/simple/ilus/
2026-04-27T15:59:06,460 * https://www.piwheels.org/simple/ilus/
2026-04-27T15:59:06,460 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2026-04-27T15:59:06,461 Getting page https://pypi.org/simple/ilus/
2026-04-27T15:59:06,462 Found index url https://pypi.org/simple
2026-04-27T15:59:06,696 Fetched page https://pypi.org/simple/ilus/ as application/vnd.pypi.simple.v1+json
2026-04-27T15:59:06,700   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 0.1.0
2026-04-27T15:59:06,700   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.0
2026-04-27T15:59:06,701   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.1
2026-04-27T15:59:06,702   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.2
2026-04-27T15:59:06,703   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.3
2026-04-27T15:59:06,703   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.4
2026-04-27T15:59:06,704   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.0
2026-04-27T15:59:06,705   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.1
2026-04-27T15:59:06,706   Found link https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.1
2026-04-27T15:59:06,706   Found link https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.2
2026-04-27T15:59:06,707   Found link https://files.pythonhosted.org/packages/02/09/b4d9c429ed8e64f724b62efb78121803f65a3f90e02d15b45873166b1ccb/ilus-1.3.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.0
2026-04-27T15:59:06,708   Found link https://files.pythonhosted.org/packages/37/55/b19f8e151ea4fa9c133ba6d2c24943b15151b024b5bc7061e697b735e684/ilus-1.3.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.1
2026-04-27T15:59:06,709   Found link https://files.pythonhosted.org/packages/ca/da/e63844784ebb375cd530002de641ccc8a2abd8e95fa441516118c2bf1dea/ilus-1.3.2.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 1.3.2
2026-04-27T15:59:06,710   Found link https://files.pythonhosted.org/packages/a9/f5/39b3283f53318f349c8b722df8c91f6e316cd8ba20d8393a851118133d5a/ilus-2.0.0.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.0
2026-04-27T15:59:06,711   Found link https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.1
2026-04-27T15:59:06,711   Found link https://files.pythonhosted.org/packages/58/04/47a2e72eeec499aa8eb80ac8290605834aa3aadb99e63fb1ab095719fec8/ilus-2.0.2.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.2
2026-04-27T15:59:06,712   Found link https://files.pythonhosted.org/packages/45/81/d9bddfe3ea4c1000e299a284cfd70d04b17c24327fabccb7a4ed84fdaf79/ilus-2.0.3.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.3
2026-04-27T15:59:06,713   Found link https://files.pythonhosted.org/packages/94/ff/9e14193f3fcd9d564e94e26d618551c719bf1154da9892556226e93c9a5c/ilus-2.0.4.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.4
2026-04-27T15:59:06,714 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2026-04-27T15:59:06,715 Getting page https://www.piwheels.org/simple/ilus/
2026-04-27T15:59:06,716 Found index url https://www.piwheels.org/simple
2026-04-27T15:59:06,887 Fetched page https://www.piwheels.org/simple/ilus/ as text/html
2026-04-27T15:59:06,892   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-2.0.3-py3-none-any.whl#sha256=0d6c72d65738d4a5dbf7e94b10474e4ca6093cdb9ea3e1cb2c2aab7a5467b5be (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:59:06,893   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-2.0.2-py3-none-any.whl#sha256=fc85d10e7483995b3f104d1f3d421227fc769dcd530df78ac1e7d3d89b3631c2 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:59:06,894   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-2.0.1-py3-none-any.whl#sha256=936302441227e28299029bb1accbbfaba83b1492fd3cba9574d1c98b951dc676 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:59:06,894   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-2.0.0-py3-none-any.whl#sha256=3ff0bdf5861ce49860d50b14e8c41b3662bc37b4313e3bc43116854776dc9382 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:59:06,895   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.2-py3-none-any.whl#sha256=6d315e8e8de0712c852788a1f124af02f5ccd5763b5d7210b937466f1a466365 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-04-27T15:59:06,896   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.1-py3-none-any.whl#sha256=95994f378ecd3614fbaa5acf6972cc8bfaca26a138d2bb6953332d7e1d188abe (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,896   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.0-py3-none-any.whl#sha256=86f3cfa3b4075f80f64038efd70c6b4dcc9b2e92dd73740e90c438fbf17e6402 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,897   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.2-py3-none-any.whl#sha256=57d5cc7a4de501b9759687f303a8ce24dee56a6bf3f469cdf8f34eedfbd5e3d6 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,897   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.1-py3-none-any.whl#sha256=b35d6734ffaccb93bea222efb586b94c5e948e69b9410862e345c77db351eedb (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,898   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.1-py3-none-any.whl#sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,899   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,899   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,900   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,900   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,900   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2026-04-27T15:59:06,901 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2026-04-27T15:59:06,901 Skipping link: not a file: https://pypi.org/simple/ilus/
2026-04-27T15:59:06,924 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2026-04-27T15:59:06,943 Collecting ilus==2.0.4
2026-04-27T15:59:06,945   Created temporary directory: /tmp/pip-unpack-qd6npb6s
2026-04-27T15:59:07,170   Downloading ilus-2.0.4.tar.gz (58 kB)
2026-04-27T15:59:07,283   Added ilus==2.0.4 from https://files.pythonhosted.org/packages/94/ff/9e14193f3fcd9d564e94e26d618551c719bf1154da9892556226e93c9a5c/ilus-2.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-ikyb5c_c'
2026-04-27T15:59:07,285   Running setup.py (path:/tmp/pip-wheel-s7sh6bga/ilus_438b287ace4045e3a1df21ea8fd084ce/setup.py) egg_info for package ilus
2026-04-27T15:59:07,286   Created temporary directory: /tmp/pip-pip-egg-info-846usycf
2026-04-27T15:59:07,287   Preparing metadata (setup.py): started
2026-04-27T15:59:07,288   Running command python setup.py egg_info
2026-04-27T15:59:08,175   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-27T15:59:08,175   !!

