2026-04-28T12:56:00,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-42vf1c5z 2026-04-28T12:56:00,162 Created temporary directory: /tmp/pip-build-tracker-kklkbq65 2026-04-28T12:56:00,163 Initialized build tracking at /tmp/pip-build-tracker-kklkbq65 2026-04-28T12:56:00,163 Created build tracker: /tmp/pip-build-tracker-kklkbq65 2026-04-28T12:56:00,164 Entered build tracker: /tmp/pip-build-tracker-kklkbq65 2026-04-28T12:56:00,165 Created temporary directory: /tmp/pip-wheel-wgb3t0vn 2026-04-28T12:56:00,167 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-28T12:56:00,170 Created temporary directory: /tmp/pip-ephem-wheel-cache-40a5zav7 2026-04-28T12:56:00,194 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-28T12:56:00,197 2 location(s) to search for versions of voxcell: 2026-04-28T12:56:00,197 * https://pypi.org/simple/voxcell/ 2026-04-28T12:56:00,197 * https://www.piwheels.org/simple/voxcell/ 2026-04-28T12:56:00,198 Fetching project page and analyzing links: https://pypi.org/simple/voxcell/ 2026-04-28T12:56:00,199 Getting page https://pypi.org/simple/voxcell/ 2026-04-28T12:56:00,200 Found index url https://pypi.org/simple 2026-04-28T12:56:00,426 Fetched page https://pypi.org/simple/voxcell/ as application/vnd.pypi.simple.v1+json 2026-04-28T12:56:00,430 Found link https://files.pythonhosted.org/packages/9c/8b/ecbf1ac6838f443080213bf677d64d5f29f99e2a22c4578c413996f630c1/voxcell-3.1.1.dev1.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.1.dev1 2026-04-28T12:56:00,431 Found link https://files.pythonhosted.org/packages/28/ff/e9a3bf7a5819d36d8f9abe3a61d41b799f61eebcf8d1ee2f2ee6614b9636/voxcell-3.1.1.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.1 2026-04-28T12:56:00,432 Found link https://files.pythonhosted.org/packages/72/6e/55df188475bc8012dce7460b4fcb50752ffbc3e68cbc7fec0c7df1f5c5a4/voxcell-3.1.2.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.2 2026-04-28T12:56:00,433 Found link https://files.pythonhosted.org/packages/f8/cd/5cb52bf8e4860f9cd9f04637806fe9ab1f0e372aa23974fdee0a603a40e8/voxcell-3.1.3.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.3 2026-04-28T12:56:00,434 Found link https://files.pythonhosted.org/packages/ff/79/72eddca07f20dac8dbf648ff515a6c0d885f99997b402ef23801b8c9501c/voxcell-3.1.4.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.4 2026-04-28T12:56:00,435 Found link https://files.pythonhosted.org/packages/f6/f2/09659bb4041fe329f92d353978773827957f571b722e0551aced502462f6/voxcell-3.1.5.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.7), version: 3.1.5 2026-04-28T12:56:00,436 Found link https://files.pythonhosted.org/packages/8e/e4/2fa410101e85a2dc2d0b624b8956666bce6cb2b4a6c4516af5a4bf87b81b/voxcell-3.1.6.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8), version: 3.1.6 2026-04-28T12:56:00,437 Found link https://files.pythonhosted.org/packages/eb/21/632cafa10830b230e54b282e88ece912dbdb8a76746286091bd79ba87183/voxcell-3.1.7.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8), version: 3.1.7 2026-04-28T12:56:00,438 Found link https://files.pythonhosted.org/packages/1c/56/dd4c148a26f402d28f48ec53ab72a66eb1fc1f77b380c222b017332aaf67/voxcell-3.1.8.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8), version: 3.1.8 2026-04-28T12:56:00,439 Found link https://files.pythonhosted.org/packages/eb/2b/739e68ffccfa548121eb8b2578bee84276cf5bddbf4bf31c7baa34b3add3/voxcell-3.1.9.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8), version: 3.1.9 2026-04-28T12:56:00,440 Skipping link: No binaries permitted for voxcell: https://files.pythonhosted.org/packages/5c/4e/f0f4e3a9a0e48765a7e094f8857e5c32880e6a1b91bd6f857ed98d956363/voxcell-3.1.10-py3-none-any.whl (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,441 Found link https://files.pythonhosted.org/packages/a2/91/54531dcb07c6b2432f82828d09712260723871c073c09a86b2abf426aff0/voxcell-3.1.10.