2026-04-29T23:50:21,098 Created temporary directory: /tmp/pip-ephem-wheel-cache-rxvphxky 2026-04-29T23:50:21,100 Created temporary directory: /tmp/pip-build-tracker-6ts4g_qj 2026-04-29T23:50:21,101 Initialized build tracking at /tmp/pip-build-tracker-6ts4g_qj 2026-04-29T23:50:21,101 Created build tracker: /tmp/pip-build-tracker-6ts4g_qj 2026-04-29T23:50:21,102 Entered build tracker: /tmp/pip-build-tracker-6ts4g_qj 2026-04-29T23:50:21,102 Created temporary directory: /tmp/pip-wheel-1qijs99w 2026-04-29T23:50:21,106 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.11-py3-none-any.whl#sha256=0f9c9411cc9276d0c5c2cff1c759e8946517447a9d795d9ba64c7e7c88efef12 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,028 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.10-py3-none-any.whl#sha256=4081f4c81a78f44025502d0189c1662e07fc509907cbfa01c63668bfc92e0033 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,029 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.9-py3-none-any.whl#sha256=6af0125d06ea450cea48dcdef49d1e94f9380a93b51b3297187a49069b3f426c (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,030 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.8-py3-none-any.whl#sha256=8b395ff813f25a524475156501087c63a413c03b7293d4c693361233d073dafe (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,030 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.7-py3-none-any.whl#sha256=6d5b613ef79397dbbdcc16988a81a734df434a37cf4143ca1a5a47a9abe1442b (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,031 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.6-py3-none-any.whl#sha256=66b27146c2cc1acd303771bcb14e2dc8b3677ab53054e89cf5630350e47ea4dc (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,031 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.5-py3-none-any.whl#sha256=26662c2b3b963fde722720339b0b4c1a300858cc5725a73b0f2c80073520d22f (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,032 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.4-py3-none-any.whl#sha256=4ca5698bd5dabb85be486390ace77a2511f71de14e76f65cf765897fb75e2306 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,032 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.3-py3-none-any.whl#sha256=b614a4f5bd187a974f254667689d386a97ded357fd83f2c938483685e2c7e4d2 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,033 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.2-py3-none-any.whl#sha256=e68aad357bba198d1e3ec3850a822dc0ac6fae807b3e4817f2fa82df8d046f76 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,033 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.1-py3-none-any.whl#sha256=1f71b15ce09566ff0d941989612a0904574e81276add8d1cbad8e371b9dfe00d (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,034 Skipping link: No binaries permitted for pyiron-atomistics: https://archive1.piwheels.org/simple/pyiron-atomistics/pyiron_atomistics-0.2.0-py3-none-any.whl#sha256=a222f087ed8169f8c63b04d4ccbcf678779a69e8ccedb4e7c192b0f9873c5ed7 (from https://www.piwheels.org/simple/pyiron-atomistics/) 2026-04-29T23:50:22,034 Skipping link: not a file: https://www.piwheels.org/simple/pyiron-atomistics/ 2026-04-29T23:50:22,035 Skipping link: not a file: https://pypi.org/simple/pyiron-atomistics/ 2026-04-29T23:50:22,074 Given no hashes to check 1 links for project 'pyiron-atomistics': discarding no candidates 2026-04-29T23:50:22,094 Collecting pyiron-atomistics==0.8.8 2026-04-29T23:50:22,096 Created temporary directory: /tmp/pip-unpack-4ck156_6 2026-04-29T23:50:22,246 Downloading pyiron_atomistics-0.8.8.tar.gz (259 kB) 2026-04-29T23:50:22,559 Added pyiron-atomistics==0.8.8 from https://files.pythonhosted.org/packages/44/71/7df3903476aabc04d02109d83a2d903d28cee02166a1dad2dae930d3fee9/pyiron_atomistics-0.8.8.tar.gz to build tracker '/tmp/pip-build-tracker-6ts4g_qj' 2026-04-29T23:50:22,581 Created temporary directory: /tmp/pip-build-env-mcjk06pq 2026-04-29T23:50:22,585 Installing build dependencies: started 2026-04-29T23:50:22,587 Running command pip subprocess to install build dependencies 2026-04-29T23:50:23,713 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-29T23:50:24,177 