2026-04-27T15:59:08,176           ********************************************************************************
2026-04-27T15:59:08,177           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-27T15:59:08,178           License :: OSI Approved :: BSD License

2026-04-27T15:59:08,179           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-27T15:59:08,180           ********************************************************************************

2026-04-27T15:59:08,181   !!
2026-04-27T15:59:08,182     self._finalize_license_expression()
2026-04-27T15:59:08,206   running egg_info
2026-04-27T15:59:08,234   creating /tmp/pip-pip-egg-info-846usycf/ilus.egg-info
2026-04-27T15:59:08,235   writing /tmp/pip-pip-egg-info-846usycf/ilus.egg-info/PKG-INFO
2026-04-27T15:59:08,239   writing dependency_links to /tmp/pip-pip-egg-info-846usycf/ilus.egg-info/dependency_links.txt
2026-04-27T15:59:08,240   writing entry points to /tmp/pip-pip-egg-info-846usycf/ilus.egg-info/entry_points.txt
2026-04-27T15:59:08,242   writing requirements to /tmp/pip-pip-egg-info-846usycf/ilus.egg-info/requires.txt
2026-04-27T15:59:08,243   writing top-level names to /tmp/pip-pip-egg-info-846usycf/ilus.egg-info/top_level.txt
2026-04-27T15:59:08,245   writing manifest file '/tmp/pip-pip-egg-info-846usycf/ilus.egg-info/SOURCES.txt'
2026-04-27T15:59:08,339   reading manifest file '/tmp/pip-pip-egg-info-846usycf/ilus.egg-info/SOURCES.txt'
2026-04-27T15:59:08,340   adding license file 'LICENSE'
2026-04-27T15:59:08,343   writing manifest file '/tmp/pip-pip-egg-info-846usycf/ilus.egg-info/SOURCES.txt'
2026-04-27T15:59:08,450   Preparing metadata (setup.py): finished with status 'done'
2026-04-27T15:59:08,456   Source in /tmp/pip-wheel-s7sh6bga/ilus_438b287ace4045e3a1df21ea8fd084ce has version 2.0.4, which satisfies requirement ilus==2.0.4 from https://files.pythonhosted.org/packages/94/ff/9e14193f3fcd9d564e94e26d618551c719bf1154da9892556226e93c9a5c/ilus-2.0.4.tar.gz
2026-04-27T15:59:08,457   Removed ilus==2.0.4 from https://files.pythonhosted.org/packages/94/ff/9e14193f3fcd9d564e94e26d618551c719bf1154da9892556226e93c9a5c/ilus-2.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-ikyb5c_c'
2026-04-27T15:59:08,467 Created temporary directory: /tmp/pip-unpack-ucuiu358
2026-04-27T15:59:08,468 Building wheels for collected packages: ilus
2026-04-27T15:59:08,472   Created temporary directory: /tmp/pip-wheel-brxrup6i
2026-04-27T15:59:08,473   Building wheel for ilus (setup.py): started
2026-04-27T15:59:08,474   Destination directory: /tmp/pip-wheel-brxrup6i
2026-04-27T15:59:08,474   Running command python setup.py bdist_wheel
2026-04-27T15:59:09,320   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-27T15:59:09,320   !!

