2026-04-28T02:18:09,159 Created temporary directory: /tmp/pip-ephem-wheel-cache-9jgdp3ar 2026-04-28T02:18:09,161 Created temporary directory: /tmp/pip-build-tracker-6bf0x9nz 2026-04-28T02:18:09,161 Initialized build tracking at /tmp/pip-build-tracker-6bf0x9nz 2026-04-28T02:18:09,162 Created build tracker: /tmp/pip-build-tracker-6bf0x9nz 2026-04-28T02:18:09,162 Entered build tracker: /tmp/pip-build-tracker-6bf0x9nz 2026-04-28T02:18:09,163 Created temporary directory: /tmp/pip-wheel-hz9q38dz 2026-04-28T02:18:09,166 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-28T02:18:09,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-4rhhm_55 2026-04-28T02:18:09,191 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-28T02:18:09,195 2 location(s) to search for versions of meds-transforms: 2026-04-28T02:18:09,195 * https://pypi.org/simple/meds-transforms/ 2026-04-28T02:18:09,195 * https://www.piwheels.org/simple/meds-transforms/ 2026-04-28T02:18:09,196 Fetching project page and analyzing links: https://pypi.org/simple/meds-transforms/ 2026-04-28T02:18:09,197 Getting page https://pypi.org/simple/meds-transforms/ 2026-04-28T02:18:09,198 Found index url https://pypi.org/simple 2026-04-28T02:18:09,427 Fetched page https://pypi.org/simple/meds-transforms/ as application/vnd.pypi.simple.v1+json 2026-04-28T02:18:09,440 Skipping link: No binaries permitted for meds-transforms: 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https://files.pythonhosted.org/packages/c3/a3/7633c147ea2bc5267afd5654167d7a92295502ef01235708bd6a2948f283/meds_transforms-0.6.5-py3-none-any.whl (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,496 Found link https://files.pythonhosted.org/packages/0e/f6/ad4ac330a1d39c3260b42cd78bb8d52016c95d8ea12a030a8bc7f4d1bc03/meds_transforms-0.6.5.tar.gz (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11), version: 0.6.5 2026-04-28T02:18:09,497 Skipping link: No binaries permitted for meds-transforms: https://files.pythonhosted.org/packages/72/48/aa55a7b098c8ed2aefd7dd175142009a030aad48000bafed8f2043af3250/meds_transforms-0.6.6-py3-none-any.whl (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,497 Found link https://files.pythonhosted.org/packages/5f/fe/9fed40951e17a120837123b526a9097855d4a5317bccc776f534351e7c29/meds_transforms-0.6.6.tar.gz (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11), version: 0.6.6 2026-04-28T02:18:09,498 Skipping link: No binaries permitted for meds-transforms: https://files.pythonhosted.org/packages/40/19/55d217de368c7fb643f89f7ef312092740c24c189f75ec28d7c68b0b1dbd/meds_transforms-0.6.7-py3-none-any.whl (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,499 Found link https://files.pythonhosted.org/packages/b4/19/407efdafc8adbb8385495579934d88fdf8c5c8373fc2e76026fe0b54e26d/meds_transforms-0.6.7.tar.gz (from https://pypi.org/simple/meds-transforms/) (requires-python:>=3.11), version: 0.6.7 2026-04-28T02:18:09,500 Fetching project page and analyzing links: https://www.piwheels.org/simple/meds-transforms/ 2026-04-28T02:18:09,501 Getting page https://www.piwheels.org/simple/meds-transforms/ 2026-04-28T02:18:09,502 Found index url https://www.piwheels.org/simple 2026-04-28T02:18:09,675 Fetched page https://www.piwheels.org/simple/meds-transforms/ as text/html 2026-04-28T02:18:09,685 Skipping link: No binaries permitted for meds-transforms: https://www.piwheels.org/simple/meds-transforms/meds_transforms-0.6.7-py3-none-any.whl#sha256=98dc2d75cfd4cd20199f6ae9c7e4825e98a2cd459db91e712940ec5d000cde18 (from https://www.piwheels.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,685 Skipping link: No binaries permitted for meds-transforms: https://www.piwheels.org/simple/meds-transforms/meds_transforms-0.6.6-py3-none-any.whl#sha256=2c644e7dad3d13e624d332ebf0a385611175f4874c9a5cbcd6e93a8f2414f61a (from https://www.piwheels.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,686 Skipping link: No binaries permitted for meds-transforms: https://www.piwheels.org/simple/meds-transforms/meds_transforms-0.6.5-py3-none-any.whl#sha256=cc699a88185861e08bf08ff617f85c3e99a969b088376c89528c0408f3857378 (from https://www.piwheels.org/simple/meds-transforms/) (requires-python:>=3.11) 2026-04-28T02:18:09,686 Skipping link: No binaries 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/tmp/pip-unpack-myb62b3l 2026-04-28T02:18:09,897 Downloading meds_transforms-0.5.4.tar.gz (332 kB) 2026-04-28T02:18:10,381 Added meds-transforms==0.5.4 from https://files.pythonhosted.org/packages/96/4d/0b906c51180b9d1be80b32a46236926ef424e0ec2f5ecdf170ea1fcd5c1a/meds_transforms-0.5.4.tar.gz to build tracker '/tmp/pip-build-tracker-6bf0x9nz' 2026-04-28T02:18:10,389 Created temporary directory: /tmp/pip-build-env-yqocdprb 2026-04-28T02:18:10,394 Installing build dependencies: started 2026-04-28T02:18:10,395 Running command pip subprocess to install build dependencies 2026-04-28T02:18:11,560 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-28T02:18:12,015 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-28T02:18:12,039 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-28T02:18:13,804 Collecting setuptools>=64 2026-04-28T02:18:13,886 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-28T02:18:14,263 Collecting setuptools-scm>=8.0 2026-04-28T02:18:14,279 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-28T02:18:14,521 Collecting wheel 2026-04-28T02:18:14,537 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-04-28T02:18:14,621 Collecting vcs-versioning>=1.0.0.dev0 2026-04-28T02:18:14,638 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-28T02:18:14,824 Collecting packaging>=20 2026-04-28T02:18:14,841 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-04-28T02:18:17,876 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools-scm 2026-04-28T02:18:21,425 Creating /tmp/pip-build-env-yqocdprb/overlay/local/bin 2026-04-28T02:18:21,427 changing mode of /tmp/pip-build-env-yqocdprb/overlay/local/bin/wheel to 755 2026-04-28T02:18:21,747 changing mode of /tmp/pip-build-env-yqocdprb/overlay/local/bin/vcs-versioning to 755 2026-04-28T02:18:21,864 changing mode of /tmp/pip-build-env-yqocdprb/overlay/local/bin/setuptools-scm to 755 2026-04-28T02:18:21,899 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 wheel-0.47.0 2026-04-28T02:18:22,190 Installing build dependencies: finished with status 'done' 2026-04-28T02:18:22,197 Getting requirements to build wheel: started 2026-04-28T02:18:22,199 Running command Getting requirements to build wheel 2026-04-28T02:18:22,997 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:22,997 !! 2026-04-28T02:18:22,998 ******************************************************************************** 2026-04-28T02:18:22,999 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:23,000 License :: OSI Approved :: MIT License 2026-04-28T02:18:23,001 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:23,002 ******************************************************************************** 2026-04-28T02:18:23,003 !! 2026-04-28T02:18:23,003 dist._finalize_license_expression() 2026-04-28T02:18:23,004 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:23,004 !! 2026-04-28T02:18:23,005 ******************************************************************************** 2026-04-28T02:18:23,006 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:23,006 License :: OSI Approved :: MIT License 2026-04-28T02:18:23,007 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:23,008 ******************************************************************************** 2026-04-28T02:18:23,009 !! 2026-04-28T02:18:23,009 self._finalize_license_expression() 2026-04-28T02:18:23,036 running egg_info 2026-04-28T02:18:23,044 writing src/MEDS_transforms.egg-info/PKG-INFO 2026-04-28T02:18:23,052 writing dependency_links to src/MEDS_transforms.egg-info/dependency_links.txt 2026-04-28T02:18:23,054 writing entry points to src/MEDS_transforms.egg-info/entry_points.txt 2026-04-28T02:18:23,058 writing requirements to src/MEDS_transforms.egg-info/requires.txt 2026-04-28T02:18:23,059 writing top-level names to src/MEDS_transforms.egg-info/top_level.txt 2026-04-28T02:18:23,138 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T02:18:23,139 return get_active_overrides().subprocess_timeout 2026-04-28T02:18:23,147 listing git files failed - pretending there aren't any 2026-04-28T02:18:23,152 reading manifest file 'src/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:23,165 adding license file 'LICENSE' 2026-04-28T02:18:23,174 writing manifest file 'src/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:23,280 Getting requirements to build wheel: finished with status 'done' 2026-04-28T02:18:23,283 Created temporary directory: /tmp/pip-modern-metadata-uijjs5rm 2026-04-28T02:18:23,286 Preparing metadata (pyproject.toml): started 2026-04-28T02:18:23,287 Running command Preparing metadata (pyproject.toml) 2026-04-28T02:18:24,039 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:24,039 !! 