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-29T23:50:24,200 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-29T23:50:24,747 Collecting ase 2026-04-29T23:50:24,984 Using cached https://www.piwheels.org/simple/ase/ase-3.28.0-py3-none-any.whl (2.9 MB) 2026-04-29T23:50:25,313 Collecting assyst 2026-04-29T23:50:25,519 Downloading https://archive1.piwheels.org/simple/assyst/assyst-0.13.0-py3-none-any.whl (19 kB) 2026-04-29T23:50:25,826 Collecting atomistics 2026-04-29T23:50:25,843 Downloading https://www.piwheels.org/simple/atomistics/atomistics-0.3.6-py3-none-any.whl (80 kB) 2026-04-29T23:50:25,863 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 80.3/80.3 kB 6.2 MB/s eta 0:00:00 2026-04-29T23:50:25,958 Collecting defusedxml 2026-04-29T23:50:25,976 Using cached https://www.piwheels.org/simple/defusedxml/defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) 2026-04-29T23:50:26,541 Collecting h5py 2026-04-29T23:50:26,565 Downloading https://www.piwheels.org/simple/h5py/h5py-3.16.0-cp311-cp311-linux_armv7l.whl (7.4 MB) 2026-04-29T23:50:27,827 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.4/7.4 MB 5.9 MB/s eta 0:00:00 2026-04-29T23:50:29,292 Collecting matplotlib 2026-04-29T23:50:29,900 Using cached https://www.piwheels.org/simple/matplotlib/matplotlib-3.10.9-cp311-cp311-linux_armv7l.whl (8.3 MB) 2026-04-29T23:50:30,257 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://files.pythonhosted.org/packages/be/8b/bc3f2b5c47040fa8df52d8dc0e4d3ba4432c78f71860a7b77e9f2b9a284f/mendeleev-0.10.0-py3-none-any.whl (from https://pypi.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,259 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://files.pythonhosted.org/packages/bc/b1/c5be69c10ba7cec635915f3598d2378b57026c7b579d2ac821fc97203d3b/mendeleev-0.10.0.tar.gz (from https://pypi.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,261 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://files.pythonhosted.org/packages/38/9c/d173a765b178b5b20790558349c703782d2afa7d4b10046e9216cead80e0/mendeleev-0.11.0-py3-none-any.whl (from https://pypi.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,263 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://files.pythonhosted.org/packages/7f/6e/a9a3b581d51b185a52dbf6dd134240859dff03905df408c5b2f1bc35c3d8/mendeleev-0.11.0.tar.gz (from https://pypi.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,329 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://archive1.piwheels.org/simple/mendeleev/mendeleev-0.11.0-py3-none-any.whl#sha256=c92b1f69eeec1ef0393a00aee39e401a44bf5ba14af6d34436fb3af0831f0d02 (from https://www.piwheels.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,331 Link requires a different Python (3.11.2 not in: '>=3.7.1,<3.11'): https://archive1.piwheels.org/simple/mendeleev/mendeleev-0.10.0-py3-none-any.whl#sha256=ded1f0d0fed2840c8c5a5aafe94df2d3d2f77036eea733b1130ee28f3c8df1f5 (from https://www.piwheels.org/simple/mendeleev/) (requires-python:>=3.7.1,<3.11) 2026-04-29T23:50:30,381 Collecting mendeleev 2026-04-29T23:50:30,577 Downloading https://archive1.piwheels.org/simple/mendeleev/mendeleev-1.1.0-py3-none-any.whl (1.4 MB) 2026-04-29T23:50:30,725 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 9.7 MB/s eta 0:00:00 2026-04-29T23:50:31,445 Collecting mp-api 2026-04-29T23:50:31,570 Downloading https://archive1.piwheels.org/simple/mp-api/mp_api-0.46.0-py3-none-any.whl (119 kB) 2026-04-29T23:50:31,593 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 119.4/119.4 kB 7.4 MB/s eta 0:00:00 2026-04-29T23:50:32,676 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-04-29T23:50:32,683 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-04-29T23:50:32,690 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-04-29T23:50:32,697 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-04-29T23:50:32,705 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-04-29T23:50:33,421 Collecting numpy 2026-04-29T23:50:33,889 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.4-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-04-29T23:50:35,153 