2026-04-27T15:59:09,321           ********************************************************************************
2026-04-27T15:59:09,322           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-27T15:59:09,323           License :: OSI Approved :: BSD License

2026-04-27T15:59:09,325           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-27T15:59:09,325           ********************************************************************************

2026-04-27T15:59:09,326   !!
2026-04-27T15:59:09,327     self._finalize_license_expression()
2026-04-27T15:59:09,327   running bdist_wheel
2026-04-27T15:59:09,456   running build
2026-04-27T15:59:09,457   running build_py
2026-04-27T15:59:09,490   creating build/lib/ilus
2026-04-27T15:59:09,492   copying ilus/__init__.py -> build/lib/ilus
2026-04-27T15:59:09,494   copying ilus/main.py -> build/lib/ilus
2026-04-27T15:59:09,497   creating build/lib/ilus/modules
2026-04-27T15:59:09,498   copying ilus/modules/bcftools.py -> build/lib/ilus/modules
2026-04-27T15:59:09,500   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2026-04-27T15:59:09,501   copying ilus/modules/soapnuke.py -> build/lib/ilus/modules
2026-04-27T15:59:09,503   copying ilus/modules/gatk.py -> build/lib/ilus/modules
2026-04-27T15:59:09,506   copying ilus/modules/sentieon.py -> build/lib/ilus/modules
2026-04-27T15:59:09,509   copying ilus/modules/bwa.py -> build/lib/ilus/modules
2026-04-27T15:59:09,511   creating build/lib/ilus/launch
2026-04-27T15:59:09,512   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2026-04-27T15:59:09,515   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2026-04-27T15:59:09,517   copying ilus/launch/do.py -> build/lib/ilus/launch
2026-04-27T15:59:09,519   creating build/lib/ilus/pipeline
2026-04-27T15:59:09,520   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2026-04-27T15:59:09,523   copying ilus/pipeline/_germline_short_variant_discovery.py -> build/lib/ilus/pipeline
2026-04-27T15:59:09,525   copying ilus/pipeline/_command_args.py -> build/lib/ilus/pipeline
2026-04-27T15:59:09,528   creating build/lib/ilus/modules/utils
2026-04-27T15:59:09,529   copying ilus/modules/utils/_utils.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,531   copying ilus/modules/utils/_check_input.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,533   copying ilus/modules/utils/__init__.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,535   copying ilus/modules/utils/_check_jobs.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,537   copying ilus/modules/utils/_split_jobs.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,538   copying ilus/modules/utils/_check_config.py -> build/lib/ilus/modules/utils
2026-04-27T15:59:09,541   creating build/lib/ilus/modules/summary
2026-04-27T15:59:09,542   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2026-04-27T15:59:09,543   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2026-04-27T15:59:09,545   running egg_info
2026-04-27T15:59:09,573   writing ilus.egg-info/PKG-INFO
2026-04-27T15:59:09,577   writing dependency_links to ilus.egg-info/dependency_links.txt
2026-04-27T15:59:09,578   writing entry points to ilus.egg-info/entry_points.txt
2026-04-27T15:59:09,580   writing requirements to ilus.egg-info/requires.txt
2026-04-27T15:59:09,581   writing top-level names to ilus.egg-info/top_level.txt
2026-04-27T15:59:09,617   reading manifest file 'ilus.egg-info/SOURCES.txt'
2026-04-27T15:59:09,620   adding license file 'LICENSE'
2026-04-27T15:59:09,624   writing manifest file 'ilus.egg-info/SOURCES.txt'
2026-04-27T15:59:09,657   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-04-27T15:59:09,658   !!

2026-04-27T15:59:09,659           ********************************************************************************
2026-04-27T15:59:09,660           Please avoid running ``setup.py`` directly.
2026-04-27T15:59:09,660           Instead, use pypa/build, pypa/installer or other
2026-04-27T15:59:09,661           standards-based tools.

2026-04-27T15:59:09,662           This deprecation is overdue, please update your project and remove deprecated
2026-04-27T15:59:09,662           calls to avoid build errors in the future.

2026-04-27T15:59:09,663           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-04-27T15:59:09,664           ********************************************************************************