2026-04-28T02:18:24,040 ******************************************************************************** 2026-04-28T02:18:24,041 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:24,042 License :: OSI Approved :: MIT License 2026-04-28T02:18:24,043 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:24,044 ******************************************************************************** 2026-04-28T02:18:24,045 !! 2026-04-28T02:18:24,045 dist._finalize_license_expression() 2026-04-28T02:18:24,046 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:24,047 !! 2026-04-28T02:18:24,048 ******************************************************************************** 2026-04-28T02:18:24,048 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:24,050 License :: OSI Approved :: MIT License 2026-04-28T02:18:24,051 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:24,052 ******************************************************************************** 2026-04-28T02:18:24,053 !! 2026-04-28T02:18:24,053 self._finalize_license_expression() 2026-04-28T02:18:24,070 running dist_info 2026-04-28T02:18:24,083 creating /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info 2026-04-28T02:18:24,084 writing /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/PKG-INFO 2026-04-28T02:18:24,092 writing dependency_links to /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/dependency_links.txt 2026-04-28T02:18:24,094 writing entry points to /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/entry_points.txt 2026-04-28T02:18:24,098 writing requirements to /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/requires.txt 2026-04-28T02:18:24,099 writing top-level names to /tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/top_level.txt 2026-04-28T02:18:24,100 writing manifest file '/tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:24,169 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T02:18:24,170 return get_active_overrides().subprocess_timeout 2026-04-28T02:18:24,176 listing git files failed - pretending there aren't any 2026-04-28T02:18:24,181 reading manifest file '/tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:24,183 adding license file 'LICENSE' 2026-04-28T02:18:24,188 writing manifest file '/tmp/pip-modern-metadata-uijjs5rm/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:24,190 creating '/tmp/pip-modern-metadata-uijjs5rm/meds_transforms-0.5.4.dist-info' 2026-04-28T02:18:24,326 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-28T02:18:24,331 Source in /tmp/pip-wheel-hz9q38dz/meds-transforms_6cebda52add041b4a96538b4684b3e54 has version 0.5.4, which satisfies requirement meds-transforms==0.5.4 from https://files.pythonhosted.org/packages/96/4d/0b906c51180b9d1be80b32a46236926ef424e0ec2f5ecdf170ea1fcd5c1a/meds_transforms-0.5.4.tar.gz 2026-04-28T02:18:24,332 Removed meds-transforms==0.5.4 from https://files.pythonhosted.org/packages/96/4d/0b906c51180b9d1be80b32a46236926ef424e0ec2f5ecdf170ea1fcd5c1a/meds_transforms-0.5.4.tar.gz from build tracker '/tmp/pip-build-tracker-6bf0x9nz' 2026-04-28T02:18:24,340 Created temporary directory: /tmp/pip-unpack-eqqgtd2b 2026-04-28T02:18:24,340 Building wheels for collected packages: meds-transforms 2026-04-28T02:18:24,345 Created temporary directory: /tmp/pip-wheel-hfamjul5 2026-04-28T02:18:24,345 Destination directory: /tmp/pip-wheel-hfamjul5 2026-04-28T02:18:24,348 Building wheel for meds-transforms (pyproject.toml): started 2026-04-28T02:18:24,349 Running command Building wheel for meds-transforms (pyproject.toml) 2026-04-28T02:18:25,062 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:25,062 !! 2026-04-28T02:18:25,063 ******************************************************************************** 2026-04-28T02:18:25,064 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:25,065 License :: OSI Approved :: MIT License 2026-04-28T02:18:25,066 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:25,067 ******************************************************************************** 2026-04-28T02:18:25,068 !! 2026-04-28T02:18:25,069 dist._finalize_license_expression() 2026-04-28T02:18:25,069 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-28T02:18:25,070 !! 2026-04-28T02:18:25,071 ******************************************************************************** 2026-04-28T02:18:25,071 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-28T02:18:25,072 License :: OSI Approved :: MIT License 2026-04-28T02:18:25,073 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-28T02:18:25,073 ******************************************************************************** 2026-04-28T02:18:25,074 !! 2026-04-28T02:18:25,074 self._finalize_license_expression() 2026-04-28T02:18:25,084 running bdist_wheel 2026-04-28T02:18:25,109 running build 2026-04-28T02:18:25,110 running build_py 2026-04-28T02:18:25,111 creating build/lib/MEDS_transforms 2026-04-28T02:18:25,114 copying src/MEDS_transforms/__main__.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,116 copying src/MEDS_transforms/parser.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,119 copying src/MEDS_transforms/__init__.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,121 copying src/MEDS_transforms/pytest_plugin.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,124 copying src/MEDS_transforms/runner.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,127 copying src/MEDS_transforms/utils.py -> build/lib/MEDS_transforms 2026-04-28T02:18:25,130 creating build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,130 copying src/MEDS_transforms/configs/__init__.py -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,133 copying src/MEDS_transforms/configs/dataset.py -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,135 copying src/MEDS_transforms/configs/pipeline.py -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,138 copying src/MEDS_transforms/configs/utils.py -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,140 copying src/MEDS_transforms/configs/stage.py -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,143 creating build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,144 copying src/MEDS_transforms/mapreduce/rwlock.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,147 copying src/MEDS_transforms/mapreduce/shard_iteration.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,149 copying src/MEDS_transforms/mapreduce/__init__.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,151 copying src/MEDS_transforms/mapreduce/mapper.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,153 copying src/MEDS_transforms/mapreduce/reducer.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,156 copying src/MEDS_transforms/mapreduce/stage.py -> build/lib/MEDS_transforms/mapreduce 2026-04-28T02:18:25,160 creating build/lib/MEDS_transforms/dataframe 2026-04-28T02:18:25,161 copying src/MEDS_transforms/dataframe/types.py -> build/lib/MEDS_transforms/dataframe 2026-04-28T02:18:25,163 copying src/MEDS_transforms/dataframe/read_fn.py -> build/lib/MEDS_transforms/dataframe 2026-04-28T02:18:25,165 copying src/MEDS_transforms/dataframe/write_fn.py -> build/lib/MEDS_transforms/dataframe 2026-04-28T02:18:25,167 copying src/MEDS_transforms/dataframe/__init__.py -> build/lib/MEDS_transforms/dataframe 2026-04-28T02:18:25,169 creating build/lib/MEDS_transforms/compute_modes 2026-04-28T02:18:25,170 copying src/MEDS_transforms/compute_modes/match_revise.py -> build/lib/MEDS_transforms/compute_modes 2026-04-28T02:18:25,173 copying src/MEDS_transforms/compute_modes/__init__.py -> build/lib/MEDS_transforms/compute_modes 2026-04-28T02:18:25,175 copying src/MEDS_transforms/compute_modes/compute_fn.py -> build/lib/MEDS_transforms/compute_modes 2026-04-28T02:18:25,178 creating build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,179 copying src/MEDS_transforms/stages/discovery.py -> build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,181 copying src/MEDS_transforms/stages/examples.py -> build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,184 copying src/MEDS_transforms/stages/__init__.py -> build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,186 copying src/MEDS_transforms/stages/base.py -> build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,190 creating build/lib/MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,191 copying src/MEDS_transforms/stages/filter_subjects/__init__.py -> build/lib/MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,193 copying src/MEDS_transforms/stages/filter_subjects/filter_subjects.py -> build/lib/MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,196 creating build/lib/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,197 copying src/MEDS_transforms/stages/occlude_outliers/__init__.py -> build/lib/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,199 copying src/MEDS_transforms/stages/occlude_outliers/occlude_outliers.py -> build/lib/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,202 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,203 copying src/MEDS_transforms/stages/aggregate_code_metadata/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,205 copying src/MEDS_transforms/stages/aggregate_code_metadata/aggregate_code_metadata.