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.8), version: 3.1.10 2026-04-28T12:56:00,441 Skipping link: No binaries permitted for voxcell: https://files.pythonhosted.org/packages/20/56/868db919c3bb9676457f85e29bad05c73c3e1238db2c85c562ae2df331fe/voxcell-3.1.11-py3-none-any.whl (from https://pypi.org/simple/voxcell/) (requires-python:>=3.9) 2026-04-28T12:56:00,442 Found link https://files.pythonhosted.org/packages/89/b4/5bc3778c5967f9cf721e783225576f46b9db65dd64eddcc0aa34663aceb4/voxcell-3.1.11.tar.gz (from https://pypi.org/simple/voxcell/) (requires-python:>=3.9), version: 3.1.11 2026-04-28T12:56:00,443 Fetching project page and analyzing links: https://www.piwheels.org/simple/voxcell/ 2026-04-28T12:56:00,443 Getting page https://www.piwheels.org/simple/voxcell/ 2026-04-28T12:56:00,445 Found index url https://www.piwheels.org/simple 2026-04-28T12:56:00,611 Fetched page https://www.piwheels.org/simple/voxcell/ as text/html 2026-04-28T12:56:00,615 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.10-py3-none-any.whl#sha256=c0df27985f6717f8737c4c5f99efb210d3e1abc556dff05f1f5c733b4ce34415 (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,616 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.9-py3-none-any.whl#sha256=4b7fec030891bcfdab64091c12eb1a042be8dbd85b3dbc91cca8f6410d98dbbf (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,616 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.8-py3-none-any.whl#sha256=233e2a871c40e4b46199cf87bf4e96eec72af3e8992fed387012a21ac23ff616 (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,617 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.7-py3-none-any.whl#sha256=3b9eeee0078045816c31e39495e58d0b19a2908bcb79ce909cd79b368f00af8e (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,618 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.6-py3-none-any.whl#sha256=809a6766b1230f09f1cf575718dd4135f971f1e8fb69cadf32433a61c7ca042c (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.8) 2026-04-28T12:56:00,618 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.5-py3-none-any.whl#sha256=0f69947889464117b8d28e513dcb4009734d01b30e37b96a504c070e40115797 (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,619 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.4-py3-none-any.whl#sha256=b9e0e64415bb7b1b17174f8826aaed7ab45b67439d330818d42225a0f8c8dbcd (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,619 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.3-py3-none-any.whl#sha256=6f61288c05136c3d20faf3925048848f366c48616f94cd91ed15384ae8129a6a (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,620 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.2-py3-none-any.whl#sha256=87be3c57d52f4892eb50dc49c4d94ef2b71255e8b24988b369ab66176ff28227 (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,621 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.1-py3-none-any.whl#sha256=c67d9cac5f53ac0e8806913236dba1efc7958411fed189c0abe69a9f70c6ac5b (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,621 Skipping link: No binaries permitted for voxcell: https://archive1.piwheels.org/simple/voxcell/voxcell-3.1.1.dev1-py3-none-any.whl#sha256=bb0a40d10113070869f35367a3d6925867f393ebb50e9aaf75d6c30620ff85ba (from https://www.piwheels.org/simple/voxcell/) (requires-python:>=3.7) 2026-04-28T12:56:00,622 Skipping link: not a file: https://www.piwheels.org/simple/voxcell/ 2026-04-28T12:56:00,622 Skipping link: not a file: https://pypi.org/simple/voxcell/ 2026-04-28T12:56:00,644 Given no hashes to check 1 links for project 'voxcell': discarding no candidates 2026-04-28T12:56:00,664 Collecting voxcell==3.1.11 2026-04-28T12:56:00,666 Created temporary directory: /tmp/pip-unpack-wvsdhgk3 2026-04-28T12:56:00,814 Downloading voxcell-3.1.11.tar.gz (226 kB) 2026-04-28T12:56:01,076 Added voxcell==3.1.11 from https://files.pythonhosted.org/packages/89/b4/5bc3778c5967f9cf721e783225576f46b9db65dd64eddcc0aa34663aceb4/voxcell-3.1.11.tar.gz to build tracker '/tmp/pip-build-tracker-kklkbq65' 2026-04-28T12:56:01,081 Created temporary directory: /tmp/pip-build-env-gsjrs90d 2026-04-28T12:56:01,086 Installing build dependencies: started 2026-04-28T12:56:01,087 Running command pip subprocess to install build dependencies 2026-04-28T12:56:01,118 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/outofcuda_hook.pth: 2026-04-28T12:56:01,157 Traceback (most recent call last): 2026-04-28T12:56:01,158 File "", line 