Collecting pandas 2026-04-29T23:50:35,949 Using cached https://www.piwheels.org/simple/pandas/pandas-3.0.2-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-04-29T23:50:37,698 Collecting phonopy 2026-04-29T23:50:37,713 Downloading https://www.piwheels.org/simple/phonopy/phonopy-3.5.1-cp311-cp311-linux_armv7l.whl (536 kB) 2026-04-29T23:50:37,804 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 536.9/536.9 kB 6.4 MB/s eta 0:00:00 2026-04-29T23:50:38,061 Collecting pint 2026-04-29T23:50:38,080 Downloading https://www.piwheels.org/simple/pint/pint-0.25.3-py3-none-any.whl (307 kB) 2026-04-29T23:50:38,164 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 307.5/307.5 kB 3.9 MB/s eta 0:00:00 2026-04-29T23:50:38,683 Collecting pyiron_base 2026-04-29T23:50:38,698 Downloading https://www.piwheels.org/simple/pyiron-base/pyiron_base-0.15.14-py3-none-any.whl (305 kB) 2026-04-29T23:50:38,737 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 305.2/305.2 kB 9.8 MB/s eta 0:00:00 2026-04-29T23:50:39,026 Collecting pylammpsmpi 2026-04-29T23:50:39,040 Downloading https://www.piwheels.org/simple/pylammpsmpi/pylammpsmpi-0.3.12-py3-none-any.whl (24 kB) 2026-04-29T23:50:39,767 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/99/f1/c00d6be56e1a718a3068079e3ec8ce044d7179345280f6a3f5066068af0d/scipy-1.6.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2026-04-29T23:50:39,772 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/fe/fd/8704c7b7b34cdac850485e638346025ca57c5a859934b9aa1be5399b33b7/scipy-1.6.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2026-04-29T23:50:39,777 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/bb/bb/944f559d554df6c9adf037aa9fc982a9706ee0e96c0d5beac701cb158900/scipy-1.7.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2026-04-29T23:50:39,782 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/47/33/a24aec22b7be7fdb10ec117a95e1e4099890d8bbc6646902f443fc7719d1/scipy-1.7.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2026-04-29T23:50:39,788 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/0e/23/58c4f995475a2a97cb5f4a032aedaf881ad87cd976a7180c55118d105a1d/scipy-1.7.2.tar.gz (from 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trove-classifiers, pyfiglet, py-cpuinfo, mpmath, zipp, xmltodict, wrapt, urllib3, uncertainties, typing-extensions, traitlets, tqdm, toml, threadpoolctl, tabulate, sympy, six, setuptools, ruamel.yaml, pyzmq, PyYAML, python-dotenv, pyparsing, pyiron_snippets, Pygments, psutil, pluggy, platformdirs, pillow, pathspec, palettable, packaging, orjson, numpy, networkx, ndindex, narwhals, msgpack, mpi4py, MarkupSafe, lxml, latexcodec, kiwisolver, joblib, jmespath, idna, fonttools, defusedxml, cycler, colorama, cloudpickle, charset_normalizer, certifi, annotated-types, vcs-versioning, typing-inspection, SQLAlchemy, spglib, scipy, requests, python-dateutil, pyocse, pydantic-core, pybtex, plotly, numexpr, monty, jinja2, importlib_metadata, hatchling, h5py, flexparser, flexcache, executorlib, deprecated, contourpy, blake3, bibtexparser, symfc, setuptools-scm, seekpath, scikit-learn, pylammpsmpi, pydantic, pint, pandas, matplotlib, h5io, botocore, blosc2, vasprun-xml, tables, s3transfer, pysqa, pymatgen-core, pyiron-dataclasses, pyfileindex, pydantic-settings, phonopy, mendeleev, hatch-vcs, h5io-browser, ase, structuretoolkit, pymatgen, pyiron_base, boto3, atomistics, pyxtal, pymatgen-io-validation, emmet-core, assyst, mp-api 2026-04-29T23:52:24,182 Creating /tmp/pip-build-env-mcjk06pq/overlay/local/bin 2026-04-29T23:52:24,185 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/trove-classifiers to 755 2026-04-29T23:52:25,101 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pyfiglet to 755 2026-04-29T23:52:25,197 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/cpuinfo to 755 2026-04-29T23:52:28,106 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/tqdm to 755 2026-04-29T23:52:28,296 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/tabulate to 755 2026-04-29T23:52:53,141 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/isympy to 755 2026-04-29T23:52:57,802 