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,209 creating build/lib/MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,210 copying src/MEDS_transforms/stages/reorder_measurements/__init__.py -> build/lib/MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,212 copying src/MEDS_transforms/stages/reorder_measurements/reorder_measurements.py -> build/lib/MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,215 creating build/lib/MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,215 copying src/MEDS_transforms/stages/extract_values/__init__.py -> build/lib/MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,217 copying src/MEDS_transforms/stages/extract_values/extract_values.py -> build/lib/MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,220 creating build/lib/MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,221 copying src/MEDS_transforms/stages/bin_numeric_values/bin_numeric_values.py -> build/lib/MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,224 copying src/MEDS_transforms/stages/bin_numeric_values/__init__.py -> build/lib/MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,226 creating build/lib/MEDS_transforms/stages/normalization 2026-04-28T02:18:25,227 copying src/MEDS_transforms/stages/normalization/normalization.py -> build/lib/MEDS_transforms/stages/normalization 2026-04-28T02:18:25,230 copying src/MEDS_transforms/stages/normalization/__init__.py -> build/lib/MEDS_transforms/stages/normalization 2026-04-28T02:18:25,232 creating build/lib/MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,233 copying src/MEDS_transforms/stages/reshard_to_split/__init__.py -> build/lib/MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,235 copying src/MEDS_transforms/stages/reshard_to_split/reshard_to_split.py -> build/lib/MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,238 creating build/lib/MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:25,239 copying src/MEDS_transforms/stages/filter_measurements/__init__.py -> build/lib/MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:25,241 copying src/MEDS_transforms/stages/filter_measurements/filter_measurements.py -> build/lib/MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:25,244 creating build/lib/MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:25,245 copying src/MEDS_transforms/stages/fit_vocabulary_indices/__init__.py -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:25,246 copying src/MEDS_transforms/stages/fit_vocabulary_indices/fit_vocabulary_indices.py -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:25,250 creating build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,251 copying src/MEDS_transforms/stages/add_time_derived_measurements/add_time_derived_measurements.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,253 copying src/MEDS_transforms/stages/add_time_derived_measurements/timeline_tokens.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,256 copying src/MEDS_transforms/stages/add_time_derived_measurements/__init__.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,258 copying src/MEDS_transforms/stages/add_time_derived_measurements/time_of_day.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,260 copying src/MEDS_transforms/stages/add_time_derived_measurements/age.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,263 copying src/MEDS_transforms/stages/add_time_derived_measurements/utils.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,265 creating build/lib/MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,266 copying src/MEDS_transforms/stages/filter_subjects/examples/__init__.py -> build/lib/MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,269 creating build/lib/MEDS_transforms/stages/occlude_outliers/examples 2026-04-28T02:18:25,270 copying src/MEDS_transforms/stages/occlude_outliers/examples/__init__.py -> build/lib/MEDS_transforms/stages/occlude_outliers/examples 2026-04-28T02:18:25,272 creating build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,273 copying src/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/__init__.py -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,275 creating build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,276 copying src/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/__init__.py -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,278 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples 2026-04-28T02:18:25,279 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples 2026-04-28T02:18:25,281 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline 2026-04-28T02:18:25,282 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline 2026-04-28T02:18:25,285 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,286 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,288 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,289 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,291 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,292 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,295 creating build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,296 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/__init__.py -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,298 creating build/lib/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,299 copying src/MEDS_transforms/stages/reorder_measurements/examples/__init__.py -> build/lib/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,301 creating build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,302 copying src/MEDS_transforms/stages/extract_values/examples/__init__.py -> build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,304 creating build/lib/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,305 copying src/MEDS_transforms/stages/bin_numeric_values/examples/__init__.py -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,307 creating build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,308 copying src/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/__init__.py -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,310 creating build/lib/MEDS_transforms/stages/normalization/examples 2026-04-28T02:18:25,311 copying src/MEDS_transforms/stages/normalization/examples/__init__.py -> build/lib/MEDS_transforms/stages/normalization/examples 2026-04-28T02:18:25,313 creating build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,314 copying src/MEDS_transforms/stages/normalization/examples/in_example_pipeline/__init__.py -> build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,316 creating build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,317 copying src/MEDS_transforms/stages/normalization/examples/on_raw_static_data/__init__.py -> build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,319 creating build/lib/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,320 copying src/MEDS_transforms/stages/reshard_to_split/examples/__init__.py -> build/lib/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,322 creating build/lib/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:25,323 copying src/MEDS_transforms/stages/filter_measurements/examples/__init__.py -> build/lib/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:25,326 creating build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples 2026-04-28T02:18:25,327 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/__init__.py -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples 2026-04-28T02:18:25,329 creating build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:25,330 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/__init__.py -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:25,332 creating build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:25,333 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/__init__.py -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:25,335 creating build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples 2026-04-28T02:18:25,336 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/__init__.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples 2026-04-28T02:18:25,338 creating build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:25,339 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/__init__.