192, in addpackage 2026-04-28T12:56:01,158 File "", line 1, in 2026-04-28T12:56:01,159 ModuleNotFoundError: No module named 'outofcuda' 2026-04-28T12:56:01,160 Remainder of file ignored 2026-04-28T12:56:02,245 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-28T12:56:02,650 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-28T12:56:02,672 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-28T12:56:04,419 Collecting setuptools 2026-04-28T12:56:04,516 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-28T12:56:04,896 Collecting setuptools-scm 2026-04-28T12:56:04,913 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-28T12:56:05,217 Collecting vcs-versioning>=1.0.0.dev0 2026-04-28T12:56:05,235 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-28T12:56:05,422 Collecting packaging>=20 2026-04-28T12:56:05,442 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-04-28T12:56:08,422 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-28T12:56:11,999 Creating /tmp/pip-build-env-gsjrs90d/overlay/local/bin 2026-04-28T12:56:12,001 changing mode of /tmp/pip-build-env-gsjrs90d/overlay/local/bin/vcs-versioning to 755 2026-04-28T12:56:12,106 changing mode of /tmp/pip-build-env-gsjrs90d/overlay/local/bin/setuptools-scm to 755 2026-04-28T12:56:12,134 Successfully installed packaging-26.2 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-28T12:56:12,417 Installing build dependencies: finished with status 'done' 2026-04-28T12:56:12,424 Getting requirements to build wheel: started 2026-04-28T12:56:12,425 Running command Getting requirements to build wheel 2026-04-28T12:56:13,214 running egg_info 2026-04-28T12:56:13,222 writing voxcell.egg-info/PKG-INFO 2026-04-28T12:56:13,225 writing dependency_links to voxcell.egg-info/dependency_links.txt 2026-04-28T12:56:13,227 writing requirements to voxcell.egg-info/requires.txt 2026-04-28T12:56:13,228 writing top-level names to voxcell.egg-info/top_level.txt 2026-04-28T12:56:13,278 /tmp/pip-build-env-gsjrs90d/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T12:56:13,278 return get_active_overrides().subprocess_timeout 2026-04-28T12:56:13,285 listing git files failed - pretending there aren't any 2026-04-28T12:56:13,290 reading manifest file 'voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:13,296 reading manifest template 'MANIFEST.in' 2026-04-28T12:56:13,300 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-04-28T12:56:13,301 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-28T12:56:13,301 adding license file 'LICENSE.txt' 2026-04-28T12:56:13,302 adding license file 'AUTHORS.txt' 2026-04-28T12:56:13,306 writing manifest file 'voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:13,411 Getting requirements to build wheel: finished with status 'done' 2026-04-28T12:56:13,415 Created temporary directory: /tmp/pip-modern-metadata-xqr5v__c 2026-04-28T12:56:13,417 Preparing metadata (pyproject.toml): started 2026-04-28T12:56:13,419 Running command Preparing metadata (pyproject.toml) 2026-04-28T12:56:14,157 running dist_info 2026-04-28T12:56:14,171 creating /tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info 2026-04-28T12:56:14,172 writing /tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/PKG-INFO 2026-04-28T12:56:14,175 writing dependency_links to /tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/dependency_links.txt 2026-04-28T12:56:14,178 writing requirements to /tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/requires.txt 2026-04-28T12:56:14,179 writing top-level names to /tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/top_level.txt 2026-04-28T12:56:14,180 writing manifest file '/tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:14,223 /tmp/pip-build-env-gsjrs90d/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T12:56:14,223 return get_active_overrides().subprocess_timeout 2026-04-28T12:56:14,229 listing git files failed - pretending there aren't any 2026-04-28T12:56:14,234 reading manifest file '/tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:14,236 reading manifest template 'MANIFEST.in' 2026-04-28T12:56:14,240 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-04-28T12:56:14,240 