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/dotenv to 755 2026-04-29T23:53:01,680 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pygmentize to 755 2026-04-29T23:53:14,193 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/f2py to 755 2026-04-29T23:53:14,195 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/numpy-config to 755 2026-04-29T23:53:29,165 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/fonttools to 755 2026-04-29T23:53:29,167 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pyftmerge to 755 2026-04-29T23:53:29,169 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pyftsubset to 755 2026-04-29T23:53:29,171 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/ttx to 755 2026-04-29T23:53:29,634 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/normalizer to 755 2026-04-29T23:53:30,019 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/vcs-versioning to 755 2026-04-29T23:53:55,407 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pybtex to 755 2026-04-29T23:53:55,409 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pybtex-convert to 755 2026-04-29T23:53:55,411 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pybtex-format to 755 2026-04-29T23:54:09,046 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/plotly_get_chrome to 755 2026-04-29T23:54:10,526 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/hatchling to 755 2026-04-29T23:54:13,305 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/setuptools-scm to 755 2026-04-29T23:54:26,551 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pint-convert to 755 2026-04-29T23:55:02,451 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pt2to3 to 755 2026-04-29T23:55:02,453 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/ptdump to 755 2026-04-29T23:55:02,455 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/ptrepack to 755 2026-04-29T23:55:02,457 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pttree to 755 2026-04-29T23:55:02,826 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pysqa to 755 2026-04-29T23:55:07,242 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pmg to 755 2026-04-29T23:55:09,018 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy to 755 2026-04-29T23:55:09,020 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-load to 755 2026-04-29T23:55:09,022 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-bandplot to 755 2026-04-29T23:55:09,024 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-calc-convert to 755 2026-04-29T23:55:09,026 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-crystal-born to 755 2026-04-29T23:55:09,028 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-gruneisen to 755 2026-04-29T23:55:09,030 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-gruneisenplot to 755 2026-04-29T23:55:09,033 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-pdosplot to 755 2026-04-29T23:55:09,035 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-propplot to 755 2026-04-29T23:55:09,037 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-qha to 755 2026-04-29T23:55:09,039 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-tdplot to 755 2026-04-29T23:55:09,041 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-vasp-born to 755 2026-04-29T23:55:09,043 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-vasp-efe to 755 2026-04-29T23:55:09,045 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/phonopy-qe-born to 755 2026-04-29T23:55:18,791 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/ase to 755 2026-04-29T23:55:20,827 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/feff_plot_cross_section to 755 2026-04-29T23:55:20,829 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/feff_plot_dos to 755 2026-04-29T23:55:20,831 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/get_environment to 755 2026-04-29T23:55:20,833 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pmg to 755 2026-04-29T23:55:21,779 changing mode of /tmp/pip-build-env-mcjk06pq/overlay/local/bin/pyiron to 755 2026-04-29T23:55:36,736 Successfully installed MarkupSafe-3.0.3 PyYAML-6.0.3 