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:25,342 creating build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:25,343 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/__init__.py -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:25,345 running egg_info 2026-04-28T02:18:25,358 writing src/MEDS_transforms.egg-info/PKG-INFO 2026-04-28T02:18:25,365 writing dependency_links to src/MEDS_transforms.egg-info/dependency_links.txt 2026-04-28T02:18:25,367 writing entry points to src/MEDS_transforms.egg-info/entry_points.txt 2026-04-28T02:18:25,370 writing requirements to src/MEDS_transforms.egg-info/requires.txt 2026-04-28T02:18:25,371 writing top-level names to src/MEDS_transforms.egg-info/top_level.txt 2026-04-28T02:18:25,433 /tmp/pip-build-env-yqocdprb/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T02:18:25,433 return get_active_overrides().subprocess_timeout 2026-04-28T02:18:25,439 listing git files failed - pretending there aren't any 2026-04-28T02:18:25,443 reading manifest file 'src/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:25,454 adding license file 'LICENSE' 2026-04-28T02:18:25,463 writing manifest file 'src/MEDS_transforms.egg-info/SOURCES.txt' 2026-04-28T02:18:25,490 copying src/MEDS_transforms/configs/_main.yaml -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,493 copying src/MEDS_transforms/configs/_runner.yaml -> build/lib/MEDS_transforms/configs 2026-04-28T02:18:25,495 copying src/MEDS_transforms/stages/README.md -> build/lib/MEDS_transforms/stages 2026-04-28T02:18:25,497 copying src/MEDS_transforms/stages/filter_subjects/config.yaml -> build/lib/MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,499 copying src/MEDS_transforms/stages/occlude_outliers/README.md -> build/lib/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,502 copying src/MEDS_transforms/stages/occlude_outliers/config.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,504 copying src/MEDS_transforms/stages/reorder_measurements/config.yaml -> build/lib/MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,506 copying src/MEDS_transforms/stages/bin_numeric_values/config.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,508 copying src/MEDS_transforms/stages/normalization/README.md -> build/lib/MEDS_transforms/stages/normalization 2026-04-28T02:18:25,510 copying src/MEDS_transforms/stages/reshard_to_split/config.yaml -> build/lib/MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,513 copying src/MEDS_transforms/stages/filter_measurements/config.yaml -> build/lib/MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:25,515 copying src/MEDS_transforms/stages/fit_vocabulary_indices/config.yaml -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:25,517 copying src/MEDS_transforms/stages/add_time_derived_measurements/README.md -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,519 copying src/MEDS_transforms/stages/add_time_derived_measurements/config.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:25,522 copying src/MEDS_transforms/stages/filter_subjects/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,524 copying src/MEDS_transforms/stages/filter_subjects/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,526 copying src/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/cfg.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,529 copying src/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/in.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,531 copying src/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/out_data.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,534 copying src/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/cfg.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,536 copying src/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/in.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,538 copying src/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/out_data.yaml -> build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,540 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,543 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,545 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/out_metadata.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,548 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,550 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,552 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/in.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,554 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/out_metadata.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,557 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,559 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,562 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/in.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,564 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/out_metadata.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,567 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,569 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/cfg.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,571 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/in.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,574 copying src/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/out_metadata.yaml -> build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,576 copying src/MEDS_transforms/stages/reorder_measurements/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,578 copying src/MEDS_transforms/stages/reorder_measurements/examples/in.yaml -> build/lib/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,580 copying src/MEDS_transforms/stages/reorder_measurements/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,583 copying src/MEDS_transforms/stages/extract_values/examples/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,585 copying src/MEDS_transforms/stages/extract_values/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,587 copying src/MEDS_transforms/stages/extract_values/examples/in.yaml -> build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,589 copying src/MEDS_transforms/stages/extract_values/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,591 copying src/MEDS_transforms/stages/bin_numeric_values/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,593 copying src/MEDS_transforms/stages/bin_numeric_values/examples/in.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,596 copying src/MEDS_transforms/stages/bin_numeric_values/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,598 copying src/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/cfg.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,600 copying src/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/custom_bins.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,602 copying src/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/in.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,605 copying src/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/out_data.yaml -> build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,607 copying src/MEDS_transforms/stages/normalization/examples/in_example_pipeline/in.yaml -> build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,609 copying src/MEDS_transforms/stages/normalization/examples/in_example_pipeline/out_data.yaml -> build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,612 copying src/MEDS_transforms/stages/normalization/examples/on_raw_static_data/in.yaml -> build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,614 copying src/MEDS_transforms/stages/normalization/examples/on_raw_static_data/out_data.yaml -> build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,616 copying src/MEDS_transforms/stages/reshard_to_split/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,618 copying src/MEDS_transforms/stages/reshard_to_split/examples/in.yaml -> build/lib/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,621 copying src/MEDS_transforms/stages/reshard_to_split/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,623 copying src/MEDS_transforms/stages/filter_measurements/examples/cfg.yaml -> build/lib/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:25,625 copying src/MEDS_transforms/stages/filter_measurements/examples/in.yaml -> build/lib/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:25,627 copying src/MEDS_transforms/stages/filter_measurements/examples/out_data.yaml -> build/lib/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:25,629 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/in.yaml -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:25,632 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/out_metadata.yaml -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:25,634 copying src/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/out_metadata.yaml -> build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:25,637 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/cfg.