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-28T12:56:14,241 adding license file 'LICENSE.txt' 2026-04-28T12:56:14,242 adding license file 'AUTHORS.txt' 2026-04-28T12:56:14,244 writing manifest file '/tmp/pip-modern-metadata-xqr5v__c/voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:14,246 creating '/tmp/pip-modern-metadata-xqr5v__c/voxcell-3.1.11.dist-info' 2026-04-28T12:56:14,378 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-28T12:56:14,383 Source in /tmp/pip-wheel-wgb3t0vn/voxcell_71d748c622aa4464a8d93688ab39ac95 has version 3.1.11, which satisfies requirement voxcell==3.1.11 from https://files.pythonhosted.org/packages/89/b4/5bc3778c5967f9cf721e783225576f46b9db65dd64eddcc0aa34663aceb4/voxcell-3.1.11.tar.gz 2026-04-28T12:56:14,384 Removed voxcell==3.1.11 from https://files.pythonhosted.org/packages/89/b4/5bc3778c5967f9cf721e783225576f46b9db65dd64eddcc0aa34663aceb4/voxcell-3.1.11.tar.gz from build tracker '/tmp/pip-build-tracker-kklkbq65' 2026-04-28T12:56:14,389 Created temporary directory: /tmp/pip-unpack-6ie4vgdu 2026-04-28T12:56:14,390 Building wheels for collected packages: voxcell 2026-04-28T12:56:14,394 Created temporary directory: /tmp/pip-wheel-re41gjef 2026-04-28T12:56:14,395 Destination directory: /tmp/pip-wheel-re41gjef 2026-04-28T12:56:14,397 Building wheel for voxcell (pyproject.toml): started 2026-04-28T12:56:14,398 Running command Building wheel for voxcell (pyproject.toml) 2026-04-28T12:56:15,112 running bdist_wheel 2026-04-28T12:56:15,137 running build 2026-04-28T12:56:15,138 running build_py 2026-04-28T12:56:15,139 creating build/lib/tests 2026-04-28T12:56:15,142 copying tests/test_region_map.py -> build/lib/tests 2026-04-28T12:56:15,144 copying tests/test_voxelbrain.py -> build/lib/tests 2026-04-28T12:56:15,147 copying tests/test_traits.py -> build/lib/tests 2026-04-28T12:56:15,149 copying tests/test_voxel_data.py -> build/lib/tests 2026-04-28T12:56:15,152 copying tests/test_quaternion.py -> build/lib/tests 2026-04-28T12:56:15,154 copying tests/test_cell_collection.py -> build/lib/tests 2026-04-28T12:56:15,157 copying tests/test_vector_fields.py -> build/lib/tests 2026-04-28T12:56:15,159 copying tests/test_math_utils.py -> build/lib/tests 2026-04-28T12:56:15,162 creating build/lib/voxcell 2026-04-28T12:56:15,163 copying voxcell/quaternion.py -> build/lib/voxcell 2026-04-28T12:56:15,166 copying voxcell/__init__.py -> build/lib/voxcell 2026-04-28T12:56:15,167 copying voxcell/exceptions.py -> build/lib/voxcell 2026-04-28T12:56:15,169 copying voxcell/math_utils.py -> build/lib/voxcell 2026-04-28T12:56:15,172 copying voxcell/voxel_data.py -> build/lib/voxcell 2026-04-28T12:56:15,174 copying voxcell/region_map.py -> build/lib/voxcell 2026-04-28T12:56:15,177 copying voxcell/traits.py -> build/lib/voxcell 2026-04-28T12:56:15,180 copying voxcell/cell_collection.py -> build/lib/voxcell 2026-04-28T12:56:15,183 copying voxcell/vector_fields.py -> build/lib/voxcell 2026-04-28T12:56:15,186 creating build/lib/tests/sonata 2026-04-28T12:56:15,187 copying tests/sonata/test_node_population.py -> build/lib/tests/sonata 2026-04-28T12:56:15,190 creating build/lib/voxcell/sonata 2026-04-28T12:56:15,191 copying voxcell/sonata/__init__.py -> build/lib/voxcell/sonata 2026-04-28T12:56:15,194 copying voxcell/sonata/node_population.py -> build/lib/voxcell/sonata 2026-04-28T12:56:15,196 creating build/lib/voxcell/nexus 2026-04-28T12:56:15,197 copying voxcell/nexus/__init__.py -> build/lib/voxcell/nexus 2026-04-28T12:56:15,199 copying voxcell/nexus/voxelbrain.py -> build/lib/voxcell/nexus 2026-04-28T12:56:15,202 creating build/lib/voxcell/utils 2026-04-28T12:56:15,203 copying voxcell/utils/__init__.py -> build/lib/voxcell/utils 2026-04-28T12:56:15,205 copying voxcell/utils/deprecate.py -> build/lib/voxcell/utils 2026-04-28T12:56:15,208 creating build/lib/doc/source 2026-04-28T12:56:15,209 copying doc/source/conf.py -> build/lib/doc/source 2026-04-28T12:56:15,213 creating build/lib/doc/source/extensions/bbp-table 2026-04-28T12:56:15,215 copying doc/source/extensions/bbp-table/__init__.py -> build/lib/doc/source/extensions/bbp-table 