2026-04-27T15:59:09,665   !!
2026-04-27T15:59:09,666     self.initialize_options()
2026-04-27T15:59:09,686   installing to build/bdist.linux-armv7l/wheel
2026-04-27T15:59:09,687   running install
2026-04-27T15:59:09,710   running install_lib
2026-04-27T15:59:09,737   creating build/bdist.linux-armv7l/wheel
2026-04-27T15:59:09,739   creating build/bdist.linux-armv7l/wheel/ilus
2026-04-27T15:59:09,741   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-04-27T15:59:09,743   creating build/bdist.linux-armv7l/wheel/ilus/modules
2026-04-27T15:59:09,744   copying build/lib/ilus/modules/bcftools.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,746   creating build/bdist.linux-armv7l/wheel/ilus/modules/utils
2026-04-27T15:59:09,747   copying build/lib/ilus/modules/utils/_utils.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,749   copying build/lib/ilus/modules/utils/_check_input.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,751   copying build/lib/ilus/modules/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,753   copying build/lib/ilus/modules/utils/_check_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,755   copying build/lib/ilus/modules/utils/_split_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,757   copying build/lib/ilus/modules/utils/_check_config.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-04-27T15:59:09,759   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,760   copying build/lib/ilus/modules/soapnuke.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,762   copying build/lib/ilus/modules/gatk.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,764   copying build/lib/ilus/modules/sentieon.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,767   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2026-04-27T15:59:09,768   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-04-27T15:59:09,770   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-04-27T15:59:09,772   copying build/lib/ilus/modules/bwa.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-04-27T15:59:09,774   creating build/bdist.linux-armv7l/wheel/ilus/launch
2026-04-27T15:59:09,775   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:59:09,778   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:59:09,780   copying build/lib/ilus/launch/do.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-04-27T15:59:09,782   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-04-27T15:59:09,785   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2026-04-27T15:59:09,786   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:59:09,788   copying build/lib/ilus/pipeline/_germline_short_variant_discovery.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:59:09,790   copying build/lib/ilus/pipeline/_command_args.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-04-27T15:59:09,792   running install_egg_info
2026-04-27T15:59:09,829   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/./ilus-2.0.4-py3.11.egg-info
2026-04-27T15:59:09,842   running install_scripts
2026-04-27T15:59:09,857   creating build/bdist.linux-armv7l/wheel/ilus-2.0.4.dist-info/WHEEL
2026-04-27T15:59:09,860   creating '/tmp/pip-wheel-brxrup6i/ilus-2.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-27T15:59:09,862   adding 'ilus/__init__.py'
2026-04-27T15:59:09,864   adding 'ilus/main.py'
2026-04-27T15:59:09,866   adding 'ilus/launch/__init__.py'
2026-04-27T15:59:09,867   adding 'ilus/launch/do.py'
2026-04-27T15:59:09,870   adding 'ilus/launch/runfunction.py'
2026-04-27T15:59:09,873   adding 'ilus/modules/__init__.py'
2026-04-27T15:59:09,874   adding 'ilus/modules/bcftools.py'
2026-04-27T15:59:09,875   adding 'ilus/modules/bwa.py'
2026-04-27T15:59:09,877   adding 'ilus/modules/gatk.py'
2026-04-27T15:59:09,880   adding 'ilus/modules/sentieon.py'
2026-04-27T15:59:09,881   adding 'ilus/modules/soapnuke.py'
2026-04-27T15:59:09,883   adding 'ilus/modules/summary/__init__.py'
2026-04-27T15:59:09,885   adding 'ilus/modules/summary/bam.py'
2026-04-27T15:59:09,886   adding 'ilus/modules/utils/__init__.py'
2026-04-27T15:59:09,888   adding 'ilus/modules/utils/_check_config.py'
2026-04-27T15:59:09,889   adding 'ilus/modules/utils/_check_input.py'
2026-04-27T15:59:09,890   adding 'ilus/modules/utils/_check_jobs.py'
2026-04-27T15:59:09,892   adding 'ilus/modules/utils/_split_jobs.py'
2026-04-27T15:59:09,893   adding 'ilus/modules/utils/_utils.py'
2026-04-27T15:59:09,895   adding 'ilus/pipeline/__init__.py'
2026-04-27T15:59:09,897   adding 'ilus/pipeline/_command_args.py'
2026-04-27T15:59:09,899   adding 'ilus/pipeline/_germline_short_variant_discovery.py'
2026-04-27T15:59:09,906   adding 'ilus-2.0.4.dist-info/licenses/LICENSE'
2026-04-27T15:59:09,910   adding 'ilus-2.0.4.dist-info/METADATA'
2026-04-27T15:59:09,912   adding 'ilus-2.0.4.dist-info/WHEEL'
2026-04-27T15:59:09,913   adding 'ilus-2.0.4.dist-info/entry_points.txt'
2026-04-27T15:59:09,914   adding 'ilus-2.0.4.dist-info/top_level.txt'
2026-04-27T15:59:09,915   adding 'ilus-2.0.4.dist-info/RECORD'
2026-04-27T15:59:09,917   removing build/bdist.linux-armv7l/wheel
2026-04-27T15:59:10,036   Building wheel for ilus (setup.py): finished with status 'done'
2026-04-27T15:59:10,041   Created wheel for ilus: filename=ilus-2.0.4-py3-none-any.whl size=54293 sha256=bd769adfd578135273341e180e0edbd3fe9486d216e65dd552317754f3567ee1
2026-04-27T15:59:10,042   Stored in directory: /tmp/pip-ephem-wheel-cache-883h9_cs/wheels/4b/0d/47/4e37c27cf7ea4ae7cc2a6306158fe876ec02af40863805a3c0
2026-04-27T15:59:10,058 Successfully built ilus
2026-04-27T15:59:10,063 Removed build tracker: '/tmp/pip-build-tracker-ikyb5c_c'