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:25,639 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/in.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:25,642 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/out_data.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:25,644 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/_test_cfg.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:25,647 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/cfg.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:25,649 copying src/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/out_data.yaml -> build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:25,681 installing to build/bdist.linux-armv7l/wheel 2026-04-28T02:18:25,681 running install 2026-04-28T02:18:25,704 running install_lib 2026-04-28T02:18:25,711 creating build/bdist.linux-armv7l/wheel 2026-04-28T02:18:25,713 creating build/bdist.linux-armv7l/wheel/MEDS_transforms 2026-04-28T02:18:25,715 copying build/lib/MEDS_transforms/__main__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,717 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/configs 2026-04-28T02:18:25,718 copying build/lib/MEDS_transforms/configs/_runner.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,720 copying build/lib/MEDS_transforms/configs/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,722 copying build/lib/MEDS_transforms/configs/dataset.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,724 copying build/lib/MEDS_transforms/configs/pipeline.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,726 copying build/lib/MEDS_transforms/configs/_main.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,728 copying build/lib/MEDS_transforms/configs/utils.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,731 copying build/lib/MEDS_transforms/configs/stage.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/configs 2026-04-28T02:18:25,733 copying build/lib/MEDS_transforms/parser.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,736 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/mapreduce 2026-04-28T02:18:25,737 copying build/lib/MEDS_transforms/mapreduce/rwlock.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,739 copying build/lib/MEDS_transforms/mapreduce/shard_iteration.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,742 copying build/lib/MEDS_transforms/mapreduce/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,744 copying build/lib/MEDS_transforms/mapreduce/mapper.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,746 copying build/lib/MEDS_transforms/mapreduce/reducer.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,748 copying build/lib/MEDS_transforms/mapreduce/stage.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/mapreduce 2026-04-28T02:18:25,751 copying build/lib/MEDS_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,753 copying build/lib/MEDS_transforms/pytest_plugin.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,756 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/dataframe 2026-04-28T02:18:25,757 copying build/lib/MEDS_transforms/dataframe/types.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/dataframe 2026-04-28T02:18:25,759 copying build/lib/MEDS_transforms/dataframe/read_fn.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/dataframe 2026-04-28T02:18:25,761 copying build/lib/MEDS_transforms/dataframe/write_fn.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/dataframe 2026-04-28T02:18:25,763 copying build/lib/MEDS_transforms/dataframe/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/dataframe 2026-04-28T02:18:25,765 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/compute_modes 2026-04-28T02:18:25,766 copying build/lib/MEDS_transforms/compute_modes/match_revise.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/compute_modes 2026-04-28T02:18:25,769 copying build/lib/MEDS_transforms/compute_modes/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/compute_modes 2026-04-28T02:18:25,771 copying build/lib/MEDS_transforms/compute_modes/compute_fn.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/compute_modes 2026-04-28T02:18:25,773 copying build/lib/MEDS_transforms/runner.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,776 copying build/lib/MEDS_transforms/utils.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms 2026-04-28T02:18:25,779 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages 2026-04-28T02:18:25,780 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,782 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,783 copying build/lib/MEDS_transforms/stages/filter_subjects/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,788 copying build/lib/MEDS_transforms/stages/filter_subjects/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,789 copying build/lib/MEDS_transforms/stages/filter_subjects/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects/examples 2026-04-28T02:18:25,791 copying build/lib/MEDS_transforms/stages/filter_subjects/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,793 copying build/lib/MEDS_transforms/stages/filter_subjects/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,794 copying build/lib/MEDS_transforms/stages/filter_subjects/filter_subjects.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_subjects 2026-04-28T02:18:25,797 copying build/lib/MEDS_transforms/stages/discovery.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages 2026-04-28T02:18:25,799 copying build/lib/MEDS_transforms/stages/examples.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages 2026-04-28T02:18:25,802 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,803 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/occlude_outliers/examples 2026-04-28T02:18:25,805 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,806 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,808 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,810 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,812 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline 2026-04-28T02:18:25,814 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples 2026-04-28T02:18:25,816 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,817 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,819 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,821 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,823 copying build/lib/MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data 2026-04-28T02:18:25,824 copying build/lib/MEDS_transforms/stages/occlude_outliers/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,826 copying build/lib/MEDS_transforms/stages/occlude_outliers/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,828 copying build/lib/MEDS_transforms/stages/occlude_outliers/README.md -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,830 copying build/lib/MEDS_transforms/stages/occlude_outliers/occlude_outliers.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/occlude_outliers 2026-04-28T02:18:25,833 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,834 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples 2026-04-28T02:18:25,836 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline 2026-04-28T02:18:25,838 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline 2026-04-28T02:18:25,840 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,841 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,843 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,845 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,847 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,848 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization 2026-04-28T02:18:25,851 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,852 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,854 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,856 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,858 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,859 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection 2026-04-28T02:18:25,861 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples 2026-04-28T02:18:25,863 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,864 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,867 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,868 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,870 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data 2026-04-28T02:18:25,872 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,873 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,876 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,878 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,879 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,881 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards 2026-04-28T02:18:25,883 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,885 copying build/lib/MEDS_transforms/stages/aggregate_code_metadata/aggregate_code_metadata.