2026-04-28T12:56:15,217 running egg_info 2026-04-28T12:56:15,230 writing voxcell.egg-info/PKG-INFO 2026-04-28T12:56:15,233 writing dependency_links to voxcell.egg-info/dependency_links.txt 2026-04-28T12:56:15,235 writing requirements to voxcell.egg-info/requires.txt 2026-04-28T12:56:15,236 writing top-level names to voxcell.egg-info/top_level.txt 2026-04-28T12:56:15,273 /tmp/pip-build-env-gsjrs90d/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-28T12:56:15,273 return get_active_overrides().subprocess_timeout 2026-04-28T12:56:15,280 listing git files failed - pretending there aren't any 2026-04-28T12:56:15,284 reading manifest file 'voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:15,290 reading manifest template 'MANIFEST.in' 2026-04-28T12:56:15,294 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-04-28T12:56:15,294 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-28T12:56:15,295 adding license file 'LICENSE.txt' 2026-04-28T12:56:15,296 adding license file 'AUTHORS.txt' 2026-04-28T12:56:15,300 writing manifest file 'voxcell.egg-info/SOURCES.txt' 2026-04-28T12:56:15,311 copying doc/Makefile -> build/lib/doc 2026-04-28T12:56:15,313 creating build/lib/tests/data 2026-04-28T12:56:15,314 copying tests/data/hierarchy.json -> build/lib/tests/data 2026-04-28T12:56:15,317 copying tests/data/metadata.json -> build/lib/tests/data 2026-04-28T12:56:15,319 copying tests/data/no_spacings_fail.nrrd -> build/lib/tests/data 2026-04-28T12:56:15,321 copying tests/data/region_map.json -> build/lib/tests/data 2026-04-28T12:56:15,324 copying tests/data/scalar.nrrd -> build/lib/tests/data 2026-04-28T12:56:15,326 copying tests/data/space_directions.nrrd -> build/lib/tests/data 2026-04-28T12:56:15,328 copying tests/data/space_directions_fail.nrrd -> build/lib/tests/data 2026-04-28T12:56:15,330 copying tests/data/vector.nrrd -> build/lib/tests/data 2026-04-28T12:56:15,333 creating build/lib/tests/data/mvd2_mvd3 2026-04-28T12:56:15,334 copying tests/data/mvd2_mvd3/README.txt -> build/lib/tests/data/mvd2_mvd3 2026-04-28T12:56:15,336 copying tests/data/mvd2_mvd3/circuit.mvd2 -> build/lib/tests/data/mvd2_mvd3 2026-04-28T12:56:15,341 copying tests/data/mvd2_mvd3/circuit.mvd3 -> build/lib/tests/data/mvd2_mvd3 2026-04-28T12:56:15,346 creating build/lib/tests/data/sonata 2026-04-28T12:56:15,347 copying tests/data/sonata/nodes_eulers.h5 -> build/lib/tests/data/sonata 2026-04-28T12:56:15,351 copying tests/data/sonata/nodes_multi_types.h5 -> build/lib/tests/data/sonata 2026-04-28T12:56:15,354 copying tests/data/sonata/nodes_no_rotation.h5 -> build/lib/tests/data/sonata 2026-04-28T12:56:15,356 copying tests/data/sonata/nodes_quaternions.h5 -> build/lib/tests/data/sonata 2026-04-28T12:56:15,360 copying tests/data/sonata/nodes_quaternions_w_missing.h5 -> build/lib/tests/data/sonata 2026-04-28T12:56:15,363 copying doc/source/aibs.rst -> build/lib/doc/source 2026-04-28T12:56:15,365 copying doc/source/api.rst -> build/lib/doc/source 2026-04-28T12:56:15,367 copying doc/source/atlas.rst -> build/lib/doc/source 2026-04-28T12:56:15,370 copying doc/source/changelog.rst -> build/lib/doc/source 2026-04-28T12:56:15,372 copying doc/source/extras.rst -> build/lib/doc/source 2026-04-28T12:56:15,375 copying doc/source/formats.rst -> build/lib/doc/source 2026-04-28T12:56:15,377 copying doc/source/index.rst -> build/lib/doc/source 2026-04-28T12:56:15,379 copying doc/source/install.rst -> build/lib/doc/source 2026-04-28T12:56:15,381 copying doc/source/mask.rst -> build/lib/doc/source 2026-04-28T12:56:15,384 copying doc/source/orientation.rst -> build/lib/doc/source 2026-04-28T12:56:15,386 copying doc/source/scalar.rst -> build/lib/doc/source 2026-04-28T12:56:15,389 creating build/lib/doc/source/assets 2026-04-28T12:56:15,390 copying doc/source/assets/combined_dist.png -> build/lib/doc/source/assets 2026-04-28T12:56:15,393 copying doc/source/assets/size_dist.png -> build/lib/doc/source/assets 2026-04-28T12:56:15,397 creating build/lib/doc/source/_static 2026-04-28T12:56:15,398 copying doc/source/_static/.gitignore -> build/lib/doc/source/_static 2026-04-28T12:56:15,419 installing to build/bdist.linux-armv7l/wheel 2026-04-28T12:56:15,419 running install 2026-04-28T12:56:15,442 running install_lib 2026-04-28T12:56:15,449 creating build/bdist.linux-armv7l/wheel 2026-04-28T12:56:15,451 creating build/bdist.linux-armv7l/wheel/tests 2026-04-28T12:56:15,452 copying build/lib/tests/test_region_map.