Pygments-2.20.0 SQLAlchemy-2.0.49 annotated-types-0.7.0 ase-3.28.0 assyst-0.13.0 atomistics-0.3.6 bibtexparser-1.4.4 blake3-1.0.8 blosc2-2.7.1 boto3-1.43.0 botocore-1.43.0 certifi-2026.4.22 charset_normalizer-3.4.7 cloudpickle-3.1.2 colorama-0.4.6 contourpy-1.2.1 cycler-0.12.1 defusedxml-0.7.1 deprecated-1.3.1 emmet-core-0.86.3 executorlib-1.9.2 flexcache-0.3 flexparser-0.4 fonttools-4.62.1 h5io-0.2.5 h5io-browser-0.2.14 h5py-3.15.1 hatch-vcs-0.5.0 hatchling-1.29.0 idna-3.13 importlib_metadata-9.0.0 jinja2-3.1.6 jmespath-1.1.0 joblib-1.5.3 kiwisolver-1.4.9 latexcodec-3.0.1 lxml-6.1.0 matplotlib-3.10.9 mendeleev-1.1.0 monty-2026.2.18 mp-api-0.46.0 mpi4py-4.0.3 mpmath-1.3.0 msgpack-1.1.2 narwhals-2.20.0 ndindex-1.10.1 networkx-3.6.1 numexpr-2.14.1 numpy-2.4.3 orjson-3.11.8 packaging-26.2 palettable-3.3.3 pandas-3.0.2 pathspec-1.1.1 phonopy-3.5.1 pillow-12.2.0 pint-0.25.3 platformdirs-4.9.6 plotly-6.7.0 pluggy-1.6.0 psutil-6.0.0 py-cpuinfo-9.0.0 pybtex-0.26.1 pydantic-2.13.3 pydantic-core-2.46.3 pydantic-settings-2.14.0 pyfiglet-0.8.post1 pyfileindex-0.1.5 pyiron-dataclasses-0.0.12 pyiron_base-0.15.14 pyiron_snippets-1.2.1 pylammpsmpi-0.3.12 pymatgen-2026.3.23 pymatgen-core-2026.4.16 pymatgen-io-validation-0.1.2 pyocse-0.1.3 pyparsing-3.3.2 pysqa-0.4.1 python-dateutil-2.9.0.post0 python-dotenv-1.2.2 pyxtal-1.1.3 pyzmq-27.1.0 requests-2.33.1 ruamel.yaml-0.19.1 s3transfer-0.17.0 scikit-learn-1.8.0 scipy-1.17.1 seekpath-2.2.1 setuptools-82.0.1 setuptools-scm-10.0.5 six-1.17.0 spglib-2.7.0 structuretoolkit-0.0.42 symfc-1.7.0 sympy-1.14.0 tables-3.10.2 tabulate-0.10.0 threadpoolctl-3.6.0 toml-0.10.2 tqdm-4.67.3 traitlets-5.14.3 trove-classifiers-2026.4.28.13 typing-extensions-4.15.0 typing-inspection-0.4.2 uncertainties-3.2.3 urllib3-2.6.3 vasprun-xml-1.0.4 vcs-versioning-1.1.1 wrapt-2.1.2 xmltodict-1.0.4 zipp-3.23.1 2026-04-29T23:55:40,084 Installing build dependencies: finished with status 'done' 2026-04-29T23:55:40,091 Getting requirements to build wheel: started 2026-04-29T23:55:40,093 Running command Getting requirements to build wheel 2026-04-29T23:55:40,724 Getting requirements to build wheel: finished with status 'done' 2026-04-29T23:55:40,727 Created temporary directory: /tmp/pip-modern-metadata-bgbyvwzl 2026-04-29T23:55:40,729 Preparing metadata (pyproject.toml): started 2026-04-29T23:55:40,730 Running command Preparing metadata (pyproject.toml) 2026-04-29T23:55:41,673 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-29T23:55:41,678 Source in /tmp/pip-wheel-1qijs99w/pyiron-atomistics_e8093a59b48f43b1b1431beded449974 has version 0.8.8, which satisfies requirement pyiron-atomistics==0.8.8 from https://files.pythonhosted.org/packages/44/71/7df3903476aabc04d02109d83a2d903d28cee02166a1dad2dae930d3fee9/pyiron_atomistics-0.8.8.tar.gz 2026-04-29T23:55:41,680 Removed pyiron-atomistics==0.8.8 from https://files.pythonhosted.org/packages/44/71/7df3903476aabc04d02109d83a2d903d28cee02166a1dad2dae930d3fee9/pyiron_atomistics-0.8.8.tar.gz from build tracker '/tmp/pip-build-tracker-6ts4g_qj' 2026-04-29T23:55:41,687 Created temporary directory: /tmp/pip-unpack-6zgaaxsc 2026-04-29T23:55:41,687 Building wheels for collected packages: pyiron-atomistics 2026-04-29T23:55:41,692 Created temporary directory: /tmp/pip-wheel-1v4osnbk 2026-04-29T23:55:41,692 Destination directory: /tmp/pip-wheel-1v4osnbk 2026-04-29T23:55:41,694 Building wheel for pyiron-atomistics (pyproject.toml): started 2026-04-29T23:55:41,695 Running command Building wheel for pyiron-atomistics (pyproject.toml) 2026-04-29T23:55:41,829 Building wheel for pyiron-atomistics (pyproject.toml): finished with status 'done' 2026-04-29T23:55:41,836 Created wheel for pyiron-atomistics: filename=pyiron_atomistics-0.8.8-py3-none-any.whl size=323994 sha256=e62343d1e8789c98eb01b5c7b6eec35198a396dcd3f07737895ca5056105a34e 2026-04-29T23:55:41,837 Stored in directory: /tmp/pip-ephem-wheel-cache-zjnikl27/wheels/01/87/2a/a226c82c40f8ca6f7bd429348f3298c16f4a0ed5f8efac1a78 2026-04-29T23:55:41,852 Successfully built pyiron-atomistics 2026-04-29T23:55:41,864 Removed build tracker: '/tmp/pip-build-tracker-6ts4g_qj'