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/aggregate_code_metadata 2026-04-28T02:18:25,888 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,890 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,891 copying build/lib/MEDS_transforms/stages/reorder_measurements/examples/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,893 copying build/lib/MEDS_transforms/stages/reorder_measurements/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,895 copying build/lib/MEDS_transforms/stages/reorder_measurements/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,897 copying build/lib/MEDS_transforms/stages/reorder_measurements/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements/examples 2026-04-28T02:18:25,898 copying build/lib/MEDS_transforms/stages/reorder_measurements/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,900 copying build/lib/MEDS_transforms/stages/reorder_measurements/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,902 copying build/lib/MEDS_transforms/stages/reorder_measurements/reorder_measurements.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reorder_measurements 2026-04-28T02:18:25,904 copying build/lib/MEDS_transforms/stages/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages 2026-04-28T02:18:25,906 copying build/lib/MEDS_transforms/stages/base.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages 2026-04-28T02:18:25,910 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,911 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,913 copying build/lib/MEDS_transforms/stages/extract_values/examples/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,915 copying build/lib/MEDS_transforms/stages/extract_values/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,916 copying build/lib/MEDS_transforms/stages/extract_values/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,918 copying build/lib/MEDS_transforms/stages/extract_values/examples/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,920 copying build/lib/MEDS_transforms/stages/extract_values/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values/examples 2026-04-28T02:18:25,921 copying build/lib/MEDS_transforms/stages/extract_values/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,923 copying build/lib/MEDS_transforms/stages/extract_values/extract_values.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/extract_values 2026-04-28T02:18:25,926 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,927 copying build/lib/MEDS_transforms/stages/bin_numeric_values/bin_numeric_values.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,931 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,932 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,935 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,936 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,938 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,940 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,942 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,944 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/custom_bins.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp 2026-04-28T02:18:25,946 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,947 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,949 copying build/lib/MEDS_transforms/stages/bin_numeric_values/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values/examples 2026-04-28T02:18:25,950 copying build/lib/MEDS_transforms/stages/bin_numeric_values/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,952 copying build/lib/MEDS_transforms/stages/bin_numeric_values/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/bin_numeric_values 2026-04-28T02:18:25,954 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/normalization 2026-04-28T02:18:25,956 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/normalization/examples 2026-04-28T02:18:25,957 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,958 copying build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,961 copying build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,963 copying build/lib/MEDS_transforms/stages/normalization/examples/in_example_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/in_example_pipeline 2026-04-28T02:18:25,964 copying build/lib/MEDS_transforms/stages/normalization/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples 2026-04-28T02:18:25,966 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,967 copying build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,969 copying build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,971 copying build/lib/MEDS_transforms/stages/normalization/examples/on_raw_static_data/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization/examples/on_raw_static_data 2026-04-28T02:18:25,972 copying build/lib/MEDS_transforms/stages/normalization/normalization.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization 2026-04-28T02:18:25,975 copying build/lib/MEDS_transforms/stages/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization 2026-04-28T02:18:25,977 copying build/lib/MEDS_transforms/stages/normalization/README.md -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/normalization 2026-04-28T02:18:25,979 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,980 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,982 copying build/lib/MEDS_transforms/stages/reshard_to_split/examples/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,984 copying build/lib/MEDS_transforms/stages/reshard_to_split/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,986 copying build/lib/MEDS_transforms/stages/reshard_to_split/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,987 copying build/lib/MEDS_transforms/stages/reshard_to_split/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split/examples 2026-04-28T02:18:25,989 copying build/lib/MEDS_transforms/stages/reshard_to_split/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,991 copying build/lib/MEDS_transforms/stages/reshard_to_split/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,993 copying build/lib/MEDS_transforms/stages/reshard_to_split/reshard_to_split.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/reshard_to_split 2026-04-28T02:18:25,995 copying build/lib/MEDS_transforms/stages/README.md -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages 2026-04-28T02:18:25,998 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:25,999 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:26,001 copying build/lib/MEDS_transforms/stages/filter_measurements/examples/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:26,003 copying build/lib/MEDS_transforms/stages/filter_measurements/examples/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:26,004 copying build/lib/MEDS_transforms/stages/filter_measurements/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:26,006 copying build/lib/MEDS_transforms/stages/filter_measurements/examples/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements/examples 2026-04-28T02:18:26,008 copying build/lib/MEDS_transforms/stages/filter_measurements/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:26,010 copying build/lib/MEDS_transforms/stages/filter_measurements/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:26,011 copying build/lib/MEDS_transforms/stages/filter_measurements/filter_measurements.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/filter_measurements 2026-04-28T02:18:26,014 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:26,016 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/fit_vocabulary_indices/examples 2026-04-28T02:18:26,018 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:26,019 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:26,021 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:26,024 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline 2026-04-28T02:18:26,025 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples 2026-04-28T02:18:26,028 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:26,029 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/out_metadata.