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,455 creating build/bdist.linux-armv7l/wheel/tests/sonata 2026-04-28T12:56:15,456 copying build/lib/tests/sonata/test_node_population.py -> build/bdist.linux-armv7l/wheel/./tests/sonata 2026-04-28T12:56:15,459 creating build/bdist.linux-armv7l/wheel/tests/data 2026-04-28T12:56:15,460 creating build/bdist.linux-armv7l/wheel/tests/data/mvd2_mvd3 2026-04-28T12:56:15,462 copying build/lib/tests/data/mvd2_mvd3/README.txt -> build/bdist.linux-armv7l/wheel/./tests/data/mvd2_mvd3 2026-04-28T12:56:15,464 copying build/lib/tests/data/mvd2_mvd3/circuit.mvd2 -> build/bdist.linux-armv7l/wheel/./tests/data/mvd2_mvd3 2026-04-28T12:56:15,468 copying build/lib/tests/data/mvd2_mvd3/circuit.mvd3 -> build/bdist.linux-armv7l/wheel/./tests/data/mvd2_mvd3 2026-04-28T12:56:15,473 copying build/lib/tests/data/scalar.nrrd -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,475 copying build/lib/tests/data/hierarchy.json -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,477 copying build/lib/tests/data/region_map.json -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,479 creating build/bdist.linux-armv7l/wheel/tests/data/sonata 2026-04-28T12:56:15,480 copying build/lib/tests/data/sonata/nodes_no_rotation.h5 -> build/bdist.linux-armv7l/wheel/./tests/data/sonata 2026-04-28T12:56:15,483 copying build/lib/tests/data/sonata/nodes_multi_types.h5 -> build/bdist.linux-armv7l/wheel/./tests/data/sonata 2026-04-28T12:56:15,485 copying build/lib/tests/data/sonata/nodes_quaternions_w_missing.h5 -> build/bdist.linux-armv7l/wheel/./tests/data/sonata 2026-04-28T12:56:15,488 copying build/lib/tests/data/sonata/nodes_quaternions.h5 -> build/bdist.linux-armv7l/wheel/./tests/data/sonata 2026-04-28T12:56:15,491 copying build/lib/tests/data/sonata/nodes_eulers.h5 -> build/bdist.linux-armv7l/wheel/./tests/data/sonata 2026-04-28T12:56:15,494 copying build/lib/tests/data/metadata.json -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,495 copying build/lib/tests/data/space_directions_fail.nrrd -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,497 copying build/lib/tests/data/vector.nrrd -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,499 copying build/lib/tests/data/space_directions.nrrd -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,501 copying build/lib/tests/data/no_spacings_fail.nrrd -> build/bdist.linux-armv7l/wheel/./tests/data 2026-04-28T12:56:15,503 copying build/lib/tests/test_voxelbrain.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,505 copying build/lib/tests/test_traits.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,508 copying build/lib/tests/test_voxel_data.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,511 copying build/lib/tests/test_quaternion.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,513 copying build/lib/tests/test_cell_collection.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,516 copying build/lib/tests/test_vector_fields.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,518 copying build/lib/tests/test_math_utils.py -> build/bdist.linux-armv7l/wheel/./tests 2026-04-28T12:56:15,521 creating build/bdist.linux-armv7l/wheel/voxcell 2026-04-28T12:56:15,522 copying build/lib/voxcell/quaternion.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,524 copying build/lib/voxcell/__init__.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,526 copying build/lib/voxcell/exceptions.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,528 copying build/lib/voxcell/math_utils.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,530 copying build/lib/voxcell/voxel_data.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,534 creating build/bdist.linux-armv7l/wheel/voxcell/sonata 2026-04-28T12:56:15,535 copying build/lib/voxcell/sonata/__init__.py -> build/bdist.linux-armv7l/wheel/./voxcell/sonata 2026-04-28T12:56:15,537 copying build/lib/voxcell/sonata/node_population.py -> build/bdist.linux-armv7l/wheel/./voxcell/sonata 2026-04-28T12:56:15,539 creating build/bdist.linux-armv7l/wheel/voxcell/nexus 2026-04-28T12:56:15,540 copying build/lib/voxcell/nexus/__init__.py -> build/bdist.linux-armv7l/wheel/./voxcell/nexus 2026-04-28T12:56:15,542 copying build/lib/voxcell/nexus/voxelbrain.py -> build/bdist.linux-armv7l/wheel/./voxcell/nexus 2026-04-28T12:56:15,545 copying build/lib/voxcell/region_map.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,547 copying build/lib/voxcell/traits.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,550 copying build/lib/voxcell/cell_collection.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,553 creating build/bdist.linux-armv7l/wheel/voxcell/utils 2026-04-28T12:56:15,554 copying build/lib/voxcell/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./voxcell/utils 2026-04-28T12:56:15,556 copying build/lib/voxcell/utils/deprecate.py -> build/bdist.linux-armv7l/wheel/./voxcell/utils 2026-04-28T12:56:15,558 copying build/lib/voxcell/vector_fields.py -> build/bdist.linux-armv7l/wheel/./voxcell 2026-04-28T12:56:15,560 creating build/bdist.linux-armv7l/wheel/doc 2026-04-28T12:56:15,561 copying build/lib/doc/Makefile -> build/bdist.linux-armv7l/wheel/./doc 2026-04-28T12:56:15,564 creating build/bdist.linux-armv7l/wheel/doc/source 2026-04-28T12:56:15,565 copying build/lib/doc/source/aibs.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,567 copying build/lib/doc/source/extras.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,570 creating build/bdist.linux-armv7l/wheel/doc/source/assets 2026-04-28T12:56:15,571 copying build/lib/doc/source/assets/combined_dist.png -> build/bdist.linux-armv7l/wheel/./doc/source/assets 2026-04-28T12:56:15,574 copying build/lib/doc/source/assets/size_dist.png -> build/bdist.linux-armv7l/wheel/./doc/source/assets 2026-04-28T12:56:15,577 copying build/lib/doc/source/conf.py -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,580 creating build/bdist.linux-armv7l/wheel/doc/source/_static 2026-04-28T12:56:15,581 copying build/lib/doc/source/_static/.gitignore -> build/bdist.linux-armv7l/wheel/./doc/source/_static 2026-04-28T12:56:15,583 copying build/lib/doc/source/formats.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,585 copying build/lib/doc/source/atlas.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,587 copying build/lib/doc/source/orientation.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,590 copying build/lib/doc/source/mask.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,592 copying build/lib/doc/source/scalar.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,594 copying build/lib/doc/source/index.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,595 copying build/lib/doc/source/api.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,598 creating build/bdist.linux-armv7l/wheel/doc/source/extensions 2026-04-28T12:56:15,599 creating build/bdist.linux-armv7l/wheel/doc/source/extensions/bbp-table 2026-04-28T12:56:15,601 copying build/lib/doc/source/extensions/bbp-table/__init__.py -> build/bdist.linux-armv7l/wheel/./doc/source/extensions/bbp-table 2026-04-28T12:56:15,603 copying build/lib/doc/source/install.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,605 copying build/lib/doc/source/changelog.rst -> build/bdist.linux-armv7l/wheel/./doc/source 2026-04-28T12:56:15,607 running install_egg_info 2026-04-28T12:56:15,614 Copying voxcell.egg-info to build/bdist.linux-armv7l/wheel/./voxcell-3.1.11-py3.11.egg-info 2026-04-28T12:56:15,624 running install_scripts 2026-04-28T12:56:15,636 creating build/bdist.linux-armv7l/wheel/voxcell-3.1.11.dist-info/WHEEL 2026-04-28T12:56:15,639 creating '/tmp/pip-wheel-re41gjef/.tmp-xwucxb2l/voxcell-3.1.