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:26,031 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data 2026-04-28T02:18:26,032 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:26,034 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:26,036 copying build/lib/MEDS_transforms/stages/fit_vocabulary_indices/fit_vocabulary_indices.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/fit_vocabulary_indices 2026-04-28T02:18:26,039 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,040 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/add_time_derived_measurements.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,043 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/add_time_derived_measurements/examples 2026-04-28T02:18:26,045 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:26,046 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/in.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:26,048 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:26,050 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:26,052 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline 2026-04-28T02:18:26,054 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples 2026-04-28T02:18:26,056 creating build/bdist.linux-armv7l/wheel/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:26,057 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/out_data.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:26,060 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:26,061 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/_test_cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:26,063 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/cfg.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data 2026-04-28T02:18:26,065 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/timeline_tokens.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,068 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/__init__.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,069 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/time_of_day.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,072 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/age.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,074 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/config.yaml -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,076 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/README.md -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,078 copying build/lib/MEDS_transforms/stages/add_time_derived_measurements/utils.py -> build/bdist.linux-armv7l/wheel/./MEDS_transforms/stages/add_time_derived_measurements 2026-04-28T02:18:26,080 running install_egg_info 2026-04-28T02:18:26,087 Copying src/MEDS_transforms.egg-info to build/bdist.linux-armv7l/wheel/./MEDS_transforms-0.5.4-py3.11.egg-info 2026-04-28T02:18:26,099 running install_scripts 2026-04-28T02:18:26,112 creating build/bdist.linux-armv7l/wheel/meds_transforms-0.5.4.dist-info/WHEEL 2026-04-28T02:18:26,115 creating '/tmp/pip-wheel-hfamjul5/.tmp-rzizn2bl/meds_transforms-0.5.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-28T02:18:26,117 adding 'MEDS_transforms/__init__.py' 2026-04-28T02:18:26,118 adding 'MEDS_transforms/__main__.py' 2026-04-28T02:18:26,122 adding 'MEDS_transforms/parser.py' 2026-04-28T02:18:26,125 adding 'MEDS_transforms/pytest_plugin.py' 2026-04-28T02:18:26,128 adding 'MEDS_transforms/runner.py' 2026-04-28T02:18:26,129 adding 'MEDS_transforms/utils.py' 2026-04-28T02:18:26,131 adding 'MEDS_transforms/compute_modes/__init__.py' 2026-04-28T02:18:26,133 adding 'MEDS_transforms/compute_modes/compute_fn.py' 2026-04-28T02:18:26,136 adding 'MEDS_transforms/compute_modes/match_revise.py' 2026-04-28T02:18:26,137 adding 'MEDS_transforms/configs/__init__.py' 2026-04-28T02:18:26,139 adding 'MEDS_transforms/configs/_main.yaml' 2026-04-28T02:18:26,140 adding 'MEDS_transforms/configs/_runner.yaml' 2026-04-28T02:18:26,142 adding 'MEDS_transforms/configs/dataset.py' 2026-04-28T02:18:26,144 adding 'MEDS_transforms/configs/pipeline.py' 2026-04-28T02:18:26,147 adding 'MEDS_transforms/configs/stage.py' 2026-04-28T02:18:26,148 adding 'MEDS_transforms/configs/utils.py' 2026-04-28T02:18:26,150 adding 'MEDS_transforms/dataframe/__init__.py' 2026-04-28T02:18:26,151 adding 'MEDS_transforms/dataframe/read_fn.py' 2026-04-28T02:18:26,152 adding 'MEDS_transforms/dataframe/types.py' 2026-04-28T02:18:26,154 adding 'MEDS_transforms/dataframe/write_fn.py' 2026-04-28T02:18:26,155 adding 'MEDS_transforms/mapreduce/__init__.py' 2026-04-28T02:18:26,157 adding 'MEDS_transforms/mapreduce/mapper.py' 2026-04-28T02:18:26,158 adding 'MEDS_transforms/mapreduce/reducer.py' 2026-04-28T02:18:26,160 adding 'MEDS_transforms/mapreduce/rwlock.py' 2026-04-28T02:18:26,162 adding 'MEDS_transforms/mapreduce/shard_iteration.py' 2026-04-28T02:18:26,166 adding 'MEDS_transforms/mapreduce/stage.py' 2026-04-28T02:18:26,168 adding 'MEDS_transforms/stages/README.md' 2026-04-28T02:18:26,169 adding 'MEDS_transforms/stages/__init__.py' 2026-04-28T02:18:26,177 adding 'MEDS_transforms/stages/base.py' 2026-04-28T02:18:26,179 adding 'MEDS_transforms/stages/discovery.py' 2026-04-28T02:18:26,183 adding 'MEDS_transforms/stages/examples.py' 2026-04-28T02:18:26,186 adding 'MEDS_transforms/stages/add_time_derived_measurements/README.md' 2026-04-28T02:18:26,187 adding 'MEDS_transforms/stages/add_time_derived_measurements/__init__.py' 2026-04-28T02:18:26,189 adding 'MEDS_transforms/stages/add_time_derived_measurements/add_time_derived_measurements.py' 2026-04-28T02:18:26,190 adding 'MEDS_transforms/stages/add_time_derived_measurements/age.py' 2026-04-28T02:18:26,192 adding 'MEDS_transforms/stages/add_time_derived_measurements/config.yaml' 2026-04-28T02:18:26,193 adding 'MEDS_transforms/stages/add_time_derived_measurements/time_of_day.py' 2026-04-28T02:18:26,195 adding 'MEDS_transforms/stages/add_time_derived_measurements/timeline_tokens.py' 2026-04-28T02:18:26,197 adding 'MEDS_transforms/stages/add_time_derived_measurements/utils.py' 2026-04-28T02:18:26,198 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/__init__.py' 2026-04-28T02:18:26,200 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/__init__.py' 2026-04-28T02:18:26,201 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/cfg.yaml' 2026-04-28T02:18:26,202 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/in.yaml' 2026-04-28T02:18:26,204 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/in_example_pipeline/out_data.yaml' 2026-04-28T02:18:26,205 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/__init__.py' 2026-04-28T02:18:26,207 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/_test_cfg.yaml' 2026-04-28T02:18:26,208 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/cfg.yaml' 2026-04-28T02:18:26,209 adding 'MEDS_transforms/stages/add_time_derived_measurements/examples/on_raw_static_data/out_data.yaml' 2026-04-28T02:18:26,211 adding 'MEDS_transforms/stages/aggregate_code_metadata/__init__.py' 2026-04-28T02:18:26,214 adding 'MEDS_transforms/stages/aggregate_code_metadata/aggregate_code_metadata.py' 2026-04-28T02:18:26,216 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/__init__.py' 2026-04-28T02:18:26,218 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/__init__.py' 2026-04-28T02:18:26,219 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/__init__.py' 2026-04-28T02:18:26,220 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/_test_cfg.yaml' 2026-04-28T02:18:26,221 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/cfg.yaml' 2026-04-28T02:18:26,223 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/in.yaml' 2026-04-28T02:18:26,224 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_normalization/out_metadata.yaml' 2026-04-28T02:18:26,226 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/__init__.py' 2026-04-28T02:18:26,227 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/_test_cfg.yaml' 2026-04-28T02:18:26,228 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/cfg.yaml' 2026-04-28T02:18:26,229 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/in.yaml' 2026-04-28T02:18:26,230 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/in_example_pipeline/fit_outlier_detection/out_metadata.yaml' 2026-04-28T02:18:26,232 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/__init__.py' 2026-04-28T02:18:26,234 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/_test_cfg.yaml' 2026-04-28T02:18:26,235 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/cfg.yaml' 2026-04-28T02:18:26,236 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/on_raw_static_data/out_metadata.yaml' 2026-04-28T02:18:26,238 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/__init__.py' 2026-04-28T02:18:26,239 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/_test_cfg.yaml' 2026-04-28T02:18:26,240 