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-28T12:56:15,641 adding 'doc/Makefile' 2026-04-28T12:56:15,643 adding 'doc/source/aibs.rst' 2026-04-28T12:56:15,644 adding 'doc/source/api.rst' 2026-04-28T12:56:15,646 adding 'doc/source/atlas.rst' 2026-04-28T12:56:15,647 adding 'doc/source/changelog.rst' 2026-04-28T12:56:15,649 adding 'doc/source/conf.py' 2026-04-28T12:56:15,650 adding 'doc/source/extras.rst' 2026-04-28T12:56:15,652 adding 'doc/source/formats.rst' 2026-04-28T12:56:15,653 adding 'doc/source/index.rst' 2026-04-28T12:56:15,654 adding 'doc/source/install.rst' 2026-04-28T12:56:15,655 adding 'doc/source/mask.rst' 2026-04-28T12:56:15,657 adding 'doc/source/orientation.rst' 2026-04-28T12:56:15,658 adding 'doc/source/scalar.rst' 2026-04-28T12:56:15,660 adding 'doc/source/_static/.gitignore' 2026-04-28T12:56:15,666 adding 'doc/source/assets/combined_dist.png' 2026-04-28T12:56:15,670 adding 'doc/source/assets/size_dist.png' 2026-04-28T12:56:15,673 adding 'doc/source/extensions/bbp-table/__init__.py' 2026-04-28T12:56:15,676 adding 'tests/test_cell_collection.py' 2026-04-28T12:56:15,678 adding 'tests/test_math_utils.py' 2026-04-28T12:56:15,679 adding 'tests/test_quaternion.py' 2026-04-28T12:56:15,681 adding 'tests/test_region_map.py' 2026-04-28T12:56:15,682 adding 'tests/test_traits.py' 2026-04-28T12:56:15,684 adding 'tests/test_vector_fields.py' 2026-04-28T12:56:15,686 adding 'tests/test_voxel_data.py' 2026-04-28T12:56:15,688 adding 'tests/test_voxelbrain.py' 2026-04-28T12:56:15,690 adding 'tests/data/hierarchy.json' 2026-04-28T12:56:15,691 adding 'tests/data/metadata.json' 2026-04-28T12:56:15,692 adding 'tests/data/no_spacings_fail.nrrd' 2026-04-28T12:56:15,694 adding 'tests/data/region_map.json' 2026-04-28T12:56:15,695 adding 'tests/data/scalar.nrrd' 2026-04-28T12:56:15,696 adding 'tests/data/space_directions.nrrd' 2026-04-28T12:56:15,697 adding 'tests/data/space_directions_fail.nrrd' 2026-04-28T12:56:15,699 adding 'tests/data/vector.nrrd' 2026-04-28T12:56:15,700 adding 'tests/data/mvd2_mvd3/README.txt' 2026-04-28T12:56:15,713 adding 'tests/data/mvd2_mvd3/circuit.mvd2' 2026-04-28T12:56:15,726 adding 'tests/data/mvd2_mvd3/circuit.mvd3' 2026-04-28T12:56:15,730 adding 'tests/data/sonata/nodes_eulers.h5' 2026-04-28T12:56:15,732 adding 'tests/data/sonata/nodes_multi_types.h5' 2026-04-28T12:56:15,734 adding 'tests/data/sonata/nodes_no_rotation.h5' 2026-04-28T12:56:15,736 adding 'tests/data/sonata/nodes_quaternions.h5' 2026-04-28T12:56:15,737 adding 'tests/data/sonata/nodes_quaternions_w_missing.h5' 2026-04-28T12:56:15,739 adding 'tests/sonata/test_node_population.py' 2026-04-28T12:56:15,741 adding 'voxcell/__init__.py' 2026-04-28T12:56:15,744 adding 'voxcell/cell_collection.py' 2026-04-28T12:56:15,745 adding 'voxcell/exceptions.py' 2026-04-28T12:56:15,747 adding 'voxcell/math_utils.py' 2026-04-28T12:56:15,748 adding 'voxcell/quaternion.py' 2026-04-28T12:56:15,750 adding 'voxcell/region_map.py' 2026-04-28T12:56:15,752 adding 'voxcell/traits.py' 2026-04-28T12:56:15,754 adding 'voxcell/vector_fields.py' 2026-04-28T12:56:15,757 adding 'voxcell/voxel_data.py' 2026-04-28T12:56:15,758 adding 'voxcell/nexus/__init__.py' 2026-04-28T12:56:15,760 adding 'voxcell/nexus/voxelbrain.py' 2026-04-28T12:56:15,762 adding 'voxcell/sonata/__init__.py' 2026-04-28T12:56:15,764 adding 'voxcell/sonata/node_population.py' 2026-04-28T12:56:15,765 adding 'voxcell/utils/__init__.py' 2026-04-28T12:56:15,766 adding 'voxcell/utils/deprecate.py' 2026-04-28T12:56:15,769 adding 'voxcell-3.1.11.dist-info/licenses/AUTHORS.txt' 2026-04-28T12:56:15,771 adding 'voxcell-3.1.11.dist-info/licenses/LICENSE.txt' 2026-04-28T12:56:15,773 adding 'voxcell-3.1.11.dist-info/METADATA' 2026-04-28T12:56:15,774 adding 'voxcell-3.1.11.dist-info/WHEEL' 2026-04-28T12:56:15,775 adding 'voxcell-3.1.11.dist-info/top_level.txt' 2026-04-28T12:56:15,776 adding 'voxcell-3.1.11.dist-info/RECORD' 2026-04-28T12:56:15,780 removing build/bdist.linux-armv7l/wheel 2026-04-28T12:56:15,906 Building wheel for voxcell (pyproject.toml): finished with status 'done' 2026-04-28T12:56:15,917 Created wheel for voxcell: filename=voxcell-3.1.11-py3-none-any.whl size=231544 sha256=4b1e8258c475ba3d8bcc6a90b517b8c7aafe66b12d6eb1727dd639be2bde14b4 2026-04-28T12:56:15,918 Stored in directory: /tmp/pip-ephem-wheel-cache-40a5zav7/wheels/ad/f8/56/7ee8eea8e4334fc7b6d49264bfa694c36733340ff1f9362aea 2026-04-28T12:56:15,931 Successfully built voxcell 2026-04-28T12:56:15,940 Removed build tracker: '/tmp/pip-build-tracker-kklkbq65'