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/cfg.yaml' 2026-04-28T02:18:26,242 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/in.yaml' 2026-04-28T02:18:26,243 adding 'MEDS_transforms/stages/aggregate_code_metadata/examples/with_not_split_defined_shards/out_metadata.yaml' 2026-04-28T02:18:26,244 adding 'MEDS_transforms/stages/bin_numeric_values/__init__.py' 2026-04-28T02:18:26,248 adding 'MEDS_transforms/stages/bin_numeric_values/bin_numeric_values.py' 2026-04-28T02:18:26,249 adding 'MEDS_transforms/stages/bin_numeric_values/config.yaml' 2026-04-28T02:18:26,251 adding 'MEDS_transforms/stages/bin_numeric_values/examples/__init__.py' 2026-04-28T02:18:26,252 adding 'MEDS_transforms/stages/bin_numeric_values/examples/cfg.yaml' 2026-04-28T02:18:26,253 adding 'MEDS_transforms/stages/bin_numeric_values/examples/in.yaml' 2026-04-28T02:18:26,255 adding 'MEDS_transforms/stages/bin_numeric_values/examples/out_data.yaml' 2026-04-28T02:18:26,256 adding 'MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/__init__.py' 2026-04-28T02:18:26,257 adding 'MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/cfg.yaml' 2026-04-28T02:18:26,259 adding 'MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/custom_bins.yaml' 2026-04-28T02:18:26,260 adding 'MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/in.yaml' 2026-04-28T02:18:26,261 adding 'MEDS_transforms/stages/bin_numeric_values/examples/custom_bins_fp/out_data.yaml' 2026-04-28T02:18:26,263 adding 'MEDS_transforms/stages/extract_values/__init__.py' 2026-04-28T02:18:26,265 adding 'MEDS_transforms/stages/extract_values/extract_values.py' 2026-04-28T02:18:26,266 adding 'MEDS_transforms/stages/extract_values/examples/__init__.py' 2026-04-28T02:18:26,267 adding 'MEDS_transforms/stages/extract_values/examples/_test_cfg.yaml' 2026-04-28T02:18:26,269 adding 'MEDS_transforms/stages/extract_values/examples/cfg.yaml' 2026-04-28T02:18:26,270 adding 'MEDS_transforms/stages/extract_values/examples/in.yaml' 2026-04-28T02:18:26,271 adding 'MEDS_transforms/stages/extract_values/examples/out_data.yaml' 2026-04-28T02:18:26,273 adding 'MEDS_transforms/stages/filter_measurements/__init__.py' 2026-04-28T02:18:26,274 adding 'MEDS_transforms/stages/filter_measurements/config.yaml' 2026-04-28T02:18:26,275 adding 'MEDS_transforms/stages/filter_measurements/filter_measurements.py' 2026-04-28T02:18:26,277 adding 'MEDS_transforms/stages/filter_measurements/examples/__init__.py' 2026-04-28T02:18:26,278 adding 'MEDS_transforms/stages/filter_measurements/examples/cfg.yaml' 2026-04-28T02:18:26,279 adding 'MEDS_transforms/stages/filter_measurements/examples/in.yaml' 2026-04-28T02:18:26,281 adding 'MEDS_transforms/stages/filter_measurements/examples/out_data.yaml' 2026-04-28T02:18:26,282 adding 'MEDS_transforms/stages/filter_subjects/__init__.py' 2026-04-28T02:18:26,284 adding 'MEDS_transforms/stages/filter_subjects/config.yaml' 2026-04-28T02:18:26,285 adding 'MEDS_transforms/stages/filter_subjects/filter_subjects.py' 2026-04-28T02:18:26,287 adding 'MEDS_transforms/stages/filter_subjects/examples/__init__.py' 2026-04-28T02:18:26,288 adding 'MEDS_transforms/stages/filter_subjects/examples/cfg.yaml' 2026-04-28T02:18:26,289 adding 'MEDS_transforms/stages/filter_subjects/examples/out_data.yaml' 2026-04-28T02:18:26,291 adding 'MEDS_transforms/stages/fit_vocabulary_indices/__init__.py' 2026-04-28T02:18:26,292 adding 'MEDS_transforms/stages/fit_vocabulary_indices/config.yaml' 2026-04-28T02:18:26,294 adding 'MEDS_transforms/stages/fit_vocabulary_indices/fit_vocabulary_indices.py' 2026-04-28T02:18:26,296 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/__init__.py' 2026-04-28T02:18:26,298 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/__init__.py' 2026-04-28T02:18:26,299 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/in.yaml' 2026-04-28T02:18:26,300 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/in_example_pipeline/out_metadata.yaml' 2026-04-28T02:18:26,302 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/__init__.py' 2026-04-28T02:18:26,303 adding 'MEDS_transforms/stages/fit_vocabulary_indices/examples/on_raw_static_data/out_metadata.yaml' 2026-04-28T02:18:26,305 adding 'MEDS_transforms/stages/normalization/README.md' 2026-04-28T02:18:26,306 adding 'MEDS_transforms/stages/normalization/__init__.py' 2026-04-28T02:18:26,308 adding 'MEDS_transforms/stages/normalization/normalization.py' 2026-04-28T02:18:26,310 adding 'MEDS_transforms/stages/normalization/examples/__init__.py' 2026-04-28T02:18:26,311 adding 'MEDS_transforms/stages/normalization/examples/in_example_pipeline/__init__.py' 2026-04-28T02:18:26,313 adding 'MEDS_transforms/stages/normalization/examples/in_example_pipeline/in.yaml' 2026-04-28T02:18:26,314 adding 'MEDS_transforms/stages/normalization/examples/in_example_pipeline/out_data.yaml' 2026-04-28T02:18:26,316 adding 'MEDS_transforms/stages/normalization/examples/on_raw_static_data/__init__.py' 2026-04-28T02:18:26,317 adding 'MEDS_transforms/stages/normalization/examples/on_raw_static_data/in.yaml' 2026-04-28T02:18:26,319 adding 'MEDS_transforms/stages/normalization/examples/on_raw_static_data/out_data.yaml' 2026-04-28T02:18:26,320 adding 'MEDS_transforms/stages/occlude_outliers/README.md' 2026-04-28T02:18:26,321 adding 'MEDS_transforms/stages/occlude_outliers/__init__.py' 2026-04-28T02:18:26,322 adding 'MEDS_transforms/stages/occlude_outliers/config.yaml' 2026-04-28T02:18:26,324 adding 'MEDS_transforms/stages/occlude_outliers/occlude_outliers.py' 2026-04-28T02:18:26,326 adding 'MEDS_transforms/stages/occlude_outliers/examples/__init__.py' 2026-04-28T02:18:26,327 adding 'MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/__init__.py' 2026-04-28T02:18:26,328 adding 'MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/cfg.yaml' 2026-04-28T02:18:26,330 adding 'MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/in.yaml' 2026-04-28T02:18:26,331 adding 'MEDS_transforms/stages/occlude_outliers/examples/in_example_pipeline/out_data.yaml' 2026-04-28T02:18:26,333 adding 'MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/__init__.py' 2026-04-28T02:18:26,334 adding 'MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/cfg.yaml' 2026-04-28T02:18:26,335 adding 'MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/in.yaml' 2026-04-28T02:18:26,336 adding 'MEDS_transforms/stages/occlude_outliers/examples/on_raw_static_data/out_data.yaml' 2026-04-28T02:18:26,338 adding 'MEDS_transforms/stages/reorder_measurements/__init__.py' 2026-04-28T02:18:26,339 adding 'MEDS_transforms/stages/reorder_measurements/config.yaml' 2026-04-28T02:18:26,341 adding 'MEDS_transforms/stages/reorder_measurements/reorder_measurements.py' 2026-04-28T02:18:26,343 adding 'MEDS_transforms/stages/reorder_measurements/examples/__init__.py' 2026-04-28T02:18:26,344 adding 'MEDS_transforms/stages/reorder_measurements/examples/cfg.yaml' 2026-04-28T02:18:26,345 adding 'MEDS_transforms/stages/reorder_measurements/examples/in.yaml' 2026-04-28T02:18:26,347 adding 'MEDS_transforms/stages/reorder_measurements/examples/out_data.yaml' 2026-04-28T02:18:26,348 adding 'MEDS_transforms/stages/reshard_to_split/__init__.py' 2026-04-28T02:18:26,349 adding 'MEDS_transforms/stages/reshard_to_split/config.yaml' 2026-04-28T02:18:26,352 adding 'MEDS_transforms/stages/reshard_to_split/reshard_to_split.py' 2026-04-28T02:18:26,354 adding 'MEDS_transforms/stages/reshard_to_split/examples/__init__.py' 2026-04-28T02:18:26,355 adding 'MEDS_transforms/stages/reshard_to_split/examples/cfg.yaml' 2026-04-28T02:18:26,356 adding 'MEDS_transforms/stages/reshard_to_split/examples/in.yaml' 2026-04-28T02:18:26,358 adding 'MEDS_transforms/stages/reshard_to_split/examples/out_data.yaml' 2026-04-28T02:18:26,360 adding 'meds_transforms-0.5.4.dist-info/licenses/LICENSE' 2026-04-28T02:18:26,363 adding 'meds_transforms-0.5.4.dist-info/METADATA' 2026-04-28T02:18:26,364 adding 'meds_transforms-0.5.4.dist-info/WHEEL' 2026-04-28T02:18:26,365 adding 'meds_transforms-0.5.4.dist-info/entry_points.txt' 2026-04-28T02:18:26,366 adding 'meds_transforms-0.5.4.dist-info/top_level.txt' 2026-04-28T02:18:26,369 adding 'meds_transforms-0.5.4.dist-info/RECORD' 2026-04-28T02:18:26,373 removing build/bdist.linux-armv7l/wheel 2026-04-28T02:18:26,530 Building wheel for meds-transforms (pyproject.toml): finished with status 'done' 2026-04-28T02:18:26,539 Created wheel for meds-transforms: filename=meds_transforms-0.5.4-py3-none-any.whl size=200631 sha256=3f777760772b9c4eb088c561318a7f24ace4b4834a499585aefd68a5d8e8f531 2026-04-28T02:18:26,540 Stored in directory: /tmp/pip-ephem-wheel-cache-4rhhm_55/wheels/83/ca/ce/9df15e6e260954bdd0f67568107fcb71a8a2fb844d6e42d94c 2026-04-28T02:18:26,558 Successfully built meds-transforms 2026-04-28T02:18:26,566 Removed build tracker: '/tmp/pip-build-tracker-6bf0x9nz'